HEADER OXIDOREDUCTASE 11-JUL-12 4G1V TITLE X-RAY STRUCTURE OF YEAST FLAVOHEMOGLOBIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: FLAVOHEMOGLOBIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 307796; SOURCE 5 STRAIN: YJM789; SOURCE 6 GENE: YHB1, SCY_2125; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PRSET 6A KEYWDS THREE DOMAINS: GLOBIN FOLD, ANTIPARALLEL BETA-BARREL, ALPHA/BETA KEYWDS 2 FOLD, RESP., HEM, FAD, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR E.EL HAMMI,E.WARKENTIN,U.DEMMER,L.BACIOU,U.ERMLER REVDAT 3 28-FEB-24 4G1V 1 REMARK LINK REVDAT 2 19-DEC-12 4G1V 1 JRNL REVDAT 1 14-NOV-12 4G1V 0 JRNL AUTH E.EL HAMMI,E.WARKENTIN,U.DEMMER,N.M.MARZOUKI,U.ERMLER, JRNL AUTH 2 L.BACIOU JRNL TITL ACTIVE SITE ANALYSIS OF YEAST FLAVOHEMOGLOBIN BASED ON ITS JRNL TITL 2 STRUCTURE WITH A SMALL LIGAND OR ECONAZOLE. JRNL REF FEBS J. V. 279 4565 2012 JRNL REFN ISSN 1742-464X JRNL PMID 23095020 JRNL DOI 10.1111/FEBS.12043 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0095 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.10 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 25903 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1374 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1853 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.75 REMARK 3 BIN R VALUE (WORKING SET) : 0.2070 REMARK 3 BIN FREE R VALUE SET COUNT : 111 REMARK 3 BIN FREE R VALUE : 0.2900 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3126 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 100 REMARK 3 SOLVENT ATOMS : 177 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.56 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.17000 REMARK 3 B22 (A**2) : 1.17000 REMARK 3 B33 (A**2) : -1.75000 REMARK 3 B12 (A**2) : 0.58000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.200 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.192 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.137 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.259 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.936 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3315 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4506 ; 1.587 ; 2.000 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 399 ; 5.734 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 505 ; 0.122 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2384 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 6 A 154 REMARK 3 RESIDUE RANGE : A 401 A 401 REMARK 3 ORIGIN FOR THE GROUP (A): 5.4230 35.8910 -8.7950 REMARK 3 T TENSOR REMARK 3 T11: 0.0978 T22: 0.1258 REMARK 3 T33: 0.0229 T12: 0.0014 REMARK 3 T13: 0.0124 T23: -0.0143 REMARK 3 L TENSOR REMARK 3 L11: 3.0846 L22: 4.4375 REMARK 3 L33: 2.6302 L12: -2.7628 REMARK 3 L13: -1.4967 L23: 1.5181 REMARK 3 S TENSOR REMARK 3 S11: 0.0740 S12: 0.2305 S13: -0.0490 REMARK 3 S21: -0.3941 S22: -0.1901 S23: -0.1178 REMARK 3 S31: -0.1490 S32: -0.1205 S33: 0.1161 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 155 A 259 REMARK 3 RESIDUE RANGE : A 402 A 402 REMARK 3 ORIGIN FOR THE GROUP (A): -1.6000 50.7520 10.8990 REMARK 3 T TENSOR REMARK 3 T11: 0.1023 T22: 0.1022 REMARK 3 T33: 0.0469 T12: 0.0394 REMARK 3 T13: 0.0155 T23: -0.0533 REMARK 3 L TENSOR REMARK 3 L11: 0.9239 L22: 4.3530 REMARK 3 L33: 5.1255 L12: 0.3044 REMARK 3 L13: -0.6759 L23: 0.9582 REMARK 3 S TENSOR