HEADER OXIDOREDUCTASE 15-JUL-12 4G3U TITLE MYCOBACTERIUM SMEGMATIS DPRE1 - MONOCLINIC CRYSTAL FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: OXIDOREDUCTASE DPRE1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 66-468; COMPND 5 EC: 1.-.-.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM SMEGMATIS; SOURCE 3 ORGANISM_TAXID: 1772; SOURCE 4 STRAIN: ATCC607; SOURCE 5 GENE: MSMEG_6382; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21STAR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS VAO SUPERFAMILY, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR H.LI,G.JOGL REVDAT 3 28-FEB-24 4G3U 1 REMARK REVDAT 2 28-AUG-13 4G3U 1 JRNL REVDAT 1 05-DEC-12 4G3U 0 JRNL AUTH H.LI,G.JOGL JRNL TITL CRYSTAL STRUCTURE OF DECAPRENYLPHOSPHORYL-BETA- D-RIBOSE JRNL TITL 2 2'-EPIMERASE FROM MYCOBACTERIUM SMEGMATIS. JRNL REF PROTEINS V. 81 538 2013 JRNL REFN ISSN 0887-3585 JRNL PMID 23184707 JRNL DOI 10.1002/PROT.24220 REMARK 2 REMARK 2 RESOLUTION. 2.69 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_1000 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.69 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.20 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.8 REMARK 3 NUMBER OF REFLECTIONS : 36552 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.222 REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 1838 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.1992 - 6.3107 0.88 2598 160 0.2041 0.2297 REMARK 3 2 6.3107 - 5.0141 0.90 2615 129 0.1962 0.2231 REMARK 3 3 5.0141 - 4.3817 0.92 2636 149 0.1592 0.1580 REMARK 3 4 4.3817 - 3.9818 0.92 2686 127 0.1702 0.1930 REMARK 3 5 3.9818 - 3.6967 0.93 2656 142 0.2139 0.2498 REMARK 3 6 3.6967 - 3.4790 0.93 2685 131 0.2669 0.3077 REMARK 3 7 3.4790 - 3.3049 0.94 2681 156 0.2355 0.2978 REMARK 3 8 3.3049 - 3.1612 0.95 2705 139 0.2297 0.3012 REMARK 3 9 3.1612 - 3.0395 0.95 2728 142 0.2440 0.2908 REMARK 3 10 3.0395 - 2.9347 0.95 2715 163 0.2586 0.2874 REMARK 3 11 2.9347 - 2.8430 0.95 2703 133 0.2686 0.3084 REMARK 3 12 2.8430 - 2.7618 0.96 2719 131 0.2819 0.3729 REMARK 3 13 2.7618 - 2.6890 0.89 2587 136 0.3208 0.3660 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.86 REMARK 3 K_SOL : 0.31 REMARK 3 B_SOL : 25.98 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.390 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.670 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 45.66 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.72 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.67290 REMARK 3 B22 (A**2) : -6.12840 REMARK 3 B33 (A**2) : 7.61370 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 7.28740 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 