HEADER TRANSFERASE 02-AUG-12 4GEK TITLE CRYSTAL STRUCTURE OF WILD-TYPE CMOA FROM E.COLI COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRNA (CMO5U34)-METHYLTRANSFERASE; COMPND 3 CHAIN: A, G; COMPND 4 EC: 2.1.1.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 511145; SOURCE 4 STRAIN: K-12 SUBSTR. MG1655; SOURCE 5 GENE: CMOA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: LIC PET46A KEYWDS STRUCTURAL GENOMICS, PSI-BIOLOGY, NEW YORK STRUCTURAL GENOMICS KEYWDS 2 RESEARCH CONSORTIUM, NYSGRC, ROSSMANN FOLD, SYNTHASE, SAM KEYWDS 3 PREPHENATE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.KIM,R.TORO,J.B.BONANNO,R.BHOSLE,P.SAMPATHKUMAR,S.C.ALMO,NEW YORK AUTHOR 2 STRUCTURAL GENOMICS RESEARCH CONSORTIUM (NYSGRC) REVDAT 7 13-SEP-23 4GEK 1 COMPND REMARK HETNAM REVDAT 6 15-NOV-17 4GEK 1 REMARK REVDAT 5 19-JUN-13 4GEK 1 HETNAM REVDAT 4 12-JUN-13 4GEK 1 DBREF SOURCE JRNL REVDAT 3 29-MAY-13 4GEK 1 JRNL REVDAT 2 15-MAY-13 4GEK 1 JRNL REVDAT 1 10-OCT-12 4GEK 0 JRNL AUTH J.KIM,H.XIAO,J.B.BONANNO,C.KALYANARAMAN,S.BROWN,X.TANG, JRNL AUTH 2 N.F.AL-OBAIDI,Y.PATSKOVSKY,P.C.BABBITT,M.P.JACOBSON, JRNL AUTH 3 Y.-S.LEE,S.C.ALMO JRNL TITL STRUCTURE-GUIDED DISCOVERY OF THE METABOLITE CARBOXY-SAM JRNL TITL 2 THAT MODULATES TRNA FUNCTION JRNL REF NATURE V. 498 123 2013 JRNL REFN ISSN 0028-0836 JRNL PMID 23676670 JRNL DOI 10.1038/NATURE12180 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0025 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.18 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 72966 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.203 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3858 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5333 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.91 REMARK 3 BIN R VALUE (WORKING SET) : 0.2260 REMARK 3 BIN FREE R VALUE SET COUNT : 273 REMARK 3 BIN FREE R VALUE : 0.2590 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3641 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 75 REMARK 3 SOLVENT ATOMS : 489 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.35 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.22000 REMARK 3 B22 (A**2) : 0.85000 REMARK 3 B33 (A**2) : -0.63000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.073 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.075 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.045 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.185 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.958 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3935 ; 0.018 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5348 ; 1.494 ; 1.972 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 496 ; 5.796 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 190 ;34.845 ;24.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 683 ;13.193 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 29 ;21.050 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 588 ; 0.110 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3009 ; 0.015 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4GEK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-AUG-12. REMARK 100 THE DEPOSITION ID IS D_1000074084. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-MAR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9790 REMARK 200 MONOCHROMATOR : DOUBLE SILICON(111) CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 76870 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.06100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 29.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1IM8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M LI2SO4, 0.1M BIS-TRIS:HCL PH 5.5, REMARK 280 25% PEG3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 32.65700 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.33850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.65700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.33850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18980 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -66.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -13 REMARK 465 ALA A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 VAL A -5 REMARK 465 ASP A -4 REMARK 465 ASP A -3 REMARK 465 ASP A -2 REMARK 465 ASP A -1 REMARK 465 LYS A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 HIS A 3 REMARK 465 ARG A 4 REMARK 465 ASP A 5 REMARK 465 THR A 6 REMARK 465 LEU A 7 REMARK 465 PHE A 8 REMARK 465 SER A 9 REMARK 465 ALA A 10 REMARK 465 PRO A 11 REMARK 465 ILE A 12 REMARK 465 ALA A 13 REMARK 465 ARG A 14 REMARK 465 LEU A 15 REMARK 465 GLY A 16 REMARK 465 ASP A 17 REMARK 465 MET G -13 REMARK 465 ALA G -12 REMARK 465 HIS G -11 REMARK 465 HIS G -10 REMARK 465 HIS G -9 REMARK 465 HIS G -8 REMARK 465 HIS G -7 REMARK 465 HIS G -6 REMARK 465 VAL G -5 REMARK 465 ASP G -4 REMARK 465 ASP G -3 REMARK 465 ASP G -2 REMARK 465 ASP G -1 REMARK 465 LYS G 0 REMARK 465 MET G 1 REMARK 465 SER G 2 REMARK 465 HIS G 3 REMARK 465 ARG G 4 REMARK 465 ASP G 5 REMARK 465 THR G 6 REMARK 465 LEU G 7 REMARK 465 PHE G 8 REMARK 465 SER G 9 REMARK 465 ALA G 10 REMARK 465 PRO G 11 REMARK 465 ILE G 12 REMARK 465 ALA G 13 REMARK 465 ARG G 14 REMARK 465 ALA G 246 REMARK 465 ALA G 247 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 22 CG CD OE1 OE2 REMARK 470 LEU G 15 CG CD1 CD2 REMARK 470 ASP G 17 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET G 201 CG - SD - CE ANGL. DEV. = 10.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 66 -119.50 54.32 REMARK 500 GLU A 227 148.18 -171.04 REMARK 500 PHE A 233 -126.27 54.04 REMARK 500 SER G 66 -118.95 52.92 REMARK 500 PHE G 233 -128.33 55.