REMARK 3 S11: 0.1125 S12: -0.2103 S13: 0.1736 REMARK 3 S21: -0.2574 S22: -0.1818 S23: -0.0476 REMARK 3 S31: -0.3862 S32: -0.1815 S33: 0.0692 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 260 A 397 REMARK 3 ORIGIN FOR THE GROUP (A): -6.2120 29.3000 19.0740 REMARK 3 T TENSOR REMARK 3 T11: 0.1035 T22: 0.1335 REMARK 3 T33: 0.0573 T12: -0.0675 REMARK 3 T13: 0.0468 T23: -0.0426 REMARK 3 L TENSOR REMARK 3 L11: 3.3622 L22: 1.5728 REMARK 3 L33: 4.3291 L12: 0.3241 REMARK 3 L13: -0.9891 L23: 0.8443 REMARK 3 S TENSOR REMARK 3 S11: -0.1135 S12: -0.0661 S13: -0.2970 REMARK 3 S21: 0.1547 S22: -0.1007 S23: 0.1242 REMARK 3 S31: 0.4897 S32: -0.3918 S33: 0.2142 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4G1V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-JUL-12. REMARK 100 THE DEPOSITION ID IS D_1000073632. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-JUL-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27278 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.098 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.05200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.14 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2M AMMONIUM SULPHATE, 0.1M TRIS HCL, REMARK 280 PH 8.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 86.31450 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 49.83370 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 27.43133 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 86.31450 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 49.83370 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 27.43133 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 86.31450 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 49.83370 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 27.43133 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 86.31450 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 49.83370 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 27.43133 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 86.31450 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 49.83370 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 27.43133 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 86.31450 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 49.83370 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 27.43133 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 99.66740 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 54.86267 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 99.66740 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 54.86267 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 99.66740 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 54.86267 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 99.66740 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 54.86267 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 99.66740 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 54.86267 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 99.66740 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 54.86267 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 16180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 95900 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -81.