5502 REMARK 3 ANGLE : 0.715 7468 REMARK 3 CHIRALITY : 0.049 824 REMARK 3 PLANARITY : 0.003 972 REMARK 3 DIHEDRAL : 12.247 1978 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND ( RESID 75 THROUGH 115 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.9657 -7.4717 -5.4227 REMARK 3 T TENSOR REMARK 3 T11: 0.1245 T22: 0.1308 REMARK 3 T33: 0.0764 T12: -0.0457 REMARK 3 T13: -0.0396 T23: -0.0895 REMARK 3 L TENSOR REMARK 3 L11: 0.0049 L22: 0.0067 REMARK 3 L33: 0.0048 L12: 0.0021 REMARK 3 L13: 0.0028 L23: 0.0071 REMARK 3 S TENSOR REMARK 3 S11: -0.0142 S12: 0.0421 S13: 0.0089 REMARK 3 S21: -0.0033 S22: -0.0085 S23: 0.0111 REMARK 3 S31: -0.0330 S32: -0.0103 S33: -0.0051 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND ( RESID 116 THROUGH 148 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.6859 -3.3772 -2.6647 REMARK 3 T TENSOR REMARK 3 T11: -0.0424 T22: 0.1408 REMARK 3 T33: 0.2056 T12: -0.0100 REMARK 3 T13: -0.0948 T23: -0.0313 REMARK 3 L TENSOR REMARK 3 L11: 0.0032 L22: 0.0024 REMARK 3 L33: -0.0010 L12: 0.0011 REMARK 3 L13: 0.0020 L23: -0.0009 REMARK 3 S TENSOR REMARK 3 S11: -0.0020 S12: 0.0157 S13: -0.0079 REMARK 3 S21: -0.0185 S22: -0.0107 S23: 0.0206 REMARK 3 S31: -0.0090 S32: -0.0184 S33: -0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND ( RESID 149 THROUGH 389 ) REMARK 3 ORIGIN FOR THE GROUP (A): -35.1237 -1.9111 -0.7804 REMARK 3 T TENSOR REMARK 3 T11: -0.3906 T22: 0.0913 REMARK 3 T33: 0.3581 T12: 0.1083 REMARK 3 T13: -0.0605 T23: 0.0118 REMARK 3 L TENSOR REMARK 3 L11: 0.0174 L22: 0.0162 REMARK 3 L33: 0.0356 L12: -0.0119 REMARK 3 L13: -0.0150 L23: -0.0062 REMARK 3 S TENSOR REMARK 3 S11: 0.0289 S12: 0.0071 S13: 0.0201 REMARK 3 S21: -0.0158 S22: -0.0022 S23: 0.1227 REMARK 3 S31: -0.0814 S32: 0.1051 S33: 0.0259 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND ( RESID 390 THROUGH 417 ) REMARK 3 ORIGIN FOR THE GROUP (A): -42.9915 14.6432 -9.3889 REMARK 3 T TENSOR REMARK 3 T11: 0.1580 T22: 0.1865 REMARK 3 T33: 0.3899 T12: -0.0015 REMARK 3 T13: -0.0560 T23: 0.0075 REMARK 3 L TENSOR REMARK 3 L11: 0.0033 L22: 0.0003 REMARK 3 L33: 0.0013 L12: 0.0004 REMARK 3 L13: 0.0012 L23: -0.0024 REMARK 3 S TENSOR REMARK 3 S11: 0.0410 S12: 0.0075 S13: 0.0126 REMARK 3 S21: -0.0447 S22: 0.0283 S23: 0.0010 REMARK 3 S31: -0.0169 S32: 0.0035 S33: -0.0000 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND ( RESID 418 THROUGH 468 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.7087 18.4019 -3.6258 REMARK 3 T TENSOR REMARK 3 T11: 0.0838 T22: 0.1764 REMARK 3 T33: 0.2293 T12: -0.0083 REMARK 3 T13: -0.0482 T23: 0.0613 REMARK 3 L TENSOR REMARK 3 L11: 0.0013 L22: 0.0100 REMARK 3 L33: 0.0032 L12: -0.0032 REMARK 