HEADER LIGASE/LIGASE INHIBITOR 17-JUL-12 4G5F TITLE PANTOTHENATE SYNTHETASE IN COMPLEX WITH RACEMATE (2S)-2,3-DIHYDRO-1,4- TITLE 2 BENZODIOXINE-2-CARBOXYLIC ACID AND (2R)-2,3-DIHYDRO-1,4-BENZODIOXINE- TITLE 3 2-CARBOXYLIC ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: PANTOTHENATE SYNTHETASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PS, PANTOATE--BETA-ALANINE LIGASE, PANTOATE-ACTIVATING COMPND 5 ENZYME; COMPND 6 EC: 6.3.2.1; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 STRAIN: H37RV; SOURCE 5 GENE: MT3707, MTCY07H7B.20, PANC, RV3602C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA2; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET30B KEYWDS ALPHA BETA 3-LAYER(ABA) SANDWICH ROSSMANN FOLD, LIGASE, ATP BINDING KEYWDS 2 PANTOATE BINDING BETA-ALANINE BINDING, LIGASE-LIGASE INHIBITOR KEYWDS 3 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR H.L.SILVESTRE,T.L.BLUNDELL,C.ABELL,A.CIULLI REVDAT 4 13-SEP-23 4G5F 1 REMARK SEQADV REVDAT 3 04-SEP-13 4G5F 1 JRNL REVDAT 2 07-AUG-13 4G5F 1 JRNL REVDAT 1 17-JUL-13 4G5F 0 JRNL AUTH H.L.SILVESTRE,T.L.BLUNDELL,C.ABELL,A.CIULLI JRNL TITL INTEGRATED BIOPHYSICAL APPROACH TO FRAGMENT SCREENING AND JRNL TITL 2 VALIDATION FOR FRAGMENT-BASED LEAD DISCOVERY. JRNL REF PROC.NATL.ACAD.SCI.USA V. 110 12984 2013 JRNL REFN ISSN 0027-8424 JRNL PMID 23872845 JRNL DOI 10.1073/PNAS.1304045110 REMARK 2 REMARK 2 RESOLUTION. 2.33 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0088 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.33 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.73 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 21974 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1191 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.33 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.39 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1399 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 85.69 REMARK 3 BIN R VALUE (WORKING SET) : 0.2310 REMARK 3 BIN FREE R VALUE SET COUNT : 86 REMARK 3 BIN FREE R VALUE : 0.2910 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4076 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 78 REMARK 3 SOLVENT ATOMS : 216 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.86 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.94000 REMARK 3 B22 (A**2) : 1.72000 REMARK 3 B33 (A**2) : -2.22000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.32000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.402 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.255 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.182 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.612 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.910 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4235 ; 0.018 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5775 ; 1.661 ; 1.990 