data_4GBS # _entry.id 4GBS # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4GBS pdb_00004gbs 10.2210/pdb4gbs/pdb RCSB RCSB073986 ? ? WWPDB D_1000073986 ? ? # _pdbx_database_related.db_name TargetTrack _pdbx_database_related.db_id JCSG-396942 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 4GBS _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2012-07-27 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Crystal structure of a putative lipoprotein (BF2707) from Bacteroides fragilis NCTC 9343 at 2.75 A resolution' _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # _cell.entry_id 4GBS _cell.length_a 66.009 _cell.length_b 66.009 _cell.length_c 263.457 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 16 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4GBS _symmetry.Int_Tables_number 91 _symmetry.space_group_name_H-M 'P 41 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Putative lipoprotein' 23110.564 2 ? ? ? ? 2 non-polymer syn 'SULFATE ION' 96.063 2 ? ? ? ? 3 water nat water 18.015 72 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GNGILSSLYDEPETA(MLY)DFGFITIDHANHSGTVRVDATQYT(MLY)WNYINLHTLQIDSA(MLY)VTAEGADDPDTW DLAIHRYDVKTNGGEVLETDYQSLSAL(MLY)NAGS(MSE)PQGIFVADEWTTN(MLY)IAVDVSH(MSE)(MSE)EDNG YLIYAPSDFNPELS(MLY)WLNVDTSE(MSE)PPIYTPSN(MLY)VYLLR(MSE)(MLY)DDT(MSE)AAIRLVSY (MSE)NAAGI(MLY)GY(MSE)TFDYIYPYEP ; _entity_poly.pdbx_seq_one_letter_code_can ;GNGILSSLYDEPETAKDFGFITIDHANHSGTVRVDATQYTKWNYINLHTLQIDSAKVTAEGADDPDTWDLAIHRYDVKTN GGEVLETDYQSLSALKNAGSMPQGIFVADEWTTNKIAVDVSHMMEDNGYLIYAPSDFNPELSKWLNVDTSEMPPIYTPSN KVYLLRMKDDTMAAIRLVSYMNAAGIKGYMTFDYIYPYEP ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier JCSG-396942 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 ASN n 1 3 GLY n 1 4 ILE n 1 5 LEU n 1 6 SER n 1 7 SER n 1 8 LEU n 1 9 TYR n 1 10 ASP n 1 11 GLU n 1 12 PRO n 1 13 GLU n 1 14 THR n 1 15 ALA n 1 16 MLY n 1 17 ASP n 1 18 PHE n 1 19 GLY n 1 20 PHE n 1 21 ILE n 1 22 THR n 1 23 ILE n 1 24 ASP n 1 25 HIS n 1 26 ALA n 1 27 ASN n 1 28 HIS n 1 29 SER n 1 30 GLY n 1 31 THR n 1 32 VAL n 1 33 ARG n 1 34 VAL n 1 35 ASP n 1 36 ALA n 1 37 THR n 1 38 GLN n 1 39 TYR n 1 40 THR n 1 41 MLY n 1 42 TRP n 1 43 ASN n 1 44 TYR n 1 45 ILE n 1 46 ASN n 1 47 LEU n 1 48 HIS n 1 49 THR n 1 50 LEU n 1 51 GLN n 1 52 ILE n 1 53 ASP n 1 54 SER n 1 55 ALA n 1 56 MLY n 1 57 VAL n 1 58 THR n 1 59 ALA n 1 60 GLU n 1 61 GLY n 1 62 ALA n 1 63 ASP n 1 64 ASP n 1 65 PRO n 1 66 ASP n 1 67 THR n 1 68 TRP n 1 69 ASP n 1 70 LEU n 1 71 ALA n 1 72 ILE n 1 73 HIS n 1 74 ARG n 1 75 TYR n 1 76 ASP n 1 77 VAL n 1 78 LYS n 1 79 THR n 1 80 ASN n 1 81 GLY n 1 82 GLY n 1 83 GLU n 1 84 VAL n 1 85 LEU n 1 86 GLU n 1 87 THR n 1 88 ASP n 1 89 TYR n 1 90 GLN n 1 91 SER n 1 92 LEU n 1 93 SER n 1 94 ALA n 1 95 LEU n 1 96 MLY n 1 97 ASN n 1 98 ALA n 1 99 GLY n 1 100 SER n 1 101 MSE n 1 102 PRO n 1 103 GLN n 1 104 GLY n 1 105 ILE n 1 106 PHE n 1 107 VAL n 1 108 ALA n 1 109 ASP n 1 110 GLU n 1 111 TRP n 1 112 THR n 1 113 THR n 1 114 ASN n 1 115 MLY n 1 116 ILE n 1 117 ALA n 1 118 VAL n 1 119 ASP n 1 120 VAL n 1 121 SER n 1 122 HIS n 1 123 MSE n 1 124 MSE n 1 125 GLU n 1 126 ASP n 1 127 ASN n 1 128 GLY n 1 129 TYR n 1 130 LEU n 1 131 ILE n 1 132 TYR n 1 133 ALA n 1 134 PRO n 1 135 SER n 1 136 ASP n 1 137 PHE n 1 138 ASN n 1 139 PRO n 1 140 GLU n 1 141 LEU n 1 142 SER n 1 143 MLY n 1 144 TRP n 1 145 LEU n 1 146 ASN n 1 147 VAL n 1 148 ASP n 1 149 THR n 1 150 SER n 1 151 GLU n 1 152 MSE n 1 153 PRO n 1 154 PRO n 1 155 ILE n 1 156 TYR n 1 157 THR n 1 158 PRO n 1 159 SER n 1 160 ASN n 1 161 MLY n 1 162 VAL n 1 163 TYR n 1 164 LEU n 1 165 LEU n 1 166 ARG n 1 167 MSE n 1 168 MLY n 1 169 ASP n 1 170 ASP n 1 171 THR n 1 172 MSE n 1 173 ALA n 1 174 ALA n 1 175 ILE n 1 176 ARG n 1 177 LEU n 1 178 VAL n 1 179 SER n 1 180 TYR n 1 181 MSE n 1 182 ASN n 1 183 ALA n 1 184 ALA n 1 185 GLY n 1 186 ILE n 1 187 MLY n 1 188 GLY n 1 189 TYR n 1 190 MSE n 1 191 THR n 1 192 PHE n 1 193 ASP n 1 194 TYR n 1 195 ILE n 1 196 TYR n 1 197 PRO n 1 198 TYR n 1 199 GLU n 1 200 PRO n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'BF2707, BF9343_2622' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'NCTC 9343' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Bacteroides fragilis' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 272559 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia Coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain HK100 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name SpeedET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q5LBW5_BACFN _struct_ref.pdbx_db_accession Q5LBW5 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;NGILSSLYDEPETAKDFGFITIDHANHSGTVRVDATQYTKWNYINLHTLQIDSAKVTAEGADDPDTWDLAIHRYDVKTNG GEVLETDYQSLSALKNAGSMPQGIFVADEWTTNKIAVDVSHMMEDNGYLIYAPSDFNPELSKWLNVDTSEMPPIYTPSNK VYLLRMKDDTMAAIRLVSYMNAAGIKGYMTFDYIYPYEP ; _struct_ref.pdbx_align_begin 25 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4GBS A 2 ? 200 ? Q5LBW5 25 ? 223 ? 25 223 2 1 4GBS B 2 ? 200 ? Q5LBW5 25 ? 223 ? 25 223 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4GBS GLY A 1 ? UNP Q5LBW5 ? ? 'expression tag' 0 1 2 4GBS GLY B 1 ? UNP Q5LBW5 ? ? 'expression tag' 0 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MLY 'L-peptide linking' n N-DIMETHYL-LYSINE ? 