HEADER ISOMERASE 06-AUG-12 4GGB TITLE CRYSTAL STRUCTURE OF A PROPOSED GALACTAROLACTONE CYCLOISOMERASE FROM TITLE 2 AGROBACTERIUM TUMEFACIENS, TARGET EFI-500704, WITH BOUND CA, TITLE 3 DISORDERED LOOPS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AGROBACTERIUM TUMEFACIENS; SOURCE 3 ORGANISM_TAXID: 176299; SOURCE 4 STRAIN: C58; SOURCE 5 GENE: ATU3139; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS ENOLASE, PROPOSED GALACTAROLACTONE CYCLOISOMERASE, ENZYME FUNCTION KEYWDS 2 INITIATIVE, EFI, STRUCTURAL GENOMICS, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.W.VETTING,J.T.BOUVIER,L.L.MORISCO,S.R.WASSERMAN,S.SOJITRA, AUTHOR 2 H.J.IMKER,J.A.GERLT,S.C.ALMO,ENZYME FUNCTION INITIATIVE (EFI) REVDAT 4 13-SEP-23 4GGB 1 REMARK LINK REVDAT 3 27-JUL-16 4GGB 1 JRNL REVDAT 2 22-JUN-16 4GGB 1 JRNL REVDAT 1 29-AUG-12 4GGB 0 JRNL AUTH M.W.VETTING,J.T.BOUVIER,J.A.GERLT,S.C.ALMO JRNL TITL PURIFICATION, CRYSTALLIZATION AND STRUCTURAL ELUCIDATION OF JRNL TITL 2 D-GALACTARO-1,4-LACTONE CYCLOISOMERASE FROM AGROBACTERIUM JRNL TITL 3 TUMEFACIENS INVOLVED IN PECTIN DEGRADATION. JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 72 36 2016 JRNL REFN ESSN 2053-230X JRNL PMID 26750482 JRNL DOI 10.1107/S2053230X15023286 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8_1069 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.70 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 28435 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.090 REMARK 3 FREE R VALUE TEST SET COUNT : 1446 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.7044 - 4.3071 0.97 2821 152 0.1770 0.1740 REMARK 3 2 4.3071 - 3.4194 0.97 2699 140 0.1693 0.1977 REMARK 3 3 3.4194 - 2.9873 0.97 2635 164 0.1967 0.2537 REMARK 3 4 2.9873 - 2.7143 0.98 2675 144 0.2079 0.2585 REMARK 3 5 2.7143 - 2.5197 0.99 2698 141 0.2162 0.2949 REMARK 3 6 2.5197 - 2.3712 1.00 2709 134 0.2130 0.3229 REMARK 3 7 2.3712 - 2.2525 1.00 2698 145 0.2098 0.2622 REMARK 3 8 2.2525 - 2.1544 1.00 2677 157 0.2244 0.2836 REMARK 3 9 2.1544 - 2.0715 1.00 2702 130 0.2309 0.2476 REMARK 3 10 2.0715 - 2.0000 0.99 2675 139 0.2501 0.3293 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.090 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.05 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 2749 REMARK 3 ANGLE : 1.151 3750 REMARK 3 CHIRALITY : 0.075 409 REMARK 3 PLANARITY : 0.004 489 REMARK 3 DIHEDRAL : 13.952 991 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 90 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.6036 225.4874 50.4124 REMARK 3 T TENSOR REMARK 3 T11: 0.1201 T22: 0.1003 REMARK 3 T33: 0.1457 T12: 0.0525 REMARK 3 T13: 0.0146 T23: 0.0178 REMARK 3 L TENSOR REMARK 3 L11: 2.9387 L22: 3.1649 REMARK 3 L33: 2.5962 L12: -0.8265 REMARK 3 L13: -0.6259 L23: 0.6569 REMARK 3 S TENSOR REMARK 3 S11: -0.0210 S12: -0.1211 S13: -0.2593 REMARK 3 S21: 0.1706 S22: -0.0047 S23: -0.3345 REMARK 3 S31: 0.0806 S32: 0.2155 S33: 0.0101 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 91 THROUGH 127 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.2170 226.1868 43.9231 REMARK 3 T TENSOR REMARK 3 T11: 0.1279 T22: 0.0944 REMARK 3 T33: 0.1602 T12: 0.0399 REMARK 3 T13: 0.0436 T23: -0.0318 REMARK 3 L TENSOR REMARK 3 L11: 0.9840 L22: 0.3162 REMARK 3 L33: 0.6626 L12: -0.2148 REMARK 3 L13: 0.0896 L23: -0.5797 REMARK 3 S TENSOR REMARK 3 S11: -0.0449 S12: -0.0849 S13: -0.0587 REMARK 3 