HEADER TRANSPORT PROTEIN 01-JUL-12 4FWI TITLE CRYSTAL STRUCTURE OF THE NUCLEOTIDE-BINDING DOMAIN OF A DIPEPTIDE ABC TITLE 2 TRANSPORTER COMPND MOL_ID: 1; COMPND 2 MOLECULE: ABC-TYPE DIPEPTIDE/OLIGOPEPTIDE/NICKEL TRANSPORT SYSTEM, COMPND 3 ATPASE COMPONENT; COMPND 4 CHAIN: B; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOANAEROBACTER TENGCONGENSIS; SOURCE 3 ORGANISM_TAXID: 273068; SOURCE 4 STRAIN: MB4; SOURCE 5 GENE: DPPD; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NBDS, ABC TRANSPORTER, NUCLEOTIDE BINDING, IRON-SULFUR CLUSTER, KEYWDS 2 TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR X.LI,J.GE,M.YANG,N.WANG REVDAT 3 20-MAR-24 4FWI 1 REMARK SEQADV LINK REVDAT 2 07-AUG-13 4FWI 1 JRNL REVDAT 1 30-JAN-13 4FWI 0 JRNL AUTH X.LI,W.ZHUO,J.YU,J.GE,J.GU,Y.FENG,M.YANG,L.WANG,N.WANG JRNL TITL STRUCTURE OF THE NUCLEOTIDE-BINDING DOMAIN OF A DIPEPTIDE JRNL TITL 2 ABC TRANSPORTER REVEALS A NOVEL IRON-SULFUR CLUSTER-BINDING JRNL TITL 3 DOMAIN JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 69 256 2013 JRNL REFN ISSN 0907-4449 JRNL PMID 23385461 JRNL DOI 10.1107/S0907444912045180 REMARK 2 REMARK 2 RESOLUTION. 2.89 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7_650) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.89 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.81 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.4 REMARK 3 NUMBER OF REFLECTIONS : 14810 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.215 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.268 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 739 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.8131 - 4.9428 0.99 3234 159 0.2193 0.2730 REMARK 3 2 4.9428 - 3.9242 0.98 3018 152 0.1681 0.2082 REMARK 3 3 3.9242 - 3.4284 0.95 2848 165 0.1923 0.2684 REMARK 3 4 3.4284 - 3.1151 0.88 2620 127 0.2532 0.2998 REMARK 3 5 3.1151 - 2.8919 0.80 2351 136 0.3439 0.4282 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.30 REMARK 3 SHRINKAGE RADIUS : 1.06 REMARK 3 K_SOL : 0.33 REMARK 3 B_SOL : 39.95 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.380 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.470 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 68.67 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 6.89560 REMARK 3 B22 (A**2) : 6.89560 REMARK 3 B33 (A**2) : -13.79120 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.015 2594 REMARK 3 ANGLE : 1.477 3417 REMARK 3 CHIRALITY : 0.085 397 REMARK 3 PLANARITY : 0.005 422 REMARK 3 DIHEDRAL : 20.334 956 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN B AND ( RESID 402:402 OR RESID 403:403 OR REMARK 3 RESID 2:321 OR RESID 401:401 ) ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.5107 1.1939 22.6711 REMARK 3 T TENSOR REMARK 3 T11: 0.1094 T22: 0.4700 REMARK 3 T33: 0.1638 T12: -0.0362 REMARK 3 T13: -0.0348 T23: 0.0231 REMARK 3 L TENSOR REMARK 3 L11: 0.2344 L22: 0.1379 REMARK 3 L33: 0.1323 L12: 0.1293 REMARK 3 L13: 0.0799 L23: 0.0727 REMARK 3 S TENSOR REMARK 3 S11: -0.0227 S12: 0.1391 S13: 0.0858 REMARK 3 S21: -0.0133 S22: 0.0089 S23: -0.0069 REMARK 3 S31: 0.0026 S32: -0.0067 S33: 0.0284 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4FWI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 12-JUL-12. REMARK 100 THE DEPOSITION ID IS D_1000073443. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-NOV-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 11.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : MIRROR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15715 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.892 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.89 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.99 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 72.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 4%(V/V) 2-PROPANOL, 0.05M CAPSO, REMARK 280 12.25%(W/V) PEG MME5000, 12.5% GLYCEROL, PH 11.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z+1/2 REMARK 290 7555 Y,X,-Z+1/4 REMARK 290 8555 -Y,-X,-Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 160.30400 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 240.45600 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 80.15200 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 160.30400 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 80.15200 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 240.45600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 1 REMARK 465 ALA B 260 REMARK 465 VAL B 261 REMARK 465 ASN B 262 REMARK 465 ALA B 263 REMARK 465 ASP B 264 REMARK 465 MET B 265 REMARK 465 SER B 266 REMARK 465 LYS B 267 REMARK 465 VAL B 268 REMARK 465 LYS B 269 REMARK 465 GLY B 322 REMARK 465 ARG B 323 REMARK 465 PRO B 324 REMARK 465 LEU B 325 REMARK 465 LYS B 326 REMARK 465 LEU B 327 REMARK 465 GLU B 328 REMARK 465 HIS B 329 REMARK 465 HIS B 330 REMARK 465 HIS B 331 REMARK 465 HIS B 332 REMARK 465 HIS B 333 REMARK 465 HIS B 334 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR B 37 CG2 REMARK 470 THR B 106 CG2 REMARK 470 THR B 116 CG2 REMARK 470 LEU B 188 CG CD1 CD2 REMARK 470 THR B 239 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ARG B 307 O ALA B 312 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 96 C - N - CA ANGL. DEV. = 11.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS B 22 53.85 -96.67 REMARK 500 ALA B 24 61.89 34.69 REMARK 500 PRO B 59 -179.11 -69.14 REMARK 500 ARG B 88 -114.69 -52.63 REMARK 500 GLU B 91 -61.43 -109.37 REMARK 500 ALA B 98 58.83 35.10 REMARK 500 VAL B 122 132.07 -31.28 REMARK 500 ASP B 172 77.53 48.85 REMARK 500 LEU B 185 116.24 -179.02 REMARK 500 VAL B 187 -71.24 -47.96 REMARK 500 GLU B 235 146.31 -171.58 REMARK 500 SER B 257 6.39 -64.16 REMARK 500 ARG B 286 -9.10 -56.39 REMARK 500 LEU B 308 -124.30 53.04 REMARK 500 CYS B 316 131.61 -170.