HEADER HYDROLASE 14-AUG-12 4GLK TITLE STRUCTURE AND ACTIVITY OF ABIQ, A LACTOCOCCAL ANTI-PHAGE TITLE 2 ENDORIBONUCLEASE BELONGING TO THE TYPE-III TOXIN-ANTITOXIN SYSTEM COMPND MOL_ID: 1; COMPND 2 MOLECULE: ABIQ; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 13-183; COMPND 5 EC: 3.1.-.-; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LACTOCOCCUS LACTIS; SOURCE 3 ORGANISM_TAXID: 1358; SOURCE 4 GENE: ABIQ; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 83333; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: K12; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PDEST17 KEYWDS ALPHA BETA, ENDONUCLEASE, RNA ANTIQ, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.SAMSON,S.SPINELLI,C.CAMBILLAU,S.MOINEAU REVDAT 3 13-SEP-23 4GLK 1 REMARK SEQADV REVDAT 2 20-FEB-13 4GLK 1 JRNL REVDAT 1 16-JAN-13 4GLK 0 JRNL AUTH J.E.SAMSON,S.SPINELLI,C.CAMBILLAU,S.MOINEAU JRNL TITL STRUCTURE AND ACTIVITY OF ABIQ, A LACTOCOCCAL JRNL TITL 2 ENDORIBONUCLEASE BELONGING TO THE TYPE III TOXIN-ANTITOXIN JRNL TITL 3 SYSTEM. JRNL REF MOL.MICROBIOL. V. 87 756 2013 JRNL REFN ISSN 0950-382X JRNL PMID 23279123 JRNL DOI 10.1111/MMI.12129 REMARK 2 REMARK 2 RESOLUTION. 2.16 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.9.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.16 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.67 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 9880 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.020 REMARK 3 FREE R VALUE TEST SET COUNT : 694 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 5 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.16 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.42 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2734 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2327 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2561 REMARK 3 BIN R VALUE (WORKING SET) : 0.2274 REMARK 3 BIN FREE R VALUE : 0.3178 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 6.33 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 173 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1353 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 18 REMARK 3 SOLVENT ATOMS : 69 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 35.49 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.47 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 6.20900 REMARK 3 B22 (A**2) : 5.40180 REMARK 3 B33 (A**2) : -11.61080 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.272 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.930 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.924 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 1397 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 1876 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 493 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 28 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 195 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 