data_4GC6 # _entry.id 4GC6 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4GC6 pdb_00004gc6 10.2210/pdb4gc6/pdb NDB NA1960 ? ? RCSB RCSB074000 ? ? WWPDB D_1000074000 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2AGQ . unspecified PDB 3PR5 . unspecified PDB 2J6S . unspecified PDB 3T5J . unspecified PDB 4GC7 . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4GC6 _pdbx_database_status.recvd_initial_deposition_date 2012-07-29 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Eoff, R.L.' 1 'Ketkar, A.' 2 'Banerjee, S.' 3 'Zafar, M.K.' 4 # _citation.id primary _citation.title 'Differential furanose selection in the active sites of archaeal DNA polymerases probed by fixed-conformation nucleotide analogues.' _citation.journal_abbrev Biochemistry _citation.journal_volume 51 _citation.page_first 9234 _citation.page_last 9244 _citation.year 2012 _citation.journal_id_ASTM BICHAW _citation.country US _citation.journal_id_ISSN 0006-2960 _citation.journal_id_CSD 0033 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23050956 _citation.pdbx_database_id_DOI 10.1021/bi301043k # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Ketkar, A.' 1 ? primary 'Zafar, M.K.' 2 ? primary 'Banerjee, S.' 3 ? primary 'Marquez, V.E.' 4 ? primary 'Egli, M.' 5 ? primary 'Eoff, R.L.' 6 ? # _cell.entry_id 4GC6 _cell.length_a 93.641 _cell.length_b 103.357 _cell.length_c 52.491 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4GC6 _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'DNA polymerase IV' 41086.754 1 2.7.7.7 ? ? ? 2 polymer syn ;DNA (5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*TP*TP*CP*C)-3') ; 4385.852 1 ? ? ? 'primer DNA' 3 polymer syn ;DNA (5'-D(*TP*CP*AP*TP*GP*GP*AP*AP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3') ; 5387.492 1 ? ? ? 'template DNA' 4 non-polymer syn ;North-methanocarba-2'-deoxyadenosine triphosphate ; 501.220 1 ? ? ? ? 5 non-polymer syn 'CALCIUM ION' 40.078 4 ? ? ? ? 6 water nat water 18.015 45 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Pol IV' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;HHHHHHMIVLFVDFDYFYAQVEEVLNPSLKGKPVVVCVFSGRFEDSGAVATANYEARKFGVKAGIPIVEAKKILPNAVYL PMRKEVYQQVSSRIMNLLREYSEKIEIASIDEAYLDISDKVRDYREAYNLGLEIKNKILEKEKITVTVGISKNKVFAKIA ADMAKPNGIKVIDDEEVKRLIRELDIADVPGIGNITAEKLKKLGINKLVDTLSIEFDKLKGMIGEAKAKYLISLARDEYN EPIRTRVRKSIGRIVTMKRNSRNLEEIKPYLFRAIEESYYKLDKRIPKAIHVVAVTEDLDIVSRGRTFPHGISKETAYSE SVKLLQKILEEDERKIRRIGVRFSKFIEAIGLDKFFDT ; ;HHHHHHMIVLFVDFDYFYAQVEEVLNPSLKGKPVVVCVFSGRFEDSGAVATANYEARKFGVKAGIPIVEAKKILPNAVYL PMRKEVYQQVSSRIMNLLREYSEKIEIASIDEAYLDISDKVRDYREAYNLGLEIKNKILEKEKITVTVGISKNKVFAKIA ADMAKPNGIKVIDDEEVKRLIRELDIADVPGIGNITAEKLKKLGINKLVDTLSIEFDKLKGMIGEAKAKYLISLARDEYN EPIRTRVRKSIGRIVTMKRNSRNLEEIKPYLFRAIEESYYKLDKRIPKAIHVVAVTEDLDIVSRGRTFPHGISKETAYSE SVKLLQKILEEDERKIRRIGVRFSKFIEAIGLDKFFDT ; A ? 2 polydeoxyribonucleotide no no '(DG)(DG)(DG)(DG)(DG)(DA)(DA)(DG)(DG)(DA)(DT)(DT)(DC)(DC)' GGGGGAAGGATTCC P ? 3 polydeoxyribonucleotide no no '(DT)(DC)(DA)(DT)(DG)(DG)(DA)(DA)(DT)(DC)(DC)(DT)(DT)(DC)(DC)(DC)(DC)(DC)' TCATGGAATCCTTCCCCC T ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 HIS n 1 2 HIS n 1 3 HIS n 1 4 HIS n 1 5 HIS n 1 6 HIS n 1 7 MET n 1 8 ILE n 1 9 VAL n 1 10 LEU n 1 11 PHE n 1 12 VAL n 1 13 ASP n 1 14 PHE n 1 15 ASP n 1 16 TYR n 1 17 PHE n 1 18 TYR n 1 19 ALA n 1 20 GLN n 1 21 VAL n 1 22 GLU n 1 23 GLU n 1 24 VAL n 1 25 LEU n 1 26 ASN n 1 27 PRO n 1 28 SER n 1 29 LEU n 1 30 LYS n 1 31 GLY n 1 32 LYS n 1 33 PRO n 1 34 VAL n 1 35 VAL n 1 36 VAL n 1 37 CYS n 1 38 VAL n 1 39 PHE n 1 40 SER n 1 41 GLY n 1 42 ARG n 1 43 PHE n 1 44 GLU n 1 45 ASP n 1 46 SER n 1 47 GLY n 1 48 ALA n 1 49 VAL n 1 50 ALA n 1 51 THR n 1 52 ALA n 1 53 ASN n 1 54 TYR n 1 55 GLU n 1 56 ALA n 1 57 ARG n 1 58 LYS n 1 59 PHE n 1 60 GLY n 1 61 VAL n 1 62 LYS n 1 63 ALA n 1 64 GLY n 1 65 ILE n 1 66 PRO n 1 67 ILE n 1 68 VAL n 1 69 GLU n 1 70 ALA n 1 71 LYS n 1 72 LYS n 1 73 ILE n 1 74 LEU n 1 75 PRO n 1 76 ASN n 1 77 ALA n 1 78 VAL n 1 79 TYR n 1 80 LEU n 1 81 PRO n 1 82 MET n 1 83 ARG n 1 84 LYS n 1 85 GLU n 1 86 VAL n 1 87 TYR n 1 88 GLN n 1 89 GLN n 1 90 VAL n 1 91 SER n 1 92 SER n 1 93 ARG n 1 94 ILE n 1 95 MET n 1 96 ASN n 1 97 LEU n 1 98 LEU n 1 99 ARG n 1 100 GLU n 1 101 TYR n 1 102 SER n 1 103 GLU n 1 104 LYS n 1 105 ILE n 1 106 GLU n 1 107 ILE n 1 108 ALA n 1 109 SER n 1 110 ILE n 1 111 ASP n 1 112 GLU n 1 113 ALA n 1 114 TYR n 1 115 LEU n 1 116 ASP n 1 117 ILE n 1 118 SER n 1 119 ASP n 1 120 LYS n 1 121 VAL n 1 122 ARG n 1 123 ASP n 1 124 TYR n 1 125 ARG n 1 126 GLU n 1 127 ALA n 1 128 TYR n 1 129 ASN n 1 130 LEU n 1 131 GLY n 1 132 LEU n 1 133 GLU n 1 134 ILE n 1 135 LYS n 1 136 ASN n 1 137 LYS n 1 138 ILE n 1 139 LEU n 1 140 GLU n 1 141 LYS n 1 142 GLU n 1 143 LYS n 1 144 ILE n 1 145 THR n 1 146 VAL n 1 147 THR n 1 148 VAL n 1 149 GLY n 1 150 ILE n 1 151 SER n 1 152 LYS n 1 153 ASN n 1 154 LYS n 1 155 VAL n 1 156 PHE n 1 157 ALA n 1 158 LYS n 1 159 ILE n 1 160 ALA n 1 161 ALA n 1 162 ASP n 1 163 MET n 1 164 ALA n 1 165 LYS n 1 166 PRO n 1 167 ASN n 1 168 GLY n 1 169 ILE n 1 170 LYS n 1 171 VAL n 1 172 ILE n 1 173 ASP n 1 174 ASP n 1 175 GLU n 1 176 GLU n 1 177 VAL n 1 178 LYS n 1 179 ARG n 1 180 LEU n 1 181 ILE n 1 182 ARG n 1 183 GLU n 1 184 LEU n 1 185 ASP n 1 186 ILE n 1 187 ALA n 1 188 ASP n 1 189 VAL n 1 190 PRO n 1 191 GLY n 1 192 ILE n 1 193 GLY n 1 194 ASN n 1 195 ILE n 1 196 THR n 1 197 ALA n 1 198 GLU n 1 199 LYS n 1 200 LEU n 1 201 LYS n 1 202 LYS n 1 203 LEU n 1 204 GLY n 1 205 ILE n 1 206 ASN n 1 207 LYS n 1 208 LEU n 1 209 VAL n 1 210 ASP n 1 211 THR n 1 212 LEU n 1 213 SER n 1 214 ILE n 1 215 GLU n 1 216 PHE n 1 217 ASP n 1 218 LYS n 1 219 LEU n 1 220 LYS n 1 221 GLY n 1 222 MET n 1 223 ILE n 1 224 GLY n 1 225 GLU n 1 226 ALA n 1 227 LYS n 1 228 ALA n 1 229 LYS n 1 230 TYR n 1 231 LEU n 1 232 ILE n 1 233 SER n 1 234 LEU n 1 235 ALA n 1 236 ARG n 1 237 ASP n 1 238 GLU n 1 239 TYR n 1 240 ASN n 1 241 GLU n 1 242 PRO n 1 243 ILE n 1 244 ARG n 1 245 THR n 1 246 ARG n 1 247 VAL n 1 248 ARG n 1 249 LYS n 1 250 SER n 1 251 ILE n 1 252 GLY n 1 253 ARG n 1 254 ILE n 1 255 VAL n 1 256 THR n 1 257 MET n 1 258 LYS n 1 259 ARG n 1 260 ASN n 1 261 SER n 1 262 ARG n 1 263 ASN n 1 264 LEU n 1 265 GLU n 1 266 GLU n 1 267 ILE n 1 268 LYS n 1 269 PRO n 1 270 TYR n 1 271 LEU n 1 272 PHE n 1 273 ARG n 1 274 ALA n 1 275 ILE n 1 276 GLU n 1 277 GLU n 1 278 SER n 1 279 TYR n 1 280 TYR n 1 281 LYS n 1 282 LEU n 1 283 ASP n 1 284 LYS n 1 285 ARG n 1 286 ILE n 1 287 PRO n 1 288 LYS n 1 289 ALA n 1 290 ILE n 1 291 HIS n 1 292 VAL n 1 293 VAL n 1 294 ALA n 1 295 VAL n 1 296 THR n 1 297 GLU n 1 298 ASP n 1 299 LEU n 1 300 ASP n 1 301 ILE n 1 302 VAL n 1 303 SER n 1 304 ARG n 1 305 GLY n 1 306 ARG n 1 307 THR n 1 308 PHE n 1 309 PRO n 1 310 HIS n 1 311 GLY n 1 312 ILE n 1 313 SER n 1 314 LYS n 1 315 GLU n 1 316 THR n 1 317 ALA n 1 318 TYR n 1 319 SER n 1 320 GLU n 1 321 SER n 1 322 VAL n 1 323 LYS n 1 324 LEU n 1 325 LEU n 1 326 GLN n 1 327 LYS n 1 328 ILE n 1 329 LEU n 1 330 GLU n 1 331 GLU n 1 332 ASP n 1 333 GLU n 1 334 ARG n 1 335 LYS n 1 336 ILE n 1 337 ARG n 1 338 ARG n 1 339 ILE n 1 340 GLY n 1 341 VAL n 1 342 ARG n 1 343 PHE n 1 344 SER n 1 345 LYS n 1 346 PHE n 1 347 ILE n 1 348 GLU n 1 349 ALA n 1 350 ILE n 1 351 GLY n 1 352 LEU n 1 353 ASP n 1 354 LYS n 1 355 PHE n 1 356 PHE n 1 357 ASP n 1 358 THR n 2 1 DG n 2 2 DG n 2 3 DG n 2 4 DG n 2 5 DG n 2 6 DA n 2 7 DA n 2 8 DG n 2 9 DG n 2 10 DA n 2 11 DT n 2 12 DT n 2 13 DC n 2 14 DC n 3 1 DT n 3 2 DC n 3 3 DA n 3 4 DT n 3 5 DG n 3 6 DG n 3 7 DA n 3 8 DA n 3 9 DT n 3 10 DC n 3 11 DC n 3 12 DT n 3 13 DT n 3 14 DC n 3 15 DC n 3 16 DC n 3 17 DC n 3 18 DC n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'dbh, dpo4, SSO2448' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain P2 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Sulfolobus solfataricus P2' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 273057 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21 (DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name 'pET22b(+)' _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 2 1 sample ? ? ? ? ? 'chemically synthesized oligonucleotide' 3 1 sample ? ? ? ? ? 'chemically synthesized oligonucleotide' # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP DPO4_SULSO Q97W02 1 ;MIVLFVDFDYFYAQVEEVLNPSLKGKPVVVCVFSGRFEDSGAVATANYEARKFGVKAGIPIVEAKKILPNAVYLPMRKEV YQQVSSRIMNLLREYSEKIEIASIDEAYLDISDKVRDYREAYNLGLEIKNKILEKEKITVTVGISKNKVFAKIAADMAKP NGIKVIDDEEVKRLIRELDIADVPGIGNITAEKLKKLGINKLVDTLSIEFDKLKGMIGEAKAKYLISLARDEYNEPIRTR VRKSIGRIVTMKRNSRNLEEIKPYLFRAIEESYYKLDKRIPKAIHVVAVTEDLDIVSRGRTFPHGISKETAYSESVKLLQ KILEEDERKIRRIGVRFSKFIEAIGLDKFFDT ; 1 ? 2 PDB 4GC6 4GC6 2 GGGGGAAGGATTCC ? ? 3 PDB 4GC6 4GC6 3 TCATGGAATCCTTCCCCC ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4GC6 A 7 ? 358 ? Q97W02 1 ? 352 ? 1 352 2 2 4GC6 P 1 ? 14 ? 4GC6 1 ? 14 ? 1 14 3 3 4GC6 T 1 ? 18 ? 4GC6 1 ? 18 ? 1 18 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4GC6 HIS A 1 ? UNP Q97W02 ? ? 'expression tag' -5 1 1 4GC6 HIS A 2 ? UNP Q97W02 ? ? 'expression tag' -4 2 1 4GC6 HIS A 3 ? UNP Q97W02 ? ? 'expression tag' -3 3 1 4GC6 HIS A 4 ? UNP Q97W02 ? ? 'expression tag' -2 4 1 4GC6 HIS A 5 ? UNP Q97W02 ? ? 'expression tag' -1 5 1 4GC6 HIS A 6 ? UNP Q97W02 ? ? 'expression tag' 0 6 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 0OH non-polymer . ;North-methanocarba-2'-deoxyadenosine triphosphate ; ? 