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 554 ; 6.255 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 161 ;38.914 ;22.671 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 624 ;16.270 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 41 ;16.881 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 691 ; 0.107 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3330 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2783 ; 0.935 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4449 ; 1.701 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1452 ; 2.633 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1325 ; 4.216 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4G5F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-JUL-12. REMARK 100 THE DEPOSITION ID IS D_1000073760. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23179 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.330 REMARK 200 RESOLUTION RANGE LOW (A) : 47.730 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.11300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.33 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.46 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.47700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 3COV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 11-14% W/V PEG3000, 150 MM LITHIUM REMARK 280 SULFATE, 100 MM IMIDAZOLE, 2% V/V ETHANOL, 10% V/V GLYCEROL, 20 REMARK 280 MM MAGNESIUM CHLORIDE, PH 8, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 35.49500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3480 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2270 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24520 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 -13.59356 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 80.54091 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ILE A 3 REMARK 465 GLY A 74 REMARK 465 ALA A 75 REMARK 465 GLY A 76 REMARK 465 GLY A 77 REMARK 465 PHE A 290 REMARK 465 ALA A 291 REMARK 465 GLY A 292 REMARK 465 THR A 293 REMARK 465 ASP A 294 REMARK 465 ARG A 295 REMARK 465 PRO A 296 REMARK 465 ASP A 297 REMARK 465 GLY A 298 REMARK 465 TYR A 299 REMARK 465 ARG A 300 REMARK 465 ALA A 301 REMARK 465 ILE A 302 REMARK 465 LEU A 303 REMARK 465 GLU A 304 REMARK 465 SER A 305 REMARK 465 HIS A 306 REMARK 465 TRP A 307 REMARK 465 ARG A 308 REMARK 465 ASN A 309 REMARK 465 MET B 1 REMARK 465 MET B 71 REMARK 465 GLN B 72 REMARK 465 PHE B 73 REMARK 465 GLY B 74 REMARK 465 ALA B 75 REMARK 465 GLY B 76 REMARK 465 GLY B 77 REMARK 465 ASP B 78 REMARK 465 LEU B 79 REMARK 465 ASP B 80 REMARK 465 ALA B 81 REMARK 465 TYR B 82 REMARK 465 PRO B 83 REMARK 465 ARG B 84 REMARK 465 THR B 85 REMARK 465 THR B 289 REMARK 465 PHE B 290 REMARK 465 ALA B 291 REMARK 465 GLY B 292 REMARK 465 THR B 293 REMARK 465 ASP B 294 REMARK 465 ARG B 295 REMARK 