HEADER LYASE 15-AUG-12 4GM1 TITLE CRYSTAL STRUCTURE OF BENZOYLFORMATE DECARBOXYLASE MUTANT L403S COMPND MOL_ID: 1; COMPND 2 MOLECULE: BENZOYLFORMATE DECARBOXYLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: BFD, BFDC; COMPND 5 EC: 4.1.1.7; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS PUTIDA; SOURCE 3 ORGANISM_TAXID: 303; SOURCE 4 GENE: MDLC; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET24 KEYWDS DECARBOXYLASE, THIAMIN THIAZOLONE DIPHOSPHATE COFACTOR, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR W.R.P.NOVAK,F.H.ANDREWS,A.R.TOM,P.R.GUNDERMAN,M.J.MCLEISH REVDAT 3 13-SEP-23 4GM1 1 REMARK SEQADV LINK REVDAT 2 15-NOV-17 4GM1 1 REMARK REVDAT 1 22-MAY-13 4GM1 0 JRNL AUTH F.H.ANDREWS,A.R.TOM,P.R.GUNDERMAN,W.R.NOVAK,M.J.MCLEISH JRNL TITL A BULKY HYDROPHOBIC RESIDUE IS NOT REQUIRED TO MAINTAIN THE JRNL TITL 2 V-CONFORMATION OF ENZYME-BOUND THIAMIN DIPHOSPHATE. JRNL REF BIOCHEMISTRY V. 52 3028 2013 JRNL REFN ISSN 0006-2960 JRNL PMID 23607689 JRNL DOI 10.1021/BI400368J REMARK 2 REMARK 2 RESOLUTION. 1.26 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.7.3_928 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.26 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.01 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 142263 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.139 REMARK 3 R VALUE (WORKING SET) : 0.138 REMARK 3 FREE R VALUE : 0.160 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 7130 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 23.0165 - 3.9137 0.99 4762 247 0.1543 0.1624 REMARK 3 2 3.9137 - 3.1089 1.00 4673 221 0.1340 0.1675 REMARK 3 3 3.1089 - 2.7166 1.00 4622 247 0.1406 0.1502 REMARK 3 4 2.7166 - 2.4685 1.00 4583 246 0.1345 0.1356 REMARK 3 5 2.4685 - 2.2918 1.00 4587 252 0.1298 0.1494 REMARK 3 6 2.2918 - 2.1568 1.00 4568 236 0.1241 0.1417 REMARK 3 7 2.1568 - 2.0488 1.00 4559 238 0.1304 0.1517 REMARK 3 8 2.0488 - 1.9597 1.00 4567 235 0.1259 0.1433 REMARK 3 9 1.9597 - 1.8843 1.00 4558 235 0.1283 0.1499 REMARK 3 10 1.8843 - 1.8193 1.00 4525 253 0.1204 0.1301 REMARK 3 11 1.8193 - 1.7624 1.00 4539 243 0.1151 0.1467 REMARK 3 12 1.7624 - 1.7121 1.00 4531 251 0.1208 0.1484 REMARK 3 13 1.7121 - 1.6670 1.00 4519 232 0.1174 0.1494 REMARK 3 14 1.6670 - 1.6263 1.00 4511 250 0.1106 0.1337 REMARK 3 15 1.6263 - 1.5894 1.00 4554 245 0.1088 0.1392 REMARK 3 16 1.5894 - 1.5556 1.00 4505 254 0.1119 0.1491 REMARK 3 17 1.5556 - 1.5244 1.00 4471 252 0.1135 0.1507 REMARK 3 18 1.5244 - 1.4957 1.00 4526 245 0.1161 0.1410 REMARK 3 19 1.4957 - 1.4690 1.00 4557 230 0.1213 0.1677 REMARK 3 20 1.4690 - 1.4441 1.00 4510 221 0.1242 0.1555 REMARK 3 21 1.4441 - 1.4208 1.00 4562 220 0.1303 0.1660 REMARK 3 22 1.4208 - 1.3989 1.00 4519 214 0.1363 0.1751 REMARK 3 23 1.3989 - 1.3784 1.00 4466 259 0.1428 0.1800 REMARK 3 24 1.3784 - 1.3590 1.00 4511 240 0.1593 0.1985 REMARK 3 25 1.3590 - 1.3406 1.00 4515 227 0.1727 0.1930 REMARK 3 26 1.3406 - 1.3232 1.00 4482 267 0.1904 0.2164 REMARK 3 27 1.3232 - 1.3066 0.98 4422 219 0.2142 0.2422 REMARK 3 28 1.3066 - 1.2909 0.95 