3 L13: -0.0020 L23: 0.0049 REMARK 3 S TENSOR REMARK 3 S11: -0.0324 S12: -0.0069 S13: 0.0201 REMARK 3 S21: -0.0014 S22: -0.0471 S23: 0.0485 REMARK 3 S31: -0.0404 S32: 0.0464 S33: -0.0143 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND ( RESID 75 THROUGH 115 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.0028 -11.8893 16.6156 REMARK 3 T TENSOR REMARK 3 T11: 0.1609 T22: 0.1578 REMARK 3 T33: 0.0524 T12: 0.0194 REMARK 3 T13: -0.0100 T23: -0.0178 REMARK 3 L TENSOR REMARK 3 L11: 0.0034 L22: 0.0165 REMARK 3 L33: 0.0027 L12: 0.0030 REMARK 3 L13: 0.0035 L23: -0.0019 REMARK 3 S TENSOR REMARK 3 S11: 0.0171 S12: -0.0215 S13: -0.0162 REMARK 3 S21: 0.0127 S22: 0.0125 S23: -0.0256 REMARK 3 S31: -0.0199 S32: 0.0277 S33: 0.0067 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND ( RESID 116 THROUGH 148 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.6713 -16.2307 27.7042 REMARK 3 T TENSOR REMARK 3 T11: 0.4334 T22: 0.2387 REMARK 3 T33: 0.0566 T12: -0.0061 REMARK 3 T13: 0.0455 T23: -0.0203 REMARK 3 L TENSOR REMARK 3 L11: 0.0022 L22: 0.0126 REMARK 3 L33: 0.0074 L12: 0.0053 REMARK 3 L13: -0.0049 L23: -0.0088 REMARK 3 S TENSOR REMARK 3 S11: 0.0229 S12: -0.0287 S13: 0.0075 REMARK 3 S21: 0.0283 S22: 0.0320 S23: -0.0156 REMARK 3 S31: 0.0028 S32: -0.0153 S33: 0.0043 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND ( RESID 149 THROUGH 389 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.1493 -17.8858 35.0608 REMARK 3 T TENSOR REMARK 3 T11: 0.2944 T22: 0.1066 REMARK 3 T33: -0.5011 T12: -0.0073 REMARK 3 T13: 0.2667 T23: 0.0364 REMARK 3 L TENSOR REMARK 3 L11: 0.0880 L22: 0.0145 REMARK 3 L33: 0.0312 L12: -0.0127 REMARK 3 L13: -0.0067 L23: 0.0349 REMARK 3 S TENSOR REMARK 3 S11: 0.0103 S12: -0.0387 S13: 0.0334 REMARK 3 S21: 0.4004 S22: -0.0017 S23: -0.0127 REMARK 3 S31: -0.1203 S32: -0.0305 S33: -0.0258 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND ( RESID 390 THROUGH 417 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.9086 -35.0165 44.5014 REMARK 3 T TENSOR REMARK 3 T11: 0.5967 T22: 0.3338 REMARK 3 T33: 0.3111 T12: 0.0226 REMARK 3 T13: 0.1371 T23: 0.0356 REMARK 3 L TENSOR REMARK 3 L11: 0.0003 L22: 0.0004 REMARK 3 L33: 0.0056 L12: -0.0015 REMARK 3 L13: -0.0012 L23: 0.0005 REMARK 3 S TENSOR REMARK 3 S11: -0.0309 S12: -0.0088 S13: -0.0417 REMARK 3 S21: 0.0203 S22: -0.0228 S23: -0.0390 REMARK 3 S31: 0.0000 S32: 0.0004 S33: 0.0000 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND ( RESID 418 THROUGH 468 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.4459 -37.9206 24.2371 REMARK 3 T TENSOR REMARK 3 T11: 0.2830 T22: 0.1428 REMARK 3 T33: 0.0273 T12: 0.0530 REMARK 3 T13: 0.0295 T23: 0.0282 REMARK 3 L