465 PRO B 296 REMARK 465 ASP B 297 REMARK 465 GLY B 298 REMARK 465 TYR B 299 REMARK 465 ARG B 300 REMARK 465 ALA B 301 REMARK 465 ILE B 302 REMARK 465 LEU B 303 REMARK 465 GLU B 304 REMARK 465 SER B 305 REMARK 465 HIS B 306 REMARK 465 TRP B 307 REMARK 465 ARG B 308 REMARK 465 ASN B 309 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 25 CD NE CZ NH1 NH2 REMARK 470 ASP A 78 CG OD1 OD2 REMARK 470 ARG B 25 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP B 254 CB - CG - OD1 ANGL. DEV. = 6.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 103 77.34 -117.77 REMARK 500 ARG A 115 -90.41 -118.30 REMARK 500 LEU A 127 -112.76 49.63 REMARK 500 LEU A 257 -1.35 70.43 REMARK 500 PRO A 259 20.08 -55.13 REMARK 500 ASN A 263 -122.09 -90.62 REMARK 500 ILE B 3 133.31 -27.00 REMARK 500 ARG B 115 -94.15 -116.24 REMARK 500 LEU B 127 -112.33 54.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 0JD B 403 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 0JD A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 15N A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EOH A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EOH B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 15N B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EOH B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 0JD B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 405 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4DDH RELATED DB: PDB REMARK 900 RELATED ID: 4DDK RELATED DB: PDB REMARK 900 RELATED ID: 4DDM RELATED DB: PDB REMARK 900 RELATED ID: 4EF6 RELATED DB: PDB REMARK 900 RELATED ID: 4EFK RELATED DB: PDB REMARK 900 RELATED ID: 4FZJ RELATED DB: PDB DBREF 4G5F A 1 309 UNP P0A5R0 PANC_MYCTU 1 309 DBREF 4G5F B 1 309 UNP P0A5R0 PANC_MYCTU 1 309 SEQADV 4G5F ALA A 2 UNP P0A5R0 THR 2 ENGINEERED MUTATION SEQADV 4G5F GLY A 77 UNP P0A5R0 GLU 77 ENGINEERED MUTATION SEQADV 4G5F ALA B 2 UNP P0A5R0 THR 2 ENGINEERED MUTATION SEQADV 4G5F GLY B 77 UNP P0A5R0 GLU 77 ENGINEERED MUTATION SEQRES 1 A 309 MET ALA ILE PRO ALA PHE HIS PRO GLY GLU LEU ASN VAL SEQRES 2 A 309 TYR SER ALA PRO GLY ASP VAL ALA ASP VAL SER ARG ALA SEQRES 3 A 309 LEU ARG LEU THR GLY ARG ARG VAL MET LEU VAL PRO THR SEQRES 4 A 309 MET GLY ALA LEU HIS GLU GLY HIS LEU ALA LEU VAL ARG SEQRES 5 A 309 ALA ALA LYS ARG VAL PRO GLY SER VAL VAL VAL VAL SER SEQRES 6 A 309 ILE PHE VAL ASN PRO MET GLN PHE GLY ALA GLY GLY ASP SEQRES 7 A 309 LEU ASP ALA TYR PRO ARG THR PRO ASP ASP ASP LEU ALA SEQRES 8 A 309 GLN LEU ARG ALA GLU GLY VAL GLU ILE ALA PHE THR PRO SEQRES 9 A 309 THR THR ALA ALA MET TYR PRO ASP GLY LEU ARG THR THR SEQRES 10 A 309 VAL GLN PRO GLY PRO LEU ALA ALA GLU LEU GLU GLY GLY SEQRES 11 A 309 PRO ARG PRO THR HIS PHE ALA GLY VAL LEU THR VAL VAL SEQRES 12 A 309 LEU LYS LEU LEU GLN ILE VAL ARG PRO ASP ARG VAL PHE SEQRES 13 A 309 PHE GLY GLU LYS ASP TYR GLN GLN LEU VAL