'C8 H18 N2 O2' 174.241 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 4GBS # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 3.10 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 60.38 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 9.0 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details '2.40M ammonium sulfate, 0.1M Bicine pH 9.0, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector PIXEL _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.details 'Rhodium-coated vertical and horizontal focusing mirrors; liquid-nitrogen cooled double crystal Si(111) monochromator' _diffrn_detector.pdbx_collection_date 2012-05-31 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'double crystal Si(111)' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.9795 1.0 2 0.9184 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline BL12-2 _diffrn_source.type 'SSRL BEAMLINE BL12-2' _diffrn_source.pdbx_wavelength_list 0.9795,0.9184 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.entry_id 4GBS _reflns.d_resolution_high 2.48 _reflns.d_resolution_low 46.676 _reflns.pdbx_number_measured_all 137544 _reflns.number_obs 21701 _reflns.pdbx_Rmerge_I_obs 0.072 _reflns.pdbx_netI_over_sigmaI 14.650 _reflns.percent_possible_obs 99.600 _reflns.B_iso_Wilson_estimate 76.090 _reflns.Rmerge_F_obs 0.999 _reflns.observed_criterion_sigma_I -3.000 _reflns.pdbx_Rrim_I_all 0.078 _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 _reflns.number_all ? _reflns.observed_criterion_sigma_F ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.pdbx_rejects _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.meanI_over_sigI_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2.480 2.570 14273 ? 2133 ? 1.170 1.7 ? ? ? ? ? 2138 ? ? 0.705 ? ? 99.800 1.269 ? 1 1 2.570 2.670 13410 ? 2065 ? 0.775 2.4 ? ? ? ? ? 2076 ? ? 0.785 ? ? 99.500 0.843 ? 2 1 2.670 2.790 12508 ? 2079 ? 0.563 3.2 ? ? ? ? ? 2089 ? ? 0.870 ? ? 99.500 0.617 ? 3 1 2.790 2.940 13972 ? 2176 ? 0.297 5.7 ? ? ? ? ? 2178 ? ? 0.954 ? ? 99.900 0.324 ? 4 1 2.940 3.120 14282 ? 2101 ? 0.180 9.3 ? ? ? ? ? 2102 ? ? 0.986 ? ? 100.000 0.195 ? 5 1 3.120 3.360 14460 ? 2157 ? 0.105 14.4 ? ? ? ? ? 2162 ? ? 0.995 ? ? 99.800 0.114 ? 6 1 3.360 3.700 14086 ? 2176 ? 0.067 20.6 ? ? ? ? ? 2178 ? ? 0.998 ? ? 99.900 0.072 ? 7 1 3.700 4.230 12596 ? 2174 ? 0.050 24.8 ? ? ? ? ? 2186 ? ? 0.998 ? ? 99.500 0.055 ? 8 1 4.230 5.310 14381 ? 2215 ? 0.044 30.8 ? ? ? ? ? 2222 ? ? 0.999 ? ? 99.700 0.048 ? 9 1 5.310 46.676 13576 ? 2441 ? 0.050 30.0 ? ? ? ? ? 2483 ? ? 0.998 ? ? 98.300 0.055 ? 10 1 # _refine.entry_id 4GBS _refine.ls_d_res_high 2.4800 _refine.ls_d_res_low 46.676 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.6700 _refine.ls_number_reflns_obs 21634 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;1. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 2. ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B FACTORS. ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U FACTORS. 3. THE MAD PHASES WERE USED AS RESTRAINTS DURING REFINEMENT. 4. NCS RESTRAINTS WERE APPLIED USING BUSTER'S LSSR RESTRAINT REPRESENTATION (-AUTONCS).5.THE PROTEIN WAS SUBJECTED TO REDUCTIVE METHYLATION PRIOR TO CRYSTALLIZATION. LYSINE 101 APPEARS TO HAVE BEEN PROTECTED FROM REDUCTIVE METHYLATION AND WAS MODELED AS LYSINE. ALL OTHER LYSINES HAVE BEEN MODELED AS N-DIMETHYL-LYSINE (MLY). 6. SULFATE MOLECULES(SO4) FROM THE CRYSTALLIZATION HAVE BEEN MODELED INTO THE STRUCTURE. ; _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1983 _refine.ls_R_factor_R_work 0.1969 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2251 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 5.1100 _refine.ls_number_reflns_R_free 1106 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 76.5292 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] -2.5059 _refine.aniso_B[2][2] -2.5059 _refine.aniso_B[3][3] 5.0117 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9462 _refine.correlation_coeff_Fo_to_Fc_free 0.9335 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.solvent_model_details ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 180.260 _refine.B_iso_min 37.510 _refine.pdbx_overall_phase_error ? _refine.occupancy_max 1.000 _refine.occupancy_min 0.500 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 4GBS _refine_analyze.Luzzati_coordinate_error_obs 0.467 _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2933 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 10 _refine_hist.number_atoms_solvent 72 _refine_hist.number_atoms_total 3015 _refine_hist.d_res_high 2.4800 _refine_hist.d_res_low 46.676 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id t_dihedral_angle_d 1322 ? ? 8.000 SINUSOIDAL 'X-RAY DIFFRACTION' t_trig_c_planes 78 ? ? 2.000 HARMONIC 'X-RAY DIFFRACTION' t_gen_planes 431 ? ? 5.000 HARMONIC 'X-RAY DIFFRACTION' t_it 3027 ? ? 20.000 HARMONIC 'X-RAY DIFFRACTION' t_nbd ? ? ? ? ? 'X-RAY DIFFRACTION' t_improper_torsion ? ? ? ? ? 'X-RAY DIFFRACTION' t_pseud_angle ? ? ? ? ? 'X-RAY DIFFRACTION' t_chiral_improper_torsion 407 ? ? 5.000 SEMIHARMONIC 'X-RAY DIFFRACTION' t_sum_occupancies ? ? ? ? ? 'X-RAY DIFFRACTION' t_utility_distance ? ? ? ? ? 'X-RAY DIFFRACTION' t_utility_angle ? ? ? ? ? 'X-RAY DIFFRACTION' t_utility_torsion ? ? ? ? ? 'X-RAY DIFFRACTION' t_ideal_dist_contact 3419 ? ? 4.000 SEMIHARMONIC 'X-RAY DIFFRACTION' t_bond_d 3027 0.009 ? 2.000 HARMONIC 'X-RAY DIFFRACTION' t_angle_deg 4143 1.090 ? 2.000 HARMONIC 'X-RAY DIFFRACTION' t_omega_torsion ? 3.580 ? ? ? 'X-RAY DIFFRACTION' t_other_torsion ? 2.130 ? ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.d_res_high 2.4800 _refine_ls_shell.d_res_low 2.6000 _refine_ls_shell.pdbx_total_number_of_bins_used 11 _refine_ls_shell.percent_reflns_obs 99.6700 _refine_ls_shell.number_reflns_R_work 2641 _refine_ls_shell.R_factor_all 0.2326 _refine_ls_shell.R_factor_R_work 0.2300 _refine_ls_shell.R_factor_R_free 0.2816 _refine_ls_shell.percent_reflns_R_free 5.4100 _refine_ls_shell.number_reflns_R_free 151 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 2792 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 4GBS _struct.title 'Crystal structure of a putative lipoprotein (BF2707) from Bacteroides fragilis NCTC 9343 at 2.75 A resolution' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag Y _struct.pdbx_model_type_details ? # _struct_keywords.text ;PF14064 family, transport, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-BIOLOGY, HEME-BINDING PROTEIN, LIPID BINDING PROTEIN ; _struct_keywords.pdbx_keywords 'LIPID BINDING PROTEIN' _struct_keywords.entry_id 4GBS # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 14 ? PHE A 18 ? THR A 37 PHE A 41 5 ? 5 HELX_P HELX_P2 2 SER A 91 ? GLY A 99 ? SER A 114 GLY A 122 1 ? 