S21: 0.0528 S22: -0.0261 S23: 0.1437 REMARK 3 S31: 0.1388 S32: -0.0072 S33: 0.0692 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 128 THROUGH 227 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.0651 245.9950 19.7135 REMARK 3 T TENSOR REMARK 3 T11: 0.2613 T22: 0.2063 REMARK 3 T33: 0.1164 T12: 0.0491 REMARK 3 T13: 0.0591 T23: -0.0237 REMARK 3 L TENSOR REMARK 3 L11: 0.9962 L22: 3.3552 REMARK 3 L33: 1.4047 L12: 0.6482 REMARK 3 L13: 0.3730 L23: 0.5788 REMARK 3 S TENSOR REMARK 3 S11: -0.0088 S12: 0.3311 S13: -0.0815 REMARK 3 S21: -0.6424 S22: -0.0672 S23: -0.2279 REMARK 3 S31: 0.0725 S32: 0.2574 S33: 0.0346 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 228 THROUGH 288 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.1786 245.3215 39.2297 REMARK 3 T TENSOR REMARK 3 T11: 0.1106 T22: 0.0923 REMARK 3 T33: 0.1043 T12: 0.0234 REMARK 3 T13: 0.0354 T23: -0.0302 REMARK 3 L TENSOR REMARK 3 L11: 0.5657 L22: 3.1443 REMARK 3 L33: 2.2262 L12: 0.6729 REMARK 3 L13: -0.4874 L23: -2.6013 REMARK 3 S TENSOR REMARK 3 S11: 0.0881 S12: -0.0001 S13: -0.0135 REMARK 3 S21: -0.0213 S22: -0.1181 S23: -0.0941 REMARK 3 S31: -0.0531 S32: 0.0861 S33: 0.0273 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 289 THROUGH 341 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.0754 232.6398 30.6214 REMARK 3 T TENSOR REMARK 3 T11: 0.1787 T22: 0.1419 REMARK 3 T33: 0.1918 T12: 0.0151 REMARK 3 T13: 0.0661 T23: -0.0404 REMARK 3 L TENSOR REMARK 3 L11: 0.1111 L22: 0.8144 REMARK 3 L33: 1.3318 L12: -0.4251 REMARK 3 L13: 0.2182 L23: -0.4165 REMARK 3 S TENSOR REMARK 3 S11: -0.0100 S12: 0.0949 S13: 0.1534 REMARK 3 S21: -0.2269 S22: -0.0182 S23: -0.2333 REMARK 3 S31: 0.0667 S32: 0.2244 S33: -0.0034 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 342 THROUGH 374 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.1598 219.4239 31.6456 REMARK 3 T TENSOR REMARK 3 T11: 0.2411 T22: -0.0786 REMARK 3 T33: 0.2487 T12: 0.0846 REMARK 3 T13: 0.0886 T23: -0.2998 REMARK 3 L TENSOR REMARK 3 L11: 2.2809 L22: 1.7263 REMARK 3 L33: 1.0910 L12: -0.9358 REMARK 3 L13: 0.2109 L23: -0.9627 REMARK 3 S TENSOR REMARK 3 S11: 0.3010 S12: -0.1021 S13: -1.1099 REMARK 3 S21: -0.1264 S22: -0.2731 S23: 0.0673 REMARK 3 S31: 0.5072 S32: 0.6997 S33: -0.0485 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4GGB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-AUG-12. REMARK 100 THE DEPOSITION ID IS D_1000074146. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-JUL-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28641 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 9.600 REMARK 200 R MERGE (I) : 0.09200 REMARK 200 R SYM (I) : 0.09200 REMARK 200 FOR THE DATA SET : 15.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 5.80 REMARK 200 R MERGE FOR SHELL (I) : 0.68000 REMARK 200 R SYM FOR SHELL (I) : 0.68000 REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 3SJN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN (10 MM TRIS PH 7.9, 150 MM REMARK 280 NACL, 5 MM MGCL); RESERVOIR (0.2M CACL2, 0.1 M HEPES PH 7.5, 28% REMARK 280 PEG400); CRYOPROTECTION (RESERVOIR), SITTING DROP VAPOR REMARK 280 DIFFUCTION, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 66.08900 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 66.08900 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 47.73600 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 