HEADER HYDROLASE 23-JUL-12 4G8D TITLE CRYSTAL STRUCTURES OF N-ACYL HOMOSERINE LACTONASE AIDH S102G MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA/BETA HYDROLASE FOLD PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: AHL-LACTONASE; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: OCHROBACTRUM; SOURCE 3 ORGANISM_TAXID: 680275; SOURCE 4 STRAIN: T63; SOURCE 5 GENE: AIDH; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ALPHA/BETA-HYDROLASE FOLD, AHL-LACTONASE, AHL-BINDING, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR D.C.LIANG,X.X.YAN,A.GAO REVDAT 2 08-NOV-23 4G8D 1 SEQADV REVDAT 1 16-JAN-13 4G8D 0 JRNL AUTH A.GAO,G.Y.MEI,S.LIU,P.WANG,Q.TANG,Y.P.LIU,H.WEN,X.M.AN, JRNL AUTH 2 L.Q.ZHANG,X.X.YAN,D.C.LIANG JRNL TITL HIGH-RESOLUTION STRUCTURES OF AIDH COMPLEXES PROVIDE JRNL TITL 2 INSIGHTS INTO A NOVEL CATALYTIC MECHANISM FOR N-ACYL JRNL TITL 3 HOMOSERINE LACTONASE JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 69 82 2013 JRNL REFN ISSN 0907-4449 JRNL PMID 23275166 JRNL DOI 10.1107/S0907444912042369 REMARK 2 REMARK 2 RESOLUTION. 1.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.6.4_486) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.83 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 97703 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.135 REMARK 3 R VALUE (WORKING SET) : 0.133 REMARK 3 FREE R VALUE : 0.168 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 4879 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.8272 - 2.9058 0.99 9335 481 0.1276 0.1604 REMARK 3 2 2.9058 - 2.3075 1.00 9353 459 0.1411 0.1834 REMARK 3 3 2.3075 - 2.0161 1.00 9291 452 0.1300 0.1614 REMARK 3 4 2.0161 - 1.8320 1.00 9319 476 0.1305 0.1707 REMARK 3 5 1.8320 - 1.7007 1.00 9246 509 0.1255 0.1589 REMARK 3 6 1.7007 - 1.6005 1.00 9300 518 0.1240 0.1675 REMARK 3 7 1.6005 - 1.5204 1.00 9228 486 0.1263 0.1537 REMARK 3 8 1.5204 - 1.4542 1.00 9259 510 0.1354 0.1575 REMARK 3 9 1.4542 - 1.3982 1.00 9262 474 0.1476 0.1698 REMARK 3 10 1.3982 - 1.3500 0.99 9231 514 0.1747 0.2197 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.00 REMARK 3 SHRINKAGE RADIUS : 0.72 REMARK 3 K_SOL : 0.39 REMARK 3 B_SOL : 96.00 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 14.960 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 9.23 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.81 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.33390 REMARK 3 B22 (A**2) : -1.77260 REMARK 3 B33 (A**2) : 0.43860 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.92700 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 4420 REMARK 3 ANGLE : 1.035 5991 REMARK 3 CHIRALITY : 0.069 