9 HELX_P HELX_P3 3 GLU A 140 ? MLY A 143 ? GLU A 163 MLY A 166 5 ? 4 HELX_P HELX_P4 4 SER B 91 ? GLY B 99 ? SER B 114 GLY B 122 1 ? 9 HELX_P HELX_P5 5 GLU B 140 ? MLY B 143 ? GLU B 163 MLY B 166 5 ? 4 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A ALA 15 C ? ? ? 1_555 A MLY 16 N ? ? A ALA 38 A MLY 39 1_555 ? ? ? ? ? ? ? 1.353 ? ? covale2 covale both ? A MLY 16 C ? ? ? 1_555 A ASP 17 N ? ? A MLY 39 A ASP 40 1_555 ? ? ? ? ? ? ? 1.352 ? ? covale3 covale both ? A THR 40 C ? ? ? 1_555 A MLY 41 N ? ? A THR 63 A MLY 64 1_555 ? ? ? ? ? ? ? 1.321 ? ? covale4 covale both ? A MLY 41 C ? ? ? 1_555 A TRP 42 N ? ? A MLY 64 A TRP 65 1_555 ? ? ? ? ? ? ? 1.337 ? ? covale5 covale both ? A ALA 55 C ? ? ? 1_555 A MLY 56 N ? ? A ALA 78 A MLY 79 1_555 ? ? ? ? ? ? ? 1.341 ? ? covale6 covale both ? A MLY 56 C ? ? ? 1_555 A VAL 57 N ? ? A MLY 79 A VAL 80 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale7 covale both ? A LEU 95 C ? ? ? 1_555 A MLY 96 N ? ? A LEU 118 A MLY 119 1_555 ? ? ? ? ? ? ? 1.352 ? ? covale8 covale both ? A MLY 96 C ? ? ? 1_555 A ASN 97 N ? ? A MLY 119 A ASN 120 1_555 ? ? ? ? ? ? ? 1.351 ? ? covale9 covale both ? A SER 100 C ? ? ? 1_555 A MSE 101 N ? ? A SER 123 A MSE 124 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale10 covale both ? A MSE 101 C ? ? ? 1_555 A PRO 102 N ? ? A MSE 124 A PRO 125 1_555 ? ? ? ? ? ? ? 1.357 ? ? covale11 covale both ? A ASN 114 C ? ? ? 1_555 A MLY 115 N ? ? A ASN 137 A MLY 138 1_555 ? ? ? ? ? ? ? 1.355 ? ? covale12 covale both ? A MLY 115 C ? ? ? 1_555 A ILE 116 N ? ? A MLY 138 A ILE 139 1_555 ? ? ? ? ? ? ? 1.339 ? ? covale13 covale both ? A HIS 122 C ? ? ? 1_555 A MSE 123 N ? ? A HIS 145 A MSE 146 1_555 ? ? ? ? ? ? ? 1.345 ? ? covale14 covale both ? A SER 142 C ? ? ? 1_555 A MLY 143 N ? ? A SER 165 A MLY 166 1_555 ? ? ? ? ? ? ? 1.349 ? ? covale15 covale both ? A MLY 143 C ? ? ? 1_555 A TRP 144 N ? ? A MLY 166 A TRP 167 1_555 ? ? ? ? ? ? ? 1.365 ? ? covale16 covale both ? A GLU 151 C ? ? ? 1_555 A MSE 152 N ? ? A GLU 174 A MSE 175 1_555 ? ? ? ? ? ? ? 1.343 ? ? covale17 covale both ? A MSE 152 C ? ? ? 1_555 A PRO 153 N ? ? A MSE 175 A PRO 176 1_555 ? ? ? ? ? ? ? 1.355 ? ? covale18 covale both ? A ASN 160 C ? ? ? 1_555 A MLY 161 N ? ? A ASN 183 A MLY 184 1_555 ? ? ? ? ? ? ? 1.344 ? ? covale19 covale both ? A MLY 161 C ? ? ? 1_555 A VAL 162 N ? ? A MLY 184 A VAL 185 1_555 ? ? ? ? ? ? ? 1.338 ? ? covale20 covale both ? A ARG 166 C ? ? ? 1_555 A MSE 167 N ? ? A ARG 189 A MSE 190 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale21 covale both ? A MSE 167 C ? ? ? 1_555 A MLY 168 N ? ? A MSE 190 A MLY 191 1_555 ? ? ? ? ? ? ? 1.351 ? ? covale22 covale both ? A MLY 168 C ? ? ? 1_555 A ASP 169 N ? ? A MLY 191 A ASP 192 1_555 ? ? ? ? ? ? ? 1.358 ? ? covale23 covale both ? A THR 171 C ? ? ? 1_555 A MSE 172 N ? ? A THR 194 A MSE 195 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale24 covale both ? A MSE 172 C ? ? ? 1_555 A ALA 173 N ? ? A MSE 195 A ALA 196 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale25 covale both ? A TYR 180 C ? ? ? 1_555 A MSE 181 N ? ? A TYR 203 A MSE 204 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale26 covale both ? A MSE 181 C ? ? ? 1_555 A ASN 182 N ? ? A MSE 204 A ASN 205 1_555 ? ? ? ? ? ? ? 1.340 ? ? covale27 covale both ? A ILE 186 C ? ? ? 1_555 A MLY 187 N ? ? A ILE 209 A MLY 210 1_555 ? ? ? ? ? ? ? 1.321 ? ? covale28 covale both ? A MLY 187 C ? ? ? 1_555 A GLY 188 N ? ? A MLY 210 A GLY 211 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale29 covale both ? A TYR 189 C ? ? ? 1_555 A MSE 190 N ? ? A TYR 212 A MSE 213 1_555 ? ? ? ? ? ? ? 1.347 ? ? covale30 covale both ? A MSE 190 C ? ? ? 1_555 A THR 191 N ? ? A MSE 213 A THR 214 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale31 covale both ? B ALA 15 C ? ? ? 1_555 B MLY 16 N ? ? B ALA 38 B MLY 39 1_555 ? ? ? ? ? ? ? 1.360 ? ? covale32 covale both ? B MLY 16 C ? ? ? 1_555 B ASP 17 N ? ? B MLY 39 B ASP 40 1_555 ? ? ? ? ? ? ? 1.358 ? ? covale33 covale both ? B THR 40 C ? ? ? 1_555 B MLY 41 N ? ? B THR 63 B MLY 64 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale34 covale both ? B MLY 41 C ? ? ? 1_555 B TRP 42 N ? ? B MLY 64 B TRP 65 1_555 ? ? ? ? ? ? ? 1.352 ? ? covale35 covale both ? B ALA 55 C ? ? ? 1_555 B MLY 56 N ? ? B ALA 78 B MLY 79 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale36 covale both ? B MLY 56 C ? ? ? 1_555 B VAL 57 N ? ? B MLY 79 B VAL 80 1_555 ? ? ? ? ? ? ? 1.319 ? ? covale37 covale both ? B LEU 95 C ? ? ? 1_555 B MLY 96 N ? ? B LEU 118 B MLY 119 1_555 ? ? ? ? ? ? ? 1.351 ? ? covale38 covale both ? B MLY 96 C ? ? ? 1_555 B ASN 97 N ? ? B MLY 119 B ASN 120 1_555 ? ? ? ? ? ? ? 1.350 ? ? covale39 covale both ? B SER 100 C ? ? ? 1_555 B MSE 101 N ? ? B SER 123 B MSE 124 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale40 covale both ? B MSE 101 C ? ? ? 1_555 B PRO 102 N ? ? B MSE 124 B PRO 125 1_555 ? ? ? ? ? ? ? 1.356 ? ? covale41 covale both ? B ASN 114 C ? ? ? 1_555 B MLY 115 N ? ? B ASN 137 B MLY 138 1_555 ? ? ? ? ? ? ? 1.347 ? ? covale42 covale both ? B MLY 115 C ? ? ? 1_555 B ILE 116 N ? ? B MLY 138 B ILE 139 1_555 ? ? ? ? ? ? ? 1.345 ? ? covale43 covale both ? B HIS 122 C ? ? ? 1_555 B MSE 123 N ? ? B HIS 145 B MSE 146 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale44 covale both ? B MSE 123 C ? ? ? 1_555 B MSE 124 N ? ? B MSE 146 B MSE 147 1_555 ? ? ? ? ? ? ? 1.348 ? ? covale45 covale both ? B MSE 124 C ? ? ? 1_555 B GLU 125 N ? ? B MSE 147 B GLU 148 1_555 ? ? ? ? ? ? ? 1.356 ? ? covale46 covale both ? B SER 142 C ? ? ? 1_555 B MLY 143 N ? ? B SER 165 B MLY 166 1_555 ? ? ? ? ? ? ? 1.343 ? ? covale47 covale both ? B MLY 143 C ? ? ? 1_555 B TRP 144 N ? ? B MLY 166 B TRP 167 1_555 ? ? ? ? ? ? ? 1.371 ? ? covale48 covale both ? B GLU 151 C ? ? ? 1_555 B MSE 152 N ? ? B GLU 174 B MSE 175 1_555 ? ? ? ? ? ? ? 1.346 ? ? covale49 covale both ? B MSE 152 C ? ? ? 1_555 B PRO 153 N ? ? B MSE 175 B PRO 176 1_555 ? ? ? ? ? ? ? 1.359 ? ? covale50 covale both ? B ASN 160 C ? ? ? 1_555 B MLY 161 N ? ? B ASN 183 B MLY 184 1_555 ? ? ? ? ? ? ? 