'C12 H18 N5 O11 P3' 501.220 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4GC6 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.50 _exptl_crystal.density_percent_sol 50.74 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.0 _exptl_crystal_grow.pdbx_details ;20 mM Tris HCl (pH 8.0), 15% PEG3350, 60 mM NaCl, 5 mM magnesium chloride, 4% glycerol, VAPOR DIFFUSION, SITTING DROP, temperature 298K ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 110 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2011-10-06 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si(220) Side bounce' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.979 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 24-ID-E' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 24-ID-E _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.979 # _reflns.entry_id 4GC6 _reflns.observed_criterion_sigma_I 1.0 _reflns.observed_criterion_sigma_F 1.0 _reflns.d_resolution_low 50.0 _reflns.d_resolution_high 2.895 _reflns.number_obs 11628 _reflns.number_all 11891 _reflns.percent_possible_obs 98 _reflns.pdbx_Rmerge_I_obs 0.088 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 9.3 _reflns.B_iso_Wilson_estimate 75.1 _reflns.pdbx_redundancy 3.6 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.90 _reflns_shell.d_res_low 3.0 _reflns_shell.percent_possible_all 84.2 _reflns_shell.Rmerge_I_obs 0.704 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 1.9 _reflns_shell.pdbx_redundancy 3.5 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1130 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 4GC6 _refine.ls_number_reflns_obs 11623 _refine.ls_number_reflns_all 11623 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.35 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 45.788 _refine.ls_d_res_high 2.895 _refine.ls_percent_reflns_obs 97.79 _refine.ls_R_factor_obs 0.2062 _refine.ls_R_factor_all 0.2062 _refine.ls_R_factor_R_work 0.2023 _refine.ls_R_factor_R_free 0.2758 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.01 _refine.ls_number_reflns_R_free 582 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] 2.0559 _refine.aniso_B[2][2] 4.0036 _refine.aniso_B[3][3] -4.9965 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] -0.0000 _refine.aniso_B[2][3] 0.0000 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.316 _refine.solvent_model_param_bsol 47.457 _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.98 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model 2J6S _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.44 _refine.pdbx_overall_phase_error 28.46 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2744 _refine_hist.pdbx_number_atoms_nucleic_acid 612 _refine_hist.pdbx_number_atoms_ligand 27 _refine_hist.number_atoms_solvent 45 _refine_hist.number_atoms_total 3428 _refine_hist.d_res_high 2.895 _refine_hist.d_res_low 45.788 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id f_bond_d 0.008 ? ? 3546 ? 'X-RAY DIFFRACTION' f_angle_d 1.308 ? ? 4910 ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 20.560 ? ? 1420 ? 'X-RAY DIFFRACTION' f_chiral_restr 0.074 ? ? 556 ? 'X-RAY DIFFRACTION' f_plane_restr 0.005 ? ? 519 ? 'X-RAY DIFFRACTION' # loop_ _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id . 2.8950 3.1862 2678 0.2713 97.00 0.3871 . . 141 . . . . 'X-RAY DIFFRACTION' . 3.1862 3.6471 2737 0.2084 99.00 0.3056 . . 144 . . . . 'X-RAY DIFFRACTION' . 3.6471 4.5943 2771 0.1887 99.00 0.3088 . . 146 . . . . 'X-RAY DIFFRACTION' . 4.5943 45.7936 2855 0.1967 97.00 0.2309 . . 151 . . . . 'X-RAY DIFFRACTION' # _struct.entry_id 4GC6 _struct.title 'Crystal structure of Dpo4 in complex with N-MC-dAMP opposite dT' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4GC6 _struct_keywords.pdbx_keywords TRANSFERASE/DNA _struct_keywords.text 'DNA polymerase, TRANSFERASE-DNA complex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 5 ? G N N 5 ? H N N 5 ? I N N 6 ? J N N 6 ? K N N 6 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 TYR A 16 ? LEU A 25 ? TYR A 10 LEU A 19 1 ? 10 HELX_P HELX_P2 2 ASN A 26 ? LYS A 30 ? ASN A 20 LYS A 24 5 ? 5 HELX_P HELX_P3 3 ASN A 53 ? LYS A 58 ? ASN A 47 LYS A 52 1 ? 6 HELX_P HELX_P4 4 PRO A 66 ? LEU A 74 ? PRO A 60 LEU A 68 1 ? 9 HELX_P HELX_P5 5 ARG A 83 ? ARG A 99 ? ARG A 77 ARG A 93 1 ? 17 HELX_P HELX_P6 6 SER A 118 ? VAL A 121 ? SER A 112 VAL A 115 5 ? 4 HELX_P HELX_P7 7 ARG A 122 ? GLU A 142 ? ARG A 116 GLU A 136 1 ? 21 HELX_P HELX_P8 8 ASN A 153 ? LYS A 165 ? ASN A 147 LYS A 159 1 ? 13 HELX_P HELX_P9 9 ASP A 173 ? LEU A 184 ? ASP A 167 LEU A 178 1 ? 12 HELX_P HELX_P10 10 ASP A 185 ? VAL A 189 ? ASP A 179 VAL A 183 5 ? 5 HELX_P HELX_P11 11 GLY A 193 ? LEU A 203 ? GLY A 187 LEU A 197 1 ? 11 HELX_P HELX_P12 12 LYS A 207 ? SER A 213 ? LYS A 201 SER A 207 5 ? 7 HELX_P HELX_P13 13 GLU A 215 ? ARG A 236 ? GLU A 209 ARG A 230 1 ? 22 HELX_P HELX_P14 14 ASN A 263 ? LEU A 282 ? ASN A 257 LEU A 276 1 ? 20 HELX_P HELX_P15 15 SER A 313 ? ASP A 332 ? SER A 307 ASP A 326 1 ? 20 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A ASP 13 OD1 ? ? ? 1_555 E CA . CA ? ? A ASP 7 A CA 402 1_555 ? ? ? ? ? ? ? 3.040 ? ? metalc2 metalc ? ? A ASP 13 OD2 ? ? ? 1_555 F CA . CA ? ? A ASP 7 A CA 403 1_555 ? ? ? ? ? ? ? 2.964 ? ? metalc3 metalc ? ? A PHE 14 O ? ? ? 1_555 E CA . CA ? ? A PHE 8 A CA 402 1_555 ? ? ? ? ? ? ? 2.688 ? ? metalc4 metalc ? ? A ASP 111 OD2 ? ? ? 1_555 E CA . CA ? ? A ASP 105 A CA 402 1_555 ? ? ? ? ? ? ? 2.933 ? ? metalc5 metalc ? ? A ALA 187 O ? ? ? 1_555 G CA . CA ? ? A ALA 181 A CA 404 1_555 ? ? ? ? ? ? ? 3.016 ? ? metalc6 metalc ? ? A ILE 192 O ? ? ? 1_555 G CA . CA ? ? A ILE 186 A CA 404 1_555 ? ? ? ? ? ? ? 3.050 ? ? metalc7 metalc ? ? A ASP 300 OD2 ? ? ? 1_555 H CA . CA ? ? A ASP 294 A CA 405 1_555 ? ? ? ? ? ? ? 3.082 ? ? metalc8 metalc ? ? D 0OH . OAH ? ? ? 1_555 E CA . CA ? ? A 0OH 401 A CA 402 1_555 ? ? ? ? ? ? ? 2.933 ? ? metalc9 metalc ? ? G CA . CA ? ? ? 1_555 I HOH . O ? ? A CA 404 A HOH 512 1_555 ? ? ? ? ? ? ? 3.051 ? ? metalc10 metalc ? ? G CA . CA ? ? ? 1_555 I HOH . O ? ? A CA 404 A HOH 513 1_555 ? ? ? ? ? ? ? 2.834 ? ? metalc11 metalc ? ? G CA . CA ? ? ? 1_555 I HOH . O ? ? A CA 404 A HOH 514 1_555 ? ? ? ? ? ? ? 3.129 ? ? metalc12 metalc ? ? H CA . CA ? ? ? 1_555 I HOH . O ? ? A CA 405 A HOH 529 1_555 ? ? ? ? ? ? ? 2.594 ? ? metalc13 metalc ? ? H CA . CA ? ? ? 1_555 I HOH . O ? ? A CA 405 A HOH 530 1_555 ? ? ? ? ? ? ? 3.049 ? ? metalc14 metalc ? ? H CA . CA ? ? ? 1_555 B DA 10 OP2 ? ? A CA 405 P DA 10 1_555 ? ? ? ? ? ? ? 3.165 ? ? hydrog1 hydrog ? ? B DG 1 N1 ? ? ? 1_555 C DC 18 N3 ? ? P DG 1 T DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? B DG 1 N2 ? ? ? 1_555 C DC 18 O2 ? ? P DG 1 T DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? B DG 1 O6 ? ? ? 1_555 C DC 18 N4 ? ? P DG 1 T DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? B DG 2 N1 ? ? ? 1_555 C DC 17 N3 ? ? P DG 2 T DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? B DG 2 N2 ? ? ? 1_555 C DC 17 O2 ? ? P DG 2 T DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? B DG 2 O6 ? ? ? 1_555 C DC 17 N4 ? ? P DG 2 T DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? B DG 3 N1 ? ? ? 1_555 C DC 16 N3 ? ? P DG 3 T DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? B DG 3 N2 ? ? ? 1_555 C DC 16 O2 ? ? P DG 3 T DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? B DG 3 O6 ? ? ? 1_555 C DC 16 N4 ? ? P DG 3 T DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? B DG 4 N1 ? ? ? 1_555 C DC 15 N3 ? ? P DG 4 T DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? B DG 4 N2 ? ? ? 1_555 C DC 15 O2 ? ? P DG 4 T DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? B DG 4 O6 ? ? ? 1_555 C DC 15 N4 ? ? P DG 4 T DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? B DG 5 N1 ? ? ? 1_555 C DC 14 N3 ? ? P DG 5 T DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? B DG 5 N2 ? ? ? 1_555 C DC 14 O2 ? ? P DG 5 T DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? B DG 5 O6 ? ? ? 1_555 C DC 14 N4 ? ? P DG 5 T DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? B DA 6 N1 ? ? ? 1_555 C DT 13 N3 ? ? P DA 6 T DT 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? B DA 6 N6 ? ? ? 1_555 C DT 13 O4 ? ? P DA 6 T DT 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? B DA 7 N1 ? ? ? 1_555 C DT 12 N3 ? ? P DA 7 T DT 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? B DA 7 N6 ? ? ? 1_555 C DT 12 O4 ? ? P DA 7 T DT 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? B DG 8 N1 ? ? ? 1_555 C DC 11 N3 ? ? P DG 8 T DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? B DG 8 N2 ? ? ? 1_555 C DC 11 O2 ? ? P DG 8 T DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? B DG 8 O6 ? ? ? 1_555 C DC 11 N4 ? ? P DG 8 T DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? B DG 9 N1 ? ? ? 1_555 C DC 10 N3 ? ? P DG 9 T DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? B DG 9 N2 ? ? ? 1_555 C DC 10 O2 ? ? P DG 9 T DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? B DG 9 O6 ? ? ? 1_555 C DC 10 N4 ? ? P DG 9 T DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? B DA 10 N1 ? ? ? 1_555 C DT 9 N3 ? ? P DA 10 T DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? B DA 10 N6 ? ? ? 1_555 C DT 9 O4 ? ? P DA 10 T DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? B DT 11 N3 ? ? ? 1_555 C DA 8 N1 ? ? P DT 11 T DA 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? B DT 11 O4 ? ? ? 