626 REMARK 3 PLANARITY : 0.005 812 REMARK 3 DIHEDRAL : 12.296 1633 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 20 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 3:19) REMARK 3 ORIGIN FOR THE GROUP (A): 16.9573 67.5566 22.2895 REMARK 3 T TENSOR REMARK 3 T11: 0.0730 T22: 0.1230 REMARK 3 T33: 0.1177 T12: 0.0073 REMARK 3 T13: 0.0151 T23: -0.0216 REMARK 3 L TENSOR REMARK 3 L11: 0.2599 L22: 1.0831 REMARK 3 L33: 1.0443 L12: 0.4444 REMARK 3 L13: -0.1415 L23: -0.4607 REMARK 3 S TENSOR REMARK 3 S11: -0.0221 S12: -0.0893 S13: 0.1186 REMARK 3 S21: 0.1118 S22: 0.0856 S23: 0.1854 REMARK 3 S31: 0.0203 S32: -0.2822 S33: 0.0045 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 20:81) REMARK 3 ORIGIN FOR THE GROUP (A): 24.5308 70.3609 18.3609 REMARK 3 T TENSOR REMARK 3 T11: 0.0531 T22: 0.0564 REMARK 3 T33: 0.0751 T12: 0.0164 REMARK 3 T13: -0.0108 T23: -0.0113 REMARK 3 L TENSOR REMARK 3 L11: 0.2855 L22: 0.7698 REMARK 3 L33: 0.8197 L12: 0.4562 REMARK 3 L13: 0.1742 L23: 0.1074 REMARK 3 S TENSOR REMARK 3 S11: -0.0579 S12: -0.0507 S13: 0.0725 REMARK 3 S21: 0.0721 S22: -0.0172 S23: 0.1400 REMARK 3 S31: -0.0796 S32: -0.0680 S33: 0.0739 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 82:89) REMARK 3 ORIGIN FOR THE GROUP (A): 20.1775 61.9442 12.7656 REMARK 3 T TENSOR REMARK 3 T11: 0.0571 T22: 0.0891 REMARK 3 T33: 0.0937 T12: 0.0001 REMARK 3 T13: -0.0125 T23: -0.0210 REMARK 3 L TENSOR REMARK 3 L11: 0.6950 L22: 1.6363 REMARK 3 L33: 1.4767 L12: 0.9907 REMARK 3 L13: -0.2333 L23: 0.0803 REMARK 3 S TENSOR REMARK 3 S11: -0.0634 S12: 0.0445 S13: 0.1091 REMARK 3 S21: 0.0011 S22: -0.0334 S23: 0.2114 REMARK 3 S31: 0.1154 S32: -0.2076 S33: 0.0983 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 90:142) REMARK 3 ORIGIN FOR THE GROUP (A): 32.2859 67.7031 9.0476 REMARK 3 T TENSOR REMARK 3 T11: 0.0475 T22: 0.0205 REMARK 3 T33: 0.0410 T12: -0.0051 REMARK 3 T13: -0.0151 T23: 0.0014 REMARK 3 L TENSOR REMARK 3 L11: 0.3299 L22: 0.9751 REMARK 3 L33: 0.5506 L12: 0.2499 REMARK 3 L13: -0.1090 L23: 0.2415 REMARK 3 S TENSOR REMARK 3 S11: -0.0701 S12: 0.0037 S13: -0.0361 REMARK 3 S21: -0.0973 S22: 0.0368 S23: -0.0161 REMARK 3 S31: -0.0316 S32: 0.0321 S33: 0.0288 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 143:158) REMARK 3 ORIGIN FOR THE GROUP (A): 41.7999 66.7378 30.4037 REMARK 3 T TENSOR REMARK 3 T11: 0.1409 T22: 0.0984 REMARK 3 T33: 0.0962 T12: -0.0106 REMARK 3 T13: -0.0515 T23: 0.0066 REMARK 3 L TENSOR REMARK 3 L11: 1.4116 L22: 1.1790 REMARK 3 L33: 0.7975 L12: 0.2040 REMARK 3 L13: 0.9606 L23: -0.0197 REMARK 3 S TENSOR REMARK 3 S11: -0.0501 S12: -0.0668 S13: 0.0983 REMARK 3 S21: 0.2691 S22: 0.0312 S23: -0.1325 REMARK 3 S31: -0.1308 S32: 0.1507 S33: 0.0767 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 159:185) REMARK 3 ORIGIN FOR THE GROUP (A): 35.2837 72.2544 28.6513 REMARK 3 T TENSOR REMARK 3 T11: 0.1248 T22: 0.0841 REMARK 3 T33: 0.0796 T12: -0.0073 REMARK 3 T13: -0.0240 T23: -0.0052 REMARK 3 L TENSOR REMARK 3 L11: 0.2507 L22: 0.9318 REMARK 3 L33: 0.1390 L12: 0.1078 REMARK 3 L13: 0.0359 L23: 0.2217 REMARK 3 S TENSOR REMARK 3 S11: 0.0228 S12: -0.0570 S13: 0.0444 REMARK 3 S21: 0.2266 S22: -0.0622 S23: -0.0327 REMARK 3 S31: 0.0007 S32: -0.0049 S33: 0.0319 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 186:198) REMARK 3 ORIGIN FOR THE GROUP (A): 38.8468 56.5153 16.5440 REMARK 3 T TENSOR REMARK 3 T11: 0.0669 T22: 0.1331 REMARK 3 T33: 0.1019 T12: 0.0091 REMARK 3 T13: -0.0176 T23: -0.0045 REMARK 3 L TENSOR REMARK 3 L11: 1.6010 L22: 1.2060 REMARK 3 L33: 5.1036 L12: 0.6132 REMARK 3 L13: 2.8523 L23: 1.1622 REMARK 3 S TENSOR REMARK 3 S11: 0.0065 S12: 0.2707 S13: 0.0116 REMARK 3 S21: 0.1099 S22: 0.1988 S23: -0.3123 REMARK 3 S31: -0.0275 S32: 0.7519 S33: -0.1585 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN A AND RESID 199:218) REMARK 3 ORIGIN FOR THE GROUP (A): 37.0604 70.4127 3.3441 REMARK 3 T TENSOR REMARK 3 T11: 0.1152 T22: 0.0648 REMARK 3 T33: 0.0659 T12: -0.0256 REMARK 3 T13: 0.0027 T23: 0.0066 REMARK 3 L TENSOR REMARK 3 L11: 0.4321 L22: 0.7991 REMARK 3 L33: 0.3691 L12: 0.1385 REMARK 3 L13: 0.0937 L23: 0.4555 REMARK 3 S TENSOR REMARK 3 S11: -0.0524 S12: 0.0744 S13: -0.0051 REMARK 3 S21: -0.2417 S22: -0.0102 S23: -0.0500 REMARK 3 S31: -0.1526 S32: 0.0623 S33: 0.0493 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN A AND RESID 219:256) REMARK 3 ORIGIN FOR THE GROUP (A): 39.9859 78.4197 8.7829 REMARK 3 T TENSOR REMARK 3 T11: 0.1317 T22: 0.0536 REMARK 3 T33: 0.0802 T12: -0.0420 REMARK 3 T13: -0.0061 T23: 0.0058 REMARK 3 L TENSOR REMARK 3 L11: 0.3796 L22: 0.5835 REMARK 3 L33: 0.8951 L12: 0.1600 REMARK 3 L13: 0.0966 L23: 0.4680 REMARK 3 S TENSOR REMARK 3 S11: -0.0885 S12: 0.0139 S13: 0.0607 REMARK 3 S21: -0.1828 S22: 0.1001 S23: -0.1161 REMARK 3 S31: -0.2913 S32: 0.1223 S33: 0.0005 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN A AND RESID 257:271) REMARK 3 ORIGIN FOR THE GROUP (A): 26.9631 83.2748 4.5084 REMARK 3 T TENSOR REMARK 3 T11: 0.2404 T22: 0.0500 REMARK 3 T33: 0.1375 T12: -0.0051 REMARK 3 T13: -0.1285 T23: 0.0199 REMARK 3 L TENSOR REMARK 3 L11: 0.5838 L22: 0.9070 REMARK 3 L33: 0.8574 L12: 0.6207 REMARK 3 L13: 0.5747 L23: 0.3422 REMARK 3 S TENSOR REMARK 3 S11: -0.2750 S12: -0.0312 S13: 0.2612 REMARK 3 S21: -0.5172 S22: 0.0407 S23: 0.3953 REMARK 3 S31: -0.3343 