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 4 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 5 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2270 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35080 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 K K A 403 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 5 CG CD CE NZ REMARK 470 GLN A 398 CG CD OE1 NE2 REMARK 470 VAL A 399 CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 560 O HOH A 642 2.00 REMARK 500 O HOH A 504 O HOH A 623 2.15 REMARK 500 O HOH A 539 O HOH A 645 2.15 REMARK 500 ND1 HIS A 386 O HOH A 601 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 212 CB CYS A 212 SG -0.119 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 3 107.34 86.19 REMARK 500 ASP A 70 82.57 -166.40 REMARK 500 GLN A 89 31.98 70.30 REMARK 500 SER A 181 56.55 -117.28 REMARK 500 GLU A 231 127.30 -30.18 REMARK 500 ASN A 232 -78.28 98.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 403 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 38 OE2 REMARK 620 2 GLU A 38 OE1 44.2 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 401 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 85 NE2 REMARK 620 2 HEM A 401 NA 94.2 REMARK 620 3 HEM A 401 NB 84.9 92.5 REMARK 620 4 HEM A 401 NC 86.2 179.2 86.9 REMARK 620 5 HEM A 401 ND 95.8 87.6 179.3 93.0 REMARK 620 6 NO2 A 404 O1 174.1 90.1 90.9 89.5 88.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO2 A 404 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1CQX RELATED DB: PDB REMARK 900 FLAVOHEMOGLOBIN FROM ALCALIGENES EUTROPHUS REMARK 900 RELATED ID: 3OZU RELATED DB: PDB REMARK 900 FLAVOHEMOGLOBIN FROM R. EUTROPHUS IN COMPLEX WITH MICONAZOLE REMARK 900 RELATED ID: 3OZW RELATED DB: PDB REMARK 900 FLAVOHEMOGLOBIN FROM R. EUTROPHUS IN COMPLEX WITH KETOCONAZOLE REMARK 900 RELATED ID: 3OZV RELATED DB: PDB REMARK 900 FLAVOHEMOGLOBIN FROM R. EUTROPHUS IN COMPLEX WITH ECONAZOLE DBREF 4G1V A 1 399 UNP A6ZUP2 A6ZUP2_YEAS7 1 399 SEQRES 1 A 399 MET LEU ALA GLU LYS THR ARG SER ILE ILE LYS ALA THR SEQRES 2 A 399 VAL PRO VAL LEU GLU GLN GLN GLY THR VAL ILE THR ARG SEQRES 3 A 399 THR PHE TYR LYS ASN MET LEU THR GLU HIS THR GLU LEU SEQRES 4 A 399 LEU ASN ILE PHE ASN ARG THR ASN GLN LYS VAL GLY ALA SEQRES 5 A 399 GLN PRO ASN ALA LEU ALA THR THR VAL LEU ALA ALA ALA SEQRES 6 A 399 LYS ASN ILE ASP ASP LEU SER VAL LEU MET ASP HIS VAL SEQRES 7 A 399 LYS GLN ILE GLY HIS LYS HIS ARG ALA LEU GLN ILE LYS SEQRES 8 A 399 PRO GLU HIS TYR PRO ILE VAL GLY GLU TYR LEU LEU LYS SEQRES 9 A 399 ALA ILE LYS GLU VAL LEU GLY ASP ALA ALA THR PRO GLU SEQRES 10 A 399 ILE ILE ASN ALA TRP GLY GLU ALA TYR GLN ALA ILE ALA SEQRES 11 A 399 ASP ILE PHE ILE THR VAL GLU LYS LYS MET TYR GLU GLU SEQRES 12 A 399 ALA LEU TRP PRO GLY TRP LYS PRO PHE GLU ILE THR ALA SEQRES 13 A 399 LYS GLU TYR VAL ALA SER ASP ILE VAL GLU PHE THR VAL SEQRES 14 A 399 LYS PRO LYS PHE GLY SER GLY ILE GLU LEU GLU SER LEU SEQRES 15 A 399 PRO ILE THR PRO GLY GLN TYR ILE THR VAL ASN THR HIS SEQRES 16 A 399 PRO ILE ARG GLN GLU ASN GLN TYR ASP ALA LEU ARG HIS SEQRES 17 A 399 TYR SER LEU CYS SER ALA SER THR LYS ASN GLY LEU ARG SEQRES 18 A 399 PHE ALA VAL LYS MET GLU ALA ALA ARG GLU ASN PHE PRO SEQRES 19 A 399 ALA GLY LEU VAL SER GLU TYR LEU HIS LYS ASP ALA LYS SEQRES 20 A 399 VAL GLY ASP GLU ILE LYS LEU SER ALA PRO ALA GLY ASP SEQRES 21 A 399 PHE ALA ILE ASN LYS GLU LEU ILE HIS GLN ASN GLU VAL SEQRES 22 A 399 