1_555 C DA 8 N6 ? ? P DT 11 T DA 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? B DT 12 N3 ? ? ? 1_555 C DA 7 N1 ? ? P DT 12 T DA 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? B DT 12 O4 ? ? ? 1_555 C DA 7 N6 ? ? P DT 12 T DA 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? B DC 13 N3 ? ? ? 1_555 C DG 6 N1 ? ? P DC 13 T DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? B DC 13 N4 ? ? ? 1_555 C DG 6 O6 ? ? P DC 13 T DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? B DC 13 O2 ? ? ? 1_555 C DG 6 N2 ? ? P DC 13 T DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? B DC 14 N3 ? ? ? 1_555 C DG 5 N1 ? ? P DC 14 T DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? B DC 14 N4 ? ? ? 1_555 C DG 5 O6 ? ? P DC 14 T DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? B DC 14 O2 ? ? ? 1_555 C DG 5 N2 ? ? P DC 14 T DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id LYS _struct_mon_prot_cis.label_seq_id 165 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id LYS _struct_mon_prot_cis.auth_seq_id 159 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 166 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 160 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -9.16 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 3 ? C ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? parallel B 1 2 ? anti-parallel B 2 3 ? parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 105 ? SER A 109 ? ILE A 99 SER A 103 A 2 GLU A 112 ? ASP A 116 ? GLU A 106 ASP A 110 A 3 VAL A 9 ? PHE A 14 ? VAL A 3 PHE A 8 A 4 VAL A 146 ? SER A 151 ? VAL A 140 SER A 145 A 5 ILE A 169 ? VAL A 171 ? ILE A 163 VAL A 165 B 1 GLY A 47 ? ALA A 52 ? GLY A 41 ALA A 46 B 2 VAL A 34 ? PHE A 39 ? VAL A 28 PHE A 33 B 3 VAL A 78 ? PRO A 81 ? VAL A 72 PRO A 75 C 1 SER A 250 ? SER A 261 ? SER A 244 SER A 255 C 2 ILE A 336 ? ILE A 347 ? ILE A 330 ILE A 341 C 3 ILE A 286 ? THR A 296 ? ILE A 280 THR A 290 C 4 ILE A 301 ? THR A 307 ? ILE A 295 THR A 301 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N GLU A 106 ? N GLU A 100 O TYR A 114 ? O TYR A 108 A 2 3 O LEU A 115 ? O LEU A 109 N LEU A 10 ? N LEU A 4 A 3 4 N VAL A 9 ? N VAL A 3 O SER A 151 ? O SER A 145 A 4 5 N ILE A 150 ? N ILE A 144 O LYS A 170 ? O LYS A 164 B 1 2 O ALA A 50 ? O ALA A 44 N VAL A 36 ? N VAL A 30 B 2 3 N CYS A 37 ? N CYS A 31 O LEU A 80 ? O LEU A 74 C 1 2 N SER A 261 ? N SER A 255 O ILE A 336 ? O ILE A 330 C 2 3 O ARG A 337 ? O ARG A 331 N VAL A 295 ? N VAL A 289 C 3 4 N VAL A 292 ? N VAL A 286 O ARG A 304 ? O ARG A 298 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A 0OH 401 ? 14 'BINDING SITE FOR RESIDUE 0OH A 401' AC2 Software A CA 402 ? 4 'BINDING SITE FOR RESIDUE CA A 402' AC3 Software A CA 403 ? 4 'BINDING SITE FOR RESIDUE CA A 403' AC4 Software A CA 404 ? 5 'BINDING SITE FOR RESIDUE CA A 404' AC5 Software A CA 405 ? 4 'BINDING SITE FOR RESIDUE CA A 405' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 14 TYR A 16 ? TYR A 10 . ? 1_555 ? 2 AC1 14 PHE A 17 ? PHE A 11 . ? 1_555 ? 3 AC1 14 TYR A 18 ? TYR A 12 . ? 1_555 ? 4 AC1 14 ALA A 50 ? ALA A 44 . ? 1_555 ? 5 AC1 14 THR A 51 ? THR A 45 . ? 1_555 ? 6 AC1 14 ARG A 57 ? ARG A 51 . ? 1_555 ? 7 AC1 14 ASP A 111 ? ASP A 105 . ? 1_555 ? 8 AC1 14 CA E . ? CA A 402 . ? 1_555 ? 9 AC1 14 CA F . ? CA A 403 . ? 1_555 ? 10 AC1 14 HOH I . ? HOH A 526 . ? 1_555 ? 11 AC1 14 HOH I . ? HOH A 531 . ? 1_555 ? 12 AC1 14 DC B 14 ? DC P 14 . ? 1_555 ? 13 AC1 14 DT C 4 ? DT T 4 . ? 1_555 ? 14 AC1 14 DG C 5 ? DG T 5 . ? 1_555 ? 15 AC2 4 ASP A 13 ? ASP A 7 . ? 1_555 ? 16 AC2 4 PHE A 14 ? PHE A 8 . ? 1_555 ? 17 AC2 4 ASP A 111 ? ASP A 105 . ? 1_555 ? 18 AC2 4 0OH D . ? 0OH A 401 . ? 1_555 ? 19 AC3 4 ASP A 13 ? ASP A 7 . ? 1_555 ? 20 AC3 4 GLU A 112 ? GLU A 106 . ? 1_555 ? 21 AC3 4 0OH D . ? 0OH A 401 . ? 1_555 ? 22 AC3 4 DC B 14 ? DC P 14 . ? 1_555 ? 23 AC4 5 ALA A 187 ? ALA A 181 . ? 1_555 ? 24 AC4 5 ILE A 192 ? ILE A 186 . ? 1_555 ? 25 AC4 5 HOH I . ? HOH A 512 . ? 1_555 ? 26 AC4 5 HOH I . ? HOH A 513 . ? 1_555 ? 27 AC4 5 DC B 13 ? DC P 13 . ? 1_555 ? 28 AC5 4 ASP A 300 ? ASP A 294 . ? 1_555 ? 29 AC5 4 HOH I . ? HOH A 529 . ? 1_555 ? 30 AC5 4 HOH I . ? HOH A 530 . ? 1_555 ? 31 AC5 4 DA B 10 ? DA P 10 . ? 1_555 ? # _database_PDB_matrix.entry_id 4GC6 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4GC6 _atom_sites.fract_transf_matrix[1][1] 0.010679 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009675 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.019051 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CA N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 HIS 1 -5 ? ? ? A . n A 1 2 HIS 2 -4 ? ? ? A . n A 1 3 HIS 3 -3 ? ? ? A . n A 1 4 HIS 4 -2 ? ? ? A . n A 1 5 HIS 5 -1 ? ? ? A . n A 1 6 HIS 6 0 ? ? ? A . n A 1 7 MET 7 1 1 MET MET A . n A 1 8 ILE 8 2 2 ILE ILE A . n A 1 9 VAL 9 3 3 VAL VAL A . n A 1 10 LEU 10 4 4 LEU LEU A . n A 1 11 PHE 11 5 5 PHE PHE A . n A 1 12 VAL 12 6 6 VAL VAL A . n A 1 13 ASP 13 7 7 ASP ASP A . n A 1 14 PHE 14 8 8 PHE PHE A . n A 1 15 ASP 15 9 9 ASP ASP A . n A 1 16 TYR 16 10 10 TYR TYR A . n A 1 17 PHE 17 11 11 PHE PHE A . n A 1 18 TYR 18 12 12 TYR TYR A . n A 1 19 ALA 19 13 13 ALA ALA A . n A 1 20 GLN 20 14 14 GLN GLN A . n A 1 21 VAL 21 15 15 VAL VAL A . n A 1 22 GLU 22 16 16 GLU GLU A . n A 1 23 GLU 23 17 17 GLU GLU A . n A 1 24 VAL 24 18 18 VAL VAL A . n A 1 25 LEU 25 19 19 LEU LEU A . n A 1 26 ASN 26 20 20 ASN ASN A . n A 1 27 PRO 27 21 21 PRO PRO A . n A 1 28 SER 28 22 22 SER SER A . n A 1 29 LEU 29 23 23 LEU LEU A . n A 1 30 LYS 30 24 24 LYS LYS A . n A 1 31 GLY 31 25 25 GLY GLY A . n A 1 32 LYS 32 26 26 LYS LYS A . n A 1 33 PRO 33 27 27 PRO PRO A . n A 1 34 VAL 34 28 28 VAL VAL A . n A 1 35 VAL 35 29 29 VAL VAL A . n A 1 36 VAL 36 30 30 VAL VAL A . n A 1 37 CYS 37 31 31 CYS CYS A . n A 1 38 VAL 38 32 32 VAL VAL A . n A 1 39 PHE 39 33 33 PHE PHE A . n A 1 40 SER 40 34 34 SER SER A . n A 1 41 GLY 41 35 35 GLY GLY A . n A 1 42 ARG 42 36 36 ARG ARG A . n A 1 43 PHE 43 37 37 PHE PHE A . n A 1 44 GLU 44 38 38 GLU GLU A . n A 1 45 ASP 45 39 39 ASP ASP A . n A 1 46 SER 46 40 40 SER SER A . n A 1 47 GLY 47 41 41 GLY GLY A . n A 1 48 ALA 48 42 42 ALA ALA A . n A 1 49 VAL 49 43 43 VAL VAL A . n A 1 50 ALA 50 44 44 ALA ALA A . n A 1 51 THR 51 45 45 THR THR A . n A 1 52 ALA 52 46 46 ALA ALA A . n A 1 53 ASN 53 47 47 ASN ASN A . n A 1 54 TYR 54 48 48 TYR TYR A . n A 1 55 GLU 55 49 49 GLU GLU A . n A 1 56 ALA 56 50 50 ALA ALA A . n A 1 57 ARG 57 51 51 ARG ARG A . n A 1 58 LYS 58 52 52 LYS LYS A . n A 1 59 PHE 59 53 53 PHE PHE A . n A 1 60 GLY 60 54 54 GLY GLY A . n A 1 61 VAL 61 55 55 VAL VAL A . n A 1 62 LYS 62 56 56 LYS LYS A . n A 1 63 ALA 63 57 57 ALA ALA A . n A 1 64 GLY 64 58 58 GLY GLY A . n A 1 65 ILE 65 59 59 ILE ILE A . n A 1 66 PRO 66 60 60 PRO PRO A . n A 1 67 ILE 67 61 61 ILE ILE A . n A 1 68 VAL 68 62 62 VAL VAL A . n A 1 69 GLU 69 63 63 GLU GLU A . n A 1 70 ALA 70 64 64 ALA ALA A . n A 1 71 LYS 71 65 65 LYS LYS A . n A 1 72 LYS 72 66 66 LYS LYS A . n A 1 73 ILE 73 67 67 ILE ILE A . n A 1 74 LEU 74 68 68 LEU LEU A . n A 1 75 PRO 75 69 69 PRO PRO A . n A 1 76 ASN 76 70 70 ASN ASN A . n A 1 77 ALA 77 71 71 ALA ALA A . n A 1 78 VAL 78 72 72 VAL VAL A . n A 1 79 TYR 79 73 73 TYR TYR A . n A 1 80 LEU 80 74 74 LEU LEU A . n A 1 81 PRO 81 75 75 PRO PRO A . n A 1 82 MET 82 76 76 MET MET A . n A 1 83 ARG 83 77 77 ARG ARG A . n A 1 84 LYS 84 78 78 LYS LYS A . n A 1 85 GLU 85 79 79 GLU GLU A . n A 1 86 VAL 86 80 80 VAL VAL A . n A 1 87 TYR 87 81 81 TYR TYR A . n A 1 88 GLN 88 82 82 GLN GLN A . n A 1 89 GLN 89 83 83 GLN GLN A . n A 1 90 VAL 90 84 84 VAL VAL A . n A 1 91 SER 91 85 85 SER SER A . n A 1 92 SER 92 86 86 SER SER A . n A 1 93 ARG 93 87 87 ARG ARG A . n A 1 94 ILE 94 88 88 ILE ILE A . n A 1 95 MET 95 89 89 MET MET A . n A 1 96 ASN 96 90 90 ASN ASN A . n A 1 97 LEU 97 91 91 LEU LEU A . n A 1 98 LEU 98 92 92 LEU LEU A . n A 1 99 ARG 99 93 93 ARG ARG A . n A 1 100 GLU 100 94 94 GLU GLU A . n A 1 101 TYR 101 95 95 TYR TYR A . n A 1 102 SER 102 96 96 SER SER A . n A 1 103 GLU 103 97 97 GLU GLU A . n A 1 104 LYS 104 98 98 LYS LYS A . n A 1 105 ILE 105 99 99 ILE ILE A . n A 1 106 GLU 106 100 100 GLU GLU A . n A 1 107 ILE 107 101 101 ILE ILE A . n A 1 108 ALA 108 102 102 ALA ALA A . n A 1 109 SER 109 103 103 SER SER A . n A 1 110 ILE 110 104 104 ILE ILE A . n A 1 111 ASP 111 105 105 ASP ASP A . n A 1 112 GLU 112 106 106 GLU GLU A . n A 1 113 ALA 113 107 107 ALA ALA A . n A 1 114 TYR 114 108 108 TYR TYR A . n A 1 115 LEU 115 109 109 LEU LEU A . n A 1 116 ASP 116 110 110 ASP ASP A . n A 1 117 ILE 117 111 111 ILE ILE A . n A 1 118 SER 118 112 112 SER SER A . n A 1 119 ASP 119 113 113 ASP ASP A . n A 1 120 LYS 120 114 114 LYS LYS A . n A 1 121 VAL 121 115 115 VAL VAL A . n A 1 122 ARG 122 116 116 ARG ARG A . n A 1 123 ASP 123 117 117 ASP ASP A . n A 1 124 TYR 124 118 118 TYR TYR A . n A 1 125 ARG 125 119 119 ARG ARG A . n A 1 126 GLU 126 120 120 GLU GLU A . n A 1 127 ALA 127 121 121 ALA ALA A . n A 1 128 TYR 128 122 122 TYR TYR A . n A 1 129 ASN 129 123 123 ASN ASN A . n A 1 130 LEU 130 124 124 LEU LEU A . n A 1 131 GLY 131 125 125 GLY GLY A . n A 1 132 LEU 132 126 126 LEU LEU A . n A 1 133 GLU 133 127 127 GLU GLU A . n A 1 134 ILE 134 128 128 ILE ILE A . n A 1 135 LYS 135 129 129 LYS LYS A . n A 1 136 ASN 136 130 130 ASN ASN A . n A 1 137 LYS 137 131 131 LYS LYS A . n A 1 138 ILE 138 132 132 ILE ILE A . n A 1 139 LEU 139 133 133 LEU