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 ATP B 402 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 403 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 48 OG REMARK 620 2 GLN B 97 OE1 58.7 REMARK 620 3 ASP B 179 OD2 81.8 88.3 REMARK 620 4 ATP B 402 O2G 83.2 54.8 142.6 REMARK 620 5 ATP B 402 O1B 54.7 76.3 135.9 48.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 B 401 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 285 SG REMARK 620 2 SF4 B 401 S1 128.4 REMARK 620 3 SF4 B 401 S3 106.7 92.3 REMARK 620 4 SF4 B 401 S4 128.6 94.4 97.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 B 401 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 291 SG REMARK 620 2 SF4 B 401 S1 115.8 REMARK 620 3 SF4 B 401 S2 131.8 90.3 REMARK 620 4 SF4 B 401 S4 124.1 94.3 90.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 B 401 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 298 SG REMARK 620 2 SF4 B 401 S2 122.7 REMARK 620 3 SF4 B 401 S3 138.3 91.3 REMARK 620 4 SF4 B 401 S4 107.0 89.8 95.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 B 401 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 316 SG REMARK 620 2 SF4 B 401 S1 129.9 REMARK 620 3 SF4 B 401 S2 122.6 90.8 REMARK 620 4 SF4 B 401 S3 120.3 91.5 91.7 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SF4 B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 403 DBREF 4FWI B 1 326 UNP Q8RDH4 Q8RDH4_THETN 1 326 SEQADV 4FWI LEU B 327 UNP Q8RDH4 EXPRESSION TAG SEQADV 4FWI GLU B 328 UNP Q8RDH4 EXPRESSION TAG SEQADV 4FWI HIS B 329 UNP Q8RDH4 EXPRESSION TAG SEQADV 4FWI HIS B 330 UNP Q8RDH4 EXPRESSION TAG SEQADV 4FWI HIS B 331 UNP Q8RDH4 EXPRESSION TAG SEQADV 4FWI HIS B 332 UNP Q8RDH4 EXPRESSION TAG SEQADV 4FWI HIS B 333 UNP Q8RDH4 EXPRESSION TAG SEQADV 4FWI HIS B 334 UNP Q8RDH4 EXPRESSION TAG SEQRES 1 B 334 MET SER ILE ILE ILE ARG VAL GLU ASP LEU ARG ALA VAL SEQRES 2 B 334 TYR LEU VAL ARG GLU GLY THR ILE LYS ALA ALA ASP GLY SEQRES 3 B 334 ILE SER LEU ASP ILE LEU GLU ASN SER VAL THR ALA ILE SEQRES 4 B 334 VAL GLY GLU SER ALA SER GLY LYS SER THR ILE ILE GLU SEQRES 5 B 334 ALA MET THR LYS THR LEU PRO PRO ASN GLY ARG ILE LEU SEQRES 6 B 334 SER GLY ARG VAL LEU TYR LYS GLY LYS ASP LEU LEU THR SEQRES 7 B 334 MET ARG GLU GLU GLU LEU ARG LYS ILE ARG TRP LYS GLU SEQRES 8 B 334 ILE ALA LEU VAL PRO GLN ALA ALA GLN GLN SER LEU ASN SEQRES 9 B 334 PRO THR MET LYS VAL ILE GLU HIS PHE LYS ASP THR VAL SEQRES 10 B 334 GLU ALA HIS GLY VAL ARG TRP SER HIS SER GLU LEU ILE SEQRES 11 B 334 GLU LYS ALA SER GLU LYS LEU ARG MET VAL ARG LEU ASN SEQRES 12 B 334 PRO GLU ALA VAL LEU ASN SER TYR PRO LEU GLN LEU SER SEQRES 13 B 334 GLY GLY MET LYS GLN ARG VAL LEU ILE ALA LEU ALA LEU SEQRES 14 B 334 LEU LEU ASP PRO VAL VAL LEU ILE LEU ASP GLU PRO THR SEQRES 15 B 334 SER ALA LEU ASP VAL LEU THR GLN ALA HIS ILE ILE GLN SEQRES 16 B 334 LEU LEU LYS GLU LEU LYS LYS MET LEU LYS ILE THR LEU SEQRES 17 B 334 ILE PHE VAL THR HIS ASP ILE ALA VAL ALA ALA GLU LEU SEQRES 18 B 334 ALA ASP LYS VAL ALA VAL ILE TYR GLY GLY ASN LEU VAL SEQRES 19 B 334 GLU TYR ASN SER