1.346 ? ? covale51 covale both ? B MLY 161 C ? ? ? 1_555 B VAL 162 N ? ? B MLY 184 B VAL 185 1_555 ? ? ? ? ? ? ? 1.338 ? ? covale52 covale both ? B ARG 166 C ? ? ? 1_555 B MSE 167 N ? ? B ARG 189 B MSE 190 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale53 covale both ? B MSE 167 C ? ? ? 1_555 B MLY 168 N ? ? B MSE 190 B MLY 191 1_555 ? ? ? ? ? ? ? 1.351 ? ? covale54 covale both ? B MLY 168 C ? ? ? 1_555 B ASP 169 N ? ? B MLY 191 B ASP 192 1_555 ? ? ? ? ? ? ? 1.359 ? ? covale55 covale both ? B THR 171 C ? ? ? 1_555 B MSE 172 N ? ? B THR 194 B MSE 195 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale56 covale both ? B MSE 172 C ? ? ? 1_555 B ALA 173 N ? ? B MSE 195 B ALA 196 1_555 ? ? ? ? ? ? ? 1.340 ? ? covale57 covale both ? B TYR 180 C ? ? ? 1_555 B MSE 181 N ? ? B TYR 203 B MSE 204 1_555 ? ? ? ? ? ? ? 1.361 ? ? covale58 covale both ? B MSE 181 C ? ? ? 1_555 B ASN 182 N ? ? B MSE 204 B ASN 205 1_555 ? ? ? ? ? ? ? 1.350 ? ? covale59 covale both ? B ILE 186 C ? ? ? 1_555 B MLY 187 N ? ? B ILE 209 B MLY 210 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale60 covale both ? B MLY 187 C ? ? ? 1_555 B GLY 188 N ? ? B MLY 210 B GLY 211 1_555 ? ? ? ? ? ? ? 1.320 ? ? covale61 covale both ? B TYR 189 C ? ? ? 1_555 B MSE 190 N ? ? B TYR 212 B MSE 213 1_555 ? ? ? ? ? ? ? 1.343 ? ? covale62 covale both ? B MSE 190 C ? ? ? 1_555 B THR 191 N ? ? B MSE 213 B THR 214 1_555 ? ? ? ? ? ? ? 1.341 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 MSE 152 A . ? MSE 175 A PRO 153 A ? PRO 176 A 1 -1.84 2 TYR 196 A . ? TYR 219 A PRO 197 A ? PRO 220 A 1 0.51 3 MSE 152 B . ? MSE 175 B PRO 153 B ? PRO 176 B 1 1.29 4 TYR 196 B . ? TYR 219 B PRO 197 B ? PRO 220 B 1 0.63 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 7 ? B ? 5 ? C ? 2 ? D ? 2 ? E ? 7 ? F ? 5 ? G ? 2 ? H ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel C 1 2 ? anti-parallel D 1 2 ? anti-parallel E 1 2 ? anti-parallel E 2 3 ? anti-parallel E 3 4 ? anti-parallel E 4 5 ? anti-parallel E 5 6 ? anti-parallel E 6 7 ? anti-parallel F 1 2 ? anti-parallel F 2 3 ? anti-parallel F 3 4 ? anti-parallel F 4 5 ? anti-parallel G 1 2 ? anti-parallel H 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLY A 19 ? ASP A 24 ? GLY A 42 ASP A 47 A 2 SER A 29 ? ASP A 35 ? SER A 52 ASP A 58 A 3 MLY A 187 ? ILE A 195 ? MLY A 210 ILE A 218 A 4 MSE A 172 ? MSE A 181 ? MSE A 195 MSE A 204 A 5 TYR A 163 ? ARG A 166 ? TYR A 186 ARG A 189 A 6 GLU A 83 ? GLU A 86 ? GLU A 106 GLU A 109 A 7 VAL A 107 ? ALA A 108 ? VAL A 130 ALA A 131 B 1 GLY A 61 ? ALA A 62 ? GLY A 84 ALA A 85 B 2 GLN A 51 ? THR A 58 ? GLN A 74 THR A 81 B 3 MLY A 41 ? ASN A 46 ? MLY A 64 ASN A 69 B 4 LEU A 70 ? HIS A 73 ? LEU A 93 HIS A 96 B 5 ASP A 76 ? THR A 79 ? ASP A 99 THR A 102 C 1 GLU A 110 ? ASP A 119 ? GLU A 133 ASP A 142 C 2 ILE A 131 ? PHE A 137 ? ILE A 154 PHE A 160 D 1 LEU A 145 ? ASP A 148 ? LEU A 168 ASP A 171 D 2 ILE A 155 ? PRO A 158 ? ILE A 178 PRO A 181 E 1 GLY B 19 ? ASP B 24 ? GLY B 42 ASP B 47 E 2 SER B 29 ? ASP B 35 ? SER B 52 ASP B 58 E 3 MLY B 187 ? ILE B 195 ? MLY B 210 ILE B 218 E 4 MSE B 172 ? MSE B 181 ? MSE B 195 MSE B 204 E 5 TYR B 163 ? ARG B 166 ? TYR B 186 ARG B 189 E 6 GLU B 83 ? GLU B 86 ? GLU B 106 GLU B 109 E 7 VAL B 107 ? ALA B 108 ? VAL B 130 ALA B 131 F 1 GLY B 61 ? ALA B 62 ? GLY B 84 ALA B 85 F 2 GLN B 51 ? THR B 58 ? GLN B 74 THR B 81 F 3 MLY B 41 ? ASN B 46 ? MLY B 64 ASN B 69 F 4 LEU B 70 ? HIS B 73 ? LEU B 93 HIS B 96 F 5 ASP B 76 ? THR B 79 ? ASP B 99 THR B 102 G 1 GLU B 110 ? ASP B 119 ? GLU B 133 ASP B 142 G 2 ILE B 131 ? PHE B 137 ? ILE B 154 PHE B 160 H 1 LEU B 145 ? ASP B 148 ? LEU B 168 ASP B 171 H 2 ILE B 155 ? PRO B 158 ? ILE B 178 PRO B 181 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N GLY A 19 ? N GLY A 42 O ARG A 33 ? O ARG A 56 A 2 3 N VAL A 32 ? N VAL A 55 O PHE A 192 ? O PHE A 215 A 3 4 O ASP A 193 ? O ASP A 216 N ARG A 176 ? N ARG A 199 A 4 5 O ILE A 175 ? O ILE A 198 N TYR A 163 ? N TYR A 186 A 5 6 O ARG A 166 ? O ARG A 189 N GLU A 83 ? N GLU A 106 A 6 7 N VAL A 84 ? N VAL A 107 O VAL A 107 ? O VAL A 130 B 1 2 O GLY A 61 ? O GLY A 84 N THR A 58 ? N THR A 81 B 2 3 O GLN A 51 ? O GLN A 74 N ASN A 46 ? N ASN A 69 B 3 4 N ILE A 45 ? N ILE A 68 O LEU A 70 ? O LEU A 93 B 4 5 N HIS A 73 ? N HIS A 96 O ASP A 76 ? O ASP A 99 C 1 2 N GLU A 110 ? N GLU A 133 O PHE A 137 ? O PHE A 160 D 1 2 N ASN A 146 ? N ASN A 169 O THR A 157 ? O THR A 180 E 1 2 N GLY B 19 ? N GLY B 42 O ARG B 33 ? O ARG B 56 E 2 3 N VAL B 34 ? N VAL B 57 O MSE B 190 ? O MSE B 213 E 3 4 O THR B 191 ? O THR B 214 N VAL B 178 ? N VAL B 201 E 4 5 O ILE B 175 ? O ILE B 198 N TYR B 163 ? N TYR B 186 E 5 6 O ARG B 166 ? O ARG B 189 N GLU B 83 ? N GLU B 106 E 6 7 N VAL B 84 ? N VAL B 107 O VAL B 107 ? O VAL B 130 F 1 2 O GLY B 61 ? O GLY B 84 N THR B 58 ? N THR B 81 F 2 3 O GLN B 51 ? O GLN B 74 N ASN B 46 ? N ASN B 69 F 3 4 N ILE B 45 ? N ILE B 68 O LEU B 70 ? O LEU B 93 F 4 5 N HIS B 73 ? N HIS B 96 O ASP B 76 ? O ASP B 99 G 1 2 N VAL B 118 ? N VAL B 141 O ILE B 131 ? O ILE B 154 H 1 2 N ASN B 146 ? N ASN B 169 O THR B 157 ? O THR B 180 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A SO4 301 ? 4 'BINDING SITE FOR RESIDUE SO4 A 301' AC2 Software B SO4 301 ? 3 'BINDING SITE FOR RESIDUE SO4 B 301' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 SER A 91 ? SER A 114 . ? 1_555 ? 2 AC1 4 LEU A 92 ? LEU A 115 . ? 1_555 ? 3 AC1 4 SER A 93 ? SER A 116 . ? 1_555 ? 4 AC1 4 HOH E . ? HOH A 433 . ? 1_555 ? 5 AC2 3 GLN B 38 ? GLN B 61 . ? 1_555 ? 6 AC2 3 MLY B 41 ? MLY B 64 . ? 1_555 ? 7 AC2 3 MLY B 56 ? MLY B 79 . ? 