LEU A . n A 1 140 GLU 140 134 134 GLU GLU A . n A 1 141 LYS 141 135 135 LYS LYS A . n A 1 142 GLU 142 136 136 GLU GLU A . n A 1 143 LYS 143 137 137 LYS LYS A . n A 1 144 ILE 144 138 138 ILE ILE A . n A 1 145 THR 145 139 139 THR THR A . n A 1 146 VAL 146 140 140 VAL VAL A . n A 1 147 THR 147 141 141 THR THR A . n A 1 148 VAL 148 142 142 VAL VAL A . n A 1 149 GLY 149 143 143 GLY GLY A . n A 1 150 ILE 150 144 144 ILE ILE A . n A 1 151 SER 151 145 145 SER SER A . n A 1 152 LYS 152 146 146 LYS LYS A . n A 1 153 ASN 153 147 147 ASN ASN A . n A 1 154 LYS 154 148 148 LYS LYS A . n A 1 155 VAL 155 149 149 VAL VAL A . n A 1 156 PHE 156 150 150 PHE PHE A . n A 1 157 ALA 157 151 151 ALA ALA A . n A 1 158 LYS 158 152 152 LYS LYS A . n A 1 159 ILE 159 153 153 ILE ILE A . n A 1 160 ALA 160 154 154 ALA ALA A . n A 1 161 ALA 161 155 155 ALA ALA A . n A 1 162 ASP 162 156 156 ASP ASP A . n A 1 163 MET 163 157 157 MET MET A . n A 1 164 ALA 164 158 158 ALA ALA A . n A 1 165 LYS 165 159 159 LYS LYS A . n A 1 166 PRO 166 160 160 PRO PRO A . n A 1 167 ASN 167 161 161 ASN ASN A . n A 1 168 GLY 168 162 162 GLY GLY A . n A 1 169 ILE 169 163 163 ILE ILE A . n A 1 170 LYS 170 164 164 LYS LYS A . n A 1 171 VAL 171 165 165 VAL VAL A . n A 1 172 ILE 172 166 166 ILE ILE A . n A 1 173 ASP 173 167 167 ASP ASP A . n A 1 174 ASP 174 168 168 ASP ASP A . n A 1 175 GLU 175 169 169 GLU GLU A . n A 1 176 GLU 176 170 170 GLU GLU A . n A 1 177 VAL 177 171 171 VAL VAL A . n A 1 178 LYS 178 172 172 LYS LYS A . n A 1 179 ARG 179 173 173 ARG ARG A . n A 1 180 LEU 180 174 174 LEU LEU A . n A 1 181 ILE 181 175 175 ILE ILE A . n A 1 182 ARG 182 176 176 ARG ARG A . n A 1 183 GLU 183 177 177 GLU GLU A . n A 1 184 LEU 184 178 178 LEU LEU A . n A 1 185 ASP 185 179 179 ASP ASP A . n A 1 186 ILE 186 180 180 ILE ILE A . n A 1 187 ALA 187 181 181 ALA ALA A . n A 1 188 ASP 188 182 182 ASP ASP A . n A 1 189 VAL 189 183 183 VAL VAL A . n A 1 190 PRO 190 184 184 PRO PRO A . n A 1 191 GLY 191 185 185 GLY GLY A . n A 1 192 ILE 192 186 186 ILE ILE A . n A 1 193 GLY 193 187 187 GLY GLY A . n A 1 194 ASN 194 188 188 ASN ASN A . n A 1 195 ILE 195 189 189 ILE ILE A . n A 1 196 THR 196 190 190 THR THR A . n A 1 197 ALA 197 191 191 ALA ALA A . n A 1 198 GLU 198 192 192 GLU GLU A . n A 1 199 LYS 199 193 193 LYS LYS A . n A 1 200 LEU 200 194 194 LEU LEU A . n A 1 201 LYS 201 195 195 LYS LYS A . n A 1 202 LYS 202 196 196 LYS LYS A . n A 1 203 LEU 203 197 197 LEU LEU A . n A 1 204 GLY 204 198 198 GLY GLY A . n A 1 205 ILE 205 199 199 ILE ILE A . n A 1 206 ASN 206 200 200 ASN ASN A . n A 1 207 LYS 207 201 201 LYS LYS A . n A 1 208 LEU 208 202 202 LEU LEU A . n A 1 209 VAL 209 203 203 VAL VAL A . n A 1 210 ASP 210 204 204 ASP ASP A . n A 1 211 THR 211 205 205 THR THR A . n A 1 212 LEU 212 206 206 LEU LEU A . n A 1 213 SER 213 207 207 SER SER A . n A 1 214 ILE 214 208 208 ILE ILE A . n A 1 215 GLU 215 209 209 GLU GLU A . n A 1 216 PHE 216 210 210 PHE PHE A . n A 1 217 ASP 217 211 211 ASP ASP A . n A 1 218 LYS 218 212 212 LYS LYS A . n A 1 219 LEU 219 213 213 LEU LEU A . n A 1 220 LYS 220 214 214 LYS LYS A . n A 1 221 GLY 221 215 215 GLY GLY A . n A 1 222 MET 222 216 216 MET MET A . n A 1 223 ILE 223 217 217 ILE ILE A . n A 1 224 GLY 224 218 218 GLY GLY A . n A 1 225 GLU 225 219 219 GLU GLU A . n A 1 226 ALA 226 220 220 ALA ALA A . n A 1 227 LYS 227 221 221 LYS LYS A . n A 1 228 ALA 228 222 222 ALA ALA A . n A 1 229 LYS 229 223 223 LYS LYS A . n A 1 230 TYR 230 224 224 TYR TYR A . n A 1 231 LEU 231 225 225 LEU LEU A . n A 1 232 ILE 232 226 226 ILE ILE A . n A 1 233 SER 233 227 227 SER SER A . n A 1 234 LEU 234 228 228 LEU LEU A . n A 1 235 ALA 235 229 229 ALA ALA A . n A 1 236 ARG 236 230 230 ARG ARG A . n A 1 237 ASP 237 231 231 ASP ASP A . n A 1 238 GLU 238 232 232 GLU GLU A . n A 1 239 TYR 239 233 233 TYR TYR A . n A 1 240 ASN 240 234 234 ASN ASN A . n A 1 241 GLU 241 235 235 GLU GLU A . n A 1 242 PRO 242 236 236 PRO PRO A . n A 1 243 ILE 243 237 237 ILE ILE A . n A 1 244 ARG 244 238 238 ARG ARG A . n A 1 245 THR 245 239 239 THR THR A . n A 1 246 ARG 246 240 240 ARG ARG A . n A 1 247 VAL 247 241 241 VAL VAL A . n A 1 248 ARG 248 242 242 ARG ARG A . n A 1 249 LYS 249 243 243 LYS LYS A . n A 1 250 SER 250 244 244 SER SER A . n A 1 251 ILE 251 245 245 ILE ILE A . n A 1 252 GLY 252 246 246 GLY GLY A . n A 1 253 ARG 253 247 247 ARG ARG A . n A 1 254 ILE 254 248 248 ILE ILE A . n A 1 255 VAL 255 249 249 VAL VAL A . n A 1 256 THR 256 250 250 THR THR A . n A 1 257 MET 257 251 251 MET MET A . n A 1 258 LYS 258 252 252 LYS LYS A . n A 1 259 ARG 259 253 253 ARG ARG A . n A 1 260 ASN 260 254 254 ASN ASN A . n A 1 261 SER 261 255 255 SER SER A . n A 1 262 ARG 262 256 256 ARG ARG A . n A 1 263 ASN 263 257 257 ASN ASN A . n A 1 264 LEU 264 258 258 LEU LEU A . n A 1 265 GLU 265 259 259 GLU GLU A . n A 1 266 GLU 266 260 260 GLU GLU A . n A 1 267 ILE 267 261 261 ILE ILE A . n A 1 268 LYS 268 262 262 LYS LYS A . n A 1 269 PRO 269 263 263 PRO PRO A . n A 1 270 TYR 270 264 264 TYR TYR A . n A 1 271 LEU 271 265 265 LEU LEU A . n A 1 272 PHE 272 266 266 PHE PHE A . n A 1 273 ARG 273 267 267 ARG ARG A . n A 1 274 ALA 274 268 268 ALA ALA A . n A 1 275 ILE 275 269 269 ILE ILE A . n A 1 276 GLU 276 270 270 GLU GLU A . n A 1 277 GLU 277 271 271 GLU GLU A . n A 1 278 SER 278 272 272 SER SER A . n A 1 279 TYR 279 273 273 TYR TYR A . n A 1 280 TYR 280 274 274 TYR TYR A . n A 1 281 LYS 281 275 275 LYS LYS A . n A 1 282 LEU 282 276 276 LEU LEU A . n A 1 283 ASP 283 277 277 ASP ASP A . n A 1 284 LYS 284 278 278 LYS LYS A . n A 1 285 ARG 285 279 279 ARG ARG A . n A 1 286 ILE 286 280 280 ILE ILE A . n A 1 287 PRO 287 281 281 PRO PRO A . n A 1 288 LYS 288 282 282 LYS LYS A . n A 1 289 ALA 289 283 283 ALA ALA A . n A 1 290 ILE 290 284 284 ILE ILE A . n A 1 291 HIS 291 285 285 HIS HIS A . n A 1 292 VAL 292 286 286 VAL VAL A . n A 1 293 VAL 293 287 287 VAL VAL A . n A 1 294 ALA 294 288 288 ALA ALA A . n A 1 295 VAL 295 289 289 VAL VAL A . n A 1 296 THR 296 290 290 THR THR A . n A 1 297 GLU 297 291 291 GLU GLU A . n A 1 298 ASP 298 292 292 ASP ASP A . n A 1 299 LEU 299 293 293 LEU LEU A . n A 1 300 ASP 300 294 294 ASP ASP A . n A 1 301 ILE 301 295 295 ILE ILE A . n A 1 302 VAL 302 296 296 VAL VAL A . n A 1 303 SER 303 297 297 SER SER A . n A 1 304 ARG 304 298 298 ARG ARG A . n A 1 305 GLY 305 299 299 GLY GLY A . n A 1 306 ARG 306 300 300 ARG ARG A . n A 1 307 THR 307 301 301 THR THR A . n A 1 308 PHE 308 302 302 PHE PHE A . n A 1 309 PRO 309 303 303 PRO PRO A . n A 1 310 HIS 310 304 304 HIS HIS A . n A 1 311 GLY 311 305 305 GLY GLY A . n A 1 312 ILE 312 306 306 ILE ILE A . n A 1 313 SER 313 307 307 SER SER A . n A 1 314 LYS 314 308 308 LYS LYS A . n A 1 315 GLU 315 309 309 GLU GLU A . n A 1 316 THR 316 310 310 THR THR A . n A 1 317 ALA 317 311 311 ALA ALA A . n A 1 318 TYR 318 312 312 TYR TYR A . n A 1 319 SER 319 313 313 SER SER A . n A 1 320 GLU 320 314 314 GLU GLU A . n A 1 321 SER 321 315 315 SER SER A . n A 1 322 VAL 322 316 316 VAL VAL A . n A 1 323 LYS 323 317 317 LYS LYS A . n A 1 324 LEU 324 318 318 LEU LEU A . n A 1 325 LEU 325 319 319 LEU LEU A . n A 1 326 GLN 326 320 320 GLN GLN A . n A 1 327 LYS 327 321 321 LYS LYS A . n A 1 328 ILE 328 322 322 ILE ILE A . n A 1 329 LEU 329 323 323 LEU LEU A . n A 1 330 GLU 330 324 324 GLU GLU A . n A 1 331 GLU 331 325 325 GLU GLU A . n A 1 332 ASP 332 326 326 ASP ASP A . n A 1 333 GLU 333 327 327 GLU GLU A . n A 1 334 ARG 334 328 328 ARG ARG A . n A 1 335 LYS 335 329 329 LYS LYS A . n A 1 336 ILE 336 330 330 ILE ILE A . n A 1 337 ARG 337 331 331 ARG ARG A . n A 1 338 ARG 338 332 332 ARG ARG A . n A 1 339 ILE 339 333 333 ILE ILE A . n A 1 340 GLY 340 334 334 GLY GLY A . n A 1 341 VAL 341 335 335 VAL VAL A . n A 1 342 ARG 342 336 336 ARG ARG A . n A 1 343 PHE 343 337 337 PHE PHE A . n A 1 344 SER 344 338 338 SER SER A . n A 1 345 LYS 345 339 339 LYS LYS A . n A 1 346 PHE 346 340 340 PHE PHE A . n A 1 347 ILE 347 341 341 ILE ILE A . n A 1 348 GLU 348 342 342 GLU GLU A . n A 1 349 ALA 349 343 ? ? ? A . n A 1 350 ILE 350 344 ? ? ? A . n A 1 351 GLY 351 345 ? ? ? A . n A 1 352 LEU 352 346 ? ? ? A . n A 1 353 ASP 353 347 ? ? ? A . n A 1 354 LYS 354 348 ? ? ? A . n A 1 355 PHE 355 349 ? ? ? A . n A 1 356 PHE 356 350 ? ? ? A . n A 1 357 ASP 357 351 ? ? ? A . n A 1 358 THR 358 352 ? ? ? A . n B 2 1 DG 1 1 1 DG DG P . n B 2 2 DG 2 2 2 DG DG P . n B 2 3 DG 3 3 3 DG DG P . n B 2 4 DG 4 4 4 DG DG P . n B 2 5 DG 5 5 5 DG DG P . n B 2 6 DA 6 6 6 DA DA P . n B 2 7 DA 7 7 7 DA DA P . n B 2 8 DG 8 8 8 DG DG P . n B 2 9 DG 9 9 9 DG DG P . n B 2 10 DA 10 10 10 DA DA P . n B 2 11 DT 11 11 11 DT DT P . n B 2 12 DT 12 12 12 DT DT P . n B 2 13 DC 13 13 13 DC DC P . n B 2 14 DC 14 14 14 DC DC P . n C 3 1 DT 1 1 ? ? ? T . n C 3 2 DC 2 2 ? ? ? T . n C 3 3 DA 3 3 3 DA DA T . n C 3 4 DT 4 4 4 DT DT T . n C 3 5 DG 5 5 5 DG DG T . n C 3 6 DG 6 6 6 DG DG T . n C 3 7 DA 7 7 7 DA DA T . n C 3 8 DA 8 8 8 DA DA T . n C 3 9 DT 9 9 9 DT DT T . n C 3 10 DC 10 10 10 DC DC T . n C 3 11 DC 11 11 11 DC DC T . n C 3 12 DT 12 12 12 DT DT T . n C 3 13 DT 13 13 13 DT DT T . n C 3 14 DC 14 14 14 DC DC T . n C 3 15 DC 15 15 15 DC DC T . n C 3 16 DC 16 16 16 DC DC T . n C 3 17 DC 17 17 17 DC DC T . n C 3 18 DC 18 18 18 DC DC T . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 0OH 1 401 1 0OH 0OH A . E 5 CA 1 402 1 CA CA A . F 5 CA 1 403 2 CA CA A . G 5 CA 1 404 3 CA CA A . H 5 CA 1 405 4 CA CA A . I 6 HOH 1 501 1 HOH HOH A . I 6 HOH 2 502 2 HOH HOH A . I 6 HOH 3 503 4 HOH HOH A . I 6 HOH 4 504 5 HOH HOH A . I 6 HOH 5 505 7 HOH HOH A . I 6 HOH 6 506 8 HOH HOH A . I 6 HOH 7 507 9 HOH HOH A . I 6 HOH 8 508 10 HOH HOH A . I 6 HOH 9 509 11 HOH HOH A . I 6 HOH 10 510 12 HOH HOH A . I 6 HOH 11 511 14 HOH HOH A . I 6 HOH 12 512 17 HOH HOH A . I 6 HOH 13 513 18 HOH HOH A . I 6 HOH 14 514 19 HOH HOH A . I 6 HOH 15 515 20 HOH HOH A . I 6 HOH 16 516 21 HOH HOH A . I 6 HOH 17 517 22 HOH HOH A . I 6 HOH 18 518 23 HOH HOH A . I 6 HOH 19 519 25 HOH HOH A . I 6 HOH 20 520 26 HOH HOH A . I 6 HOH 21 521 30 HOH HOH A . I 6 HOH 22 522 31 HOH HOH A . I 6 HOH 23 523 34 HOH HOH A . I 6 HOH 24 524 36 HOH HOH A . I 6 HOH 25 525 39 HOH HOH A . I 6 HOH 26 526 40 HOH HOH A . I 6 HOH 27 527 41 HOH HOH A . I 6 HOH 28 528 42 HOH HOH A . I 6 HOH 29 529 44 HOH HOH A . I 6 HOH 30 530 45 HOH HOH A . I 6 HOH 31 531 46 HOH HOH A . I 6 HOH 32 532 43 HOH HOH A . J 6 HOH 1 101 6 HOH HOH P . J 6 HOH 2 102 13 HOH HOH P . J 6 HOH 3 103 15 HOH HOH P . J 6 HOH 4 104 16 HOH HOH P . J 6 HOH 5 105 28 HOH HOH P . J 6 HOH 6 106 32 HOH HOH P . J 6 HOH 7 107 33 HOH HOH P . J 6 HOH 8 108 35 HOH HOH P . K 6 HOH 1 101 3 HOH HOH T . K 6 HOH 2 102 24 HOH HOH T . K 6 HOH 3 103 27 HOH HOH T . K 6 HOH 4 104 29 HOH HOH T . K 6 HOH 5 105 37 HOH HOH T . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4330 ? 1 MORE -35 ? 1 'SSA (A^2)' 20450 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OD1 ? A ASP 13 ? A ASP 7 ? 1_555 CA ? E CA . ? A CA 402 ? 1_555 O ? A PHE 14 ? A PHE 8 ? 1_555 99.9 ? 2 OD1 ? A ASP 13 ? A ASP 7 ? 1_555 CA ? E CA . ? A CA 402 ? 1_555 OD2 ? A ASP 111 ? A ASP 105 ? 1_555 141.8 ? 3 O ? A PHE 14 ? A PHE 8 ? 1_555 CA ? E CA . ? A CA 402 ? 1_555 OD2 ? A ASP 111 ? A ASP 105 ? 1_555 84.9 ? 4 OD1 ? A ASP 13 ? A ASP 7 ? 1_555 CA ? E CA . ? A CA 402 ? 1_555 OAH ? D 0OH . ? A 0OH 401 ? 1_555 106.2 ? 5 O ? A PHE 14 ? A PHE 8 ? 1_555 CA ? E CA . ? A CA 402 ? 1_555 OAH ? D 0OH . ? A 0OH 401 ? 1_555 134.9 ? 6 OD2 ? A ASP 111 ? A ASP 105 ? 1_555 CA ? E CA . ? A CA 402 ? 1_555 OAH ? D 0OH . ? A 0OH 401 ? 1_555 95.9 ? 7 O ? A ALA 187 ? A ALA 181 ? 1_555 CA ? G CA . ? A CA 404 ? 1_555 O ? A ILE 192 ? A ILE 186 ? 1_555 70.2 ? 8 O ? A ALA 187 ? A ALA 181 ? 1_555 CA ? G CA . ? A CA 404 ? 1_555 O ? I HOH . ? A HOH 512 ? 1_555 91.4 ? 9 O ? A ILE 192 ? A ILE 186 ? 1_555 CA ? G CA . ? A CA 404 ? 1_555 O ? I HOH . ? A HOH 512 ? 1_555 119.4 ? 10 O ? A ALA 187 ? A ALA 181 ? 1_555 CA ? G CA . ? A CA 404 ? 1_555 O ? I HOH . ? A HOH 513 ? 1_555 55.3 ? 11 O ? A ILE 192 ? A ILE 186 ? 1_555 CA ? G CA . ? A CA 404 ? 1_555 O ? I HOH . ? A HOH 513 ? 1_555 51.8 ? 12 O ? I HOH . ? A HOH 512 ? 1_555 CA ? G CA . ? A CA 404 ? 1_555 O ? I HOH . ? A HOH 513 ? 1_555 146.6 ? 13 O ? A ALA 187 ? A ALA 181 ? 1_555 CA ? G CA . ? A CA 404 ? 1_555 O ? I HOH . ? A HOH 514 ? 1_555 120.4 ? 14 O ? A ILE 192 ? A ILE 186 ? 1_555 CA ? G CA . ? A CA 404 ? 1_555 O ? I HOH . ? A HOH 514 ? 1_555 91.4 ? 15 O ? I HOH . ? A HOH 512 ? 1_555 CA ? G CA . ? A CA 404 ? 1_555 O ? I HOH . ? A HOH 514 ? 1_555 142.7 ? 16 O ? I HOH . ? A HOH 513 ? 1_555 CA ? G CA . ? A CA 404 ? 1_555 O ? I HOH . ? A HOH 514 ? 1_555 68.6 ? 17 OD2 ? A ASP 300 ? A ASP 294 ? 1_555 CA ? H CA . ? A CA 405 ? 1_555 O ? I HOH . ? A HOH 529 ? 1_555 59.1 ? 18 OD2 ? A ASP 300 ? A ASP 294 ? 1_555 CA ? H CA . ? A CA 405 ? 1_555 O ? I HOH . ? A HOH 530 ? 1_555 97.5 ? 19 O ? I HOH . ? A HOH 529 ? 1_555 CA ? H CA . ? A CA 405 ? 1_555 O ? I HOH . ? A HOH 530 ? 1_555 124.0 ? 20 OD2 ? A ASP 300 ? A ASP 294 ? 1_555 CA ? H CA . ? A CA 405 ? 1_555 OP2 ? B DA 10 ? P DA 10 ? 1_555 111.2 ? 21 O ? I HOH . ? A HOH 529 ? 1_555 CA ? H CA . ? A CA 405 ? 1_555 OP2 ? B DA 10 ? P DA 10 ? 1_555 80.7 ? 22 O ? I HOH . ? A HOH 530 ? 1_555 CA ? H CA . ? A CA 405 ? 1_555 OP2 ? B DA 10 ? P DA 10 ? 1_555 60.3 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-10-24 2 'Structure model' 1 1 2013-02-20 3 'Structure model' 1 2 2017-11-15 4 'Structure model' 1 3 2023-09-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' Advisory 3 3 'Structure model' 'Refinement description' 4 4 'Structure model' Advisory 5 4 'Structure model' 'Data collection' 6 4 'Structure model' 'Database references' 7 4 'Structure model' 'Derived calculations' 8 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' pdbx_unobs_or_zero_occ_atoms 2 3 'Structure model' software 3 4 'Structure model' chem_comp_atom 4 4 'Structure model' chem_comp_bond 5 4 'Structure model' database_2 6 4 'Structure model' pdbx_initial_refinement_model 7 4 'Structure model' pdbx_struct_conn_angle 8 4 'Structure model' pdbx_unobs_or_zero_occ_atoms 9 4 'Structure model' struct_conn 10 4 'Structure model' struct_ref_seq_dif 11 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.name' 2 4 'Structure model' '_database_2.pdbx_DOI' 3 4 'Structure model' '_database_2.pdbx_database_accession' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 15 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 16 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 17 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 18 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 19 4 'Structure model' '_pdbx_struct_conn_angle.value' 20 4 'Structure model' '_struct_conn.pdbx_dist_value' 21 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 22 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 23 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 24 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 25 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 26 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 27 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 28 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 29 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 30 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 31 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 32 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 33 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 34 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 35 4 'Structure model' '_struct_ref_seq_dif.details' 36 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 37 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 38 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 PHENIX 'model building' . ? 2 PHENIX refinement '(phenix.refine: 1.7.3_928)' ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 PHENIX phasing . ? 6 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 511 ? ? O A HOH 528 ? ? 1.94 2 1 NH1 A ARG 332 ? ? OP2 T DG 5 ? ? 2.02 3 1 O A HOH 526 ? ? O A HOH 531 ? ? 2.12 4 1 N A GLU 342 ? ? O A HOH 522 ? ? 2.17 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" P DG 5 ? ? "C1'" P DG 5 ? ? N9 P DG 5 ? ? 111.33 108.30 3.03 0.30 N 2 1 "O5'" P DA 6 ? ? "C5'" P DA 6 ? ? "C4'" P DA 6 ? ? 104.22 109.40 -5.18 0.80 N 3 1 "O4'" P DA 6 ? ? "C1'" P DA 6 ? ? N9 P DA 6 ? ? 111.94 108.30 3.64 0.30 N 4 1 "O4'" P DG 8 ? ? "C1'" P DG 8 ? ? N9 P DG 8 ? ? 114.25 108.30 5.95 0.30 N 5 1 "C3'" P DG 9 ? ? "C2'" P DG 9 ? ? "C1'" P DG 9 ? ? 97.44 102.40 -4.96 0.80 N 6 1 "O4'" P DG 9 ? ? "C1'" P DG 9 ? ? N9 P DG 9 ? ? 111.19 108.30 2.89 0.30 N 7 1 "O4'" P DC 13 ? ? "C1'" P DC 13 ? ? N1 P DC 13 ? ? 112.80 108.30 4.50 0.30 N 8 1 "O4'" T DA 3 ? ? "C4'" T DA 3 ? ? "C3'" T DA 3 ? ? 100.89 104.50 -3.61 0.40 N 9 1 "C3'" T DA 3 ? ? "C2'" T DA 3 ? ? "C1'" T DA 3 ? ? 96.94 102.40 -5.46 0.80 N 10 1 "C3'" T DG 5 ? ? "C2'" T DG 5 ? ? "C1'" T DG 5 ? ? 95.64 102.40 -6.76 0.80 N 11 1 "O4'" T DG 6 ? ? "C1'" T DG 6 ? ? N9 T DG 6 ? ? 112.59 108.30 4.29 0.30 N 12 1 "C1'" T DA 7 ? ? "O4'" T DA 7 ? ? "C4'" T DA 7 ? ? 101.59 110.10 -8.51 1.00 N 13 1 "O4'" T DA 7 ? ? "C1'" T DA 7 ? ? N9 T DA 7 ? ? 110.33 108.30 2.03 0.30 N 14 1 "O4'" T DA 8 ? ? "C1'" T DA 8 ? ? N9 T DA 8 ? ? 103.66 108.00 -4.34 0.70 N 15 1 "O4'" T DC 10 ? ? "C1'" T DC 10 ? ? N1 T DC 10 ? ? 115.45 108.30 7.15 0.30 N 16 1 "O4'" T DC 11 ? ? "C1'" T DC 11 ? ? N1 T DC 11 ? ? 114.13 108.30 5.83 0.30 N 17 1 "C1'" T DT 13 ? ? "O4'" T DT 13 ? ? "C4'" T DT 13 ? ? 103.90 110.10 -6.20 1.00 N 18 1 "C1'" T DC 14 ? ? "O4'" T DC 14 ? ? "C4'" T DC 14 ? ? 101.24 110.10 -8.86 1.00 N 19 1 "O4'" T DC 17 ? ? "C1'" T DC 17 ? ? N1 T DC 17 ? ? 111.97 108.30 3.67 0.30 N 20 1 "O4'" T DC 18 ? ? "C1'" T DC 18 ? ? N1 T DC 18 ? ? 111.19 108.30 2.89 0.30 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 TYR A 10 ? ? 25.96 52.78 2 1 ASN A 20 ? ? -159.63 73.32 3 1 ARG A 36 ? ? -69.11 -78.98 4 1 PHE A 37 ? ? -96.60 -156.92 5 1 ASN A 47 ? ? -62.50 -179.52 6 1 ARG A 93 ? ? -58.02 -5.63 7 1 TYR A 95 ? ? -134.30 -42.19 8 1 ASP A 113 ? ? -93.75 59.08 9 1 LYS A 114 ? ? -170.85 0.08 10 1 ASP A 117 ? ? 55.99 160.15 11 1 SER A 145 ? ? -165.51 -161.81 12 1 ASN A 161 ? ? 40.43 21.26 13 1 ASN A 234 ? ? -161.28 46.46 14 1 ASP A 277 ? ? 