66.08900 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 66.08900 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 47.73600 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 66.08900 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 66.08900 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 47.73600 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 66.08900 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 66.08900 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 47.73600 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 66.08900 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 66.08900 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 47.73600 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 66.08900 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 66.08900 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 47.73600 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 66.08900 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 66.08900 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 47.73600 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 66.08900 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 66.08900 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 47.73600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 38450 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 83030 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -726.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 528.71200 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 264.35600 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 264.35600 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 -264.35600 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 264.35600 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 95.47200 REMARK 350 BIOMT1 6 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 6 0.000000 -1.000000 0.000000 528.71200 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 95.47200 REMARK 350 BIOMT1 7 0.000000 1.000000 0.000000 -264.35600 REMARK 350 BIOMT2 7 1.000000 0.000000 0.000000 264.35600 REMARK 350 BIOMT3 7 0.000000 0.000000 -1.000000 95.47200 REMARK 350 BIOMT1 8 0.000000 -1.000000 0.000000 264.35600 REMARK 350 BIOMT2 8 -1.000000 0.000000 0.000000 264.35600 REMARK 350 BIOMT3 8 0.000000 0.000000 -1.000000 95.47200 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CL CL A 406 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 502 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 557 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 574 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 616 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 664 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 12 REMARK 465 HIS A 13 REMARK 465 ARG A 14 REMARK 465 LEU A 15 REMARK 465 ASP A 16 REMARK 465 THR A 17 REMARK 465 PRO A 18 REMARK 465 PHE A 19 REMARK 465 GLU A 20 REMARK 465 SER A 21 REMARK 465 ALA A 22 REMARK 465 SER A 23 REMARK 465 MET A 24 REMARK 465 ARG A 25 REMARK 465 PHE A 26 REMARK 465 ASP A 27 REMARK 465 ARG A 28 REMARK 465 ARG A 29 REMARK 465 ALA A 30 REMARK 465 SER A 136 REMARK 465 PHE A 137 REMARK 465 LYS A 138 REMARK 465 ARG A 139 REMARK 465 ASP A 140 REMARK 465 ASN A 141 REMARK 465 VAL A 142 REMARK 465 MET A 375 REMARK 465 PRO A 376 REMARK 465 ASP A 377 REMARK 465 PRO A 378 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 207 CA - CB - CG ANGL. DEV. = -14.