data_4G14 # _entry.id 4G14 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.382 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4G14 pdb_00004g14 10.2210/pdb4g14/pdb RCSB RCSB073605 ? ? WWPDB D_1000073605 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1JOH 'Antiamoebin in Methanol/water' unspecified PDB 1OB4 'Cephaibol A' unspecified PDB 1OB6 'Cephaibol B' unspecified PDB 1OB7 'Cephaibol C' unspecified PDB 4G13 'Samarosporin I' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4G14 _pdbx_database_status.recvd_initial_deposition_date 2012-07-10 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Gessmann, R.' 1 'Axford, D.' 2 'Petratos, K.' 3 # _citation.id primary _citation.title 'The crystal structure of samarosporin I at atomic resolution.' _citation.journal_abbrev J.Pept.Sci. _citation.journal_volume 18 _citation.page_first 678 _citation.page_last 684 _citation.year 2012 _citation.journal_id_ASTM JPSIEI _citation.country UK _citation.journal_id_ISSN 1075-2617 _citation.journal_id_CSD 1225 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23019149 _citation.pdbx_database_id_DOI 10.1002/psc.2454 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Gessmann, R.' 1 ? primary 'Axford, D.' 2 ? primary 'Evans, G.' 3 ? primary 'Bruckner, H.' 4 ? primary 'Petratos, K.' 5 ? # _cell.entry_id 4G14 _cell.length_a 46.280 _cell.length_b 9.170 _cell.length_c 25.250 _cell.angle_alpha 90.00 _cell.angle_beta 116.59 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4G14 _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'SAMAROSPORIN I' 1557.876 1 ? ? ? ? 2 water nat water 18.015 2 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'EMERIMICIN IV, STILBELLIN I' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(ACE)F(AIB)(AIB)(AIB)VGL(AIB)(AIB)(HYP)Q(DIV)(HYP)(AIB)(PHL)' _entity_poly.pdbx_seq_one_letter_code_can XFAAAVGLAAPQVPAF _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ACE n 1 2 PHE n 1 3 AIB n 1 4 AIB n 1 5 AIB n 1 6 VAL n 1 7 GLY n 1 8 LEU n 1 9 AIB n 1 10 AIB n 1 11 HYP n 1 12 GLN n 1 13 DIV n 1 14 HYP n 1 15 AIB n 1 16 PHL n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name ? _entity_src_nat.pdbx_organism_scientific 'samarospora rostrup' _entity_src_nat.pdbx_ncbi_taxonomy_id ? _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain F-7762 _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # _struct_ref.id 1 _struct_ref.db_name NOR _struct_ref.db_code NOR00986 _struct_ref.pdbx_db_accession NOR00986 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code XFAAAVGLAAPQVPAF _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4G14 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 16 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession NOR00986 _struct_ref_seq.db_align_beg 0 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 15 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 0 _struct_ref_seq.pdbx_auth_seq_align_end 15 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ACE non-polymer . 'ACETYL GROUP' ? 'C2 H4 O' 44.053 AIB 'L-peptide linking' n 'ALPHA-AMINOISOBUTYRIC ACID' ? 'C4 H9 N O2' 103.120 DIV 'D-peptide linking' . D-ISOVALINE ? 