PRO LEU VAL LEU LEU SER SER GLY VAL GLY VAL THR PRO SEQRES 23 A 399 LEU LEU ALA MET LEU GLU GLU GLN VAL LYS CYS ASN PRO SEQRES 24 A 399 ASN ARG PRO ILE TYR TRP ILE GLN SER SER TYR ASP GLU SEQRES 25 A 399 LYS THR GLN ALA PHE LYS LYS HIS VAL ASP GLU LEU LEU SEQRES 26 A 399 ALA GLU CYS ALA ASN VAL ASP LYS ILE ILE VAL HIS THR SEQRES 27 A 399 ASP THR GLU PRO LEU ILE ASN ALA ALA PHE LEU LYS GLU SEQRES 28 A 399 LYS SER PRO ALA HIS ALA ASP VAL TYR THR CYS GLY SER SEQRES 29 A 399 LEU ALA PHE MET GLN ALA MET ILE GLY HIS LEU LYS GLU SEQRES 30 A 399 LEU GLU HIS ARG ASP ASP MET ILE HIS TYR GLU PRO PHE SEQRES 31 A 399 GLY PRO LYS MET SER THR VAL GLN VAL HET HEM A 401 43 HET FAD A 402 53 HET K A 403 1 HET NO2 A 404 3 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM K POTASSIUM ION HETNAM NO2 NITRITE ION HETSYN HEM HEME FORMUL 2 HEM C34 H32 FE N4 O4 FORMUL 3 FAD C27 H33 N9 O15 P2 FORMUL 4 K K 1+ FORMUL 5 NO2 N O2 1- FORMUL 6 HOH *177(H2 O) HELIX 1 1 ALA A 3 THR A 13 1 11 HELIX 2 2 THR A 13 HIS A 36 1 24 HELIX 3 3 THR A 37 ILE A 42 5 6 HELIX 4 4 ASN A 44 VAL A 50 1 7 HELIX 5 5 ALA A 52 ASN A 67 1 16 HELIX 6 6 ASP A 70 VAL A 73 5 4 HELIX 7 7 LEU A 74 LEU A 88 1 15 HELIX 8 8 LYS A 91 GLU A 93 5 3 HELIX 9 9 HIS A 94 GLY A 111 1 18 HELIX 10 10 ASP A 112 ALA A 114 5 3 HELIX 11 11 THR A 115 ALA A 144 1 30 HELIX 12 12 GLU A 178 LEU A 182 5 5 HELIX 13 13 GLY A 236 ASP A 245 1 10 HELIX 14 14 GLY A 283 ASN A 298 1 16 HELIX 15 15 PHE A 317 ALA A 326 1 10 HELIX 16 16 ASN A 345 SER A 353 1 9 HELIX 17 17 SER A 364 LEU A 378 1 15 HELIX 18 18 ARG A 381 ASP A 383 5 3 HELIX 19 19 PRO A 392 VAL A 397 5 6 SHEET 1 A 6 ALA A 205 SER A 210 0 SHEET 2 A 6 TYR A 189 THR A 194 -1 N THR A 194 O ALA A 205 SHEET 3 A 6 GLU A 251 ALA A 258 -1 O ALA A 258 N TYR A 189 SHEET 4 A 6 LYS A 150 ALA A 161 -1 N PHE A 152 O ILE A 252 SHEET 5 A 6 ILE A 164 PRO A 171 -1 O GLU A 166 N GLU A 158 SHEET 6 A 6 LEU A 220 LYS A 225 -1 O PHE A 222 N PHE A 167 SHEET 1 B 5 VAL A 331 HIS A 337 0 SHEET 2 B 5 ILE A 303 SER A 309 1 N TRP A 305 O ILE A 334 SHEET 3 B 5 LEU A 275 SER A 280 1 N LEU A 277 O TYR A 304 SHEET 4 B 5 ASP A 358 GLY A 363 1 O TYR A 360 N LEU A 278 SHEET 5 B 5 ILE A 385 PRO A 389 1 O HIS A 386 N VAL A 359 LINK OE2 GLU A 38 K K A 403 1555 1555 2.41 LINK OE1 GLU A 38 K K A 403 1555 1555 3.12 LINK NE2 HIS A 85 FE HEM A 401 1555 1555 2.11 LINK FE HEM A 401 O1 NO2 A 404 1555 1555 1.96 SITE 1 AC1 22 ILE A 42 PHE A 43 ASN A 47 GLN A 53 SITE 2 AC1 22 ALA A 56 THR A 60 GLN A 80 ILE A 81 SITE 3 AC1 22 LYS A 84 HIS A 85 LEU A 88 ILE A 90 SITE 4 AC1 22 HIS A 94 TYR A 95 VAL A 98 TYR A 126 SITE 5 AC1 22 PRO A 392 LYS A 393 MET A 394 NO2 A 404 SITE 6 AC1 22 HOH A 604 HOH A 675 SITE 1 AC2 30 ASN A 44 THR A 46 VAL A 50 LYS A 84 SITE 2 AC2 30 GLU A 108 TYR A 189 ARG A 207 HIS A 208 SITE 3 AC2 30 TYR A 209 SER A 210 ALA A 223 VAL A 224 SITE 4 AC2 30 LYS A 225 GLU A 227 ARG A 230 PHE A 233 SITE 5 AC2 30 PRO A 234 GLY A 236 LEU A 237 VAL A 238 SITE 6 AC2 30 SER A 239 VAL A 282 THR A 285 PHE A 390 SITE 7 AC2 30 GLY A 391 HOH A 502 HOH A 507 HOH A 512 SITE 8 AC2 30 HOH A 521 HOH A 633 SITE 1 AC3 2 HIS A 36 GLU A 38 SITE 1 AC4 3 TYR A 29 GLN A 53 HEM A 401 CRYST1 172.629 172.629 82.294 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005793 0.003344 0.000000 0.00000 SCALE2 0.000000 0.006689 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012152 0.00000