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GEK A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 G 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 G 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GEK G 303 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGRC-012601 RELATED DB: TARGETTRACK DBREF 4GEK A -13 247 PDB 4GEK 4GEK -13 247 DBREF 4GEK G -13 247 PDB 4GEK 4GEK -13 247 SEQRES 1 A 261 MET ALA HIS HIS HIS HIS HIS HIS VAL ASP ASP ASP ASP SEQRES 2 A 261 LYS MET SER HIS ARG ASP THR LEU PHE SER ALA PRO ILE SEQRES 3 A 261 ALA ARG LEU GLY ASP TRP THR PHE ASP GLU ARG VAL ALA SEQRES 4 A 261 GLU VAL PHE PRO ASP MET ILE GLN ARG SER VAL PRO GLY SEQRES 5 A 261 TYR SER ASN ILE ILE SER MET ILE GLY MET LEU ALA GLU SEQRES 6 A 261 ARG PHE VAL GLN PRO GLY THR GLN VAL TYR ASP LEU GLY SEQRES 7 A 261 CYS SER LEU GLY ALA ALA THR LEU SER VAL ARG ARG ASN SEQRES 8 A 261 ILE HIS HIS ASP ASN CYS LYS ILE ILE ALA ILE ASP ASN SEQRES 9 A 261 SER PRO ALA MET ILE GLU ARG CYS ARG ARG HIS ILE ASP SEQRES 10 A 261 ALA TYR LYS ALA PRO THR PRO VAL ASP VAL ILE GLU GLY SEQRES 11 A 261 ASP ILE ARG ASP ILE ALA ILE GLU ASN ALA SER MET VAL SEQRES 12 A 261 VAL LEU ASN PHE THR LEU GLN PHE LEU GLU PRO SER GLU SEQRES 13 A 261 ARG GLN ALA LEU LEU ASP LYS ILE TYR GLN GLY LEU ASN SEQRES 14 A 261 PRO GLY GLY ALA LEU VAL LEU SER GLU LYS PHE SER PHE SEQRES 15 A 261 GLU ASP ALA LYS VAL GLY GLU LEU LEU PHE ASN MET HIS SEQRES 16 A 261 HIS ASP PHE LYS ARG ALA ASN GLY TYR SER GLU LEU GLU SEQRES 17 A 261 ILE SER GLN LYS ARG SER MET LEU GLU ASN VAL MET LEU SEQRES 18 A 261 THR ASP SER VAL GLU THR HIS LYS ALA ARG LEU HIS LYS SEQRES 19 A 261 ALA GLY PHE GLU HIS SER GLU LEU TRP PHE GLN CYS PHE SEQRES 20 A 261 ASN PHE GLY SER LEU VAL ALA LEU LYS ALA GLU ASP ALA SEQRES 21 A 261 ALA SEQRES 1 G 261 MET ALA HIS HIS HIS HIS HIS HIS VAL ASP ASP ASP ASP SEQRES 2 G 261 LYS MET SER HIS ARG ASP THR LEU PHE SER ALA PRO ILE SEQRES 3 G 261 ALA ARG LEU GLY ASP TRP THR PHE ASP GLU ARG VAL ALA SEQRES 4 G 261 GLU VAL PHE PRO ASP MET ILE GLN ARG SER VAL PRO GLY SEQRES 5 G 261 TYR SER ASN ILE ILE SER MET ILE GLY MET LEU ALA GLU SEQRES 6 G 261 ARG PHE VAL GLN PRO GLY THR GLN VAL TYR ASP LEU GLY SEQRES 7 G 261 CYS SER LEU GLY ALA ALA THR LEU SER VAL ARG ARG ASN SEQRES 8 G 261 ILE HIS HIS ASP ASN CYS LYS ILE ILE ALA ILE ASP ASN SEQRES 9 G 261 SER PRO ALA MET ILE GLU ARG CYS ARG ARG HIS ILE ASP SEQRES 10 G 261 ALA TYR LYS ALA PRO THR PRO VAL ASP VAL ILE GLU GLY SEQRES 11 G 261 ASP ILE ARG ASP ILE ALA ILE GLU ASN ALA SER MET VAL SEQRES 12 G 261 VAL LEU ASN PHE THR LEU GLN PHE LEU GLU PRO SER GLU SEQRES 13 G 261 ARG GLN ALA LEU LEU ASP LYS ILE TYR GLN GLY LEU ASN SEQRES 14 G 261 PRO GLY GLY ALA LEU VAL LEU SER GLU LYS PHE SER PHE SEQRES 15 G 261 GLU ASP ALA LYS VAL GLY GLU LEU LEU PHE ASN MET HIS SEQRES 16 G 261 HIS ASP PHE LYS ARG ALA ASN GLY TYR SER GLU LEU GLU SEQRES 17 G 261 ILE SER GLN LYS ARG SER MET LEU GLU ASN VAL MET LEU SEQRES 18 G 261 THR ASP SER VAL GLU THR HIS LYS ALA ARG LEU HIS LYS SEQRES 19 G 261 ALA GLY PHE GLU HIS SER GLU LEU TRP PHE GLN CYS PHE SEQRES 20 G 261 ASN PHE GLY SER LEU VAL ALA LEU LYS ALA GLU ASP ALA SEQRES 21 G 261 ALA HET SO4 A 301 5 HET GEK A 302 30 HET SO4 G 301 5 HET SO4 G 302 5 HET GEK G 303 30 HETNAM SO4 SULFATE ION HETNAM GEK (2S)-4-[{[(2S,3S,4R,5R)-5-(6-AMINO-9H-PURIN-9-YL)-3,4- HETNAM 2 GEK DIHYDROXYTETRAHYDROFURAN-2- HETNAM 3 GEK YL]METHYL}(CARBOXYLATOMETHYL)SULFONIO] -2- HETNAM 4 GEK AMMONIOBUTANOATE HETSYN GEK