4298 218 0.2521 0.2817 REMARK 3 29 1.2909 - 1.2759 0.92 4117 228 0.2839 0.3138 REMARK 3 30 1.2759 - 1.2600 0.88 4014 205 0.3066 0.3366 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.86 REMARK 3 K_SOL : 0.42 REMARK 3 B_SOL : 52.28 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 13.830 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.04570 REMARK 3 B22 (A**2) : -1.55650 REMARK 3 B33 (A**2) : 0.51070 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 4289 REMARK 3 ANGLE : 1.529 5896 REMARK 3 CHIRALITY : 0.096 647 REMARK 3 PLANARITY : 0.009 794 REMARK 3 DIHEDRAL : 13.761 1572 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4GM1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-AUG-12. REMARK 100 THE DEPOSITION ID IS D_1000074352. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-JUL-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.03 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 142419 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.260 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.08400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.26 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.31 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 0.74000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: PDB ENTRY 1BFD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM TRIS PH 8.5, 22% V/V PEG 400, REMARK 280 150 MM CACL2, 0.5% V/V MPD [2-METHYL-2,4-PENTANEDIOL], VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 40.75950 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 47.89750 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 68.58100 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 40.75950 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 47.89750 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 68.58100 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 40.75950 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 47.89750 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 68.58100 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 40.75950 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 47.89750 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 68.58100 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 29150 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 58960 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -223.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 81.51900 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 81.51900 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 NA NA A 603 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 732 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 733 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 826 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 996 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1090 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1234 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 VAL A 527 REMARK 465 LYS A 528 REMARK 465 ARG A 529 REMARK 465 