LEU ILE ARG SEQRES 14 A 309 GLN LEU VAL ALA ASP PHE ASN LEU ASP VAL ALA VAL VAL SEQRES 15 A 309 GLY VAL PRO THR VAL ARG GLU ALA ASP GLY LEU ALA MET SEQRES 16 A 309 SER SER ARG ASN ARG TYR LEU ASP PRO ALA GLN ARG ALA SEQRES 17 A 309 ALA ALA VAL ALA LEU SER ALA ALA LEU THR ALA ALA ALA SEQRES 18 A 309 HIS ALA ALA THR ALA GLY ALA GLN ALA ALA LEU ASP ALA SEQRES 19 A 309 ALA ARG ALA VAL LEU ASP ALA ALA PRO GLY VAL ALA VAL SEQRES 20 A 309 ASP TYR LEU GLU LEU ARG ASP ILE GLY LEU GLY PRO MET SEQRES 21 A 309 PRO LEU ASN GLY SER GLY ARG LEU LEU VAL ALA ALA ARG SEQRES 22 A 309 LEU GLY THR THR ARG LEU LEU ASP ASN ILE ALA ILE GLU SEQRES 23 A 309 ILE GLY THR PHE ALA GLY THR ASP ARG PRO ASP GLY TYR SEQRES 24 A 309 ARG ALA ILE LEU GLU SER HIS TRP ARG ASN SEQRES 1 B 309 MET ALA ILE PRO ALA PHE HIS PRO GLY GLU LEU ASN VAL SEQRES 2 B 309 TYR SER ALA PRO GLY ASP VAL ALA ASP VAL SER ARG ALA SEQRES 3 B 309 LEU ARG LEU THR GLY ARG ARG VAL MET LEU VAL PRO THR SEQRES 4 B 309 MET GLY ALA LEU HIS GLU GLY HIS LEU ALA LEU VAL ARG SEQRES 5 B 309 ALA ALA LYS ARG VAL PRO GLY SER VAL VAL VAL VAL SER SEQRES 6 B 309 ILE PHE VAL ASN PRO MET GLN PHE GLY ALA GLY GLY ASP SEQRES 7 B 309 LEU ASP ALA TYR PRO ARG THR PRO ASP ASP ASP LEU ALA SEQRES 8 B 309 GLN LEU ARG ALA GLU GLY VAL GLU ILE ALA PHE THR PRO SEQRES 9 B 309 THR THR ALA ALA MET TYR PRO ASP GLY LEU ARG THR THR SEQRES 10 B 309 VAL GLN PRO GLY PRO LEU ALA ALA GLU LEU GLU GLY GLY SEQRES 11 B 309 PRO ARG PRO THR HIS PHE ALA GLY VAL LEU THR VAL VAL SEQRES 12 B 309 LEU LYS LEU LEU GLN ILE VAL ARG PRO ASP ARG VAL PHE SEQRES 13 B 309 PHE GLY GLU LYS ASP TYR GLN GLN LEU VAL LEU ILE ARG SEQRES 14 B 309 GLN LEU VAL ALA ASP PHE ASN LEU ASP VAL ALA VAL VAL SEQRES 15 B 309 GLY VAL PRO THR VAL ARG GLU ALA ASP GLY LEU ALA MET SEQRES 16 B 309 SER SER ARG ASN ARG TYR LEU ASP PRO ALA GLN ARG ALA SEQRES 17 B 309 ALA ALA VAL ALA LEU SER ALA ALA LEU THR ALA ALA ALA SEQRES 18 B 309 HIS ALA ALA THR ALA GLY ALA GLN ALA ALA LEU ASP ALA SEQRES 19 B 309 ALA ARG ALA VAL LEU ASP ALA ALA PRO GLY VAL ALA VAL SEQRES 20 B 309 ASP TYR LEU GLU LEU ARG ASP ILE GLY LEU GLY PRO MET SEQRES 21 B 309 PRO LEU ASN GLY SER GLY ARG LEU LEU VAL ALA ALA ARG SEQRES 22 B 309 LEU GLY THR THR ARG LEU LEU ASP ASN ILE ALA ILE GLU SEQRES 23 B 309 ILE GLY THR PHE ALA GLY THR ASP ARG PRO ASP GLY TYR SEQRES 24 B 309 ARG ALA ILE LEU GLU SER HIS TRP ARG ASN HET GOL A 401 6 HET 0JD A 402 13 HET 15N A 403 13 HET EDO A 404 4 HET EDO A 405 4 HET EOH A 406 3 HET EOH B 401 3 HET 15N B 402 13 HET EOH B 404 3 HET 0JD B 403 12 HET EDO B 405 4 HETNAM GOL GLYCEROL HETNAM 0JD (2S)-2,3-DIHYDRO-1,4-BENZODIOXINE-2-CARBOXYLIC ACID HETNAM 15N (2R)-2,3-DIHYDRO-1,4-BENZODIOXINE-2-CARBOXYLIC ACID HETNAM EDO 1,2-ETHANEDIOL HETNAM EOH ETHANOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 GOL C3 H8 O3 FORMUL 4 0JD 2(C9 H8 O4) FORMUL 5 15N 2(C9 H8 O4) FORMUL 6 EDO 3(C2 