S32: -0.1045 S33: 0.2405 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: (CHAIN B AND RESID 3:15) REMARK 3 ORIGIN FOR THE GROUP (A): 12.4251 43.7322 13.5814 REMARK 3 T TENSOR REMARK 3 T11: 0.0912 T22: 0.1073 REMARK 3 T33: 0.0969 T12: 0.0314 REMARK 3 T13: -0.0017 T23: -0.0000 REMARK 3 L TENSOR REMARK 3 L11: 2.1900 L22: 4.6685 REMARK 3 L33: 1.0044 L12: -3.0713 REMARK 3 L13: 1.0341 L23: -1.1982 REMARK 3 S TENSOR REMARK 3 S11: -0.1716 S12: -0.3051 S13: -0.1404 REMARK 3 S21: 0.3163 S22: 0.2434 S23: 0.5105 REMARK 3 S31: -0.1348 S32: -0.2364 S33: -0.0486 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: (CHAIN B AND RESID 16:26) REMARK 3 ORIGIN FOR THE GROUP (A): 18.2018 32.0147 17.5798 REMARK 3 T TENSOR REMARK 3 T11: 0.0783 T22: 0.0923 REMARK 3 T33: 0.1133 T12: 0.0160 REMARK 3 T13: 0.0154 T23: 0.0249 REMARK 3 L TENSOR REMARK 3 L11: 1.0469 L22: 3.4944 REMARK 3 L33: 2.7299 L12: -1.8781 REMARK 3 L13: 1.6905 L23: -3.0326 REMARK 3 S TENSOR REMARK 3 S11: -0.0649 S12: -0.2702 S13: -0.2270 REMARK 3 S21: 0.1980 S22: 0.2793 S23: 0.3174 REMARK 3 S31: -0.0821 S32: -0.3506 S33: -0.2075 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: (CHAIN B AND RESID 27:64) REMARK 3 ORIGIN FOR THE GROUP (A): 19.5580 33.3263 9.2127 REMARK 3 T TENSOR REMARK 3 T11: 0.0469 T22: 0.0538 REMARK 3 T33: 0.0844 T12: 0.0013 REMARK 3 T13: -0.0081 T23: 0.0069 REMARK 3 L TENSOR REMARK 3 L11: 0.3257 L22: 0.5619 REMARK 3 L33: 0.5046 L12: -0.2941 REMARK 3 L13: 0.2904 L23: -0.2191 REMARK 3 S TENSOR REMARK 3 S11: 0.0110 S12: 0.0063 S13: -0.0417 REMARK 3 S21: -0.0184 S22: 0.0361 S23: 0.1257 REMARK 3 S31: 0.0453 S32: -0.0290 S33: -0.0498 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: (CHAIN B AND RESID 65:108) REMARK 3 ORIGIN FOR THE GROUP (A): 22.8721 45.9470 9.8461 REMARK 3 T TENSOR REMARK 3 T11: 0.0444 T22: 0.0499 REMARK 3 T33: 0.0696 T12: 0.0018 REMARK 3 T13: -0.0052 T23: -0.0009 REMARK 3 L TENSOR REMARK 3 L11: 0.4997 L22: 0.4856 REMARK 3 L33: 0.4806 L12: 0.0383 REMARK 3 L13: 0.1814 L23: 0.1487 REMARK 3 S TENSOR REMARK 3 S11: -0.0278 S12: -0.0071 S13: 0.0764 REMARK 3 S21: 0.0106 S22: 0.0086 S23: 0.0415 REMARK 3 S31: -0.0400 S32: -0.0182 S33: 0.0205 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: (CHAIN B AND RESID 109:143) REMARK 3 ORIGIN FOR THE GROUP (A): 33.9060 42.3229 2.8722 REMARK 3 T TENSOR REMARK 3 T11: 0.0483 T22: 0.0556 REMARK 3 T33: 0.0833 T12: 0.0053 REMARK 3 T13: -0.0024 T23: 0.0017 REMARK 3 L TENSOR REMARK 3 L11: 0.5391 L22: 0.5674 REMARK 3 L33: 0.6534 L12: 0.0762 REMARK 3 L13: -0.4682 L23: 0.0815 REMARK 3 S TENSOR REMARK 3 S11: 0.0297 S12: 0.0504 S13: 0.0538 REMARK 3 S21: -0.0176 S22: 0.0021 S23: -0.0391 REMARK 3 S31: -0.0592 S32: -0.0220 S33: -0.0329 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: (CHAIN B AND RESID 144:170) REMARK 3 ORIGIN FOR THE GROUP (A): 18.5160 37.5976 -9.9321 REMARK 3 T TENSOR REMARK 3 T11: 0.1417 T22: 0.0808 REMARK 3 T33: 0.1051 T12: -0.0171 REMARK 3 T13: -0.0464 T23: 0.0041 REMARK 3 L TENSOR REMARK 3 L11: 0.5732 L22: 0.3227 REMARK 3 L33: 0.8252 L12: -0.4133 REMARK 3 L13: 0.3753 L23: -0.3906 REMARK 3 S TENSOR REMARK 3 S11: 0.0343 S12: 0.0424 S13: -0.0808 REMARK 3 S21: -0.1909 S22: 0.0370 S23: 0.1869 REMARK 3 S31: 0.1040 S32: -0.0350 S33: -0.1193 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: (CHAIN B AND RESID 171:193) REMARK 3 ORIGIN FOR THE GROUP (A): 19.3255 46.1803 -3.7694 REMARK 3 T TENSOR REMARK 3 T11: 0.0719 T22: 0.0799 REMARK 3 T33: 0.1022 T12: -0.0092 REMARK 3 T13: -0.0312 T23: 0.0124 REMARK 3 L TENSOR REMARK 3 L11: 1.8356 L22: 1.3685 REMARK 3 L33: 1.2451 L12: 1.4294 REMARK 3 L13: 0.9182 L23: 0.7903 REMARK 3 S TENSOR REMARK 3 S11: -0.0349 S12: 0.2161 S13: -0.0648 REMARK 3 S21: -0.1197 S22: 0.0922 S23: 0.0156 REMARK 3 S31: -0.0271 S32: 0.1072 S33: -0.0517 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: (CHAIN B AND RESID 194:209) REMARK 3 ORIGIN FOR THE GROUP (A): 39.4014 47.5742 6.7290 REMARK 3 T TENSOR REMARK 3 T11: 0.0427 T22: 0.0754 REMARK 3 T33: 0.0994 T12: -0.0018 REMARK 3 T13: 0.0008 T23: -0.0018 REMARK 3 L TENSOR REMARK 3 L11: 0.1390 L22: 0.7993 REMARK 3 L33: 0.1660 L12: 0.2280 REMARK 3 L13: -0.1258 L23: -0.2399 REMARK 3 S TENSOR REMARK 3 S11: -0.0162 S12: 0.0312 S13: 0.0207 REMARK 3 S21: -0.0184 S22: -0.0549 S23: -0.1828 REMARK 3 S31: -0.0102 S32: 0.0369 S33: 0.0684 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: (CHAIN B AND RESID 210:267) REMARK 3 ORIGIN FOR THE GROUP (A): 35.0152 29.5909 2.4330 REMARK 3 T TENSOR REMARK 3 T11: 0.0521 T22: 0.0545 REMARK 3 T33: 0.0848 T12: 0.0133 REMARK 3 T13: -0.0034 T23: -0.0211 REMARK 3 L TENSOR REMARK 3 L11: 0.6563 L22: 0.5166 REMARK 3 L33: 0.3716 L12: -0.0205 REMARK 3 L13: 0.3385 L23: -0.1000 REMARK 3 S TENSOR REMARK 3 S11: 0.0580 S12: 0.0705 S13: -0.1310 REMARK 3 S21: -0.0423 S22: 0.0027 S23: -0.1103 REMARK 3 S31: 0.0760 S32: 0.0522 S33: -0.0609 REMARK 3 TLS GROUP : 20 REMARK 3 SELECTION: (CHAIN B AND RESID 268:273) REMARK 3 ORIGIN FOR THE GROUP (A): 37.2533 28.0863 21.2793 REMARK 3 T TENSOR REMARK 3 T11: 0.2042 T22: 0.0881 REMARK 3 T33: 0.1348 T12: 0.0193 REMARK 3 T13: -0.0644 T23: -0.0015 REMARK 3 L TENSOR REMARK 3 L11: 0.6981 L22: 0.1390 REMARK 3 L33: 1.3300 L12: 0.2647 REMARK 3 L13: 0.9443 L23: 0.4030 REMARK 3 S TENSOR REMARK 3 S11: 0.0341 S12: -0.1327 S13: -0.1128 REMARK 3 S21: 0.4993 S22: 0.0746 S23: -0.4209 REMARK 3 S31: 0.4053 S32: 0.2962 S33: -0.1388 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4G8D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-AUG-12. REMARK 100 THE DEPOSITION ID IS D_1000073866. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JUL-11 REMARK 200 TEMPERATURE (KELVIN) : 180 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL44XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 99376 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.350 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 50.4 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.40 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 4G5X REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 34.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG8000, 0.2M LIAC, 0.1M NAAC, PH REMARK 280 5.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 64.97050 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 HIS A 279 REMARK 465 MET B 1 REMARK 465 HIS B 275 REMARK 465 HIS B 276 REMARK 465 HIS B 277 REMARK 465 HIS B 278 REMARK 465 HIS B 279 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ARG A 267 N CA C O CB CG CD REMARK 480 ARG A 267 NE CZ NH1 NH2 REMARK 480 LEU A 272 C REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 35 -156.30 -107.22 REMARK 500 ASP A 218 35.26 -99.97 REMARK 500 SER B 35 -155.91 -106.25 REMARK 500 ASN B 234 76.57 -155.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4G5X RELATED DB: PDB REMARK 900 RELATED ID: 4G8B RELATED DB: PDB REMARK 900 RELATED ID: 4G8C RELATED DB: PDB REMARK 900 RELATED ID: 4G9E RELATED DB: PDB REMARK 900 RELATED ID: 4G9G RELATED DB: PDB DBREF 4G8D A 1 271 UNP D2J2T6 D2J2T6_9RHIZ 1 271 DBREF 4G8D B 1 271 UNP D2J2T6 D2J2T6_9RHIZ 1 271 SEQADV 4G8D GLY A 102 UNP D2J2T6 SER 102 ENGINEERED MUTATION SEQADV 4G8D LEU A 272 UNP D2J2T6 EXPRESSION TAG SEQADV 4G8D GLU A 273 UNP D2J2T6 EXPRESSION TAG SEQADV 4G8D HIS A 274 UNP D2J2T6 EXPRESSION TAG SEQADV 4G8D HIS A 275 UNP D2J2T6 EXPRESSION TAG SEQADV 4G8D HIS A 276 UNP D2J2T6 EXPRESSION TAG SEQADV 4G8D HIS A 277 UNP D2J2T6 EXPRESSION TAG SEQADV 4G8D HIS A 278 UNP D2J2T6 EXPRESSION TAG SEQADV 4G8D HIS A 279 UNP D2J2T6 EXPRESSION TAG SEQADV 4G8D GLY B 102 UNP D2J2T6 SER 102 ENGINEERED MUTATION SEQADV 4G8D LEU B 272 UNP D2J2T6 EXPRESSION TAG SEQADV 4G8D GLU B 273 UNP D2J2T6 EXPRESSION TAG SEQADV 4G8D HIS B 274 UNP D2J2T6 EXPRESSION TAG SEQADV 4G8D HIS B 275 UNP D2J2T6 EXPRESSION TAG SEQADV 4G8D HIS B 276 UNP D2J2T6 EXPRESSION TAG SEQADV 4G8D HIS B 277 UNP D2J2T6 EXPRESSION TAG SEQADV 4G8D HIS B 278 UNP D2J2T6 EXPRESSION TAG SEQADV 4G8D HIS B 279 UNP D2J2T6 