59.55 -125.45 15 1 HIS A 304 ? ? -115.83 -169.34 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 0 A GLU 134 ? CG ? A GLU 140 CG 2 1 Y 0 A GLU 134 ? CD ? A GLU 140 CD 3 1 Y 0 A GLU 169 ? CD ? A GLU 175 CD 4 1 Y 0 A GLU 192 ? CD ? A GLU 198 CD 5 1 Y 0 A GLU 235 ? CD ? A GLU 241 CD 6 1 Y 0 A GLU 309 ? N B A GLU 315 N 7 1 Y 0 A GLU 309 ? CA B A GLU 315 CA 8 1 Y 0 A GLU 309 ? C B A GLU 315 C 9 1 Y 0 A GLU 309 ? O B A GLU 315 O 10 1 Y 0 A GLU 309 ? CB B A GLU 315 CB 11 1 Y 0 A GLU 309 ? CG B A GLU 315 CG 12 1 Y 0 A GLU 309 ? CD B A GLU 315 CD 13 1 Y 0 A GLU 309 ? OE1 B A GLU 315 OE1 14 1 Y 0 A GLU 309 ? OE2 B A GLU 315 OE2 15 1 Y 0 A GLU 324 ? CD ? A GLU 330 CD 16 1 Y 1 A GLU 342 ? CA ? A GLU 348 CA 17 1 Y 1 A GLU 342 ? C ? A GLU 348 C 18 1 Y 1 A GLU 342 ? O ? A GLU 348 O 19 1 Y 1 A GLU 342 ? CB ? A GLU 348 CB 20 1 Y 1 A GLU 342 ? CG ? A GLU 348 CG 21 1 Y 1 A GLU 342 ? CD ? A GLU 348 CD 22 1 Y 1 A GLU 342 ? OE1 ? A GLU 348 OE1 23 1 Y 1 A GLU 342 ? OE2 ? A GLU 348 OE2 24 1 N 1 A 0OH 401 ? OAF ? D 0OH 1 OAF 25 1 N 1 A 0OH 401 ? PBC ? D 0OH 1 PBC 26 1 N 1 A 0OH 401 ? OAG ? D 0OH 1 OAG 27 1 N 1 A 0OH 401 ? OAB ? D 0OH 1 OAB 28 1 N 1 A 0OH 401 ? OAS ? D 0OH 1 OAS 29 1 N 1 A 0OH 401 ? PBE ? D 0OH 1 PBE 30 1 N 1 A 0OH 401 ? OAI ? D 0OH 1 OAI 31 1 N 1 A 0OH 401 ? OAD ? D 0OH 1 OAD # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A HIS -5 ? A HIS 1 2 1 Y 1 A HIS -4 ? A HIS 2 3 1 Y 1 A HIS -3 ? A HIS 3 4 1 Y 1 A HIS -2 ? A HIS 4 5 1 Y 1 A HIS -1 ? A HIS 5 6 1 Y 1 A HIS 0 ? A HIS 6 7 1 Y 1 A ALA 343 ? A ALA 349 8 1 Y 1 A ILE 344 ? A ILE 350 9 1 Y 1 A GLY 345 ? A GLY 351 10 1 Y 1 A LEU 346 ? A LEU 352 11 1 Y 1 A ASP 347 ? A ASP 353 12 1 Y 1 A LYS 348 ? A LYS 354 13 1 Y 1 A PHE 349 ? A PHE 355 14 1 Y 1 A PHE 350 ? A PHE 356 15 1 Y 1 A ASP 351 ? A ASP 357 16 1 Y 1 A THR 352 ? A THR 358 17 1 Y 1 T DT 1 ? C DT 1 18 1 Y 1 T DC 2 ? C DC 2 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 0OH OAF O N N 1 0OH PBC P N N 2 0OH OAG O N N 3 0OH OAB O N N 4 0OH OAS O N N 5 0OH PBE P N N 6 0OH OAI O N N 7 0OH OAD O N N 8 0OH OAT O N N 9 0OH PBD P N N 10 0OH OAH O N N 11 0OH OAC O N N 12 0OH OAR O N N 13 0OH CAL C N N 14 0OH CBB C N R 15 0OH CAZ C N S 16 0OH CAN C N N 17 0OH CAX C N S 18 0OH OAE O N N 19 0OH CAM C N N 20 0OH CAY C N S 21 0OH N9 N Y N 22 0OH C8 C Y N 23 0OH N7 N Y N 24 0OH C5 C Y N 25 0OH C4 C Y N 26 0OH N3 N Y N 27 0OH C2 C Y N 28 0OH N1 N Y N 29 0OH C6 C Y N 30 0OH N6 N N N 31 0OH H1 H N N 32 0OH H2 H N N 33 0OH H3 H N N 34 0OH H4 H N N 35 0OH H5 H N N 36 0OH H6 H N N 37 0OH H7 H N N 38 0OH H8 H N N 39 0OH H9 H N N 40 0OH H10 H N N 41 0OH H11 H N N 42 0OH H12 H N N 43 0OH H13 H N N 44 0OH H14 H N N 45 0OH H15 H N N 46 0OH H16 H N N 47 0OH H17 H N N 48 0OH H18 H N N 49 ALA N N N N 50 ALA CA C N S 51 ALA C C N N 52 ALA O O N N 53 ALA CB C N N 54 ALA OXT O N N 55 ALA H H N N 56 ALA H2 H N N 57 ALA HA H N N 58 ALA HB1 H N N 59 ALA HB2 H N N 60 ALA HB3 H N N 61 ALA HXT H N N 62 ARG N N N N 63 ARG CA C N S 64 ARG C C N N 65 ARG O O N N 66 ARG CB C N N 67 ARG CG C N N 68 ARG CD C N N 69 ARG NE N N N 70 ARG CZ C N N 71 ARG NH1 N N N 72 ARG NH2 N N N 73 ARG OXT O N N 74 ARG H H N N 75 ARG H2 H N N 76 ARG HA H N N 77 ARG HB2 H N N 78 ARG HB3 H N N 79 ARG HG2 H N N 80 ARG HG3 H N N 81 ARG HD2 H N N 82 ARG HD3 H N N 83 ARG HE H N N 84 ARG HH11 H N N 85 ARG HH12 H N N 86 ARG HH21 H N N 87 ARG HH22 H N N 88 ARG HXT H N N 89 ASN N N N N 90 ASN CA C N S 91 ASN C C N N 92 ASN O O N N 93 ASN CB C N N 94 ASN CG C N N 95 ASN OD1 O N N 96 ASN ND2 N N N 97 ASN OXT O N N 98 ASN H H N N 99 ASN H2 H N N 100 ASN HA H N N 101 ASN HB2 H N N 102 ASN HB3 H N N 103 ASN HD21 H N N 104 ASN HD22 H N N 105 ASN HXT H N N 106 ASP N N N N 107 ASP CA C N S 108 ASP C C N N 109 ASP O O N N 110 ASP CB C N N 111 ASP CG C N N 112 ASP OD1 O N N 113 ASP OD2 O N N 114 ASP OXT O N N 115 ASP H H N N 116 ASP H2 H N N 117 ASP HA H N N 118 ASP HB2 H N N 119 ASP HB3 H N N 120 ASP HD2 H N N 121 ASP HXT H N N 122 CA CA CA N N 123 CYS N N N N 124 CYS CA C N R 125 CYS C C N N 126 CYS O O N N 127 CYS CB C N N 128 CYS SG S N N 129 CYS OXT O N N 130 CYS H H N N 131 CYS H2 H N N 132 CYS HA H N N 133 CYS HB2 H N N 134 CYS HB3 H N N 135 CYS HG H N N 136 CYS HXT H N N 137 DA OP3 O N N 138 DA P P N N 139 DA OP1 O N N 140 DA OP2 O N N 141 DA "O5'" O N N 142 DA "C5'" C N N 143 DA "C4'" C N R 144 DA "O4'" O N N 145 DA "C3'" C N S 146 DA "O3'" O N N 147 DA "C2'" C N N 148 DA "C1'" C N R 149 DA N9 N Y N 150 DA C8 C Y N 151 DA N7 N Y N 152 DA C5 C Y N 153 DA C6 C Y N 154 DA N6 N N N 155 DA N1 N Y N 156 DA C2 C Y N 157 DA N3 N Y N 158 DA C4 C Y N 159 DA HOP3 H N N 160 DA HOP2 H N N 161 DA "H5'" H N N 162 DA "H5''" H N N 163 DA "H4'" H N N 164 DA "H3'" H N N 165 DA "HO3'" H N N 166 DA "H2'" H N N 167 DA "H2''" H N N 168 DA "H1'" H N N 169 DA H8 H N N 170 DA H61 H N N 171 DA H62 H N N 172 DA H2 H N N 173 DC OP3 O N N 174 DC P P N N 175 DC OP1 O N N 176 DC OP2 O N N 177 DC "O5'" O N N 178 DC "C5'" C N N 179 DC "C4'" C N R 180 DC "O4'" O N N 181 DC "C3'" C N S 182 DC "O3'" O N N 183 DC "C2'" C N N 184 DC "C1'" C N R 185 DC N1 N N N 186 DC C2 C N N 187 DC O2 O N N 188 DC N3 N N N 189 DC C4 C N N 190 DC N4 N N N 191 DC C5 C N N 192 DC C6 C N N 193 DC HOP3 H N N 194 DC HOP2 H N N 195 DC "H5'" H N N 196 DC "H5''" H N N 197 DC "H4'" H N N 198 DC "H3'" H N N 199 DC "HO3'" H N N 200 DC "H2'" H N N 201 DC "H2''" H N N 202 DC "H1'" H N N 203 DC H41 H N N 204 DC H42 H N N 205 DC H5 H N N 206 DC H6 H N N 207 DG OP3 O N N 208 DG P P N N 209 DG OP1 O N N 210 DG OP2 O N N 211 DG "O5'" O N N 212 DG "C5'" C N N 213 DG "C4'" C N R 214 DG "O4'" O N N 215 DG "C3'" C N S 216 DG "O3'" O N N 217 DG "C2'" C N N 218 DG "C1'" C N R 219 DG N9 N Y N 220 DG C8 C Y N 221 DG N7 N Y N 222 DG C5 C Y N 223 DG C6 C N N 224 DG O6 O N N 225 DG N1 N N N 226 DG C2 C N N 227 DG N2 N N N 228 DG N3 N N N 229 DG C4 C Y N 230 DG HOP3 H N N 231 DG HOP2 H N N 232 DG "H5'" H N N 233 DG "H5''" H N N 234 DG "H4'" H N N 235 DG "H3'" H N N 236 DG "HO3'" H N N 237 DG "H2'" H N N 238 DG "H2''" H N N 239 DG "H1'" H N N 240 DG H8 H N N 241 DG H1 H N N 242 DG H21 H N N 243 DG H22 H N N 244 DT OP3 O N N 245 DT P P N N 246 DT OP1 O N N 247 DT OP2 O N N 248 DT "O5'" O N N 249 DT "C5'" C N N 250 DT "C4'" C N R 251 DT "O4'" O N N 252 DT "C3'" C N S 253 DT "O3'" O N N 254 DT "C2'" C N N 255 DT "C1'" C N R 256 DT N1 N N N 257 DT C2 C N N 258 DT O2 O N N 259 DT N3 N N N 260 DT C4 C N N 261 DT O4 O N N 262 DT C5 C N N 263 DT C7 C N N 264 DT C6 C N N 265 DT HOP3 H N N 266 DT HOP2 H N N 267 DT "H5'" H N N 268 DT "H5''" H N N 269 DT "H4'" H N N 270 DT "H3'" H N N 271 DT "HO3'" H N N 272 DT "H2'" H N N 273 DT "H2''" H N N 274 DT "H1'" H N N 275 DT H3 H N N 276 DT H71 H N N 277 DT H72 H N N 278 DT H73 H N N 279 DT H6 H N N 280 GLN N N N N 281 GLN CA C N S 282 GLN C C N N 283 GLN O O N N 284 GLN CB C N N 285 GLN CG C N N 286 GLN CD C N N 287 GLN OE1 O N N 288 GLN NE2 N N N 289 GLN OXT O N N 290 GLN H H N N 291 GLN H2 H N N 292 GLN HA H N N 293 GLN HB2 H N N 294 GLN HB3 H N N 295 GLN HG2 H N N 296 GLN HG3 H N N 297 GLN HE21 H N N 298 GLN HE22 H N N 299 GLN HXT H N N 300 GLU N N N N 301 GLU CA C N S 302 GLU C C N N 303 GLU O O N N 304 GLU CB C N N 305 GLU CG C N N 306 GLU CD C N N 307 GLU OE1 O N N 308 GLU OE2 O N N 309 GLU OXT O N N 310 GLU H H N N 311 GLU H2 H N N 312 GLU HA H N N 313 GLU HB2 H N N 314 GLU HB3 H N N 315 GLU HG2 H N N 316 GLU HG3 H N N 317 GLU HE2 H N N 318 GLU HXT H N N 319 GLY N N N N 320 GLY CA C N N 321 GLY C C N N 322 GLY O O N N 323 GLY OXT O N N 324 GLY H H N N 325 GLY H2 H N N 326 GLY HA2 H N N 327 GLY HA3 H N N 328 GLY HXT H N N 329 HIS N N N N 330 HIS CA C N S 331 HIS C C N N 332 HIS O O N N 333 HIS CB C N N 334 HIS CG C Y N 335 HIS ND1 N Y N 336 HIS CD2 C Y N 337 HIS CE1 C Y N 338 HIS NE2 N Y N 339 HIS OXT O N N 340 HIS H H N N 341 HIS H2 H N N 342 HIS HA H N N 343 HIS HB2 H N N 344 HIS HB3 H N N 345 HIS HD1 H N N 346 HIS HD2 H N N 347 HIS HE1 H N N 348 HIS HE2 H N N 349 HIS HXT H N N 350 HOH O O N N 351 HOH H1 H N N 352 HOH H2 H N N 353 ILE N N N N 354 ILE CA C N S 355 ILE C C N N 356 ILE O O N N 357 ILE CB C N S 358 ILE CG1 C N N 359 ILE CG2 C N N 360 ILE CD1 C N N 361 ILE OXT O N N 362 ILE H H N N 363 ILE H2 H N N 364 ILE HA H N N 365 ILE HB H N N 366 ILE HG12 H N N 367 ILE HG13 H N N 368 ILE HG21 H N N 369 ILE HG22 H N N 370 ILE HG23 H N N 371 ILE HD11 H N N 372 ILE HD12 H N N 373 ILE HD13 H N N 374 ILE HXT H N N 375 LEU N N N N 376 LEU CA C N S 377 LEU C C N N 378 LEU O O N N 379 LEU CB C N N 380 LEU CG C N N 381 LEU CD1 C N N 382 LEU CD2 C N N 383 LEU OXT O N N 384 LEU H H N N 385 LEU H2 H N N 386 LEU HA H N N 387 LEU HB2 H N N 388 LEU HB3 H N N 389 LEU HG H N N 390 LEU HD11 H N N 391 LEU HD12 H N N 392 LEU HD13 H N N 393 LEU HD21 H N N 394 LEU HD22 H N N 395 LEU HD23 H N N 396 LEU HXT H N N 397 LYS N N N N 398 LYS CA C N S 399 LYS C C N N 400 LYS O O N N 401 LYS CB C N N 402 LYS CG C N N 403 LYS CD C N N 404 LYS CE C N N 405 LYS NZ N N N 406 LYS OXT O N N 407 LYS H H N N 408 LYS H2 H N N 409 LYS HA H N N 410 LYS HB2 H N N 411 LYS HB3 H N N 412 LYS HG2 H N N 413 LYS HG3 H N N 414 LYS HD2 H N N 415 LYS HD3 H N N 416 LYS HE2 H N N 417 LYS HE3 H N N 418 LYS HZ1 H N N 419 LYS HZ2 H N N 420 LYS HZ3 H N N 421 LYS HXT H N N 422 MET N N N N 423 MET CA C N S 424 MET C C N N 425 MET O O N N 426 MET CB C N N 427 MET CG C N N 428 MET SD S N N 429 MET CE C N N 430 MET OXT O N N 431 MET H H N N 432 MET H2 H N N 433 MET HA H N N 434 MET HB2 H N N 435 MET HB3 H N N 436 MET HG2 H N N 437 MET HG3 H N N 438 MET HE1 H N N 439 MET HE2 H N N 440 MET HE3 H N N 441 MET HXT H N N 442 PHE N N N N 443 PHE CA C N S 444 PHE C C N N 445 PHE O O N N 446 PHE CB C N N 447 PHE CG C Y N 448 PHE CD1 C Y N 449 PHE CD2 C Y N 450 PHE CE1 C Y N 451 PHE CE2 C Y N 452 PHE CZ C Y N 453 PHE OXT O N N 454 PHE H H N N 455 PHE H2 H N N 456 PHE HA H N N 457 PHE HB2 H N N 458 PHE HB3 H N N 459 PHE HD1 H N N 460 PHE HD2 H N N 461 PHE HE1 H N N 462 PHE HE2 H N N 463 PHE HZ H N N 464 PHE HXT H N N 465 PRO N N N N 466 PRO CA C N S 467 PRO C C N N 468 PRO O O N N 469 PRO CB C N N 470 PRO CG C N N 