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 90 60.18 -105.18 REMARK 500 GLN A 90 60.84 -105.18 REMARK 500 ILE A 167 -152.72 -125.90 REMARK 500 GLN A 227 78.85 -101.03 REMARK 500 TRP A 248 38.45 -95.60 REMARK 500 HIS A 249 -139.18 54.93 REMARK 500 TRP A 298 132.08 -173.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 402 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 154 OE2 REMARK 620 2 GLU A 158 OE2 91.1 REMARK 620 3 HOH A 533 O 78.4 92.0 REMARK 620 4 HOH A 535 O 98.7 93.8 173.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 401 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 194 OD2 REMARK 620 2 GLU A 220 OE2 85.7 REMARK 620 3 GLU A 246 OE2 147.1 86.4 REMARK 620 4 HOH A 567 O 115.0 76.1 93.9 REMARK 620 5 HOH A 678 O 70.8 94.8 78.0 168.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 403 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 209 OD2 REMARK 620 2 ASP A 209 OD1 52.2 REMARK 620 3 GLY A 237 O 101.4 89.8 REMARK 620 4 HOH A 668 O 83.8 134.0 86.5 REMARK 620 5 HOH A 669 O 156.4 150.9 87.0 74.7 REMARK 620 6 HOH A 675 O 85.4 99.5 170.7 87.9 84.3 REMARK 620 7 HOH A 676 O 118.8 67.5 86.3 157.2 83.4 96.1 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 408 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EFI-500704 RELATED DB: TARGETTRACK DBREF 4GGB A 1 378 UNP A9CEQ8 A9CEQ8_AGRT5 1 378 SEQRES 1 A 378 MET LYS ILE THR ALA VAL ARG THR HIS LEU LEU GLU HIS SEQRES 2 A 378 ARG LEU ASP THR PRO PHE GLU SER ALA SER MET ARG PHE SEQRES 3 A 378 ASP ARG ARG ALA HIS VAL LEU VAL GLU ILE GLU CYS ASP SEQRES 4 A 378 ASP GLY THR VAL GLY TRP GLY GLU CYS LEU GLY PRO ALA SEQRES 5 A 378 ARG PRO ASN ALA ALA VAL VAL GLN ALA TYR SER GLY TRP SEQRES 6 A 378 LEU ILE GLY GLN ASP PRO ARG GLN THR GLU LYS ILE TRP SEQRES 7 A 378 ALA VAL LEU TYR ASN ALA LEU ARG ASP GLN GLY GLN ARG SEQRES 8 A 378 GLY LEU SER LEU THR ALA LEU SER GLY ILE ASP ILE ALA SEQRES 9 A 378 LEU TRP ASP ILE LYS GLY LYS HIS TYR GLY ALA SER ILE SEQRES 10 A 378 SER MET LEU LEU GLY GLY ARG TRP ARG GLU SER VAL ARG SEQRES 11 A 378 ALA TYR ALA THR GLY SER PHE LYS ARG ASP ASN VAL ASP SEQRES 12 A 378 ARG VAL SER ASP ASN ALA SER GLU MET ALA GLU ARG ARG SEQRES 13 A 378 ALA GLU GLY PHE HIS ALA CYS LYS ILE LYS ILE GLY PHE SEQRES 14 A 378 GLY VAL GLU GLU ASP LEU ARG VAL ILE ALA ALA VAL ARG SEQRES 15 A 378 GLU ALA ILE GLY PRO ASP MET ARG LEU MET ILE ASP ALA SEQRES 16 A 378 ASN HIS GLY TYR THR VAL THR GLU ALA ILE THR LEU GLY SEQRES 17 A 378 ASP ARG ALA ALA GLY PHE GLY ILE ASP TRP PHE GLU GLU SEQRES 18 A 378 PRO VAL VAL PRO GLU GLN LEU ASP ALA TYR ALA ARG VAL SEQRES 19 A 378 ARG ALA GLY GLN PRO ILE PRO VAL ALA GLY GLY GLU THR SEQRES 20 A 378 TRP HIS GLY ARG TYR GLY MET TRP GLN ALA LEU SER ALA SEQRES 21 A 378 GLY ALA VAL ASP ILE LEU GLN PRO ASP LEU CYS GLY CYS SEQRES 22 A 378 GLY GLY PHE SER GLU ILE GLN LYS ILE ALA THR LEU ALA SEQRES 23 A 378 THR LEU HIS GLY VAL ARG ILE VAL PRO HIS VAL TRP GLY SEQRES 24 A 378 THR GLY VAL GLN ILE ALA ALA ALA LEU GLN PHE MET ALA SEQRES 25 A 378 ALA MET THR PRO ASP PRO VAL ARG VAL ASN PRO ILE GLU SEQRES 26 A 378 PRO ILE MET GLU PHE ASP ARG THR HIS ASN PRO PHE ARG SEQRES 27 A 378 GLN ALA VAL LEU ARG GLU PRO LEU GLU ALA VAL ASN GLY SEQRES 28 A 378 VAL VAL THR ILE PRO ASP GLY PRO GLY LEU GLY ILE GLU SEQRES 29 A 378 ILE ASN ARG ASP ALA LEU THR GLU PHE ARG MET PRO