EXPRESSION TAG SEQRES 1 A 279 MET THR ILE ASN TYR HIS GLU LEU GLU THR SER HIS GLY SEQRES 2 A 279 ARG ILE ALA VAL ARG GLU SER GLU GLY GLU GLY ALA PRO SEQRES 3 A 279 LEU LEU MET ILE HIS GLY ASN SER SER SER GLY ALA ILE SEQRES 4 A 279 PHE ALA PRO GLN LEU GLU GLY GLU ILE GLY LYS LYS TRP SEQRES 5 A 279 ARG VAL ILE ALA PRO ASP LEU PRO GLY HIS GLY LYS SER SEQRES 6 A 279 THR ASP ALA ILE ASP PRO ASP ARG SER TYR SER MET GLU SEQRES 7 A 279 GLY TYR ALA ASP ALA MET THR GLU VAL MET GLN GLN LEU SEQRES 8 A 279 GLY ILE ALA ASP ALA VAL VAL PHE GLY TRP GLY LEU GLY SEQRES 9 A 279 GLY HIS ILE GLY ILE GLU MET ILE ALA ARG TYR PRO GLU SEQRES 10 A 279 MET ARG GLY LEU MET ILE THR GLY THR PRO PRO VAL ALA SEQRES 11 A 279 ARG GLU GLU VAL GLY GLN GLY PHE LYS SER GLY PRO ASP SEQRES 12 A 279 MET ALA LEU ALA GLY GLN GLU ILE PHE SER GLU ARG ASP SEQRES 13 A 279 VAL GLU SER TYR ALA ARG SER THR CYS GLY GLU PRO PHE SEQRES 14 A 279 GLU ALA SER LEU LEU ASP ILE VAL ALA ARG THR ASP GLY SEQRES 15 A 279 ARG ALA ARG ARG ILE MET PHE GLU LYS PHE GLY SER GLY SEQRES 16 A 279 THR GLY GLY ASN GLN ARG ASP ILE VAL ALA GLU ALA GLN SEQRES 17 A 279 LEU PRO ILE ALA VAL VAL ASN GLY ARG ASP GLU PRO PHE SEQRES 18 A 279 VAL GLU LEU ASP PHE VAL SER LYS VAL LYS PHE GLY ASN SEQRES 19 A 279 LEU TRP GLU GLY LYS THR HIS VAL ILE ASP ASN ALA GLY SEQRES 20 A 279 HIS ALA PRO PHE ARG GLU ALA PRO ALA GLU PHE ASP ALA SEQRES 21 A 279 TYR LEU ALA ARG PHE ILE ARG ASP CYS THR GLN LEU GLU SEQRES 22 A 279 HIS HIS HIS HIS HIS HIS SEQRES 1 B 279 MET THR ILE ASN TYR HIS GLU LEU GLU THR SER HIS GLY SEQRES 2 B 279 ARG ILE ALA VAL ARG GLU SER GLU GLY GLU GLY ALA PRO SEQRES 3 B 279 LEU LEU MET ILE HIS GLY ASN SER SER SER GLY ALA ILE SEQRES 4 B 279 PHE ALA PRO GLN LEU GLU GLY GLU ILE GLY LYS LYS TRP SEQRES 5 B 279 ARG VAL ILE ALA PRO ASP LEU PRO GLY HIS GLY LYS SER SEQRES 6 B 279 THR ASP ALA ILE ASP PRO ASP ARG SER TYR SER MET GLU SEQRES 7 B 279 GLY TYR ALA ASP ALA MET THR GLU VAL MET GLN GLN LEU SEQRES 8 B 279 GLY ILE ALA ASP ALA VAL VAL PHE GLY TRP GLY LEU GLY SEQRES 9 B 279 GLY HIS ILE GLY ILE GLU MET ILE ALA ARG TYR PRO GLU SEQRES 10 B 279 MET ARG GLY LEU MET ILE THR GLY THR PRO PRO VAL ALA SEQRES 11 B 279 ARG GLU GLU VAL GLY GLN GLY PHE LYS SER GLY PRO ASP SEQRES 12 B 279 MET ALA LEU ALA GLY GLN GLU ILE PHE SER GLU ARG ASP SEQRES 13 B 279 VAL GLU SER TYR ALA ARG SER THR CYS GLY GLU PRO PHE SEQRES 14 B 279 GLU ALA SER LEU LEU ASP ILE VAL ALA ARG THR ASP GLY SEQRES 15 B 279 ARG ALA ARG ARG ILE MET PHE GLU LYS PHE GLY SER GLY SEQRES 16 B 279 THR GLY GLY ASN GLN ARG ASP ILE VAL ALA GLU ALA GLN SEQRES 17 B 279 LEU PRO ILE ALA VAL VAL ASN GLY ARG ASP GLU PRO PHE SEQRES 18 B 279 VAL