'C5 H11 N O2' 117.146 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 HYP 'L-peptide linking' n 4-HYDROXYPROLINE HYDROXYPROLINE 'C5 H9 N O3' 131.130 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PHL 'L-peptide linking' n L-PHENYLALANINOL 'bound form of Phenylalaninal' 'C9 H13 N O' 151.206 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4G14 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.52 _exptl_crystal.density_percent_sol 18.4 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method EVAPORATION _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pdbx_details 'methanol/water, EVAPORATION, temperature 293K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 293 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector PIXEL _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.pdbx_collection_date 2012-03-03 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'ACCEL FIXED EXIT DOUBLE CRYSTAL' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.7293 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'DIAMOND BEAMLINE I24' _diffrn_source.pdbx_synchrotron_site Diamond _diffrn_source.pdbx_synchrotron_beamline I24 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.7293 # _reflns.entry_id 4G14 _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F 0.0 _reflns.d_resolution_low 22.59 _reflns.d_resolution_high 1.09 _reflns.number_obs 4194 _reflns.number_all 4194 _reflns.percent_possible_obs 99.2 _reflns.pdbx_netI_over_sigmaI 4.2 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 3.0 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? # _reflns_shell.d_res_high 1.09 _reflns_shell.d_res_low 1.12 _reflns_shell.percent_possible_all 99.2 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.6 _reflns_shell.pdbx_redundancy 3.1 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 4G14 _refine.ls_number_reflns_obs 4194 _refine.ls_number_reflns_all 4194 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 22.59 _refine.ls_d_res_high 1.09 _refine.ls_percent_reflns_obs 99.2 _refine.ls_R_factor_obs 0.123 _refine.ls_R_factor_R_work 0.12 _refine.ls_R_factor_R_free 0.171 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5 _refine.ls_number_reflns_R_free 206 _refine.ls_number_parameters 1022 _refine.ls_number_restraints 1001 _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details BABINET _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 4G13' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details random _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_R_factor_all ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_analyze.entry_id 4G14 _refine_analyze.Luzzati_coordinate_error_obs ? _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen 112 _refine_analyze.occupancy_sum_non_hydrogen 114 _refine_analyze.pdbx_Luzzati_d_res_high_obs ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 112 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 2 _refine_hist.number_atoms_total 114 _refine_hist.d_res_high 1.09 _refine_hist.d_res_low 22.59 # _pdbx_refine.