1_555 ? # _atom_sites.entry_id 4GBS _atom_sites.fract_transf_matrix[1][1] 0.015149 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015149 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.003796 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 ? ? ? A . n A 1 2 ASN 2 25 ? ? ? A . n A 1 3 GLY 3 26 ? ? ? A . n A 1 4 ILE 4 27 ? ? ? A . n A 1 5 LEU 5 28 ? ? ? A . n A 1 6 SER 6 29 ? ? ? A . n A 1 7 SER 7 30 ? ? ? A . n A 1 8 LEU 8 31 ? ? ? A . n A 1 9 TYR 9 32 ? ? ? A . n A 1 10 ASP 10 33 ? ? ? A . n A 1 11 GLU 11 34 ? ? ? A . n A 1 12 PRO 12 35 35 PRO PRO A . n A 1 13 GLU 13 36 36 GLU GLU A . n A 1 14 THR 14 37 37 THR THR A . n A 1 15 ALA 15 38 38 ALA ALA A . n A 1 16 MLY 16 39 39 MLY MLY A . n A 1 17 ASP 17 40 40 ASP ASP A . n A 1 18 PHE 18 41 41 PHE PHE A . n A 1 19 GLY 19 42 42 GLY GLY A . n A 1 20 PHE 20 43 43 PHE PHE A . n A 1 21 ILE 21 44 44 ILE ILE A . n A 1 22 THR 22 45 45 THR THR A . n A 1 23 ILE 23 46 46 ILE ILE A . n A 1 24 ASP 24 47 47 ASP ASP A . n A 1 25 HIS 25 48 48 HIS HIS A . n A 1 26 ALA 26 49 49 ALA ALA A . n A 1 27 ASN 27 50 50 ASN ASN A . n A 1 28 HIS 28 51 51 HIS HIS A . n A 1 29 SER 29 52 52 SER SER A . n A 1 30 GLY 30 53 53 GLY GLY A . n A 1 31 THR 31 54 54 THR THR A . n A 1 32 VAL 32 55 55 VAL VAL A . n A 1 33 ARG 33 56 56 ARG ARG A . n A 1 34 VAL 34 57 57 VAL VAL A . n A 1 35 ASP 35 58 58 ASP ASP A . n A 1 36 ALA 36 59 59 ALA ALA A . n A 1 37 THR 37 60 60 THR THR A . n A 1 38 GLN 38 61 61 GLN GLN A . n A 1 39 TYR 39 62 62 TYR TYR A . n A 1 40 THR 40 63 63 THR THR A . n A 1 41 MLY 41 64 64 MLY MLY A . n A 1 42 TRP 42 65 65 TRP TRP A . n A 1 43 ASN 43 66 66 ASN ASN A . n A 1 44 TYR 44 67 67 TYR TYR A . n A 1 45 ILE 45 68 68 ILE ILE A . n A 1 46 ASN 46 69 69 ASN ASN A . n A 1 47 LEU 47 70 70 LEU LEU A . n A 1 48 HIS 48 71 71 HIS HIS A . n A 1 49 THR 49 72 72 THR THR A . n A 1 50 LEU 50 73 73 LEU LEU A . n A 1 51 GLN 51 74 74 GLN GLN A . n A 1 52 ILE 52 75 75 ILE ILE A . n A 1 53 ASP 53 76 76 ASP ASP A . n A 1 54 SER 54 77 77 SER SER A . n A 1 55 ALA 55 78 78 ALA ALA A . n A 1 56 MLY 56 79 79 MLY MLY A . n A 1 57 VAL 57 80 80 VAL VAL A . n A 1 58 THR 58 81 81 THR THR A . n A 1 59 ALA 59 82 82 ALA ALA A . n A 1 60 GLU 60 83 83 GLU GLU A . n A 1 61 GLY 61 84 84 GLY GLY A . n A 1 62 ALA 62 85 85 ALA ALA A . n A 1 63 ASP 63 86 86 ASP ASP A . n A 1 64 ASP 64 87 87 ASP ASP A . n A 1 65 PRO 65 88 88 PRO PRO A . n A 1 66 ASP 66 89 89 ASP ASP A . n A 1 67 THR 67 90 90 THR THR A . n A 1 68 TRP 68 91 91 TRP TRP A . n A 1 69 ASP 69 92 92 ASP ASP A . n A 1 70 LEU 70 93 93 LEU LEU A . n A 1 71 ALA 71 94 94 ALA ALA A . n A 1 72 ILE 72 95 95 ILE ILE A . n A 1 73 HIS 73 96 96 HIS HIS A . n A 1 74 ARG 74 97 97 ARG ARG A . n A 1 75 TYR 75 98 98 TYR TYR A . n A 1 76 ASP 76 99 99 ASP ASP A . n A 1 77 VAL 77 100 100 VAL VAL A . n A 1 78 LYS 78 101 101 LYS LYS A . n A 1 79 THR 79 102 102 THR THR A . n A 1 80 ASN 80 103 103 ASN ASN A . n A 1 81 GLY 81 104 104 GLY GLY A . n A 1 82 GLY 82 105 105 GLY GLY A . n A 1 83 GLU 83 106 106 GLU GLU A . n A 1 84 VAL 84 107 107 VAL VAL A . n A 1 85 LEU 85 108 108 LEU LEU A . n A 1 86 GLU 86 109 109 GLU GLU A . n A 1 87 THR 87 110 110 THR THR A . n A 1 88 ASP 88 111 111 ASP ASP A . n A 1 89 TYR 89 112 112 TYR TYR A . n A 1 90 GLN 90 113 113 GLN GLN A . n A 1 91 SER 91 114 114 SER SER A . n A 1 92 LEU 92 115 115 LEU LEU A . n A 1 93 SER 93 116 116 SER SER A . n A 1 94 ALA 94 117 117 ALA ALA A . n A 1 95 LEU 95 118 118 LEU LEU A . n A 1 96 MLY 96 119 119 MLY MLY A . n A 1 97 ASN 97 120 120 ASN ASN A . n A 1 98 ALA 98 121 121 ALA ALA A . n A 1 99 GLY 99 122 122 GLY GLY A . n A 1 100 SER 100 123 123 SER SER A . n A 1 101 MSE 101 124 124 MSE MSE A . n A 1 102 PRO 102 125 125 PRO PRO A . n A 1 103 GLN 103 126 126 GLN GLN A . n A 1 104 GLY 104 127 127 GLY GLY A . n A 1 105 ILE 105 128 128 ILE ILE A . n A 1 106 PHE 106 129 129 PHE PHE A . n A 1 107 VAL 107 130 130 VAL VAL A . n A 1 108 ALA 108 131 131 ALA ALA A . n A 1 109 ASP 109 132 132 ASP ASP A . n A 1 110 GLU 110 133 133 GLU GLU A . n A 1 111 TRP 111 134 134 TRP TRP A . n A 1 112 THR 112 135 135 THR THR A . n A 1 113 THR 113 136 136 THR THR A . n A 1 114 ASN 114 137 137 ASN ASN A . n A 1 115 MLY 115 138 138 MLY MLY A . n A 1 116 ILE 116 139 139 ILE ILE A . n A 1 117 ALA 117 140 140 ALA ALA A . n A 1 118 VAL 118 141 141 VAL VAL A . n A 1 119 ASP 119 142 142 ASP ASP A . n A 1 120 VAL 120 143 143 VAL VAL A . n A 1 121 SER 121 144 144 SER SER A . n A 1 122 HIS 122 145 145 HIS HIS A . n A 1 123 MSE 123 146 146 MSE MSE A . n A 1 124 MSE 124 147 ? ? ? A . n A 1 125 GLU 125 148 ? ? ? A . n A 1 126 ASP 126 149 ? ? ? A . n A 1 127 ASN 127 150 ? ? ? A . n A 1 128 GLY 128 151 151 GLY GLY A . n A 1 129 TYR 129 152 152 TYR TYR A . n A 1 130 LEU 130 153 153 LEU LEU A . n A 1 131 ILE 131 154 154 ILE ILE A . n A 1 132 TYR 132 155 155 TYR TYR A . n A 1 133 ALA 133 156 156 ALA ALA A . n A 1 134 PRO 134 157 157 PRO PRO A . n A 1 135 SER 135 158 158 SER SER A . n A 1 136 ASP 136 159 159 ASP ASP A . n A 1 137 PHE 137 160 160 PHE PHE A . n A 1 138 ASN 138 161 161 ASN ASN A . n A 1 139 PRO 139 162 162 PRO PRO A . n A 1 140 GLU 140 163 163 GLU GLU A . n A 1 141 LEU 141 164 164 LEU LEU A . n A 1 142 SER 142 165 165 SER SER A . n A 1 143 MLY 143 166 166 MLY MLY A . n A 1 144 TRP 144 167 167 TRP TRP A . n A 1 145 LEU 145 168 168 LEU LEU A . n A 1 146 ASN 146 169 169 ASN ASN A . n A 1 147 VAL 147 170 170 VAL VAL A . n A 1 148 ASP 148 171 171 ASP ASP A . n A 1 149 THR 149 172 172 THR THR A . n A 1 150 SER 150 173 173 SER SER A . n A 1 151 GLU 151 174 174 GLU GLU A . n A 1 152 MSE 152 175 175 MSE MSE A . n A 1 153 PRO 153 176 176 PRO PRO A . n A 1 154 PRO 154 177 177 PRO PRO A . n A 1 155 ILE 155 178 178 ILE ILE A . n A 1 156 TYR 156 179 179 TYR TYR A . n A 1 157 THR 157 180 180 THR THR A . n A 1 158 PRO 158 181 181 PRO PRO A . n A 1 159 SER 159 182 182 SER SER A . n A 1 160 ASN 160 183 183 ASN ASN A . n A 1 161 MLY 161 184 184 MLY MLY A . n A 1 162 VAL 162 185 185 VAL VAL A . n A 1 163 TYR 163 186 186 TYR TYR A . n A 1 164 LEU 164 187 187 LEU LEU A . n A 1 165 LEU 165 188 188 LEU LEU A . n A 1 166 ARG 166 189 189 ARG ARG A . n A 1 167 MSE 167 190 190 MSE MSE A . n A 1 168 MLY 168 191 191 MLY MLY A . n A 1 169 ASP 169 192 192 ASP ASP A . n A 1 170 ASP 170 193 193 ASP ASP A . n A 1 171 THR 171 194 194 THR THR A . n A 1 172 MSE 172 195 195 MSE MSE A . n A 1 173 ALA 173 196 196 ALA ALA A . n A 1 174 ALA 174 197 197 ALA ALA A . n A 1 175 ILE 175 198 