SER A 530 REMARK 465 HIS A 531 REMARK 465 HIS A 532 REMARK 465 HIS A 533 REMARK 465 HIS A 534 REMARK 465 HIS A 535 REMARK 465 HIS A 536 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1242 O HOH A 1243 1.96 REMARK 500 O HOH A 1122 O HOH A 1175 2.11 REMARK 500 O HOH A 1213 O HOH A 1244 2.12 REMARK 500 O HOH A 1141 O HOH A 1172 2.12 REMARK 500 O HOH A 1188 O HOH A 1197 2.14 REMARK 500 ND2 ASN A 87 O HOH A 908 2.16 REMARK 500 O HOH A 1190 O HOH A 1194 2.17 REMARK 500 O HOH A 916 O HOH A 1252 2.17 REMARK 500 O HOH A 946 O HOH A 1171 2.17 REMARK 500 O HOH A 1064 O HOH A 1173 2.19 REMARK 500 O HOH A 796 O HOH A 1058 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 71 -148.78 47.90 REMARK 500 ASN A 202 65.17 -153.20 REMARK 500 HIS A 281 -75.35 -138.29 REMARK 500 ASP A 284 68.72 -154.67 REMARK 500 PRO A 447 43.06 -86.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 602 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 37 O REMARK 620 2 HOH A 898 O 74.2 REMARK 620 3 HOH A1051 O 92.7 73.7 REMARK 620 4 HOH A1072 O 71.0 62.0 135.3 REMARK 620 5 HOH A1103 O 130.7 60.7 57.8 101.6 REMARK 620 6 HOH A1118 O 129.3 76.7 117.4 58.8 59.7 REMARK 620 7 HOH A1168 O 78.9 135.4 143.0 76.0 148.6 94.7 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 603 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 117 O REMARK 620 2 LEU A 118 O 75.6 REMARK 620 3 ARG A 120 O 92.4 92.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 601 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 428 OD1 REMARK 620 2 ASN A 455 OD1 87.8 REMARK 620 3 THR A 457 O 107.3 83.4 REMARK 620 4 TZD A 606 O12 89.3 177.1 97.3 REMARK 620 5 TZD A 606 O21 165.5 98.0 86.7 84.9 REMARK 620 6 HOH A 724 O 80.6 83.9 164.7 95.8 86.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TZD A 606 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4GG1 RELATED DB: PDB REMARK 900 RELATED ID: 4GM4 RELATED DB: PDB REMARK 900 RELATED ID: 4GM0 RELATED DB: PDB DBREF 4GM1 A 1 528 UNP P20906 MDLC_PSEPU 1 528 SEQADV 4GM1 SER A 403 UNP P20906 LEU 403 ENGINEERED MUTATION SEQADV 4GM1 ARG A 529 UNP P20906 EXPRESSION TAG SEQADV 4GM1 SER A 530 UNP P20906 EXPRESSION TAG SEQADV 4GM1 HIS A 531 UNP P20906 EXPRESSION TAG SEQADV 4GM1 HIS A 532 UNP P20906 EXPRESSION TAG SEQADV 4GM1 HIS A 533 UNP P20906 EXPRESSION TAG SEQADV 4GM1 HIS A 534 UNP P20906 EXPRESSION TAG SEQADV 4GM1 HIS A 535 UNP P20906 EXPRESSION TAG SEQADV 4GM1 HIS A 536 UNP P20906 EXPRESSION TAG SEQRES 1 A 536 MET ALA SER VAL HIS GLY THR THR TYR GLU LEU LEU ARG SEQRES 2 A 536 ARG GLN GLY ILE ASP THR VAL PHE GLY ASN PRO GLY SER SEQRES 3 A 536 ASN GLU LEU PRO PHE LEU LYS ASP PHE PRO GLU ASP PHE SEQRES 4 A 536 ARG TYR ILE LEU ALA LEU GLN GLU ALA CYS VAL VAL GLY SEQRES 5 A 536 ILE ALA ASP GLY TYR ALA GLN ALA SER ARG LYS PRO ALA SEQRES 6 A 536 PHE ILE ASN LEU HIS SER ALA ALA GLY THR GLY ASN ALA SEQRES 7 A 536 MET GLY ALA LEU SER ASN ALA TRP ASN SER HIS SER PRO SEQRES 8 A 536 LEU ILE VAL THR ALA GLY GLN GLN THR ARG ALA MET ILE SEQRES 9 A 536 GLY VAL GLU ALA LEU LEU THR ASN VAL ASP ALA ALA ASN