TENSOR REMARK 3 L11: 0.0054 L22: 0.0024 REMARK 3 L33: 0.0088 L12: -0.0013 REMARK 3 L13: -0.0052 L23: 0.0007 REMARK 3 S TENSOR REMARK 3 S11: 0.0068 S12: -0.0016 S13: -0.0124 REMARK 3 S21: 0.0569 S22: -0.0214 S23: 0.0166 REMARK 3 S31: 0.0285 S32: -0.0159 S33: -0.0046 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN 'A' AND (RESSEQ 86:274 OR RESSEQ REMARK 3 308:322 OR RESSEQ 338:468 ) REMARK 3 SELECTION : CHAIN 'B' AND (RESSEQ 86:274 OR RESSEQ REMARK 3 308:322 OR RESSEQ 338:468 ) REMARK 3 ATOM PAIRS NUMBER : 2610 REMARK 3 RMSD : 0.011 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4G3U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-AUG-12. REMARK 100 THE DEPOSITION ID IS D_1000073703. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-OCT-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X4A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : KOHZU DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE, XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36583 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.689 REMARK 200 RESOLUTION RANGE LOW (A) : 102.589 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.7 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.11300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.8300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.69 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.62500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.340 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% BUTANOL, 0.2 M SODIUM CHLORIDE, REMARK 280 0.1 M TRIS, 0.5% N,N-DIMETHYLDODECYLAMINE-N-OXIDE, PH 7.5, REMARK 280 SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 32.90400 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 66 REMARK 465 TYR A 67 REMARK 465 GLY A 68 REMARK 465 ASP A 69 REMARK 465 ASN A 70 REMARK 465 ALA A 71 REMARK 465 GLN A 72 REMARK 465 ASN A 73 REMARK 465 GLY A 74 REMARK 465 ASP A 275 REMARK 465 ALA A 276 REMARK 465 PRO A 277 REMARK 465 GLN A 278 REMARK 465 LEU A 279 REMARK 465 LEU A 280 REMARK 465 THR A 281 REMARK 465 LEU A 282 REMARK 465 PRO A 283 REMARK 465 ASP A 284 REMARK 465 ILE A 285 REMARK 465 PHE A 286 REMARK 465 PRO A 287 REMARK 465 ASN A 288 REMARK 465 GLY A 289 REMARK 465 LEU A 290 REMARK 465 ALA A 291 REMARK 465 ASN A 292 REMARK 465 LYS A 293 REMARK 465 PHE A 294 REMARK 465 THR A 295 REMARK 465 PHE A 296 REMARK 465 MET A 297 REMARK 465 PRO A 298 REMARK 465 ILE A 299 REMARK 465 GLY A 300 REMARK 465 GLU A 301 REMARK 465 LEU A 302 REMARK 465 TRP A 303 REMARK 465 TYR A 304 REMARK 465 ARG A 305 REMARK 465 LYS A 306 REMARK 465 SER A 307 REMARK 465 PRO A 323 REMARK 465 LEU A 324 REMARK 465 ASP A 325 REMARK 465 MET A 326 