ASP SEQRES 30 A 378 PRO HET CA A 401 1 HET CA A 402 1 HET CA A 403 1 HET CL A 404 1 HET CL A 405 1 HET CL A 406 1 HET CL A 407 1 HET CL A 408 1 HETNAM CA CALCIUM ION HETNAM CL CHLORIDE ION FORMUL 2 CA 3(CA 2+) FORMUL 5 CL 5(CL 1-) FORMUL 10 HOH *184(H2 O) HELIX 1 1 PRO A 51 ILE A 67 1 17 HELIX 2 2 GLN A 73 LEU A 85 1 13 HELIX 3 3 ARG A 86 GLY A 89 5 4 HELIX 4 4 GLN A 90 GLY A 114 1 25 HELIX 5 5 SER A 116 LEU A 121 1 6 HELIX 6 6 ARG A 144 GLU A 158 1 15 HELIX 7 7 GLY A 170 GLY A 186 1 17 HELIX 8 8 THR A 200 ALA A 212 1 13 HELIX 9 9 GLY A 213 GLY A 215 5 3 HELIX 10 10 GLN A 227 GLN A 238 1 12 HELIX 11 11 GLY A 250 GLY A 261 1 12 HELIX 12 12 GLY A 274 HIS A 289 1 16 HELIX 13 13 THR A 300 MET A 314 1 15 HELIX 14 14 HIS A 334 ALA A 340 1 7 HELIX 15 15 ASN A 366 LEU A 370 5 5 SHEET 1 A 4 VAL A 43 CYS A 48 0 SHEET 2 A 4 VAL A 32 CYS A 38 -1 N VAL A 34 O GLY A 46 SHEET 3 A 4 ILE A 3 LEU A 10 -1 N ARG A 7 O GLU A 35 SHEET 4 A 4 THR A 371 PHE A 373 -1 O THR A 371 N LEU A 10 SHEET 1 B 8 ARG A 292 ILE A 293 0 SHEET 2 B 8 ILE A 265 LEU A 266 1 N LEU A 266 O ARG A 292 SHEET 3 B 8 VAL A 242 GLY A 244 1 O VAL A 242 N ILE A 265 SHEET 4 B 8 TRP A 218 GLU A 220 1 N PHE A 219 O ALA A 243 SHEET 5 B 8 ARG A 190 ASP A 194 1 N ILE A 193 O GLU A 220 SHEET 6 B 8 ALA A 162 LYS A 166 1 N ILE A 165 O MET A 192 SHEET 7 B 8 SER A 128 THR A 134 1 N ALA A 133 O LYS A 164 SHEET 8 B 8 ILE A 327 PHE A 330 1 O PHE A 330 N TYR A 132 SHEET 1 C 9 ARG A 292 ILE A 293 0 SHEET 2 C 9 ILE A 265 LEU A 266 1 N LEU A 266 O ARG A 292 SHEET 3 C 9 VAL A 242 GLY A 244 1 O VAL A 242 N ILE A 265 SHEET 4 C 9 TRP A 218 GLU A 220 1 N PHE A 219 O ALA A 243 SHEET 5 C 9 ARG A 190 ASP A 194 1 N ILE A 193 O GLU A 220 SHEET 6 C 9 ALA A 162 LYS A 166 1 N ILE A 165 O MET A 192 SHEET 7 C 9 SER A 128 THR A 134 1 N ALA A 133 O LYS A 164 SHEET 8 C 9 VAL A 352 THR A 354 -1 O VAL A 353 N VAL A 129 SHEET 9 C 9 ALA A 348 VAL A 349 -1 N VAL A 349 O VAL A 352 LINK OE2 GLU A 154 CA CA A 402 1555 1555 2.24 LINK OE2 GLU A 158 CA CA A 402 1555 1555 2.41 LINK OD2 ASP A 194 CA CA A 401 1555 1555 2.58 LINK OD2 ASP A 209 CA CA A 403 1555 1555 2.44 LINK OD1 ASP A 209 CA CA A 403 1555 1555 2.56 LINK OE2 GLU A 220 CA CA A 401 1555 1555 2.25 LINK O GLY A 237 CA CA A 403 1555 1555 2.28 LINK OE2 GLU A 246 CA CA A 401 1555 1555 2.47 LINK CA CA A 401 O HOH A 567 1555 1555 2.59 LINK CA CA A 401 O HOH A 678 1555 1555 2.39 LINK CA CA A 402 O HOH A 533 1555 1555 2.36 LINK CA CA A 402 O HOH A 535 1555 1555 2.48 LINK CA CA A 403 O HOH A 668 1555 1555 2.27 LINK CA CA A 403 O HOH A 669 1555 1555 2.27 LINK CA CA A 403 O HOH A 675 1555 1555 2.36 LINK CA CA A 403 O HOH A 676 1555 1555 2.31 CISPEP 1 ASP A 317 PRO A 318 0 5.58 SITE 1 AC1 5 ASP A 194 GLU A 220 GLU A 246 HOH A 567 SITE 2 AC1 5 HOH A 678 SITE 1 AC2 6 GLU A 154 GLU A 158 ASP A 368 LEU A 370 SITE 2 AC2 6 HOH A 533 HOH A 535 SITE 1 AC3 6 ASP A 209 GLY A 237 HOH A 668 HOH A 669 SITE 2 AC3 6 HOH A 675 HOH A 676 SITE 1 AC4 3 GLY A 250 TYR A 252 GLY A 253 SITE 1 AC5 4 VAL A 43 TRP A 45 ARG A 367 HOH A 633 SITE 1 AC6 4 GLN A 90 GLY A 92 LEU A 93 HOH A 616 SITE 1 AC7 4 ILE A 304 ASP A 331 ASN A 335 ARG A 338 SITE 1 AC8 3 ALA A 115 SER A 116 MET A 119 CRYST1 132.178 132.178 95.472 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007566 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007566 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010474 0.00000