SEQRES 10 A 536 LEU PRO ARG PRO LEU VAL LYS TRP SER TYR GLU PRO ALA SEQRES 11 A 536 SER ALA ALA GLU VAL PRO HIS ALA MET SER ARG ALA ILE SEQRES 12 A 536 HIS MET ALA SER MET ALA PRO GLN GLY PRO VAL TYR LEU SEQRES 13 A 536 SER VAL PRO TYR ASP ASP TRP ASP LYS ASP ALA ASP PRO SEQRES 14 A 536 GLN SER HIS HIS LEU PHE ASP ARG HIS VAL SER SER SER SEQRES 15 A 536 VAL ARG LEU ASN ASP GLN ASP LEU ASP ILE LEU VAL LYS SEQRES 16 A 536 ALA LEU ASN SER ALA SER ASN PRO ALA ILE VAL LEU GLY SEQRES 17 A 536 PRO ASP VAL ASP ALA ALA ASN ALA ASN ALA ASP CYS VAL SEQRES 18 A 536 MET LEU ALA GLU ARG LEU LYS ALA PRO VAL TRP VAL ALA SEQRES 19 A 536 PRO SER ALA PRO ARG CYS PRO PHE PRO THR ARG HIS PRO SEQRES 20 A 536 CYS PHE ARG GLY LEU MET PRO ALA GLY ILE ALA ALA ILE SEQRES 21 A 536 SER GLN LEU LEU GLU GLY HIS ASP VAL VAL LEU VAL ILE SEQRES 22 A 536 GLY ALA PRO VAL PHE ARG TYR HIS GLN TYR ASP PRO GLY SEQRES 23 A 536 GLN TYR LEU LYS PRO GLY THR ARG LEU ILE SER VAL THR SEQRES 24 A 536 CYS ASP PRO LEU GLU ALA ALA ARG ALA PRO MET GLY ASP SEQRES 25 A 536 ALA ILE VAL ALA ASP ILE GLY ALA MET ALA SER ALA LEU SEQRES 26 A 536 ALA ASN LEU VAL GLU GLU SER SER ARG GLN LEU PRO THR SEQRES 27 A 536 ALA ALA PRO GLU PRO ALA LYS VAL ASP GLN ASP ALA GLY SEQRES 28 A 536 ARG LEU HIS PRO GLU THR VAL PHE ASP THR LEU ASN ASP SEQRES 29 A 536 MET ALA PRO GLU ASN ALA ILE TYR LEU ASN GLU SER THR SEQRES 30 A 536 SER THR THR ALA GLN MET TRP GLN ARG LEU ASN MET ARG SEQRES 31 A 536 ASN PRO GLY SER TYR TYR PHE CYS ALA ALA GLY GLY SER SEQRES 32 A 536 GLY PHE ALA LEU PRO ALA ALA ILE GLY VAL GLN LEU ALA SEQRES 33 A 536 GLU PRO GLU ARG GLN VAL ILE ALA VAL ILE GLY ASP GLY SEQRES 34 A 536 SER ALA ASN TYR SER ILE SER ALA LEU TRP THR ALA ALA SEQRES 35 A 536 GLN TYR ASN ILE PRO THR ILE PHE VAL ILE MET ASN ASN SEQRES 36 A 536 GLY THR TYR GLY ALA LEU ARG TRP PHE ALA GLY VAL LEU SEQRES 37 A 536 GLU ALA GLU ASN VAL PRO GLY LEU ASP VAL PRO GLY ILE SEQRES 38 A 536 ASP PHE ARG ALA LEU ALA LYS GLY TYR GLY VAL GLN ALA SEQRES 39 A 536 LEU LYS ALA ASP ASN LEU GLU GLN LEU LYS GLY SER LEU SEQRES 40 A 536 GLN GLU ALA LEU SER ALA LYS GLY PRO VAL LEU ILE GLU SEQRES 41 A 536 VAL SER THR VAL SER PRO VAL LYS ARG SER HIS HIS HIS SEQRES 42 A 536 HIS HIS HIS HET CA A 601 1 HET CA A 602 1 HET NA A 603 1 HET GOL A 604 6 HET GOL A 605 6 HET TZD A 606 27 HETNAM CA CALCIUM ION HETNAM NA SODIUM ION HETNAM GOL GLYCEROL HETNAM TZD 2-{3-[(4-AMINO-2-METHYLPYRIMIDIN-5-YL)METHYL]-4-METHYL- HETNAM 2 TZD 2-OXO-2,3-DIHYDRO-1,3-THIAZOL-5-YL}ETHYL TRIHYDROGEN HETNAM 3 TZD DIPHOSPHATE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN TZD THIAMIN THIAZOLONE DIPHOSPHATE FORMUL 2 CA 2(CA 2+) FORMUL 4 NA NA 1+ FORMUL 5 GOL 2(C3 H8 O3) FORMUL 7 TZD C12 H18 N4 O8 P2 S FORMUL 8 HOH *569(H2 O) HELIX 1 1 SER A 3 GLN A 15 1 13 HELIX 2 2 GLY A 25 ASN A 27 5 3 HELIX 3 3 GLU A 28 LYS A 33 1 6 HELIX 4 4 GLN A 46 ARG A 62 1 17 HELIX 5 5 SER A 71 ALA A 78 1 8 HELIX 6 6 ALA A 78 SER A 88 1 11 HELIX 7 7 THR A 100 GLY A 105 1 6 HELIX 8 8 ASP A 114 LEU A 118 5 5 HELIX 9 9 SER A 131 ALA A 133 5 3 HELIX 10 10 GLU A 134 