REMARK 465 PHE A 327 REMARK 465 GLY A 328 REMARK 465 GLU A 329 REMARK 465 TRP A 330 REMARK 465 ASN A 331 REMARK 465 ARG A 332 REMARK 465 ALA A 333 REMARK 465 TYR A 334 REMARK 465 GLY A 335 REMARK 465 SER A 336 REMARK 465 ALA A 337 REMARK 465 SER B 66 REMARK 465 TYR B 67 REMARK 465 GLY B 68 REMARK 465 ASP B 69 REMARK 465 ASN B 70 REMARK 465 ALA B 71 REMARK 465 GLN B 72 REMARK 465 ASN B 73 REMARK 465 GLY B 74 REMARK 465 ASP B 275 REMARK 465 ALA B 276 REMARK 465 PRO B 277 REMARK 465 GLN B 278 REMARK 465 LEU B 279 REMARK 465 LEU B 280 REMARK 465 THR B 281 REMARK 465 LEU B 282 REMARK 465 PRO B 283 REMARK 465 ASP B 284 REMARK 465 ILE B 285 REMARK 465 PHE B 286 REMARK 465 PRO B 287 REMARK 465 ASN B 288 REMARK 465 GLY B 289 REMARK 465 LEU B 290 REMARK 465 ALA B 291 REMARK 465 ASN B 292 REMARK 465 LYS B 293 REMARK 465 PHE B 294 REMARK 465 THR B 295 REMARK 465 PHE B 296 REMARK 465 MET B 297 REMARK 465 PRO B 298 REMARK 465 ILE B 299 REMARK 465 GLY B 300 REMARK 465 GLU B 301 REMARK 465 LEU B 302 REMARK 465 TRP B 303 REMARK 465 TYR B 304 REMARK 465 ARG B 305 REMARK 465 LYS B 306 REMARK 465 SER B 307 REMARK 465 PRO B 323 REMARK 465 LEU B 324 REMARK 465 ASP B 325 REMARK 465 MET B 326 REMARK 465 PHE B 327 REMARK 465 GLY B 328 REMARK 465 GLU B 329 REMARK 465 TRP B 330 REMARK 465 ASN B 331 REMARK 465 ARG B 332 REMARK 465 ALA B 333 REMARK 465 TYR B 334 REMARK 465 GLY B 335 REMARK 465 SER B 336 REMARK 465 ALA B 337 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 528 O HOH A 529 1.82 REMARK 500 N GLY A 308 O HOH A 635 1.84 REMARK 500 O HOH A 620 O HOH A 630 1.88 REMARK 500 O HOH A 619 O HOH A 621 1.89 REMARK 500 O HOH A 535 O HOH A 643 1.95 REMARK 500 O HOH B 566 O HOH B 570 1.95 REMARK 500 O ALA A 204 O HOH A 516 1.97 REMARK 500 O HOH A 569 O HOH A 571 1.98 REMARK 500 O PRO B 173 O HOH B 504 2.00 REMARK 500 O HOH A 570 O HOH A 587 2.02 REMARK 500 OG SER A 256 O HOH A 573 2.04 REMARK 500 O HOH B 584 O HOH B 587 2.04 REMARK 500 OH TYR A 321 O HOH A 521 2.05 REMARK 500 OD1 ASP B 91 O HOH B 507 2.05 REMARK 500 O HOH A 537 O HOH A 598 2.06 REMARK 500 O HOH A 637 O HOH A 672 2.06 REMARK 500 O GLU A 409 O HOH A 610 2.07 REMARK 500 O HOH B 537 O HOH B 541 2.07 REMARK 500 OD2 ASP A 452 O HOH A 501 2.09 REMARK 500 O PHE B 274 O HOH B 531 2.09 REMARK 500 N ARG A 413 O HOH A 610 2.11 REMARK 500 O HOH A 632 O HOH A 652 2.11 REMARK 500 O HOH B 516 O HOH B 526 2.12 REMARK 500 OE1 GLU B 432 O HOH B 613 2.12 REMARK 500 OG SER B 242 O HOH B 571 2.12 REMARK 500 O HOH A 626 O HOH A 631 2.13 REMARK 500 O LEU B 272 O HOH B 522 2.14 REMARK 500 O HOH A 622 O HOH A 639 2.14 REMARK 500 O HOH B 536 O HOH B 539 2.14 REMARK 500 O ARG B 428 O HOH B 606 2.15 REMARK 500 OD1 