GLU LEU ASP PHE VAL SER LYS VAL LYS PHE GLY ASN SEQRES 19 B 279 LEU TRP GLU GLY LYS THR HIS VAL ILE ASP ASN ALA GLY SEQRES 20 B 279 HIS ALA PRO PHE ARG GLU ALA PRO ALA GLU PHE ASP ALA SEQRES 21 B 279 TYR LEU ALA ARG PHE ILE ARG ASP CYS THR GLN LEU GLU SEQRES 22 B 279 HIS HIS HIS HIS HIS HIS FORMUL 3 HOH *1138(H2 O) HELIX 1 1 SER A 36 ILE A 39 5 4 HELIX 2 2 PHE A 40 GLY A 46 1 7 HELIX 3 3 GLY A 46 LYS A 51 1 6 HELIX 4 4 ASP A 70 TYR A 75 1 6 HELIX 5 5 SER A 76 LEU A 91 1 16 HELIX 6 6 GLY A 102 TYR A 115 1 14 HELIX 7 7 ALA A 130 GLU A 132 5 3 HELIX 8 8 GLU A 133 PHE A 138 1 6 HELIX 9 9 GLY A 141 ALA A 147 1 7 HELIX 10 10 SER A 153 GLY A 166 1 14 HELIX 11 11 ALA A 171 THR A 180 1 10 HELIX 12 12 ASP A 181 GLY A 195 1 15 HELIX 13 13 ASN A 199 ALA A 207 1 9 HELIX 14 14 GLU A 223 SER A 228 1 6 HELIX 15 15 LEU A 235 LYS A 239 5 5 HELIX 16 16 ALA A 249 ALA A 254 1 6 HELIX 17 17 ALA A 254 LEU A 272 1 19 HELIX 18 18 SER B 36 ILE B 39 5 4 HELIX 19 19 PHE B 40 GLY B 46 1 7 HELIX 20 20 GLY B 46 LYS B 51 1 6 HELIX 21 21 ASP B 70 TYR B 75 1 6 HELIX 22 22 SER B 76 GLY B 92 1 17 HELIX 23 23 GLY B 102 TYR B 115 1 14 HELIX 24 24 ALA B 130 GLU B 132 5 3 HELIX 25 25 GLU B 133 PHE B 138 1 6 HELIX 26 26 GLY B 141 ALA B 147 1 7 HELIX 27 27 SER B 153 GLY B 166 1 14 HELIX 28 28 GLU B 170 THR B 180 1 11 HELIX 29 29 ASP B 181 SER B 194 1 14 HELIX 30 30 ASN B 199 ALA B 207 1 9 HELIX 31 31 GLU B 223 SER B 228 1 6 HELIX 32 32 LEU B 235 LYS B 239 5 5 HELIX 33 33 ALA B 249 ALA B 254 1 6 HELIX 34 34 ALA B 254 GLN B 271 1 18 SHEET 1 A 8 ASN A 4 THR A 10 0 SHEET 2 A 8 GLY A 13 GLU A 19 -1 O VAL A 17 N HIS A 6 SHEET 3 A 8 TRP A 52 PRO A 57 -1 O ALA A 56 N ARG A 18 SHEET 4 A 8 GLY A 24 ILE A 30 1 N LEU A 27 O ILE A 55 SHEET 5 A 8 VAL A 97 TRP A 101 1 O PHE A 99 N LEU A 28 SHEET 6 A 8 GLY A 120 THR A 124 1 O MET A 122 N VAL A 98 SHEET 7 A 8 ILE A 211 GLY A 216 1 O ALA A 212 N ILE A 123 SHEET 8 A 8 HIS A 241 ILE A 243 1 O HIS A 241 N VAL A 213 SHEET 1 B 8 ASN B 4 THR B 10 0 SHEET 2 B 8 GLY B 13 GLU B 19 -1 O VAL B 17 N HIS B 6 SHEET 3 B 8 TRP B 52 PRO B 57 -1 O ALA B 56 N ARG B 18 SHEET 4 B 8 GLY B 24 ILE B 30 1 N LEU B 27 O ILE B 55 SHEET 5 B 8 VAL B 97 TRP B 101 1 O PHE B 99 N LEU B 28 SHEET 6 B 8 GLY B 120 THR B 124 1 O MET B 122 N VAL B 98 SHEET 7 B 8 ILE B 211 GLY B 216 1 O ALA B 212 N ILE B 123 SHEET 8 B 8 HIS B 241 ILE B 243 1 O ILE B 243 N ASN B 215 CISPEP 1 GLU A 167 PRO A 168 0 4.73 CISPEP 2 GLU B 167 PRO B 168 0 1.74 CRYST1 42.426 129.941 44.387 90.00 110.84 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023570 0.000000 0.008972 0.00000 SCALE2 0.000000 0.007696 0.000000 0.00000 SCALE3 0.000000 0.000000 0.024106 0.00000