1397 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 177 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 1651 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.18 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.77 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 23.96 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 13 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: {A|1 - A|17} REMARK 3 ORIGIN FOR THE GROUP (A): -4.2370 9.7849 -8.4216 REMARK 3 T TENSOR REMARK 3 T11: -0.0153 T22: 0.0060 REMARK 3 T33: -0.0027 T12: -0.0178 REMARK 3 T13: 0.0063 T23: -0.0282 REMARK 3 L TENSOR REMARK 3 L11: 0.5346 L22: 0.0035 REMARK 3 L33: 0.1401 L12: -0.1421 REMARK 3 L13: 0.1281 L23: -0.0091 REMARK 3 S TENSOR REMARK 3 S11: 0.0034 S12: 0.0205 S13: -0.0105 REMARK 3 S21: 0.0346 S22: -0.0029 S23: -0.0111 REMARK 3 S31: 0.0164 S32: -0.0004 S33: -0.0005 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: {A|18 - A|33} REMARK 3 ORIGIN FOR THE GROUP (A): -11.6035 12.1350 -3.6199 REMARK 3 T TENSOR REMARK 3 T11: 0.0082 T22: -0.0168 REMARK 3 T33: 0.0187 T12: -0.0038 REMARK 3 T13: 0.0308 T23: -0.0191 REMARK 3 L TENSOR REMARK 3 L11: 0.1613 L22: 0.3875 REMARK 3 L33: 0.3830 L12: 0.0871 REMARK 3 L13: -0.0568 L23: -0.1545 REMARK 3 S TENSOR REMARK 3 S11: -0.0029 S12: 0.0161 S13: 0.0139 REMARK 3 S21: 0.0236 S22: -0.0157 S23: 0.0000 REMARK 3 S31: -0.0024 S32: -0.0143 S33: 0.0186 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: {A|34 - A|44} REMARK 3 ORIGIN FOR THE GROUP (A): 4.6029 15.8531 -10.3077 REMARK 3 T TENSOR REMARK 3 T11: -0.0071 T22: 0.0209 REMARK 3 T33: 0.0115 T12: 0.0615 REMARK 3 T13: -0.0127 T23: 0.0126 REMARK 3 L TENSOR REMARK 3 L11: 0.1406 L22: 0.0000 REMARK 3 L33: 0.3075 L12: -0.0553 REMARK 3 L13: -0.3807 L23: -0.4888 REMARK 3 S TENSOR REMARK 3 S11: -0.0004 S12: -0.0013 S13: -0.0027 REMARK 3 S21: -0.0019 S22: 0.0050 S23: -0.0108 REMARK 3 S31: -0.0077 S32: 0.0019 S33: -0.0045 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: {A|45 - A|57} REMARK 3 ORIGIN FOR THE GROUP (A): -7.9765 19.0957 -13.6104 REMARK 3 T TENSOR REMARK 3 T11: -0.0081 T22: -0.0048 REMARK 3 T33: 0.0087 T12: 0.0079 REMARK 3 T13: -0.0156 T23: -0.0096 REMARK 3 L TENSOR REMARK 3 L11: 0.1954 L22: 0.3649 REMARK 3 L33: 0.2286 L12: 0.3321 REMARK 3 L13: -0.0618 L23: 0.8137 REMARK 3 S TENSOR REMARK 3 S11: -0.0020 S12: 0.0201 S13: 0.0047 REMARK 3 S21: -0.0042 S22: 0.0214 S23: 0.0075 REMARK 3 S31: 0.0064 S32: -0.0228 S33: -0.0194 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: {A|58 - A|68} REMARK 3 ORIGIN FOR THE GROUP (A): -14.6242 31.1730 -12.7675 REMARK 3 T TENSOR REMARK 3 T11: -0.0243 T22: 0.0163 REMARK 3 T33: 0.0010 T12: 0.0129 REMARK 3 T13: -0.0394 T23: 0.0223 REMARK 3 L TENSOR REMARK 3 L11: 0.0636 L22: 0.0000 REMARK 3 L33: 0.0003 L12: -0.0439 REMARK 3 L13: 0.0587 L23: -0.1771 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: -0.0023 S13: 0.0025 REMARK 3 S21: 0.0052 