ASN A 312 O HOH A 548 2.15 REMARK 500 O HOH A 551 O HOH A 567 2.15 REMARK 500 O GLY B 418 O HOH B 553 2.15 REMARK 500 O HOH B 556 O HOH B 591 2.16 REMARK 500 ND1 HIS B 322 O HOH B 581 2.16 REMARK 500 O LEU A 272 O HOH A 566 2.17 REMARK 500 O HOH A 647 O HOH A 651 2.17 REMARK 500 O HOH A 665 O HOH A 670 2.18 REMARK 500 OH TYR A 233 O HOH A 536 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 81 79.10 -119.86 REMARK 500 LEU A 84 47.29 -84.79 REMARK 500 PRO A 123 -158.99 -77.83 REMARK 500 ILE A 399 86.06 -69.37 REMARK 500 ALA A 424 -167.30 -102.03 REMARK 500 ASN B 85 39.18 -142.92 REMARK 500 PRO B 123 -158.94 -77.80 REMARK 500 ALA B 424 -167.19 -101.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4G3T RELATED DB: PDB DBREF 4G3U A 66 468 UNP A0R607 A0R607_MYCS2 66 468 DBREF 4G3U B 66 468 UNP A0R607 A0R607_MYCS2 66 468 SEQRES 1 A 403 SER TYR GLY ASP ASN ALA GLN ASN GLY GLY GLY LEU VAL SEQRES 2 A 403 ILE ASP MET PRO ALA LEU ASN ARG ILE HIS SER ILE ASP SEQRES 3 A 403 SER GLY THR ARG LEU VAL ASP VAL ASP ALA GLY VAL SER SEQRES 4 A 403 LEU ASP GLN LEU MET LYS ALA ALA LEU PRO HIS GLY LEU SEQRES 5 A 403 TRP VAL PRO VAL LEU PRO GLY THR ARG GLN VAL THR VAL SEQRES 6 A 403 GLY GLY ALA ILE GLY CYS ASP ILE HIS GLY LYS ASN HIS SEQRES 7 A 403 HIS SER ALA GLY SER PHE GLY ASN HIS VAL ARG SER MET SEQRES 8 A 403 GLU LEU LEU THR ALA ASN GLY GLU VAL ARG HIS LEU THR SEQRES 9 A 403 PRO ALA GLY PRO ASP SER ASP LEU PHE TRP ALA THR VAL SEQRES 10 A 403 GLY GLY ASN GLY LEU THR GLY ILE ILE LEU ARG ALA THR SEQRES 11 A 403 ILE GLU MET THR PRO THR GLU THR ALA TYR PHE ILE ALA SEQRES 12 A 403 ASP GLY ASP VAL THR GLY SER LEU ASP GLU THR ILE ALA SEQRES 13 A 403 PHE HIS SER ASP GLY SER GLU ALA ASN TYR THR TYR SER SEQRES 14 A 403 SER ALA TRP PHE ASP ALA ILE SER LYS PRO PRO LYS LEU SEQRES 15 A 403 GLY ARG ALA ALA ILE SER ARG GLY SER LEU ALA LYS LEU SEQRES 16 A 403 ASP GLN LEU PRO SER LYS LEU GLN LYS ASP PRO LEU LYS SEQRES 17 A 403 PHE ASP ALA PRO GLN LEU LEU THR LEU PRO ASP ILE PHE SEQRES 18 A 403 PRO ASN GLY LEU ALA ASN LYS PHE THR PHE MET PRO ILE SEQRES 19 A 403 GLY GLU LEU TRP TYR ARG LYS SER GLY THR TYR ARG ASN SEQRES 20 A 403 LYS VAL GLN ASN LEU THR GLN PHE TYR HIS PRO LEU ASP SEQRES 21 A 403 MET PHE GLY GLU TRP ASN ARG ALA TYR GLY SER ALA GLY SEQRES 22 A 403 PHE LEU GLN TYR GLN PHE VAL VAL PRO THR GLU ALA VAL SEQRES 23 A 403 GLU GLU PHE LYS SER ILE ILE VAL ASP ILE GLN ARG SER SEQRES 24 A 403 GLY HIS TYR SER PHE LEU ASN VAL PHE LYS LEU PHE GLY SEQRES 25 A 403 PRO GLY ASN GLN ALA PRO LEU SER PHE PRO ILE PRO GLY SEQRES 26 A 403 TRP ASN VAL CYS VAL ASP PHE PRO ILE LYS ALA GLY LEU SEQRES 27 A 403 HIS GLU PHE VAL THR GLU LEU ASP ARG ARG VAL LEU GLU SEQRES 28 A 403 