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine.entry_id 4G14 _pdbx_refine.R_factor_all_no_cutoff 0.123 _pdbx_refine.R_factor_obs_no_cutoff 0.120 _pdbx_refine.free_R_factor_no_cutoff 0.171 _pdbx_refine.free_R_error_no_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_no_cutoff 5 _pdbx_refine.free_R_val_test_set_ct_no_cutoff 206 _pdbx_refine.R_factor_all_4sig_cutoff ? _pdbx_refine.R_factor_obs_4sig_cutoff 0.112 _pdbx_refine.free_R_factor_4sig_cutoff 0.157 _pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff 5 _pdbx_refine.free_R_val_test_set_ct_4sig_cutoff 166 _pdbx_refine.number_reflns_obs_4sig_cutoff 3432 # _struct.entry_id 4G14 _struct.title 'Crystal structure of samarosporin I at 293K' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4G14 _struct_keywords.pdbx_keywords ANTIBIOTIC _struct_keywords.text 'peptaibol, 3(10)-alpha Helix, antibiotic peptide, membrane, extracellular, ANTIBIOTIC' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.details 'AS PER AUTHORS THE BIOLOGICAL ASSEMBLY IS MULTIMERIC OF UNKNOWN STOICHIOMETRY' # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 PHE A 2 ? HYP A 11 ? PHE A 1 HYP A 10 1 ? 10 HELX_P HELX_P2 2 GLN A 12 ? PHL A 16 ? GLN A 11 PHL A 15 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A ACE 1 C ? ? ? 1_555 A PHE 2 N ? ? A ACE 0 A PHE 1 1_555 ? ? ? ? ? ? ? 1.400 ? ? covale2 covale both ? A PHE 2 C ? ? ? 1_555 A AIB 3 N ? ? A PHE 1 A AIB 2 1_555 ? ? ? ? ? ? ? 1.272 ? ? covale3 covale both ? A AIB 3 C ? ? ? 1_555 A AIB 4 N ? ? A AIB 2 A AIB 3 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale4 covale both ? A AIB 4 C ? ? ? 1_555 A AIB 5 N ? ? A AIB 3 A AIB 4 1_555 ? ? ? ? ? ? ? 1.336 sing ? covale5 covale both ? A AIB 5 C ? ? ? 1_555 A VAL 6 N ? ? A AIB 4 A VAL 5 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale6 covale both ? A LEU 8 C ? ? ? 1_555 A AIB 9 N ? ? A LEU 7 A AIB 8 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale7 covale both ? A AIB 9 C ? ? ? 1_555 A AIB 10 N ? ? A AIB 8 A AIB 9 1_555 ? ? ? ? ? ? ? 1.340 ? ? covale8 covale both ? A AIB 10 C ? ? ? 1_555 A HYP 11 N ? ? A AIB 9 A HYP 10 1_555 ? ? ? ? ? ? ? 1.350 ? ? covale9 covale both ? A HYP 11 C ? ? ? 1_555 A GLN 12 N ? ? A HYP 10 A GLN 11 1_555 ? ? ? ? ? ? ? 1.350 ? ? covale10 covale both ? A GLN 12 C ? ? ? 1_555 A DIV 13 N ? ? A GLN 11 A DIV 12 1_555 ? ? ? ? ? ? ? 1.355 ? ? covale11 covale both ? A DIV 13 C ? ? ? 1_555 A HYP 14 N ? ? A DIV 12 A HYP 13 1_555 ? ? ? ? ? ? ? 1.354 ? ? covale12 covale both ? A HYP 14 C ? ? ? 1_555 A AIB 15 N ? ? A HYP 13 A AIB 14 1_555 ? ? ? ? ? ? ? 1.317 ? ? covale13 covale both ? A AIB 15 C ? ? ? 1_555 A PHL 16 N ? ? A AIB 14 A PHL 15 1_555 ? ? ? ? ? ? ? 1.336 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _database_PDB_matrix.entry_id 4G14 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4G14 _atom_sites.fract_transf_matrix[1][1] 0.021608 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.010816 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.109051 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.044288 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C H N O # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ACE 1 0 0 ACE ACE A . n A 1 2 PHE 2 1 1 PHE PHE A . n A 1 3 AIB 3 2 2 AIB AIB A . n A 1 4 AIB 4 3 3 AIB AIB A . n A 1 5 AIB 5 4 4 AIB AIB A . n A 1 6 VAL 6 5 5 VAL VAL A . n A 1 7 GLY 7 6 6 GLY GLY A . n A 1 8 LEU 8 7 7 LEU LEU A . n A 1 9 AIB 9 8 8 AIB AIB A . n A 1 10 AIB 10 9 9 AIB AIB A . n A 1 11 HYP 11 10 10 HYP HYP A . n A 1 12 GLN 12 11 11 GLN GLN A . n A 1 13 DIV 13 12 12 DIV DIV A . n A 1 14 HYP 14 13 13 HYP HYP A . n A 1 15 AIB 15 14 14 AIB AIB A . n A 1 16 PHL 16 15 15 PHL PHL A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 101 21 HOH HOH A . B 2 HOH 2 102 20 HOH HOH A . # _pdbx_molecule_features.prd_id PRD_000920 _pdbx_molecule_features.name 'SAMAROSPORIN I' _pdbx_molecule_features.type Peptaibol _pdbx_molecule_features.class Antibiotic _pdbx_molecule_features.details ? # _pdbx_molecule.instance_id 1 _pdbx_molecule.prd_id PRD_000920 _pdbx_molecule.asym_id A # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-10-03 2 'Structure model' 1 1 2012-10-31 3 'Structure model' 1 2 2012-12-26 4 'Structure model' 1 3 2018-07-18 5 'Structure model' 1 4 2023-09-13 6 'Structure model' 1 5 2023-12-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 3 'Structure model' 'Structure summary' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Database references' 6 5 'Structure model' 'Data collection' 7 5 'Structure model' 'Database references' 8 5 'Structure model' 'Derived calculations' 9 5 'Structure model' 'Refinement description' 10 5 'Structure model' 'Structure summary' 11 6 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' pdbx_database_related 2 5 'Structure model' chem_comp 3 5 'Structure model' chem_comp_atom 4 5 'Structure model' chem_comp_bond 5 5 'Structure model' database_2 6 5 'Structure model' pdbx_initial_refinement_model 7 5 'Structure model' struct_conn 8 6 'Structure model' chem_comp_atom 9 6 'Structure model' chem_comp_bond # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_chem_comp.pdbx_synonyms' 2 5 'Structure model' '_database_2.pdbx_DOI' 3 5 'Structure model' '_database_2.pdbx_database_accession' 4 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 5 6 'Structure model' '_chem_comp_atom.atom_id' 6 6 'Structure model' '_chem_comp_bond.atom_id_2' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal SHELXL-97 refinement . ? 1 xia2 'data reduction' . ? 2 xia2 'data scaling' . ? 3 # _pdbx_entry_details.entry_id 4G14 _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ;SAMAROSPORIN I/EMERIMICIN IV IS LINEAR PEPTIDE, A MEMBER OF THE PEPT FAMILY OF MEMBRANE CHANNEL FORMING PEPTIDES. HERE, SAMAROSPORIN I/EMERIMICIN IV IS REPRESENTED BY THE SEQUENCE (SEQRES) THE N-TERM IS ACETYLATED (RESIDUE 0) ; _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest ? # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 CB _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 PHE _pdbx_validate_rmsd_angle.auth_seq_id_1 1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CG _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 PHE _pdbx_validate_rmsd_angle.auth_seq_id_2 1 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 CD2 _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 PHE _pdbx_validate_rmsd_angle.auth_seq_id_3 1 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 116.05 _pdbx_validate_rmsd_angle.angle_target_value 120.80 _pdbx_validate_rmsd_angle.angle_deviation -4.75 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.70 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ACE C C N N 1 ACE O O N N 2 ACE CH3 C N N 3 ACE H H N N 4 ACE H1 H N N 5 ACE H2 H N N 6 ACE H3 H N N 7 AIB N N N N 8 AIB CA C N N 9 AIB C C N N 10 AIB O O N N 11 AIB OXT O N N 12 AIB CB1 C N N 13 AIB CB2 C N N 14 AIB H H N N 15 AIB H2 H N N 16 AIB HXT H N N 17 AIB HB11 H N N 18 AIB HB12 H N N 19 AIB HB13 H N N 20 AIB HB21 H N N 21 AIB HB22 H N N 22 AIB HB23 H N N 23 DIV N N N N 24 DIV CA C N R 25 DIV CB1 C N N 26 DIV CG1 C N N 27 DIV CB2 C N N 28 DIV C C N N 29 DIV O O N N 30 DIV OXT O N N 31 