S22: -0.0039 S23: 0.0049 REMARK 3 S31: 0.0003 S32: -0.0081 S33: 0.0039 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: {A|69 - A|80} REMARK 3 ORIGIN FOR THE GROUP (A): -8.3530 27.3597 -21.7348 REMARK 3 T TENSOR REMARK 3 T11: -0.0198 T22: 0.0256 REMARK 3 T33: -0.0036 T12: -0.0051 REMARK 3 T13: -0.0229 T23: 0.0380 REMARK 3 L TENSOR REMARK 3 L11: 0.3186 L22: 0.0410 REMARK 3 L33: 0.1217 L12: 0.4046 REMARK 3 L13: 0.0407 L23: -0.4669 REMARK 3 S TENSOR REMARK 3 S11: 0.0061 S12: 0.0066 S13: 0.0020 REMARK 3 S21: -0.0054 S22: -0.0047 S23: 0.0243 REMARK 3 S31: -0.0076 S32: 0.0030 S33: -0.0014 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: {A|81 - A|92} REMARK 3 ORIGIN FOR THE GROUP (A): -9.1418 24.1527 -15.8550 REMARK 3 T TENSOR REMARK 3 T11: -0.0233 T22: 0.0141 REMARK 3 T33: 0.0057 T12: 0.0069 REMARK 3 T13: 0.0045 T23: 0.0229 REMARK 3 L TENSOR REMARK 3 L11: 0.2875 L22: 0.3091 REMARK 3 L33: 0.2779 L12: 0.0482 REMARK 3 L13: -0.3700 L23: -0.1493 REMARK 3 S TENSOR REMARK 3 S11: 0.0021 S12: -0.0023 S13: 0.0168 REMARK 3 S21: -0.0208 S22: -0.0072 S23: 0.0173 REMARK 3 S31: -0.0135 S32: -0.0042 S33: 0.0051 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: {A|93 - A|104} REMARK 3 ORIGIN FOR THE GROUP (A): -1.4932 7.3490 -10.2771 REMARK 3 T TENSOR REMARK 3 T11: 0.0018 T22: -0.0219 REMARK 3 T33: 0.0214 T12: 0.0183 REMARK 3 T13: -0.0318 T23: -0.0305 REMARK 3 L TENSOR REMARK 3 L11: 0.0817 L22: 0.0000 REMARK 3 L33: 0.0341 L12: -0.5586 REMARK 3 L13: 0.0298 L23: 0.3223 REMARK 3 S TENSOR REMARK 3 S11: -0.0039 S12: 0.0036 S13: 0.0110 REMARK 3 S21: 0.0148 S22: -0.0004 S23: -0.0137 REMARK 3 S31: 0.0133 S32: 0.0053 S33: 0.0043 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: {A|105 - A|116} REMARK 3 ORIGIN FOR THE GROUP (A): -13.7104 10.3151 -25.7781 REMARK 3 T TENSOR REMARK 3 T11: -0.0066 T22: -0.0135 REMARK 3 T33: 0.0399 T12: -0.0060 REMARK 3 T13: -0.0793 T23: -0.0113 REMARK 3 L TENSOR REMARK 3 L11: 0.3186 L22: 0.3591 REMARK 3 L33: 0.0000 L12: 0.1042 REMARK 3 L13: 0.3329 L23: -0.1747 REMARK 3 S TENSOR REMARK 3 S11: 0.0009 S12: 0.0059 S13: -0.0002 REMARK 3 S21: 0.0073 S22: 0.0005 S23: 0.0118 REMARK 3 S31: -0.0041 S32: -0.0190 S33: -0.0014 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: {A|117 - A|129} REMARK 3 ORIGIN FOR THE GROUP (A): -2.2191 21.6364 -23.4358 REMARK 3 T TENSOR REMARK 3 T11: 0.0122 T22: -0.0280 REMARK 3 T33: 0.0070 T12: -0.0126 REMARK 3 T13: -0.0130 T23: 0.0161 REMARK 3 L TENSOR REMARK 3 L11: 0.0737 L22: 0.0018 REMARK 3 L33: 0.2394 L12: 0.1287 REMARK 3 L13: -0.1610 L23: -0.4035 REMARK 3 S TENSOR REMARK 3 S11: 0.0048 S12: -0.0021 S13: -0.0018 REMARK 3 S21: -0.0368 S22: 0.0023 S23: 0.0019 REMARK 3 S31: 0.0030 S32: 0.0105 S33: -0.0071 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: {A|130 - A|142} REMARK 3 ORIGIN FOR THE GROUP (A): 4.5887 27.1871 -7.8214 REMARK 3 T TENSOR REMARK 3 T11: -0.0263 T22: -0.0145 REMARK 3 T33: 0.0527 T12: -0.0124 REMARK 3 T13: -0.0141 T23: 0.0181 REMARK 3 L TENSOR REMARK 3 L11: 0.0656 L22: 0.2088 REMARK 3 L33: 0.0209 L12: -0.1076 REMARK 3 L13: 0.2472 L23: -0.0807 REMARK 3 S TENSOR REMARK 3 S11: -0.0012 S12: -0.0013 S13: -0.0169 REMARK 3 S21: 0.0067 S22: 0.0092 S23: -0.0094 REMARK 3 S31: 0.0007 S32: 0.0146 S33: -0.0079 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: {A|143 - A|155} REMARK 3 ORIGIN FOR THE GROUP (A): -2.0543 29.2585 -1.0962 REMARK 3 T TENSOR REMARK 3 T11: -0.0077 T22: 0.0221 REMARK 3 T33: -0.0246 T12: 0.0234 REMARK 3 T13: -0.0404 T23: -0.0192 REMARK 3 L TENSOR REMARK 3 L11: 0.0465 L22: 0.0214 REMARK 3 L33: 0.0181 L12: -0.1037 REMARK 3 L13: 0.5807 L23: 0.1399 REMARK 3 S TENSOR REMARK 3 S11: 0.0023 S12: -0.0009 S13: 0.0069 REMARK 3 S21: 0.0200 S22: 0.0050 S23: -0.0118 REMARK 3 S31: -0.0004 S32: 0.0032 S33: -0.0073 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: {A|156 - A|168} REMARK 3 ORIGIN FOR THE GROUP (A): 3.5622 10.5932 2.3426 REMARK 3 T TENSOR REMARK 3 T11: 0.0305 T22: 0.0120 REMARK 3 T33: 0.0014 T12: 0.0221 REMARK 3 T13: -0.1095 T23: 0.0192 REMARK 3 L TENSOR REMARK 3 L11: 0.0070 L22: 0.1256 REMARK 3 L33: 0.1130 L12: 0.2251 REMARK 3 L13: 0.6630 L23: -0.2637 REMARK 3 S TENSOR REMARK 3 S11: -0.0017 S12: -0.0110 S13: -0.0170 REMARK 3 S21: 0.0114 S22: 0.0010 S23: -0.0034 REMARK 3 S31: 0.0040 S32: 0.0073 S33: 0.0007 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4GLK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-AUG-12. REMARK 100 THE DEPOSITION ID IS D_1000074335. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-OCT-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791 REMARK 200 MONOCHROMATOR : CHANNEL CUT SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9880 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.160 REMARK 200 RESOLUTION RANGE LOW (A) : 45.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 13.70 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.16 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.22 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 13.10 REMARK 200 R MERGE FOR SHELL (I) : 0.60000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2XDD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: BUFFER: 1 M POTASSIUM/SODIUM TARTRATE, REMARK 280 0.1 M MES, PH 6.0, DROP: 200 NL 4.6 MG/ML PROTEIN + 100 NL REMARK 280 BUFFER, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.07000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 32.12000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 27.25500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 32.12000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.07000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 27.25500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 54 REMARK 465 LYS A 55 REMARK 465 GLY A 56 REMARK 465 SER A 169 REMARK 465 THR A 170 REMARK 465 PHE A 171 REMARK 465 GLN A 172 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 41 CG CD CE NZ REMARK 470 ASN A 57 CG OD1 ND2 REMARK 470 ASP A 61 CG OD1 OD2 REMARK 470 LYS A 62 CG CD CE NZ REMARK 470 LYS A 66 CG CD CE NZ REMARK 470 LYS A 108 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 28 -89.48 37.87 REMARK 500 PRO A 58 -16.18 -39.10 REMARK 500 ASN A 79 53.23 -167.40 REMARK 500 LEU A 88 77.48 -102.