CARBOXY-S-ADENOSYLMETHIONINE FORMUL 3 SO4 3(O4 S 2-) FORMUL 4 GEK 2(C16 H22 N6 O7 S) FORMUL 8 HOH *489(H2 O) HELIX 1 1 ASP A 21 VAL A 36 1 16 HELIX 2 2 GLY A 38 VAL A 54 1 17 HELIX 3 3 GLY A 68 ASN A 77 1 10 HELIX 4 4 SER A 91 ALA A 104 1 14 HELIX 5 5 THR A 134 LEU A 138 5 5 HELIX 6 6 GLU A 139 SER A 141 5 3 HELIX 7 7 GLU A 142 GLY A 153 1 12 HELIX 8 8 ASP A 170 ASN A 188 1 19 HELIX 9 9 GLY A 189 GLU A 194 5 6 HELIX 10 10 ILE A 195 MET A 206 1 12 HELIX 11 11 SER A 210 GLY A 222 1 13 HELIX 12 12 ASP G 21 VAL G 36 1 16 HELIX 13 13 GLY G 38 VAL G 54 1 17 HELIX 14 14 GLY G 68 ASN G 77 1 10 HELIX 15 15 SER G 91 ALA G 104 1 14 HELIX 16 16 THR G 134 LEU G 138 5 5 HELIX 17 17 GLU G 139 SER G 141 5 3 HELIX 18 18 GLU G 142 GLY G 153 1 12 HELIX 19 19 ASP G 170 ASN G 188 1 19 HELIX 20 20 GLY G 189 GLU G 194 5 6 HELIX 21 21 ILE G 195 MET G 206 1 12 HELIX 22 22 SER G 210 GLY G 222 1 13 SHEET 1 A14 VAL A 111 GLU A 115 0 SHEET 2 A14 LYS A 84 ASP A 89 1 N ALA A 87 O ILE A 114 SHEET 3 A14 GLN A 59 LEU A 63 1 N VAL A 60 O ILE A 86 SHEET 4 A14 ALA A 126 ASN A 132 1 O VAL A 130 N LEU A 63 SHEET 5 A14 LEU A 154 LYS A 165 1 O VAL A 161 N LEU A 131 SHEET 6 A14 PHE A 235 LEU A 241 -1 O LEU A 238 N LEU A 162 SHEET 7 A14 HIS A 225 CYS A 232 -1 N CYS A 232 O PHE A 235 SHEET 8 A14 HIS G 225 CYS G 232 -1 O GLN G 231 N GLN A 231 SHEET 9 A14 PHE G 235 LEU G 241 -1 O PHE G 235 N CYS G 232 SHEET 10 A14 LEU G 154 LYS G 165 -1 N LEU G 162 O LEU G 238 SHEET 11 A14 ALA G 126 ASN G 132 1 N LEU G 131 O VAL G 161 SHEET 12 A14 GLN G 59 LEU G 63 1 N TYR G 61 O VAL G 130 SHEET 13 A14 LYS G 84 ASP G 89 1 O ILE G 86 N VAL G 60 SHEET 14 A14 VAL G 111 GLU G 115 1 O ILE G 114 N ALA G 87 SITE 1 AC1 8 ALA A 69 ARG A 76 HIS A 101 HOH A 419 SITE 2 AC1 8 HOH A 446 HOH A 451 HOH A 582 HOH A 588 SITE 1 AC2 23 PHE A 20 PHE A 28 TYR A 39 GLY A 64 SITE 2 AC2 23 SER A 66 ASP A 89 ASN A 90 SER A 91 SITE 3 AC2 23 MET A 94 GLY A 116 ASP A 117 ILE A 118 SITE 4 AC2 23 ASN A 132 PHE A 133 PHE A 137 LEU A 138 SITE 5 AC2 23 ARG A 199 HOH A 401 HOH A 403 HOH A 406 SITE 6 AC2 23 HOH A 417 HOH A 444 HOH A 610 SITE 1 AC3 5 LYS A 172 HIS G 225 ALA G 243 GLU G 244 SITE 2 AC3 5 HOH G 546 SITE 1 AC4 7 ALA G 69 ARG G 76 HIS G 101 HOH G 423 SITE 2 AC4 7 HOH G 429 HOH G 525 HOH G 561 SITE 1 AC5 23 PHE G 20 PHE G 28 TYR G 39 GLY G 64 SITE 2 AC5 23 SER G 66 ASP G 89 ASN G 90 SER G 91 SITE 3 AC5 23 MET G 94 GLY G 116 ASP G 117 ILE G 118 SITE 4 AC5 23 ASN G 132 PHE G 133 PHE G 137 LEU G 138 SITE 5 AC5 23 ARG G 199 HOH G 401 HOH G 402 HOH G 405 SITE 6 AC5 23 HOH G 414 HOH G 563 HOH G 585 CRYST1 65.314 78.677 92.372 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015311 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012710 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010826 0.00000 MTRIX1 1 1.000000 0.000000 0.000000 0.00000 1 MTRIX2 1 0.000000 1.000000 0.000000 0.00000 1 MTRIX3 1 0.000000 0.000000 1.000000 0.00000 1 MTRIX1 2 -0.985300 0.170628 -0.008368 -0.24197 1 MTRIX2 2 0.170545 0.985301 0.009822 0.30161 1 MTRIX3 2 0.009920 0.008250 -0.999917 -46.17250 1