198 ILE ILE A . n A 1 176 ARG 176 199 199 ARG ARG A . n A 1 177 LEU 177 200 200 LEU LEU A . n A 1 178 VAL 178 201 201 VAL VAL A . n A 1 179 SER 179 202 202 SER SER A . n A 1 180 TYR 180 203 203 TYR TYR A . n A 1 181 MSE 181 204 204 MSE MSE A . n A 1 182 ASN 182 205 205 ASN ASN A . n A 1 183 ALA 183 206 206 ALA ALA A . n A 1 184 ALA 184 207 207 ALA ALA A . n A 1 185 GLY 185 208 208 GLY GLY A . n A 1 186 ILE 186 209 209 ILE ILE A . n A 1 187 MLY 187 210 210 MLY MLY A . n A 1 188 GLY 188 211 211 GLY GLY A . n A 1 189 TYR 189 212 212 TYR TYR A . n A 1 190 MSE 190 213 213 MSE MSE A . n A 1 191 THR 191 214 214 THR THR A . n A 1 192 PHE 192 215 215 PHE PHE A . n A 1 193 ASP 193 216 216 ASP ASP A . n A 1 194 TYR 194 217 217 TYR TYR A . n A 1 195 ILE 195 218 218 ILE ILE A . n A 1 196 TYR 196 219 219 TYR TYR A . n A 1 197 PRO 197 220 220 PRO PRO A . n A 1 198 TYR 198 221 221 TYR TYR A . n A 1 199 GLU 199 222 222 GLU GLU A . n A 1 200 PRO 200 223 223 PRO PRO A . n B 1 1 GLY 1 0 ? ? ? B . n B 1 2 ASN 2 25 ? ? ? B . n B 1 3 GLY 3 26 ? ? ? B . n B 1 4 ILE 4 27 ? ? ? B . n B 1 5 LEU 5 28 ? ? ? B . n B 1 6 SER 6 29 ? ? ? B . n B 1 7 SER 7 30 ? ? ? B . n B 1 8 LEU 8 31 ? ? ? B . n B 1 9 TYR 9 32 ? ? ? B . n B 1 10 ASP 10 33 ? ? ? B . n B 1 11 GLU 11 34 ? ? ? B . n B 1 12 PRO 12 35 ? ? ? B . n B 1 13 GLU 13 36 ? ? ? B . n B 1 14 THR 14 37 ? ? ? B . n B 1 15 ALA 15 38 38 ALA ALA B . n B 1 16 MLY 16 39 39 MLY MLY B . n B 1 17 ASP 17 40 40 ASP ASP B . n B 1 18 PHE 18 41 41 PHE PHE B . n B 1 19 GLY 19 42 42 GLY GLY B . n B 1 20 PHE 20 43 43 PHE PHE B . n B 1 21 ILE 21 44 44 ILE ILE B . n B 1 22 THR 22 45 45 THR THR B . n B 1 23 ILE 23 46 46 ILE ILE B . n B 1 24 ASP 24 47 47 ASP ASP B . n B 1 25 HIS 25 48 48 HIS HIS B . n B 1 26 ALA 26 49 49 ALA ALA B . n B 1 27 ASN 27 50 50 ASN ASN B . n B 1 28 HIS 28 51 51 HIS HIS B . n B 1 29 SER 29 52 52 SER SER B . n B 1 30 GLY 30 53 53 GLY GLY B . n B 1 31 THR 31 54 54 THR THR B . n B 1 32 VAL 32 55 55 VAL VAL B . n B 1 33 ARG 33 56 56 ARG ARG B . n B 1 34 VAL 34 57 57 VAL VAL B . n B 1 35 ASP 35 58 58 ASP ASP B . n B 1 36 ALA 36 59 59 ALA ALA B . n B 1 37 THR 37 60 60 THR THR B . n B 1 38 GLN 38 61 61 GLN GLN B . n B 1 39 TYR 39 62 62 TYR TYR B . n B 1 40 THR 40 63 63 THR THR B . n B 1 41 MLY 41 64 64 MLY MLY B . n B 1 42 TRP 42 65 65 TRP TRP B . n B 1 43 ASN 43 66 66 ASN ASN B . n B 1 44 TYR 44 67 67 TYR TYR B . n B 1 45 ILE 45 68 68 ILE ILE B . n B 1 46 ASN 46 69 69 ASN ASN B . n B 1 47 LEU 47 70 70 LEU LEU B . n B 1 48 HIS 48 71 71 HIS HIS B . n B 1 49 THR 49 72 72 THR THR B . n B 1 50 LEU 50 73 73 LEU LEU B . n B 1 51 GLN 51 74 74 GLN GLN B . n B 1 52 ILE 52 75 75 ILE ILE B . n B 1 53 ASP 53 76 76 ASP ASP B . n B 1 54 SER 54 77 77 SER SER B . n B 1 55 ALA 55 78 78 ALA ALA B . n B 1 56 MLY 56 79 79 MLY MLY B . n B 1 57 VAL 57 80 80 VAL VAL B . n B 1 58 THR 58 81 81 THR THR B . n B 1 59 ALA 59 82 82 ALA ALA B . n B 1 60 GLU 60 83 83 GLU GLU B . n B 1 61 GLY 61 84 84 GLY GLY B . n B 1 62 ALA 62 85 85 ALA ALA B . n B 1 63 ASP 63 86 86 ASP ASP B . n B 1 64 ASP 64 87 87 ASP ASP B . n B 1 65 PRO 65 88 88 PRO PRO B . n B 1 66 ASP 66 89 89 ASP ASP B . n B 1 67 THR 67 90 90 THR THR B . n B 1 68 TRP 68 91 91 TRP TRP B . n B 1 69 ASP 69 92 92 ASP ASP B . n B 1 70 LEU 70 93 93 LEU LEU B . n B 1 71 ALA 71 94 94 ALA ALA B . n B 1 72 ILE 72 95 95 ILE ILE B . n B 1 73 HIS 73 96 96 HIS HIS B . n B 1 74 ARG 74 97 97 ARG ARG B . n B 1 75 TYR 75 98 98 TYR TYR B . n B 1 76 ASP 76 99 99 ASP ASP B . n B 1 77 VAL 77 100 100 VAL VAL B . n B 1 78 LYS 78 101 101 LYS LYS B . n B 1 79 THR 79 102 102 THR THR B . n B 1 80 ASN 80 103 103 ASN ASN B . n B 1 81 GLY 81 104 104 GLY GLY B . n B 1 82 GLY 82 105 105 GLY GLY B . n B 1 83 GLU 83 106 106 GLU GLU B . n B 1 84 VAL 84 107 107 VAL VAL B . n B 1 85 LEU 85 108 108 LEU LEU B . n B 1 86 GLU 86 109 109 GLU GLU B . n B 1 87 THR 87 110 110 THR THR B . n B 1 88 ASP 88 111 111 ASP ASP B . n B 1 89 TYR 89 112 112 TYR TYR B . n B 1 90 GLN 90 113 113 GLN GLN B . n B 1 91 SER 91 114 114 SER SER B . n B 1 92 LEU 92 115 115 LEU LEU B . n B 1 93 SER 93 116 116 SER SER B . n B 1 94 ALA 94 117 117 ALA ALA B . n B 1 95 LEU 95 118 118 LEU LEU B . n B 1 96 MLY 96 119 119 MLY MLY B . n B 1 97 ASN 97 120 120 ASN ASN B . n B 1 98 ALA 98 121 121 ALA ALA B . n B 1 99 GLY 99 122 122 GLY GLY B . n B 1 100 SER 100 123 123 SER SER B . n B 1 101 MSE 101 124 124 MSE MSE B . n B 1 102 PRO 102 125 125 PRO PRO B . n B 1 103 GLN 103 126 126 GLN GLN B . n B 1 104 GLY 104 127 127 GLY GLY B . n B 1 105 ILE 105 128 128 ILE ILE B . n B 1 106 PHE 106 129 129 PHE PHE B . n B 1 107 VAL 107 130 130 VAL VAL B . n B 1 108 ALA 108 131 131 ALA ALA B . n B 1 109 ASP 109 132 132 ASP ASP B . n B 1 110 GLU 110 133 133 GLU GLU B . n B 1 111 TRP 111 134 134 TRP TRP B . n B 1 112 THR 112 135 135 THR THR B . n B 1 113 THR 113 136 136 THR THR B . n B 1 114 ASN 114 137 137 ASN ASN B . n B 1 115 MLY 115 138 138 MLY MLY B . n B 1 116 ILE 116 139 139 ILE ILE B . n B 1 117 ALA 117 140 140 ALA ALA B . n B 1 118 VAL 118 141 141 VAL VAL B . n B 1 119 ASP 119 142 142 ASP ASP B . n B 1 120 VAL 120 143 143 VAL VAL B . n B 1 121 SER 121 144 144 SER SER B . n B 1 122 HIS 122 145 145 HIS HIS B . n B 1 123 MSE 123 146 146 MSE MSE B . n B 1 124 MSE 124 147 147 MSE MSE B . n B 1 125 GLU 125 148 148 GLU GLU B . n B 1 126 ASP 126 149 149 ASP ASP B . n B 1 127 ASN 127 150 150 ASN ASN B . n B 1 128 GLY 128 151 151 GLY GLY B . n B 1 129 TYR 129 152 152 TYR TYR B . n B 1 130 LEU 130 153 153 LEU LEU B . n B 1 131 ILE 131 154 154 ILE ILE B . n B 1 132 TYR 132 155 155 TYR TYR B . n B 1 133 ALA 133 156 156 ALA ALA B . n B 1 134 PRO 134 157 157 PRO PRO B . n B 1 135 SER 135 158 158 SER SER B . n B 1 136 ASP 136 159 159 ASP ASP B . n B 1 137 PHE 137 160 160 PHE PHE B . n B 1 138 ASN 138 161 161 ASN ASN B . n B 1 139 PRO 139 162 162 PRO PRO B . n B 1 140 GLU 140 163 163 GLU GLU B . n B 1 141 LEU 141 164 164 LEU LEU B . n B 1 142 SER 142 165 165 SER SER B . n B 1 143 MLY 143 166 166 MLY MLY B . n B 1 144 TRP 144 167 167 TRP TRP B . n B 1 