THR PHE GLN ILE PHE LYS ASN PRO LEU SEQRES 20 B 334 HIS PRO TYR THR ARG GLY LEU ILE ASN SER ILE MET ALA SEQRES 21 B 334 VAL ASN ALA ASP MET SER LYS VAL LYS PRO ILE PRO GLY SEQRES 22 B 334 ASP PRO PRO SER LEU LEU ASN PRO PRO SER GLY CYS ARG SEQRES 23 B 334 PHE HIS PRO ARG CYS GLU TYR ALA MET GLU ILE CYS LYS SEQRES 24 B 334 LYS GLU LYS PRO LYS TRP ILE ARG LEU ASP GLY GLU ALA SEQRES 25 B 334 HIS VAL ALA CYS HIS LEU TYR GLU GLU GLY ARG PRO LEU SEQRES 26 B 334 LYS LEU GLU HIS HIS HIS HIS HIS HIS HET SF4 B 401 8 HET ATP B 402 31 HET MG B 403 1 HETNAM SF4 IRON/SULFUR CLUSTER HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 2 SF4 FE4 S4 FORMUL 3 ATP C10 H16 N5 O13 P3 FORMUL 4 MG MG 2+ HELIX 1 1 GLY B 46 THR B 55 1 10 HELIX 2 2 ARG B 80 ARG B 85 1 6 HELIX 3 3 ILE B 87 GLU B 91 1 5 HELIX 4 4 ALA B 98 LEU B 103 5 6 HELIX 5 5 LYS B 108 HIS B 120 1 13 HELIX 6 6 SER B 125 VAL B 140 1 16 HELIX 7 7 ASN B 143 ASN B 149 1 7 HELIX 8 8 TYR B 151 LEU B 155 5 5 HELIX 9 9 SER B 156 LEU B 170 1 15 HELIX 10 10 ASP B 186 LEU B 204 1 19 HELIX 11 11 ASP B 214 ALA B 222 1 9 HELIX 12 12 THR B 239 ASN B 245 1 7 HELIX 13 13 HIS B 248 SER B 257 1 10 HELIX 14 14 MET B 295 GLU B 301 1 7 SHEET 1 A 3 GLY B 19 ILE B 21 0 SHEET 2 A 3 ILE B 3 VAL B 16 -1 N VAL B 16 O GLY B 19 SHEET 3 A 3 LEU B 29 LEU B 32 -1 O ILE B 31 N ILE B 5 SHEET 1 B 4 GLY B 19 ILE B 21 0 SHEET 2 B 4 ILE B 3 VAL B 16 -1 N VAL B 16 O GLY B 19 SHEET 3 B 4 GLY B 62 TYR B 71 -1 O ARG B 63 N VAL B 13 SHEET 4 B 4 LYS B 74 ASP B 75 -1 O LYS B 74 N TYR B 71 SHEET 1 C 8 ILE B 92 VAL B 95 0 SHEET 2 C 8 VAL B 175 LEU B 178 1 O ILE B 177 N ALA B 93 SHEET 3 C 8 THR B 207 THR B 212 1 O VAL B 211 N LEU B 178 SHEET 4 C 8 VAL B 36 VAL B 40 1 N ILE B 39 O PHE B 210 SHEET 5 C 8 LYS B 224 TYR B 229 1 O ALA B 226 N VAL B 40 SHEET 6 C 8 ASN B 232 SER B 238 -1 O ASN B 237 N VAL B 225 SHEET 7 C 8 HIS B 313 ALA B 315 -1 O HIS B 313 N TYR B 236 SHEET 8 C 8 TRP B 305 ILE B 306 -1 N ILE B 306 O VAL B 314 LINK OG SER B 48 MG MG B 403 1555 1555 2.33 LINK OE1 GLN B 97 MG MG B 403 1555 1555 2.34 LINK OD2 ASP B 179 MG MG B 403 1555 1555 2.96 LINK SG CYS B 285 FE2 SF4 B 401 1555 1555 2.26 LINK SG CYS B 291 FE3 SF4 B 401 1555 1555 2.22 LINK SG CYS B 298 FE1 SF4 B 401 1555 1555 2.29 LINK SG CYS B 316 FE4 SF4 B 401 1555 1555 2.35 LINK O2G ATP B 402 MG MG B 403 1555 1555 2.65 LINK O1B ATP B 402 MG MG B 403 1555 1555 2.67 SITE 1 AC1 8 HIS B 248 PRO B 249 CYS B 285 HIS B 288 SITE 2 AC1 8 CYS B 291 CYS B 298 CYS B 316 HIS B 317 SITE 1 AC2 13 TYR B 14 ARG B 17 ILE B 21 SER B 43 SITE 2 AC2 13 ALA B 44 SER B 45 GLY B 46 LYS B 47 SITE 3 AC2 13 SER B 48 THR B 49 ASN B 61 GLN B 97 SITE 4 AC2 13 MG B 403 SITE 1 AC3 5 SER B 48 GLN B 97 ASP B 179 GLU B 180 SITE 2 AC3 5 ATP B 402 CRYST1 64.247 64.247 320.608 90.00 90.00 90.00 P 43 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015565 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015565 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003119 0.00000