PHE GLY GLY ARG LEU TYR THR ALA LYS ASP SER ARG THR SEQRES 29 A 403 THR ALA GLU THR PHE HIS ALA MET TYR PRO ARG ILE ASP SEQRES 30 A 403 GLU TRP ILE ARG ILE ARG ARG SER VAL ASP PRO ASP GLY SEQRES 31 A 403 VAL PHE ALA SER ASP MET ALA ARG ARG LEU GLN LEU LEU SEQRES 1 B 403 SER TYR GLY ASP ASN ALA GLN ASN GLY GLY GLY LEU VAL SEQRES 2 B 403 ILE ASP MET PRO ALA LEU ASN ARG ILE HIS SER ILE ASP SEQRES 3 B 403 SER GLY THR ARG LEU VAL ASP VAL ASP ALA GLY VAL SER SEQRES 4 B 403 LEU ASP GLN LEU MET LYS ALA ALA LEU PRO HIS GLY LEU SEQRES 5 B 403 TRP VAL PRO VAL LEU PRO GLY THR ARG GLN VAL THR VAL SEQRES 6 B 403 GLY GLY ALA ILE GLY CYS ASP ILE HIS GLY LYS ASN HIS SEQRES 7 B 403 HIS SER ALA GLY SER PHE GLY ASN HIS VAL ARG SER MET SEQRES 8 B 403 GLU LEU LEU THR ALA ASN GLY GLU VAL ARG HIS LEU THR SEQRES 9 B 403 PRO ALA GLY PRO ASP SER ASP LEU PHE TRP ALA THR VAL SEQRES 10 B 403 GLY GLY ASN GLY LEU THR GLY ILE ILE LEU ARG ALA THR SEQRES 11 B 403 ILE GLU MET THR PRO THR GLU THR ALA TYR PHE ILE ALA SEQRES 12 B 403 ASP GLY ASP VAL THR GLY SER LEU ASP GLU THR ILE ALA SEQRES 13 B 403 PHE HIS SER ASP GLY SER GLU ALA ASN TYR THR TYR SER SEQRES 14 B 403 SER ALA TRP PHE ASP ALA ILE SER LYS PRO PRO LYS LEU SEQRES 15 B 403 GLY ARG ALA ALA ILE SER ARG GLY SER LEU ALA LYS LEU SEQRES 16 B 403 ASP GLN LEU PRO SER LYS LEU GLN LYS ASP PRO LEU LYS SEQRES 17 B 403 PHE ASP ALA PRO GLN LEU LEU THR LEU PRO ASP ILE PHE SEQRES 18 B 403 PRO ASN GLY LEU ALA ASN LYS PHE THR PHE MET PRO ILE SEQRES 19 B 403 GLY GLU LEU TRP TYR ARG LYS SER GLY THR TYR ARG ASN SEQRES 20 B 403 LYS VAL GLN ASN LEU THR GLN PHE TYR HIS PRO LEU ASP SEQRES 21 B 403 MET PHE GLY GLU TRP ASN ARG ALA TYR GLY SER ALA GLY SEQRES 22 B 403 PHE LEU GLN TYR GLN PHE VAL VAL PRO THR GLU ALA VAL SEQRES 23 B 403 GLU GLU PHE LYS SER ILE ILE VAL ASP ILE GLN ARG SER SEQRES 24 B 403 GLY HIS TYR SER PHE LEU ASN VAL PHE LYS LEU PHE GLY SEQRES 25 B 403 PRO GLY ASN GLN ALA PRO LEU SER PHE PRO ILE PRO GLY SEQRES 26 B 403 TRP ASN VAL CYS VAL ASP PHE PRO ILE LYS ALA GLY LEU SEQRES 27 B 403 HIS GLU PHE VAL THR GLU LEU ASP ARG ARG VAL LEU GLU SEQRES 28 B 403 PHE GLY GLY ARG LEU TYR THR ALA LYS ASP SER ARG THR SEQRES 29 B 403 THR ALA GLU THR PHE HIS ALA MET TYR PRO ARG ILE ASP SEQRES 30 B 403 GLU TRP ILE ARG ILE ARG ARG SER VAL ASP PRO ASP GLY SEQRES 31 B 403 VAL PHE ALA SER ASP MET ALA ARG ARG LEU GLN LEU LEU FORMUL 3 HOH *287(H2 O) HELIX 1 1 SER A 104 LEU A 113 1 10 HELIX 2 2 THR A 129 ASP A 137 1 9 HELIX 3 3 ASN A 142 GLY A 147 1 6 HELIX 4 4 SER A 148 ASN A 151 5 4 HELIX 5 5 ASP A 174 GLY A 184 1 11 HELIX 6 6 SER A 215 HIS A 223 1 9 HELIX 7 7 GLY A 226 TYR A 231 5 6 HELIX 8 8 LYS A 259 LEU A 263 5 5 HELIX 9 9 ASN A 316 TYR