145 LEU 145 168 168 LEU LEU B . n B 1 146 ASN 146 169 169 ASN ASN B . n B 1 147 VAL 147 170 170 VAL VAL B . n B 1 148 ASP 148 171 171 ASP ASP B . n B 1 149 THR 149 172 172 THR THR B . n B 1 150 SER 150 173 173 SER SER B . n B 1 151 GLU 151 174 174 GLU GLU B . n B 1 152 MSE 152 175 175 MSE MSE B . n B 1 153 PRO 153 176 176 PRO PRO B . n B 1 154 PRO 154 177 177 PRO PRO B . n B 1 155 ILE 155 178 178 ILE ILE B . n B 1 156 TYR 156 179 179 TYR TYR B . n B 1 157 THR 157 180 180 THR THR B . n B 1 158 PRO 158 181 181 PRO PRO B . n B 1 159 SER 159 182 182 SER SER B . n B 1 160 ASN 160 183 183 ASN ASN B . n B 1 161 MLY 161 184 184 MLY MLY B . n B 1 162 VAL 162 185 185 VAL VAL B . n B 1 163 TYR 163 186 186 TYR TYR B . n B 1 164 LEU 164 187 187 LEU LEU B . n B 1 165 LEU 165 188 188 LEU LEU B . n B 1 166 ARG 166 189 189 ARG ARG B . n B 1 167 MSE 167 190 190 MSE MSE B . n B 1 168 MLY 168 191 191 MLY MLY B . n B 1 169 ASP 169 192 192 ASP ASP B . n B 1 170 ASP 170 193 193 ASP ASP B . n B 1 171 THR 171 194 194 THR THR B . n B 1 172 MSE 172 195 195 MSE MSE B . n B 1 173 ALA 173 196 196 ALA ALA B . n B 1 174 ALA 174 197 197 ALA ALA B . n B 1 175 ILE 175 198 198 ILE ILE B . n B 1 176 ARG 176 199 199 ARG ARG B . n B 1 177 LEU 177 200 200 LEU LEU B . n B 1 178 VAL 178 201 201 VAL VAL B . n B 1 179 SER 179 202 202 SER SER B . n B 1 180 TYR 180 203 203 TYR TYR B . n B 1 181 MSE 181 204 204 MSE MSE B . n B 1 182 ASN 182 205 205 ASN ASN B . n B 1 183 ALA 183 206 206 ALA ALA B . n B 1 184 ALA 184 207 207 ALA ALA B . n B 1 185 GLY 185 208 208 GLY GLY B . n B 1 186 ILE 186 209 209 ILE ILE B . n B 1 187 MLY 187 210 210 MLY MLY B . n B 1 188 GLY 188 211 211 GLY GLY B . n B 1 189 TYR 189 212 212 TYR TYR B . n B 1 190 MSE 190 213 213 MSE MSE B . n B 1 191 THR 191 214 214 THR THR B . n B 1 192 PHE 192 215 215 PHE PHE B . n B 1 193 ASP 193 216 216 ASP ASP B . n B 1 194 TYR 194 217 217 TYR TYR B . n B 1 195 ILE 195 218 218 ILE ILE B . n B 1 196 TYR 196 219 219 TYR TYR B . n B 1 197 PRO 197 220 220 PRO PRO B . n B 1 198 TYR 198 221 221 TYR TYR B . n B 1 199 GLU 199 222 222 GLU GLU B . n B 1 200 PRO 200 223 223 PRO PRO B . n # _pdbx_SG_project.project_name PSI:Biology _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 1 301 224 SO4 SO4 A . D 2 SO4 1 301 225 SO4 SO4 B . E 3 HOH 1 401 226 HOH HOH A . E 3 HOH 2 402 231 HOH HOH A . E 3 HOH 3 403 232 HOH HOH A . E 3 HOH 4 404 234 HOH HOH A . E 3 HOH 5 405 235 HOH HOH A . E 3 HOH 6 406 241 HOH HOH A . E 3 HOH 7 407 243 HOH HOH A . E 3 HOH 8 408 244 HOH HOH A . E 3 HOH 9 409 245 HOH HOH A . E 3 HOH 10 410 246 HOH HOH A . E 3 HOH 11 411 247 HOH HOH A . E 3 HOH 12 412 250 HOH HOH A . E 3 HOH 13 413 252 HOH HOH A . E 3 HOH 14 414 254 HOH HOH A . E 3 HOH 15 415 255 HOH HOH A . E 3 HOH 16 416 256 HOH HOH A . E 3 HOH 17 417 257 HOH HOH A . E 3 HOH 18 418 258 HOH HOH A . E 3 HOH 19 419 259 HOH HOH A . E 3 HOH 20 420 260 HOH HOH A . E 3 HOH 21 421 261 HOH HOH A . E 3 HOH 22 422 262 HOH HOH A . E 3 HOH 23 423 263 HOH HOH A . E 3 HOH 24 424 264 HOH HOH A . E 3 HOH 25 425 265 HOH HOH A . E 3 HOH 26 426 266 HOH HOH A . E 3 HOH 27 427 274 HOH HOH A . E 3 HOH 28 428 275 HOH HOH A . E 3 HOH 29 429 278 HOH HOH A . E 3 HOH 30 430 279 HOH HOH A . E 3 HOH 31 431 280 HOH HOH A . E 3 HOH 32 432 281 HOH HOH A . E 3 HOH 33 433 282 HOH HOH A . E 3 HOH 34 434 283 HOH HOH A . E 3 HOH 35 435 286 HOH HOH A . E 3 HOH 36 436 287 HOH HOH A . E 3 HOH 37 437 294 HOH HOH A . E 3 HOH 38 438 295 HOH HOH A . F 3 HOH 1 401 227 HOH HOH B . F 3 HOH 2 402 228 HOH HOH B . F 3 HOH 3 403 229 HOH HOH B . F 3 HOH 4 404 230 HOH HOH B . F 3 HOH 5 405 233 HOH HOH B . F 3 HOH 6 406 236 HOH HOH B . F 3 HOH 7 407 237 HOH HOH B . F 3 HOH 8 408 238 HOH HOH B . F 3 HOH 9 409 239 HOH HOH B . F 3 HOH 10 410 240 HOH HOH B . F 3 HOH 11 411 242 HOH HOH B . F 3 HOH 12 412 248 HOH HOH B . F 3 HOH 13 413 249 HOH HOH B . F 3 HOH 14 414 251 HOH HOH B . F 3 HOH 15 415 253 HOH HOH B . F 3 HOH 16 416 267 HOH HOH B . F 3 HOH 17 417 268 HOH HOH B . F 3 HOH 18 418 269 HOH HOH B . F 3 HOH 19 419 270 HOH HOH B . F 3 HOH 20 420 271 HOH HOH B . F 3 HOH 21 421 272 HOH HOH B . F 3 HOH 22 422 273 HOH HOH B . F 3 HOH 23 423 276 HOH HOH B . F 3 HOH 24 424 277 HOH HOH B . F 3 HOH 25 425 284 HOH HOH B . F 3 HOH 26 426 285 HOH HOH B . F 3 HOH 27 427 288 HOH HOH B . F 3 HOH 28 428 289 HOH HOH B . F 3 HOH 29 429 290 HOH HOH B . F 3 HOH 30 430 291 HOH HOH B . F 3 HOH 31 431 292 HOH HOH B . F 3 HOH 32 432 293 HOH HOH B . F 3 HOH 33 433 296 HOH HOH B . F 3 HOH 34 434 297 HOH HOH B . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MLY 16 A MLY 39 ? LYS N-DIMETHYL-LYSINE 2 A MLY 41 A MLY 64 ? LYS N-DIMETHYL-LYSINE 3 A MLY 56 A MLY 79 ? LYS N-DIMETHYL-LYSINE 4 A MLY 96 A MLY 119 ? LYS N-DIMETHYL-LYSINE 5 A MSE 101 A MSE 124 ? MET SELENOMETHIONINE 6 A MLY 115 A MLY 138 ? LYS N-DIMETHYL-LYSINE 7 A MSE 123 A MSE 146 ? MET SELENOMETHIONINE 8 A MLY 143 A MLY 166 ? LYS N-DIMETHYL-LYSINE 9 A MSE 152 A MSE 175 ? MET SELENOMETHIONINE 10 A MLY 161 A MLY 184 ? LYS N-DIMETHYL-LYSINE 11 A MSE 167 A MSE 190 ? MET SELENOMETHIONINE 12 A MLY 168 A MLY 191 ? LYS N-DIMETHYL-LYSINE 13 A MSE 172 A MSE 195 ? MET SELENOMETHIONINE 14 A MSE 181 A MSE 204 ? MET SELENOMETHIONINE 15 A MLY 187 A MLY 210 ? LYS N-DIMETHYL-LYSINE 16 A MSE 190 A MSE 213 ? MET SELENOMETHIONINE 17 B MLY 16 B MLY 39 ? LYS N-DIMETHYL-LYSINE 18 B MLY 41 B MLY 64 ? LYS N-DIMETHYL-LYSINE 19 B MLY 56 B MLY 79 ? LYS N-DIMETHYL-LYSINE 20 B MLY 96 B MLY 119 ? LYS N-DIMETHYL-LYSINE 21 B MSE 101 B MSE 124 ? MET SELENOMETHIONINE 22 B MLY 115 B MLY 138 ? LYS N-DIMETHYL-LYSINE 23 B MSE 123 B MSE 146 ? MET SELENOMETHIONINE 24 B MSE 124 B MSE 147 ? MET SELENOMETHIONINE 25 B MLY 143 B MLY 166 ? LYS N-DIMETHYL-LYSINE 26 B MSE 152 B MSE 175 ? MET SELENOMETHIONINE 27 B MLY 161 B MLY 184 ? LYS N-DIMETHYL-LYSINE 28 B MSE 167 B MSE 190 ? MET SELENOMETHIONINE 29 B MLY 168 B MLY 191 ? LYS N-DIMETHYL-LYSINE 30 B MSE 172 B MSE 195 ? MET SELENOMETHIONINE 31 B MSE 181 B MSE 204 ? MET SELENOMETHIONINE 32 B MLY 187 B MLY 210 ? LYS N-DIMETHYL-LYSINE 