H6 O2) FORMUL 8 EOH 3(C2 H6 O) FORMUL 14 HOH *216(H2 O) HELIX 1 1 ALA A 16 THR A 30 1 15 HELIX 2 2 HIS A 44 ARG A 56 1 13 HELIX 3 3 THR A 85 GLY A 97 1 13 HELIX 4 4 THR A 105 TYR A 110 1 6 HELIX 5 5 GLY A 121 GLY A 130 5 10 HELIX 6 6 THR A 134 ARG A 151 1 18 HELIX 7 7 ASP A 161 PHE A 175 1 15 HELIX 8 8 SER A 196 LEU A 202 5 7 HELIX 9 9 ASP A 203 ALA A 210 1 8 HELIX 10 10 VAL A 211 ALA A 224 1 14 HELIX 11 11 GLY A 227 ALA A 241 1 15 HELIX 12 12 ALA B 16 THR B 30 1 15 HELIX 13 13 HIS B 44 ARG B 56 1 13 HELIX 14 14 ASP B 87 GLY B 97 1 11 HELIX 15 15 THR B 105 TYR B 110 1 6 HELIX 16 16 GLY B 121 GLY B 130 5 10 HELIX 17 17 THR B 134 ARG B 151 1 18 HELIX 18 18 ASP B 161 PHE B 175 1 15 HELIX 19 19 SER B 196 LEU B 202 5 7 HELIX 20 20 ASP B 203 VAL B 211 1 9 HELIX 21 21 VAL B 211 ALA B 224 1 14 HELIX 22 22 GLY B 227 ASP B 240 1 14 SHEET 1 A 6 ASN A 12 TYR A 14 0 SHEET 2 A 6 ILE A 100 PHE A 102 1 O ALA A 101 N TYR A 14 SHEET 3 A 6 SER A 60 ILE A 66 1 N VAL A 64 O ILE A 100 SHEET 4 A 6 ARG A 33 THR A 39 1 N MET A 35 O VAL A 63 SHEET 5 A 6 ARG A 154 GLY A 158 1 O ARG A 154 N LEU A 36 SHEET 6 A 6 ALA A 180 VAL A 184 1 O VAL A 182 N VAL A 155 SHEET 1 B 2 THR A 117 GLN A 119 0 SHEET 2 B 2 THR B 117 GLN B 119 -1 O THR B 117 N GLN A 119 SHEET 1 C 3 ALA A 246 ASP A 254 0 SHEET 2 C 3 SER A 265 LEU A 274 -1 O ARG A 267 N ARG A 253 SHEET 3 C 3 THR A 277 GLU A 286 -1 O LEU A 279 N ALA A 272 SHEET 1 D 6 ASN B 12 TYR B 14 0 SHEET 2 D 6 ILE B 100 PHE B 102 1 O ALA B 101 N ASN B 12 SHEET 3 D 6 SER B 60 ILE B 66 1 N ILE B 66 O PHE B 102 SHEET 4 D 6 ARG B 33 THR B 39 1 N VAL B 37 O VAL B 63 SHEET 5 D 6 ARG B 154 GLY B 158 1 O ARG B 154 N LEU B 36 SHEET 6 D 6 ALA B 180 VAL B 184 1 O VAL B 182 N VAL B 155 SHEET 1 E 3 ALA B 246 ARG B 253 0 SHEET 2 E 3 GLY B 264 LEU B 274 -1 O LEU B 269 N GLU B 251 SHEET 3 E 3 THR B 277 ILE B 287 -1 O THR B 277 N LEU B 274 SITE 1 AC1 10 MET A 109 TYR A 110 PRO A 111 ASP A 112 SITE 2 AC1 10 GLY A 113 LEU A 114 ARG A 115 THR A 116 SITE 3 AC1 10 LYS A 145 ASP B 174 SITE 1 AC2 7 PRO A 38 THR A 39 MET A 40 HIS A 47 SITE 2 AC2 7 VAL A 143 GLN A 164 HOH A 558 SITE 1 AC3 7 PRO A 38 THR A 39 MET A 40 HIS A 47 SITE 2 AC3 7 VAL A 143 GLN A 164 HOH A 558 SITE 1 AC4 2 PRO A 111 ASP A 112 SITE 1 AC5 6 LEU A 114 ARG A 115 THR A 117 GLN B 119 SITE 2 AC5 6 PRO B 120 GLY B 121 SITE 1 AC6 2 MET A 71 TYR A 110 SITE 1 AC7 5 SER B 24 ARG B 25 ARG B 28 VAL B 150 SITE 2 AC7 5 ARG B 151 SITE 1 AC8 7 PRO B 38 THR B 39 MET B 40 HIS B 47 SITE 2 AC8 7 VAL B 143 PHE B 157 GLN B 164 SITE 1 AC9 1 PRO A 133 SITE 1 BC1 6 PRO B 38 THR B 39 MET B 40 HIS B 47 SITE 2 BC1 6 VAL B 143 GLN B 164 SITE 1 BC2 3 TYR B 110 LEU B 114 GLY B 138 CRYST1 48.410 70.990 81.680 90.00 99.58 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020657 0.000000 0.003486 0.00000 SCALE2 0.000000 0.014086 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012416 0.00000