A 321 1 6 HELIX 10 10 ALA A 350 GLY A 365 1 16 HELIX 11 11 GLY A 402 PHE A 417 1 16 HELIX 12 12 THR A 430 TYR A 438 1 9 HELIX 13 13 ARG A 440 ASP A 452 1 13 HELIX 14 14 SER A 459 LEU A 465 1 7 HELIX 15 15 SER B 104 LEU B 113 1 10 HELIX 16 16 THR B 129 ASP B 137 1 9 HELIX 17 17 ASN B 142 GLY B 147 1 6 HELIX 18 18 SER B 148 ASN B 151 5 4 HELIX 19 19 ASP B 174 GLY B 184 1 11 HELIX 20 20 SER B 215 HIS B 223 1 9 HELIX 21 21 GLY B 226 TYR B 231 5 6 HELIX 22 22 LYS B 259 LEU B 263 5 5 HELIX 23 23 ASN B 316 TYR B 321 1 6 HELIX 24 24 ALA B 350 GLY B 365 1 16 HELIX 25 25 GLY B 402 PHE B 417 1 16 HELIX 26 26 THR B 430 TYR B 438 1 9 HELIX 27 27 ARG B 440 ASP B 452 1 13 HELIX 28 28 SER B 459 LEU B 465 1 7 SHEET 1 A 5 ILE A 87 ASP A 91 0 SHEET 2 A 5 LEU A 96 ASP A 100 -1 O LEU A 96 N ASP A 91 SHEET 3 A 5 ILE A 190 GLU A 197 -1 O ALA A 194 N VAL A 99 SHEET 4 A 5 VAL A 153 LEU A 159 -1 N LEU A 159 O ILE A 190 SHEET 5 A 5 VAL A 165 LEU A 168 -1 O ARG A 166 N LEU A 158 SHEET 1 B 2 LEU A 117 TRP A 118 0 SHEET 2 B 2 THR A 199 PRO A 200 -1 O THR A 199 N TRP A 118 SHEET 1 C 8 TYR A 310 GLN A 315 0 SHEET 2 C 8 PHE A 206 VAL A 212 -1 N PHE A 206 O GLN A 315 SHEET 3 C 8 ALA A 250 LEU A 257 -1 O ARG A 254 N ASP A 209 SHEET 4 C 8 TYR A 233 PHE A 238 -1 N TYR A 233 O GLY A 255 SHEET 5 C 8 ASN A 371 PHE A 376 -1 O PHE A 373 N ALA A 236 SHEET 6 C 8 GLY A 390 PRO A 398 -1 O ASN A 392 N LYS A 374 SHEET 7 C 8 PHE A 339 PRO A 347 -1 N VAL A 346 O TRP A 391 SHEET 8 C 8 ARG A 420 LEU A 421 -1 O ARG A 420 N VAL A 345 SHEET 1 D 5 ILE B 87 ASP B 91 0 SHEET 2 D 5 LEU B 96 ASP B 100 -1 O LEU B 96 N ASP B 91 SHEET 3 D 5 ILE B 190 GLU B 197 -1 O ALA B 194 N VAL B 99 SHEET 4 D 5 VAL B 153 LEU B 159 -1 N LEU B 159 O ILE B 190 SHEET 5 D 5 VAL B 165 LEU B 168 -1 O ARG B 166 N LEU B 158 SHEET 1 E 2 LEU B 117 TRP B 118 0 SHEET 2 E 2 THR B 199 PRO B 200 -1 O THR B 199 N TRP B 118 SHEET 1 F 8 TYR B 310 GLN B 315 0 SHEET 2 F 8 PHE B 206 VAL B 212 -1 N PHE B 206 O GLN B 315 SHEET 3 F 8 ALA B 250 LEU B 257 -1 O ARG B 254 N ASP B 209 SHEET 4 F 8 TYR B 233 PHE B 238 -1 N SER B 235 O SER B 253 SHEET 5 F 8 ASN B 371 PHE B 376 -1 O PHE B 373 N ALA B 236 SHEET 6 F 8 GLY B 390 PRO B 398 -1 O ASN B 392 N LYS B 374 SHEET 7 F 8 PHE B 339 PRO B 347 -1 N VAL B 346 O TRP B 391 SHEET 8 F 8 ARG B 420 LEU B 421 -1 O ARG B 420 N VAL B 345 CISPEP 1 PRO A 244 PRO A 245 0 5.19 CISPEP 2 SER A 427 ARG A 428 0 9.60 CISPEP 3 PRO B 244 PRO B 245 0 5.06 CISPEP 4 SER B 427 ARG B 428 0 9.30 CRYST1 105.152 65.808 108.504 90.00 109.00 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009510 0.000000 0.003275 0.00000 SCALE2 0.000000 0.015196 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009748 0.00000