471 PRO CD C N N 472 PRO OXT O N N 473 PRO H H N N 474 PRO HA H N N 475 PRO HB2 H N N 476 PRO HB3 H N N 477 PRO HG2 H N N 478 PRO HG3 H N N 479 PRO HD2 H N N 480 PRO HD3 H N N 481 PRO HXT H N N 482 SER N N N N 483 SER CA C N S 484 SER C C N N 485 SER O O N N 486 SER CB C N N 487 SER OG O N N 488 SER OXT O N N 489 SER H H N N 490 SER H2 H N N 491 SER HA H N N 492 SER HB2 H N N 493 SER HB3 H N N 494 SER HG H N N 495 SER HXT H N N 496 THR N N N N 497 THR CA C N S 498 THR C C N N 499 THR O O N N 500 THR CB C N R 501 THR OG1 O N N 502 THR CG2 C N N 503 THR OXT O N N 504 THR H H N N 505 THR H2 H N N 506 THR HA H N N 507 THR HB H N N 508 THR HG1 H N N 509 THR HG21 H N N 510 THR HG22 H N N 511 THR HG23 H N N 512 THR HXT H N N 513 TYR N N N N 514 TYR CA C N S 515 TYR C C N N 516 TYR O O N N 517 TYR CB C N N 518 TYR CG C Y N 519 TYR CD1 C Y N 520 TYR CD2 C Y N 521 TYR CE1 C Y N 522 TYR CE2 C Y N 523 TYR CZ C Y N 524 TYR OH O N N 525 TYR OXT O N N 526 TYR H H N N 527 TYR H2 H N N 528 TYR HA H N N 529 TYR HB2 H N N 530 TYR HB3 H N N 531 TYR HD1 H N N 532 TYR HD2 H N N 533 TYR HE1 H N N 534 TYR HE2 H N N 535 TYR HH H N N 536 TYR HXT H N N 537 VAL N N N N 538 VAL CA C N S 539 VAL C C N N 540 VAL O O N N 541 VAL CB C N N 542 VAL CG1 C N N 543 VAL CG2 C N N 544 VAL OXT O N N 545 VAL H H N N 546 VAL H2 H N N 547 VAL HA H N N 548 VAL HB H N N 549 VAL HG11 H N N 550 VAL HG12 H N N 551 VAL HG13 H N N 552 VAL HG21 H N N 553 VAL HG22 H N N 554 VAL HG23 H N N 555 VAL HXT H N N 556 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 0OH OAG PBC doub N N 1 0OH OAB PBC sing N N 2 0OH OAF PBC sing N N 3 0OH PBC OAS sing N N 4 0OH OAC PBD doub N N 5 0OH OAH PBD sing N N 6 0OH OAT PBD sing N N 7 0OH OAT PBE sing N N 8 0OH PBD OAR sing N N 9 0OH OAS PBE sing N N 10 0OH PBE OAD doub N N 11 0OH PBE OAI sing N N 12 0OH OAR CAL sing N N 13 0OH CAL CBB sing N N 14 0OH N7 C8 doub Y N 15 0OH N7 C5 sing Y N 16 0OH C8 N9 sing Y N 17 0OH N6 C6 sing N N 18 0OH CBB CAZ sing N N 19 0OH CBB CAX sing N N 20 0OH CBB CAN sing N N 21 0OH C5 C6 doub Y N 22 0OH C5 C4 sing Y N 23 0OH CAZ CAN sing N N 24 0OH CAZ CAY sing N N 25 0OH C6 N1 sing Y N 26 0OH CAX OAE sing N N 27 0OH CAX CAM sing N N 28 0OH N9 C4 sing Y N 29 0OH N9 CAY sing N N 30 0OH C4 N3 doub Y N 31 0OH CAY CAM sing N N 32 0OH N1 C2 doub Y N 33 0OH N3 C2 sing Y N 34 0OH OAF H1 sing N N 35 0OH OAB H2 sing N N 36 0OH OAI H3 sing N N 37 0OH OAH H4 sing N N 38 0OH CAL H5 sing N N 39 0OH CAL H6 sing N N 40 0OH CAZ H7 sing N N 41 0OH CAN H8 sing N N 42 0OH CAN H9 sing N N 43 0OH CAX H10 sing N N 44 0OH OAE H11 sing N N 45 0OH CAM H12 sing N N 46 0OH CAM H13 sing N N 47 0OH CAY H14 sing N N 48 0OH C8 H15 sing N N 49 0OH C2 H16 sing N N 50 0OH N6 H17 sing N N 51 0OH N6 H18 sing N N 52 ALA N CA sing N N 53 ALA N H sing N N 54 ALA N H2 sing N N 55 ALA CA C sing N N 56 ALA CA CB sing N N 57 ALA CA HA sing N N 58 ALA C O doub N N 59 ALA C OXT sing N N 60 ALA CB HB1 sing N N 61 ALA CB HB2 sing N N 62 ALA CB HB3 sing N N 63 ALA OXT HXT sing N N 64 ARG N CA sing N N 65 ARG N H sing N N 66 ARG N H2 sing N N 67 ARG CA C sing N N 68 ARG CA CB sing N N 69 ARG CA HA sing N N 70 ARG C O doub N N 71 ARG C OXT sing N N 72 ARG CB CG sing N N 73 ARG CB HB2 sing N N 74 ARG CB HB3 sing N N 75 ARG CG CD sing N N 76 ARG CG HG2 sing N N 77 ARG CG HG3 sing N N 78 ARG CD NE sing N N 79 ARG CD HD2 sing N N 80 ARG CD HD3 sing N N 81 ARG NE CZ sing N N 82 ARG NE HE sing N N 83 ARG CZ NH1 sing N N 84 ARG CZ NH2 doub N N 85 ARG NH1 HH11 sing N N 86 ARG NH1 HH12 sing N N 87 ARG NH2 HH21 sing N N 88 ARG NH2 HH22 sing N N 89 ARG OXT HXT sing N N 90 ASN N CA sing N N 91 ASN N H sing N N 92 ASN N H2 sing N N 93 ASN CA C sing N N 94 ASN CA CB sing N N 95 ASN CA HA sing N N 96 ASN C O doub N N 97 ASN C OXT sing N N 98 ASN CB CG sing N N 99 ASN CB HB2 sing N N 100 ASN CB HB3 sing N N 101 ASN CG OD1 doub N N 102 ASN CG ND2 sing N N 103 ASN ND2 HD21 sing N N 104 ASN ND2 HD22 sing N N 105 ASN OXT HXT sing N N 106 ASP N CA sing N N 107 ASP N H sing N N 108 ASP N H2 sing N N 109 ASP CA C sing N N 110 ASP CA CB sing N N 111 ASP CA HA sing N N 112 ASP C O doub N N 113 ASP C OXT sing N N 114 ASP CB CG sing N N 115 ASP CB HB2 sing N N 116 ASP CB HB3 sing N N 117 ASP CG OD1 doub N N 118 ASP CG OD2 sing N N 119 ASP OD2 HD2 sing N N 120 ASP OXT HXT sing N N 121 CYS N CA sing N N 122 CYS N H sing N N 123 CYS N H2 sing N N 124 CYS CA C sing N N 125 CYS CA CB sing N N 126 CYS CA HA sing N N 127 CYS C O doub N N 128 CYS C OXT sing N N 129 CYS CB SG sing N N 130 CYS CB HB2 sing N N 131 CYS CB HB3 sing N N 132 CYS SG HG sing N N 133 CYS OXT HXT sing N N 134 DA OP3 P sing N N 135 DA OP3 HOP3 sing N N 136 DA P OP1 doub N N 137 DA P OP2 sing N N 138 DA P "O5'" sing N N 139 DA OP2 HOP2 sing N N 140 DA "O5'" "C5'" sing N N 141 DA "C5'" "C4'" sing N N 142 DA "C5'" "H5'" sing N N 143 DA "C5'" "H5''" sing N N 144 DA "C4'" "O4'" sing N N 145 DA "C4'" "C3'" sing N N 146 DA "C4'" "H4'" sing N N 147 DA "O4'" "C1'" sing N N 148 DA "C3'" "O3'" sing N N 149 DA "C3'" "C2'" sing N N 150 DA "C3'" "H3'" sing N N 151 DA "O3'" "HO3'" sing N N 152 DA "C2'" "C1'" sing N N 153 DA "C2'" "H2'" sing N N 154 DA "C2'" "H2''" sing N N 155 DA "C1'" N9 sing N N 156 DA "C1'" "H1'" sing N N 157 DA N9 C8 sing Y N 158 DA N9 C4 sing Y N 159 DA C8 N7 doub Y N 160 DA C8 H8 sing N N 161 DA N7 C5 sing Y N 162 DA C5 C6 sing Y N 163 DA C5 C4 doub Y N 164 DA C6 N6 sing N N 165 DA C6 N1 doub Y N 166 DA N6 H61 sing N N 167 DA N6 H62 sing N N 168 DA N1 C2 sing Y N 169 DA C2 N3 doub Y N 170 DA C2 H2 sing N N 171 DA N3 C4 sing Y N 172 DC OP3 P sing N N 173 DC OP3 HOP3 sing N N 174 DC P OP1 doub N N 175 DC P OP2 sing N N 176 DC P "O5'" sing N N 177 DC OP2 HOP2 sing N N 178 DC "O5'" "C5'" sing N N 179 DC "C5'" "C4'" sing N N 180 DC "C5'" "H5'" sing N N 181 DC "C5'" "H5''" sing N N 182 DC "C4'" "O4'" sing N N 183 DC "C4'" "C3'" sing N N 184 DC "C4'" "H4'" sing N N 185 DC "O4'" "C1'" sing N N 186 DC "C3'" "O3'" sing N N 187 DC "C3'" "C2'" sing N N 188 DC "C3'" "H3'" sing N N 189 DC "O3'" "HO3'" sing N N 190 DC "C2'" "C1'" sing N N 191 DC "C2'" "H2'" sing N N 192 DC "C2'" "H2''" sing N N 193 DC "C1'" N1 sing N N 194 DC "C1'" "H1'" sing N N 195 DC N1 C2 sing N N 196 DC N1 C6 sing N N 197 DC C2 O2 doub N N 198 DC C2 N3 sing N N 199 DC N3 C4 doub N N 200 DC C4 N4 sing N N 201 DC C4 C5 sing N N 202 DC N4 H41 sing N N 203 DC N4 H42 sing N N 204 DC C5 C6 doub N N 205 DC C5 H5 sing N N 206 DC C6 H6 sing N N 207 DG OP3 P sing N N 208 DG OP3 HOP3 sing N N 209 DG P OP1 doub N N 210 DG P OP2 sing N N 211 DG P "O5'" sing N N 212 DG OP2 HOP2 sing N N 213 DG "O5'" "C5'" sing N N 214 DG "C5'" "C4'" sing N N 215 DG "C5'" "H5'" sing N N 216 DG "C5'" "H5''" sing N N 217 DG "C4'" "O4'" sing N N 218 DG "C4'" "C3'" sing N N 219 DG "C4'" "H4'" sing N N 220 DG "O4'" "C1'" sing N N 221 DG "C3'" "O3'" sing N N 222 DG "C3'" "C2'" sing N N 223 DG "C3'" "H3'" sing N N 224 DG "O3'" "HO3'" sing N N 225 DG "C2'" "C1'" sing N N 226 DG "C2'" "H2'" sing N N 227 DG "C2'" "H2''" sing N N 228 DG "C1'" N9 sing N N 229 DG "C1'" "H1'" sing N N 230 DG N9 C8 sing Y N 231 DG N9 C4 sing Y N 232 DG C8 N7 doub Y N 233 DG C8 H8 sing N N 234 DG N7 C5 sing Y N 235 DG C5 C6 sing N N 236 DG C5 C4 doub Y N 237 DG C6 O6 doub N N 238 DG C6 N1 sing N N 239 DG N1 C2 sing N N 240 DG N1 H1 sing N N 241 DG C2 N2 sing N N 242 DG C2 N3 doub N N 243 DG N2 H21 sing N N 244 DG N2 H22 sing N N 245 DG N3 C4 sing N N 246 DT OP3 P sing N N 247 DT OP3 HOP3 sing N N 248 DT P OP1 doub N N 249 DT P OP2 sing N N 250 DT P "O5'" sing N N 251 DT OP2 HOP2 sing N N 252 DT "O5'" "C5'" sing N N 253 DT "C5'" "C4'" sing N N 254 DT "C5'" "H5'" sing N N 255 DT "C5'" "H5''" sing N N 256 DT "C4'" "O4'" sing N N 257 DT "C4'" "C3'" sing N N 258 DT "C4'" "H4'" sing N N 259 DT "O4'" "C1'" sing N N 260 DT "C3'" "O3'" sing N N 261 DT "C3'" "C2'" sing N N 262 DT "C3'" "H3'" sing N N 263 DT "O3'" "HO3'" sing N N 264 DT "C2'" "C1'" sing N N 265 DT "C2'" "H2'" sing N N 266 DT "C2'" "H2''" sing N N 267 DT "C1'" N1 sing N N 268 DT "C1'" "H1'" sing N N 269 DT N1 C2 sing N N 270 DT N1 C6 sing N N 271 DT C2 O2 doub N N 272 DT C2 N3 sing N N 273 DT N3 C4 sing N N 274 DT N3 H3 sing N N 275 DT C4 O4 doub N N 276 DT C4 C5 sing N N 277 DT C5 C7 sing N N 278 DT C5 C6 doub N N 279 DT C7 H71 sing N N 280 DT C7 H72 sing N N 281 DT C7 H73 sing N N 282 DT C6 H6 sing N N 283 GLN N CA sing N N 284 GLN N H sing N N 285 GLN N H2 sing N N 286 GLN CA C sing N N 287 GLN CA CB sing N N 288 GLN CA HA sing N N 289 GLN C O doub N N 290 GLN C OXT sing N N 291 GLN CB CG sing N N 292 GLN CB HB2 sing N N 293 GLN CB HB3 sing N N 294 GLN CG CD sing N N 295 GLN CG HG2 sing N N 296 GLN CG HG3 sing N N 297 GLN CD OE1 doub N N 298 GLN CD NE2 sing N N 299 GLN NE2 HE21 sing N N 300 GLN NE2 HE22 sing N N 301 GLN OXT HXT sing N N 302 GLU N CA sing N N 303 GLU N H sing N N 304 GLU N H2 sing N N 305 GLU CA C sing N N 306 GLU CA CB sing N N 307 GLU CA HA sing N N 308 GLU C O doub N N 309 GLU C OXT sing N N 310 GLU CB CG sing N N 311 GLU CB HB2 sing N N 312 GLU CB HB3 sing N N 313 GLU CG CD sing N N 314 GLU CG HG2 sing N N 315 GLU CG HG3 sing N N 316 GLU CD OE1 doub N N 317 GLU CD OE2 sing N N 318 GLU OE2 HE2 sing N N 319 GLU OXT HXT sing N N 320 GLY N CA sing N N 321 GLY N H sing N N 322 GLY N H2 sing N N 323 GLY CA C sing N N 324 GLY CA HA2 sing N N 325 GLY CA HA3 sing N N 326 GLY C O doub N N 327 GLY C OXT sing N N 328 GLY OXT HXT sing N N 329 