DIV H H N N 32 DIV H2 H N N 33 DIV HB11 H N N 34 DIV HB12 H N N 35 DIV HG11 H N N 36 DIV HG12 H N N 37 DIV HG13 H N N 38 DIV HB21 H N N 39 DIV HB22 H N N 40 DIV HB23 H N N 41 DIV HXT H N N 42 GLN N N N N 43 GLN CA C N S 44 GLN C C N N 45 GLN O O N N 46 GLN CB C N N 47 GLN CG C N N 48 GLN CD C N N 49 GLN OE1 O N N 50 GLN NE2 N N N 51 GLN OXT O N N 52 GLN H H N N 53 GLN H2 H N N 54 GLN HA H N N 55 GLN HB2 H N N 56 GLN HB3 H N N 57 GLN HG2 H N N 58 GLN HG3 H N N 59 GLN HE21 H N N 60 GLN HE22 H N N 61 GLN HXT H N N 62 GLY N N N N 63 GLY CA C N N 64 GLY C C N N 65 GLY O O N N 66 GLY OXT O N N 67 GLY H H N N 68 GLY H2 H N N 69 GLY HA2 H N N 70 GLY HA3 H N N 71 GLY HXT H N N 72 HOH O O N N 73 HOH H1 H N N 74 HOH H2 H N N 75 HYP N N N N 76 HYP CA C N S 77 HYP C C N N 78 HYP O O N N 79 HYP CB C N N 80 HYP CG C N R 81 HYP CD C N N 82 HYP OD1 O N N 83 HYP OXT O N N 84 HYP H H N N 85 HYP HA H N N 86 HYP HB2 H N N 87 HYP HB3 H N N 88 HYP HG H N N 89 HYP HD22 H N N 90 HYP HD23 H N N 91 HYP HD1 H N N 92 HYP HXT H N N 93 LEU N N N N 94 LEU CA C N S 95 LEU C C N N 96 LEU O O N N 97 LEU CB C N N 98 LEU CG C N N 99 LEU CD1 C N N 100 LEU CD2 C N N 101 LEU OXT O N N 102 LEU H H N N 103 LEU H2 H N N 104 LEU HA H N N 105 LEU HB2 H N N 106 LEU HB3 H N N 107 LEU HG H N N 108 LEU HD11 H N N 109 LEU HD12 H N N 110 LEU HD13 H N N 111 LEU HD21 H N N 112 LEU HD22 H N N 113 LEU HD23 H N N 114 LEU HXT H N N 115 PHE N N N N 116 PHE CA C N S 117 PHE C C N N 118 PHE O O N N 119 PHE CB C N N 120 PHE CG C Y N 121 PHE CD1 C Y N 122 PHE CD2 C Y N 123 PHE CE1 C Y N 124 PHE CE2 C Y N 125 PHE CZ C Y N 126 PHE OXT O N N 127 PHE H H N N 128 PHE H2 H N N 129 PHE HA H N N 130 PHE HB2 H N N 131 PHE HB3 H N N 132 PHE HD1 H N N 133 PHE HD2 H N N 134 PHE HE1 H N N 135 PHE HE2 H N N 136 PHE HZ H N N 137 PHE HXT H N N 138 PHL N N N N 139 PHL CA C N S 140 PHL C C N N 141 PHL O O N N 142 PHL CB C N N 143 PHL CG C Y N 144 PHL CD1 C Y N 145 PHL CD2 C Y N 146 PHL CE1 C Y N 147 PHL CE2 C Y N 148 PHL CZ C Y N 149 PHL H H N N 150 PHL H2 H N N 151 PHL HA H N N 152 PHL HC1 H N N 153 PHL HC2 H N N 154 PHL HO H N N 155 PHL HB2 H N N 156 PHL HB3 H N N 157 PHL HD1 H N N 158 PHL HD2 H N N 159 PHL HE1 H N N 160 PHL HE2 H N N 161 PHL HZ H N N 162 VAL N N N N 163 VAL CA C N S 164 VAL C C N N 165 VAL O O N N 166 VAL CB C N N 167 VAL CG1 C N N 168 VAL CG2 C N N 169 VAL OXT O N N 170 VAL H H N N 171 VAL H2 H N N 172 VAL HA H N N 173 VAL HB H N N 174 VAL HG11 H N N 175 VAL HG12 H N N 176 VAL HG13 H N N 177 VAL HG21 H N N 178 VAL HG22 H N N 179 VAL HG23 H N N 180 VAL HXT H N N 181 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ACE C O doub N N 1 ACE C CH3 sing N N 2 ACE C H sing N N 3 ACE CH3 H1 sing N N 4 ACE CH3 H2 sing N N 5 ACE CH3 H3 sing N N 6 AIB N CA sing N N 7 AIB N H sing N N 8 AIB N H2 sing N N 9 AIB CA C sing N N 10 AIB CA CB1 sing N N 11 AIB CA CB2 sing N N 12 AIB C O doub N N 13 AIB C OXT sing N N 14 AIB OXT HXT sing N N 15 AIB CB1 HB11 sing N N 16 AIB CB1 HB12 sing N N 17 AIB CB1 HB13 sing N N 18 AIB CB2 HB21 sing N N 19 AIB CB2 HB22 sing N N 20 AIB CB2 HB23 sing N N 21 DIV N CA sing N N 22 DIV N H sing N N 23 DIV N H2 sing N N 24 DIV CA CB1 sing N N 25 DIV CA CB2 sing N N 26 DIV CA C sing N N 27 DIV CB1 CG1 sing N N 28 DIV CB1 HB11 sing N N 29 DIV CB1 HB12 sing N N 30 DIV CG1 HG11 sing N N 31 DIV CG1 HG12 sing N N 32 DIV CG1 HG13 sing N