33 B MSE 190 B MSE 213 ? MET SELENOMETHIONINE # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA monomeric 1 2 author_and_software_defined_assembly PISA monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C,E 2 1 B,D,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-10-10 2 'Structure model' 1 1 2017-11-15 3 'Structure model' 1 2 2018-01-24 4 'Structure model' 1 3 2023-02-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Refinement description' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' software 2 3 'Structure model' citation_author 3 4 'Structure model' database_2 4 4 'Structure model' struct_conn 5 4 'Structure model' struct_ref_seq_dif 6 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_citation_author.name' 2 4 'Structure model' '_database_2.pdbx_DOI' 3 4 'Structure model' '_database_2.pdbx_database_accession' 4 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 5 4 'Structure model' '_struct_ref_seq_dif.details' 6 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 7 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 8 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 73.4182 99.4287 26.4875 -0.3116 -0.0265 -0.1324 -0.1059 -0.0358 -0.0890 6.7555 4.1018 3.6696 0.0926 2.1841 1.1800 0.0772 -0.3397 0.2625 -0.4843 0.6149 -0.1551 0.0732 0.2220 -0.4431 'X-RAY DIFFRACTION' 2 ? refined 111.4080 94.3640 10.2489 -0.1845 -0.0805 -0.2406 0.0047 -0.1575 -0.0466 4.4258 5.0144 6.5774 -2.4755 -3.5016 3.4944 0.2667 -0.3092 0.0425 0.4238 -0.2718 0.3241 -0.6655 -0.1569 -0.1330 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 35 A 223 '{ A|35 - 223 }' ? ? ? ? ? 'X-RAY DIFFRACTION' 2 2 B 38 B 223 '{ B|38 - 223 }' ? ? ? ? ? # _phasing.method MAD # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 2 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 3 SHELX . ? package 'George M. Sheldrick' gsheldr@shelx.uni-ac.gwdg.de phasing http://shelx.uni-ac.gwdg.de/SHELX/ Fortran_77 ? 4 SHARP . ? package 'Eric de La Fortelle' sharp-develop@globalphasing.com phasing http://www.globalphasing.com/sharp/ ? ? 5 XSCALE 'March 15, 2012' ? package 'Wolfgang Kabsch' ? 'data scaling' http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html ? ? 6 BUSTER-TNT 2.10.0 ? program 'Gerard Bricogne' buster-develop@GlobalPhasing.com refinement http://www.globalphasing.com/buster/ ? ? 7 XDS . ? ? ? ? 'data reduction' ? ? ? 8 SHELXD . ? ? ? ? phasing ? ? ? 9 BUSTER 2.10.0 ? ? ? ? refinement ? ? ? # _pdbx_entry_details.entry_id 4GBS _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;1. THE CONSTRUCT (RESIDUES 25-223) WAS EXPRESSED WITH AN N-TERMINAL PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. 2. THE PROTEIN WAS REDUCTIVELY METHYLATED PRIOR TO CRYSTALLIZATION. ; _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ARG A 97 ? ? 53.20 -120.51 2 1 ASN A 103 ? ? -102.62 76.86 3 1 ARG B 97 ? ? 52.64 -119.33 4 1 ASN B 103 ? ? -102.59 76.45 5 1 MLY B 138 ? ? -120.22 -50.26 6 1 MLY B 138 ? ? -120.28 -50.73 7 1 ASP B 149 ? ? -71.98 -108.65 8 1 ASN B 150 ? ? -95.95 52.99 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A MLY 39 ? CG ? A MLY 16 CG 2 1 Y 1 A MLY 39 ? CD ? A MLY 16 CD 3 1 Y 1 A MLY 39 ? CE ? A MLY 16 CE 4 1 Y 1 A MLY 39 ? NZ ? A MLY 16 NZ 5 1 Y 1 A MLY 39 ? CH1 ? A MLY 16 CH1 6 1 Y 1 A MLY 39 ? CH2 ? A MLY 16 CH2 7 1 Y 1 A MLY 79 ? CG ? A MLY 56 CG 8 1 Y 1 A MLY 79 ? CD ? A MLY 56 CD 9 1 Y 1 A MLY 79 ? CE ? A MLY 56 CE 10 1 Y 1 A MLY 79 ? NZ ? A MLY 56 NZ 11 1 Y 1 A MLY 79 ? CH1 ? A MLY 56 CH1 12 1 Y 1 A MLY 79 ? CH2 ? A MLY 56 CH2 13 1 Y 1 A MLY 119 ? NZ ? A MLY 96 NZ 14 1 Y 1 A MLY 119 ? CH1 ? A MLY 96 CH1 15 1 Y 1 A MLY 119 ? CH2 ? A MLY 96 CH2 16 1 Y 1 A SER 144 ? OG ? A SER 121 OG 17 1 Y 1 A MSE 146 ? CG ? A MSE 123 CG 18 1 Y 1 A MSE 146 ? SE ? A MSE 123 SE 19 1 Y 1 A MSE 146 ? CE ? A MSE 123 CE 20 1 Y 1 A TYR 152 ? CG ? A TYR 129 CG 21 1 Y 1 A TYR 152 ? CD1 ? A TYR 129 CD1 22 1 Y 1 A TYR 152 ? CD2 ? A TYR 129 CD2 23 1 Y 1 A TYR 152 ? CE1 ? A TYR 129 CE1 24 1 Y 1 A TYR 152 ? CE2 ? A TYR 129 CE2 25 1 Y 1 A TYR 152 ? CZ ? A TYR 129 CZ 26 1 Y 1 A TYR 152 ? OH ? A TYR 129 OH 27 1 Y 1 B MLY 39 ? CG ? B MLY 16 CG 28 1 Y 1 B MLY 39 ? CD ? B MLY 16 CD 29 1 Y 1 B MLY 39 ? CE ? B MLY 16 CE 30 1 Y 1 B MLY 39 ? NZ ? B MLY 16 NZ 31 1 Y 1 B MLY 39 ? CH1 ? B MLY 16 CH1 32 1 Y 1 B MLY 39 ? CH2 ? B MLY 16 CH2 33 1 Y 1 B ASP 40 ? CG ? B ASP 17 CG 34 1 Y 1 B ASP 40 ? OD1 ? B ASP 17 OD1 35 1 Y 1 B ASP 40 ? OD2 ? B ASP 17 OD2 36 1 Y 1 B MLY 119 ? CH1 ? B MLY 96 CH1 37 1 Y 1 B MLY 119 ? CH2 ? B MLY 96 CH2 38 1 Y 1 B GLU 148 ? CG ? B GLU 125 CG 39 1 Y 1 B GLU 148 ? CD ? B GLU 125 CD 40 1 Y 1 B GLU 148 ? OE1 ? B GLU 125 OE1 41 1 Y 1 B GLU 148 ? OE2 ? B GLU 125 OE2 42 1 Y 1 B ASP 149 ? CG ? B ASP 126 CG 43 1 Y 1 B ASP 149 ? OD1 ? B ASP 126 OD1 44 1 Y 1 B ASP 149 ? OD2 ? B ASP 126 OD2 45 1 Y 1 B GLU 174 ? CG ? B GLU 151 CG 46 1 Y 1 B GLU 174 ? CD ? B GLU 151 CD 47 1 Y 1 B GLU 174 ? OE1 ? B GLU 151 OE1 48 1 Y 1 B GLU 174 ? OE2 ? B GLU 151 OE2 49 1 Y 1 B MSE 175 ? CG ? B MSE 152 CG 50 1 Y 1 B MSE 175 ? SE ? B MSE 152 SE 51 1 Y 1 B MSE 175 ? CE ? B MSE 152 CE # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 0 ? A GLY 1 2 1 Y 1 A ASN 25 ? A ASN 2 3 1 Y 1 A GLY 26 ? A GLY 3 4 1 Y 1 A ILE 27 ? A ILE 4 5 1 Y 1 A LEU 28 ? A LEU 5 6 1 Y 1 A SER 29 ? A SER 6 7 1 Y 1 A SER 30 ? A SER 7 8 1 Y 1 A LEU 31 ? A LEU 8 9 1 Y 1 A TYR 32 ? A TYR 9 10 1 Y 1 A ASP 33 ? A ASP 10 11 1 Y 1 A GLU 34 ? A GLU 11 12 1 Y 1 A MSE 147 ? A MSE 124 13 1 Y 1 A GLU 148 ? A GLU 125 14 1 Y 1 A ASP 149 ? A ASP 126 15 1 Y 1 A ASN 150 ? A ASN 127 16 1 Y 1 B GLY 0 ? B GLY 1 17 1 Y 1 B ASN 25 ? B ASN 2 18 1 Y 1 B GLY 26 ? B GLY 3 19 1 Y 1 B ILE 27 ? B ILE 4 20 1 Y 1 B LEU 28 ? B LEU 5 21 1 Y 1 B SER 29 ? B SER 6 22 1 Y 1 B SER 30 ? B SER 7 23 1 Y 1 B LEU 31 ? B LEU 8 24 1 Y 1 B TYR 32 ? B TYR 9 25 1 Y 1 B ASP 33 ? B ASP 10 26 1 Y 1 B GLU 34 ? B GLU 11 27 1 Y 1 B PRO 35 ? B PRO 12 28 1 Y 1 B GLU 36 ? B GLU 13 29 1 Y 1 B THR 37 ? B THR 14 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SULFATE ION' SO4 3 water HOH #