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 203 DBREF 4GLK A 2 172 UNP Q9ZJ19 Q9ZJ19_9LACT 13 183 SEQADV 4GLK GLY A 1 UNP Q9ZJ19 EXPRESSION TAG SEQADV 4GLK LEU A 51 UNP Q9ZJ19 SER 62 ENGINEERED MUTATION SEQRES 1 A 172 GLY THR LEU ARG PHE PHE THR VAL THR ASP GLU TYR ILE SEQRES 2 A 172 ALA TYR LEU ARG LYS PHE GLU SER LYS VAL HIS TYR GLN SEQRES 3 A 172 TYR GLU ASN ASN ALA SER THR TYR VAL GLY VAL VAL LEU SEQRES 4 A 172 LYS LYS ASN ASP PHE ASN TYR PHE ILE PRO LEU LEU SER SEQRES 5 A 172 TYR LYS LYS GLY ASN PRO GLU LYS ASP LYS ALA MET LYS SEQRES 6 A 172 LYS ARG SER ARG ILE VAL THR ARG LEU PHE GLU ILE GLY SEQRES 7 A 172 ASN ILE ASN ASN PRO LEU GLY TYR LEU LEU HIS HIS ASN SEQRES 8 A 172 MET ILE PRO VAL PRO ASP SER GLU LEU ILE PRO LEU PRO SEQRES 9 A 172 LEU ASP LEU LYS LYS PRO LYS HIS LYS MET MET GLN LYS SEQRES 10 A 172 GLN LEU ILE TYR MET LYS SER ILE SER GLU LYS ILE GLU SEQRES 11 A 172 ASN LYS SER GLU VAL VAL TYR ARG LYS ALA ALA HIS GLU SEQRES 12 A 172 LYS ASP GLY TYR TYR LEU LYS PHE SER CYS ASP PHE LYS SEQRES 13 A 172 LEU LEU GLU ALA LYS ALA THR LEU TYR SER LYS LYS SER SEQRES 14 A 172 THR PHE GLN HET GOL A 201 6 HET GOL A 202 6 HET GOL A 203 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 GOL 3(C3 H8 O3) FORMUL 5 HOH *69(H2 O) HELIX 1 1 THR A 9 ARG A 17 1 9 HELIX 2 2 PRO A 58 ARG A 67 1 10 HELIX 3 3 HIS A 90 MET A 92 5 3 HELIX 4 4 PRO A 96 SER A 98 5 3 HELIX 5 5 LYS A 109 ILE A 125 1 17 HELIX 6 6 ILE A 125 HIS A 142 1 18 HELIX 7 7 ASP A 145 SER A 152 1 8 HELIX 8 8 ASP A 154 LYS A 167 1 14 SHEET 1 A 4 VAL A 71 GLU A 76 0 SHEET 2 A 4 ASN A 79 LEU A 88 -1 O GLY A 85 N LEU A 74 SHEET 3 A 4 ASN A 45 SER A 52 -1 N LEU A 51 O TYR A 86 SHEET 4 A 4 ILE A 93 PRO A 94 -1 O ILE A 93 N PHE A 47 SHEET 1 B 6 VAL A 71 GLU A 76 0 SHEET 2 B 6 ASN A 79 LEU A 88 -1 O GLY A 85 N LEU A 74 SHEET 3 B 6 ASN A 45 SER A 52 -1 N LEU A 51 O TYR A 86 SHEET 4 B 6 THR A 33 LYS A 40 -1 N THR A 33 O LEU A 50 SHEET 5 B 6 ARG A 4 VAL A 8 -1 N PHE A 6 O TYR A 34 SHEET 6 B 6 LEU A 100 PRO A 102 -1 O ILE A 101 N THR A 7 CISPEP 1 GLY A 36 VAL A 37 0 -1.47 CISPEP 2 LYS A 41 ASN A 42 0 -5.24 SITE 1 AC1 6 ARG A 73 PHE A 75 ASP A 97 TYR A 121 SITE 2 AC1 6 LYS A 128 GOL A 203 SITE 1 AC2 7 LEU A 3 ARG A 4 ARG A 69 LEU A 119 SITE 2 AC2 7 LYS A 123 LYS A 139 TYR A 148 SITE 1 AC3 9 ARG A 4 PHE A 6 SER A 68 PRO A 102 SITE 2 AC3 9 LYS A 128 LYS A 132 GOL A 201 HOH A 346 SITE 3 AC3 9 HOH A 368 CRYST1 50.140 54.510 64.240 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019944 0.000000 0.000000 0.00000 SCALE2 0.000000 0.018345 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015567 0.00000