N 33 DIV CB2 HB21 sing N N 34 DIV CB2 HB22 sing N N 35 DIV CB2 HB23 sing N N 36 DIV C O doub N N 37 DIV C OXT sing N N 38 DIV OXT HXT sing N N 39 GLN N CA sing N N 40 GLN N H sing N N 41 GLN N H2 sing N N 42 GLN CA C sing N N 43 GLN CA CB sing N N 44 GLN CA HA sing N N 45 GLN C O doub N N 46 GLN C OXT sing N N 47 GLN CB CG sing N N 48 GLN CB HB2 sing N N 49 GLN CB HB3 sing N N 50 GLN CG CD sing N N 51 GLN CG HG2 sing N N 52 GLN CG HG3 sing N N 53 GLN CD OE1 doub N N 54 GLN CD NE2 sing N N 55 GLN NE2 HE21 sing N N 56 GLN NE2 HE22 sing N N 57 GLN OXT HXT sing N N 58 GLY N CA sing N N 59 GLY N H sing N N 60 GLY N H2 sing N N 61 GLY CA C sing N N 62 GLY CA HA2 sing N N 63 GLY CA HA3 sing N N 64 GLY C O doub N N 65 GLY C OXT sing N N 66 GLY OXT HXT sing N N 67 HOH O H1 sing N N 68 HOH O H2 sing N N 69 HYP N CA sing N N 70 HYP N CD sing N N 71 HYP N H sing N N 72 HYP CA C sing N N 73 HYP CA CB sing N N 74 HYP CA HA sing N N 75 HYP C O doub N N 76 HYP C OXT sing N N 77 HYP CB CG sing N N 78 HYP CB HB2 sing N N 79 HYP CB HB3 sing N N 80 HYP CG CD sing N N 81 HYP CG OD1 sing N N 82 HYP CG HG sing N N 83 HYP CD HD22 sing N N 84 HYP CD HD23 sing N N 85 HYP OD1 HD1 sing N N 86 HYP OXT HXT sing N N 87 LEU N CA sing N N 88 LEU N H sing N N 89 LEU N H2 sing N N 90 LEU CA C sing N N 91 LEU CA CB sing N N 92 LEU CA HA sing N N 93 LEU C O doub N N 94 LEU C OXT sing N N 95 LEU CB CG sing N N 96 LEU CB HB2 sing N N 97 LEU CB HB3 sing N N 98 LEU CG CD1 sing N N 99 LEU CG CD2 sing N N 100 LEU CG HG sing N N 101 LEU CD1 HD11 sing N N 102 LEU CD1 HD12 sing N N 103 LEU CD1 HD13 sing N N 104 LEU CD2 HD21 sing N N 105 LEU CD2 HD22 sing N N 106 LEU CD2 HD23 sing N N 107 LEU OXT HXT sing N N 108 PHE N CA sing N N 109 PHE N H sing N N 110 PHE N H2 sing N N 111 PHE CA C sing N N 112 PHE CA CB sing N N 113 PHE CA HA sing N N 114 PHE C O doub N N 115 PHE C OXT sing N N 116 PHE CB CG sing N N 117 PHE CB HB2 sing N N 118 PHE CB HB3 sing N N 119 PHE CG CD1 doub Y N 120 PHE CG CD2 sing Y N 121 PHE CD1 CE1 sing Y N 122 PHE CD1 HD1 sing N N 123 PHE CD2 CE2 doub Y N 124 PHE CD2 HD2 sing N N 125 PHE CE1 CZ doub Y N 126 PHE CE1 HE1 sing N N 127 PHE CE2 CZ sing Y N 128 PHE CE2 HE2 sing N N 129 PHE CZ HZ sing N N 130 PHE OXT HXT sing N N 131 PHL N CA sing N N 132 PHL N H sing N N 133 PHL N H2 sing N N 134 PHL CA C sing N N 135 PHL CA CB sing N N 136 PHL CA HA sing N N 137 PHL C O sing N N 138 PHL C HC1 sing N N 139 PHL C HC2 sing N N 140 PHL O HO sing N N 141 PHL CB CG sing N N 142 PHL CB HB2 sing N N 143 PHL CB HB3 sing N N 144 PHL CG CD1 doub Y N 145 PHL CG CD2 sing Y N 146 PHL CD1 CE1 sing Y N 147 PHL CD1 HD1 sing N N 148 PHL CD2 CE2 doub Y N 149 PHL CD2 HD2 sing N N 150 PHL CE1 CZ doub Y N 151 PHL CE1 HE1 sing N N 152 PHL CE2 CZ sing Y N 153 PHL CE2 HE2 sing N N 154 PHL CZ HZ sing N N 155 VAL N CA sing N N 156 VAL N H sing N N 157 VAL N H2 sing N N 158 VAL CA C sing N N 159 VAL CA CB sing N N 160 VAL CA HA sing N N 161 VAL C O doub N N 162 VAL C OXT sing N N 163 VAL CB CG1 sing N N 164 VAL CB CG2 sing N N 165 VAL CB HB sing N N 166 VAL CG1 HG11 sing N N 167 VAL CG1 HG12 sing N N 168 VAL CG1 HG13 sing N N 169 VAL CG2 HG21 sing N N 170 VAL CG2 HG22 sing N N 171 VAL CG2 HG23 sing N N 172 VAL OXT HXT sing N N 173 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 4G13 _pdbx_initial_refinement_model.details 'PDB ENTRY 4G13' #