HIS N CA sing N N 330 HIS N H sing N N 331 HIS N H2 sing N N 332 HIS CA C sing N N 333 HIS CA CB sing N N 334 HIS CA HA sing N N 335 HIS C O doub N N 336 HIS C OXT sing N N 337 HIS CB CG sing N N 338 HIS CB HB2 sing N N 339 HIS CB HB3 sing N N 340 HIS CG ND1 sing Y N 341 HIS CG CD2 doub Y N 342 HIS ND1 CE1 doub Y N 343 HIS ND1 HD1 sing N N 344 HIS CD2 NE2 sing Y N 345 HIS CD2 HD2 sing N N 346 HIS CE1 NE2 sing Y N 347 HIS CE1 HE1 sing N N 348 HIS NE2 HE2 sing N N 349 HIS OXT HXT sing N N 350 HOH O H1 sing N N 351 HOH O H2 sing N N 352 ILE N CA sing N N 353 ILE N H sing N N 354 ILE N H2 sing N N 355 ILE CA C sing N N 356 ILE CA CB sing N N 357 ILE CA HA sing N N 358 ILE C O doub N N 359 ILE C OXT sing N N 360 ILE CB CG1 sing N N 361 ILE CB CG2 sing N N 362 ILE CB HB sing N N 363 ILE CG1 CD1 sing N N 364 ILE CG1 HG12 sing N N 365 ILE CG1 HG13 sing N N 366 ILE CG2 HG21 sing N N 367 ILE CG2 HG22 sing N N 368 ILE CG2 HG23 sing N N 369 ILE CD1 HD11 sing N N 370 ILE CD1 HD12 sing N N 371 ILE CD1 HD13 sing N N 372 ILE OXT HXT sing N N 373 LEU N CA sing N N 374 LEU N H sing N N 375 LEU N H2 sing N N 376 LEU CA C sing N N 377 LEU CA CB sing N N 378 LEU CA HA sing N N 379 LEU C O doub N N 380 LEU C OXT sing N N 381 LEU CB CG sing N N 382 LEU CB HB2 sing N N 383 LEU CB HB3 sing N N 384 LEU CG CD1 sing N N 385 LEU CG CD2 sing N N 386 LEU CG HG sing N N 387 LEU CD1 HD11 sing N N 388 LEU CD1 HD12 sing N N 389 LEU CD1 HD13 sing N N 390 LEU CD2 HD21 sing N N 391 LEU CD2 HD22 sing N N 392 LEU CD2 HD23 sing N N 393 LEU OXT HXT sing N N 394 LYS N CA sing N N 395 LYS N H sing N N 396 LYS N H2 sing N N 397 LYS CA C sing N N 398 LYS CA CB sing N N 399 LYS CA HA sing N N 400 LYS C O doub N N 401 LYS C OXT sing N N 402 LYS CB CG sing N N 403 LYS CB HB2 sing N N 404 LYS CB HB3 sing N N 405 LYS CG CD sing N N 406 LYS CG HG2 sing N N 407 LYS CG HG3 sing N N 408 LYS CD CE sing N N 409 LYS CD HD2 sing N N 410 LYS CD HD3 sing N N 411 LYS CE NZ sing N N 412 LYS CE HE2 sing N N 413 LYS CE HE3 sing N N 414 LYS NZ HZ1 sing N N 415 LYS NZ HZ2 sing N N 416 LYS NZ HZ3 sing N N 417 LYS OXT HXT sing N N 418 MET N CA sing N N 419 MET N H sing N N 420 MET N H2 sing N N 421 MET CA C sing N N 422 MET CA CB sing N N 423 MET CA HA sing N N 424 MET C O doub N N 425 MET C OXT sing N N 426 MET CB CG sing N N 427 MET CB HB2 sing N N 428 MET CB HB3 sing N N 429 MET CG SD sing N N 430 MET CG HG2 sing N N 431 MET CG HG3 sing N N 432 MET SD CE sing N N 433 MET CE HE1 sing N N 434 MET CE HE2 sing N N 435 MET CE HE3 sing N N 436 MET OXT HXT sing N N 437 PHE N CA sing N N 438 PHE N H sing N N 439 PHE N H2 sing N N 440 PHE CA C sing N N 441 PHE CA CB sing N N 442 PHE CA HA sing N N 443 PHE C O doub N N 444 PHE C OXT sing N N 445 PHE CB CG sing N N 446 PHE CB HB2 sing N N 447 PHE CB HB3 sing N N 448 PHE CG CD1 doub Y N 449 PHE CG CD2 sing Y N 450 PHE CD1 CE1 sing Y N 451 PHE CD1 HD1 sing N N 452 PHE CD2 CE2 doub Y N 453 PHE CD2 HD2 sing N N 454 PHE CE1 CZ doub Y N 455 PHE CE1 HE1 sing N N 456 PHE CE2 CZ sing Y N 457 PHE CE2 HE2 sing N N 458 PHE CZ HZ sing N N 459 PHE OXT HXT sing N N 460 PRO N CA sing N N 461 PRO N CD sing N N 462 PRO N H sing N N 463 PRO CA C sing N N 464 PRO CA CB sing N N 465 PRO CA HA sing N N 466 PRO C O doub N N 467 PRO C OXT sing N N 468 PRO CB CG sing N N 469 PRO CB HB2 sing N N 470 PRO CB HB3 sing N N 471 PRO CG CD sing N N 472 PRO CG HG2 sing N N 473 PRO CG HG3 sing N N 474 PRO CD HD2 sing N N 475 PRO CD HD3 sing N N 476 PRO OXT HXT sing N N 477 SER N CA sing N N 478 SER N H sing N N 479 SER N H2 sing N N 480 SER CA C sing N N 481 SER CA CB sing N N 482 SER CA HA sing N N 483 SER C O doub N N 484 SER C OXT sing N N 485 SER CB OG sing N N 486 SER CB HB2 sing N N 487 SER CB HB3 sing N N 488 SER OG HG sing N N 489 SER OXT HXT sing N N 490 THR N CA sing N N 491 THR N H sing N N 492 THR N H2 sing N N 493 THR CA C sing N N 494 THR CA CB sing N N 495 THR CA HA sing N N 496 THR C O doub N N 497 THR C OXT sing N N 498 THR CB OG1 sing N N 499 THR CB CG2 sing N N 500 THR CB HB sing N N 501 THR OG1 HG1 sing N N 502 THR CG2 HG21 sing N N 503 THR CG2 HG22 sing N N 504 THR CG2 HG23 sing N N 505 THR OXT HXT sing N N 506 TYR N CA sing N N 507 TYR N H sing N N 508 TYR N H2 sing N N 509 TYR CA C sing N N 510 TYR CA CB sing N N 511 TYR CA HA sing N N 512 TYR C O doub N N 513 TYR C OXT sing N N 514 TYR CB CG sing N N 515 TYR CB HB2 sing N N 516 TYR CB HB3 sing N N 517 TYR CG CD1 doub Y N 518 TYR CG CD2 sing Y N 519 TYR CD1 CE1 sing Y N 520 TYR CD1 HD1 sing N N 521 TYR CD2 CE2 doub Y N 522 TYR CD2 HD2 sing N N 523 TYR CE1 CZ doub Y N 524 TYR CE1 HE1 sing N N 525 TYR CE2 CZ sing Y N 526 TYR CE2 HE2 sing N N 527 TYR CZ OH sing N N 528 TYR OH HH sing N N 529 TYR OXT HXT sing N N 530 VAL N CA sing N N 531 VAL N H sing N N 532 VAL N H2 sing N N 533 VAL CA C sing N N 534 VAL CA CB sing N N 535 VAL CA HA sing N N 536 VAL C O doub N N 537 VAL C OXT sing N N 538 VAL CB CG1 sing N N 539 VAL CB CG2 sing N N 540 VAL CB HB sing N N 541 VAL CG1 HG11 sing N N 542 VAL CG1 HG12 sing N N 543 VAL CG1 HG13 sing N N 544 VAL CG2 HG21 sing N N 545 VAL CG2 HG22 sing N N 546 VAL CG2 HG23 sing N N 547 VAL OXT HXT sing N N 548 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 4GC6 'double helix' 4GC6 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DG 1 1_555 C DC 18 1_555 -0.368 -0.531 -0.331 -8.398 -9.336 -5.907 1 P_DG1:DC18_T P 1 ? T 18 ? 19 1 1 B DG 2 1_555 C DC 17 1_555 -0.722 -0.213 -0.071 -2.977 -11.285 11.603 2 P_DG2:DC17_T P 2 ? T 17 ? 19 1 1 B DG 3 1_555 C DC 16 1_555 -0.261 -0.524 -0.162 -3.493 -14.593 -2.325 3 P_DG3:DC16_T P 3 ? T 16 ? 19 1 1 B DG 4 1_555 C DC 15 1_555 -0.327 -0.453 0.410 2.318 -11.712 0.164 4 P_DG4:DC15_T P 4 ? T 15 ? 19 1 1 B DG 5 1_555 C DC 14 1_555 1.035 -0.234 0.183 0.491 -10.461 0.385 5 P_DG5:DC14_T P 5 ? T 14 ? 19 1 1 B DA 6 1_555 C DT 13 1_555 0.797 -0.432 -0.265 -6.203 -13.543 -7.779 6 P_DA6:DT13_T P 6 ? T 13 ? 20 1 1 B DA 7 1_555 C DT 12 1_555 0.908 -0.234 0.055 -1.408 -6.693 3.794 7 P_DA7:DT12_T P 7 ? T 12 ? 20 1 1 B DG 8 1_555 C DC 11 1_555 0.455 -0.218 0.353 -2.606 -15.889 6.061 8 P_DG8:DC11_T P 8 ? T 11 ? 19 1 1 B DG 9 1_555 C DC 10 1_555 -0.792 -0.243 0.424 -7.648 -15.659 3.025 9 P_DG9:DC10_T P 9 ? T 10 ? 19 1 1 B DA 10 1_555 C DT 9 1_555 0.224 -0.312 0.269 -8.319 -17.065 11.203 10 P_DA10:DT9_T P 10 ? T 9 ? 20 1 1 B DT 11 1_555 C DA 8 1_555 0.547 -0.350 0.251 -2.761 -12.478 7.275 11 P_DT11:DA8_T P 11 ? T 8 ? 20 1 1 B DT 12 1_555 C DA 7 1_555 -0.688 -0.117 0.104 3.587 -19.197 9.943 12 P_DT12:DA7_T P 12 ? T 7 ? 20 1 1 B DC 13 1_555 C DG 6 1_555 -0.243 -0.141 -0.236 9.172 -12.512 1.850 13 P_DC13:DG6_T P 13 ? T 6 ? 19 1 1 B DC 14 1_555 C DG 5 1_555 -0.962 -0.094 -0.294 2.891 -2.693 -5.063 14 P_DC14:DG5_T P 14 ? T 5 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B DG 1 1_555 C DC 18 1_555 B DG 2 1_555 C DC 17 1_555 0.832 -0.363 3.335 0.782 3.026 29.000 -1.391 -1.478 3.302 6.020 -1.556 29.164 1 PP_DG1DG2:DC17DC18_TT P 1 ? T 18 ? P 2 ? T 17 ? 1 B DG 2 1_555 C DC 17 1_555 B DG 3 1_555 C DC 16 1_555 -1.705 0.061 3.402 -3.843 5.450 32.238 -0.891 2.307 3.539 9.685 6.829 32.902 2 PP_DG2DG3:DC16DC17_TT P 2 ? T 17 ? P 3 ? T 16 ? 1 B DG 3 1_555 C DC 16 1_555 B DG 4 1_555 C DC 15 1_555 0.570 0.074 3.160 -3.455 4.923 28.387 -0.893 -1.867 3.040 9.898 6.946 29.004 3 PP_DG3DG4:DC15DC16_TT P 3 ? T 16 ? P 4 ? T 15 ? 1 B DG 4 1_555 C DC 15 1_555 B DG 5 1_555 C DC 14 1_555 -0.052 -0.617 3.334 2.658 8.697 39.213 -1.885 0.378 3.123 12.751 -3.897 40.213 4 PP_DG4DG5:DC14DC15_TT P 4 ? T 15 ? P 5 ? T 14 ? 1 B DG 5 1_555 C DC 14 1_555 B DA 6 1_555 C DT 13 1_555 -0.455 -0.657 3.389 4.980 2.859 29.480 -1.865 1.918 3.194 5.551 -9.670 30.022 5 PP_DG5DA6:DT13DC14_TT P 5 ? T 14 ? P 6 ? T 13 ? 1 B DA 6 1_555 C DT 13 1_555 B DA 7 1_555 C DT 12 1_555 0.323 -0.452 3.091 -0.500 8.090 32.293 -2.045 -0.641 2.891 14.266 0.882 33.269 6 PP_DA6DA7:DT12DT13_TT P 6 ? T 13 ? P 7 ? T 12 ? 1 B DA 7 1_555 C DT 12 1_555 B DG 8 1_555 C DC 11 1_555 -0.018 -0.136 3.262 -1.647 8.741 33.076 -1.601 -0.228 3.123 15.018 2.830 34.218 7 PP_DA7DG8:DC11DT12_TT P 7 ? T 12 ? P 8 ? T 11 ? 1 B DG 8 1_555 C DC 11 1_555 B DG 9 1_555 C DC 10 1_555 0.124 -0.849 3.384 1.871 2.595 26.065 -2.584 0.244 3.286 5.726 -4.128 26.258 8 PP_DG8DG9:DC10DC11_TT P 8 ? T 11 ? P 9 ? T 10 ? 1 B DG 9 1_555 C DC 10 1_555 B DA 10 1_555 C DT 9 1_555 0.013 -0.271 3.533 2.255 -2.720 40.678 -0.065 0.250 3.539 -3.903 -3.236 40.825 9 PP_DG9DA10:DT9DC10_TT P 9 ? T 10 ? P 10 ? T 9 ? 1 B DA 10 1_555 C DT 9 1_555 B DT 11 1_555 C DA 8 1_555 0.049 -0.305 3.233 0.902 3.493 29.873 -1.290 0.087 3.178 6.744 -1.741 30.086 10 PP_DA10DT11:DA8DT9_TT P 10 ? T 9 ? P 11 ? T 8 ? 1 B DT 11 1_555 C DA 8 1_555 B DT 12 1_555 C DA 7 1_555 0.523 -0.585 3.043 2.421 4.615 27.463 -2.224 -0.553 2.942 9.610 -5.041 27.944 11 PP_DT11DT12:DA7DA8_TT P 11 ? T 8 ? P 12 ? T 7 ? 1 B DT 12 1_555 C DA 7 1_555 B DC 13 1_555 C DG 6 1_555 -0.430 -0.230 3.396 -1.410 6.654 30.946 -1.693 0.518 3.292 12.286 2.604 31.667 12 PP_DT12DC13:DG6DA7_TT P 12 ? T 7 ? P 13 ? T 6 ? 1 B DC 13 1_555 C DG 6 1_555 B DC 14 1_555 C DG 5 1_555 -0.171 -0.797 3.436 -1.780 10.699 27.500 -3.863 -0.046 2.932 21.477 3.573 29.523 13 PP_DC13DC14:DG5DG6_TT P 13 ? T 6 ? P 14 ? T 5 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 ;North-methanocarba-2'-deoxyadenosine triphosphate ; 0OH 5 'CALCIUM ION' CA 6 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2J6S _pdbx_initial_refinement_model.details ? #