MET A 148 1 15 HELIX 11 11 ASP A 161 TRP A 163 5 3 HELIX 12 12 ASP A 168 PHE A 175 5 8 HELIX 13 13 ASN A 186 ALA A 200 1 15 HELIX 14 14 GLY A 208 ALA A 214 1 7 HELIX 15 15 ALA A 216 LYS A 228 1 13 HELIX 16 16 GLY A 256 GLU A 265 1 10 HELIX 17 17 ASP A 301 ALA A 308 1 8 HELIX 18 18 ASP A 317 VAL A 329 1 13 HELIX 19 19 HIS A 354 ALA A 366 1 13 HELIX 20 20 THR A 379 LEU A 387 1 9 HELIX 21 21 PHE A 405 GLU A 417 1 13 HELIX 22 22 GLY A 429 TYR A 433 5 5 HELIX 23 23 SER A 434 SER A 436 5 3 HELIX 24 24 ALA A 437 ASN A 445 1 9 HELIX 25 25 TYR A 458 LEU A 468 1 11 HELIX 26 26 ASP A 482 GLY A 491 1 10 HELIX 27 27 ASN A 499 SER A 512 1 14 SHEET 1 A 6 ARG A 40 LEU A 43 0 SHEET 2 A 6 THR A 19 GLY A 22 1 N VAL A 20 O ILE A 42 SHEET 3 A 6 ALA A 65 HIS A 70 1 O PHE A 66 N PHE A 21 SHEET 4 A 6 LEU A 92 GLN A 98 1 O ILE A 93 N ILE A 67 SHEET 5 A 6 VAL A 154 PRO A 159 1 O LEU A 156 N VAL A 94 SHEET 6 A 6 SER A 126 TYR A 127 1 N TYR A 127 O SER A 157 SHEET 1 B 6 PHE A 249 LEU A 252 0 SHEET 2 B 6 VAL A 231 VAL A 233 1 N VAL A 231 O ARG A 250 SHEET 3 B 6 ALA A 204 LEU A 207 1 N ILE A 205 O TRP A 232 SHEET 4 B 6 VAL A 269 ILE A 273 1 O LEU A 271 N ALA A 204 SHEET 5 B 6 ARG A 294 THR A 299 1 O ILE A 296 N VAL A 272 SHEET 6 B 6 ASP A 312 VAL A 315 1 O ILE A 314 N THR A 299 SHEET 1 C 6 TYR A 395 PHE A 397 0 SHEET 2 C 6 ILE A 371 GLU A 375 1 N ASN A 374 O TYR A 396 SHEET 3 C 6 VAL A 422 GLY A 427 1 O VAL A 425 N LEU A 373 SHEET 4 C 6 ILE A 449 ASN A 454 1 O VAL A 451 N ALA A 424 SHEET 5 C 6 VAL A 517 SER A 522 1 O VAL A 521 N ILE A 452 SHEET 6 C 6 GLN A 493 ALA A 497 1 N ALA A 497 O GLU A 520 LINK O GLU A 37 CA CA A 602 1555 1555 2.37 LINK O ASN A 117 NA NA A 603 1555 1555 2.71 LINK O LEU A 118 NA NA A 603 1555 1555 2.46 LINK O ARG A 120 NA NA A 603 1555 1555 2.50 LINK OD1 ASP A 428 CA CA A 601 1555 1555 2.39 LINK OD1 ASN A 455 CA CA A 601 1555 1555 2.40 LINK O THR A 457 CA CA A 601 1555 1555 2.36 LINK CA CA A 601 O12 TZD A 606 1555 1555 2.31 LINK CA CA A 601 O21 TZD A 606 1555 1555 2.37 LINK CA CA A 601 O HOH A 724 1555 1555 2.40 LINK CA CA A 602 O HOH A 898 1555 1555 2.60 LINK CA CA A 602 O HOH A1051 1555 1555 2.79 LINK CA CA A 602 O HOH A1072 1555 1555 3.07 LINK CA CA A 602 O HOH A1103 1555 1555 2.92 LINK CA CA A 602 O HOH A1118 1555 1555 2.88 LINK CA CA A 602 O HOH A1168 1555 1555 2.95 CISPEP 1 ARG A 120 PRO A 121 0 14.25 CISPEP 2 ALA A 149 PRO A 150 0 -8.77 CISPEP 3 VAL A 277 PHE A 278 0 -19.00 SITE 1 AC1 5 ASP A 428 ASN A 455 THR A 457 TZD A 606 SITE 2 AC1 5 HOH A 724 SITE 1 AC2 9 GLU A 37 ASP A 364 HOH A 775 HOH A 898 SITE 2 AC2 9 HOH A1051 HOH A1072 HOH A1103 HOH A1118 SITE 3 AC2 9 HOH A1168 SITE 1 AC3 3 ASN A 117 LEU A 118 ARG A 120 SITE 1 AC4 6 ALA A 196 ARG A 294 ILE A 296 ASP A 312 SITE 2 AC4 6 HOH A 785 HOH A1126 SITE 1 AC5 8 LEU A 43 GLN A 443 GLY A 475 LEU A 476 SITE 2 AC5 8 ASP A 477 HOH A1031 HOH A1128 HOH A1217 SITE 1 AC6 25 ASN A 23 PRO A 24 GLY A 25 GLU A 47 SITE 2 AC6 25 HIS A 70 ASN A 77 GLU A 375 THR A 377 SITE 3 AC6 25 SER A 378 GLY A 401 GLY A 402 SER A 403 SITE 4 AC6 25 GLY A 427 ASP A 428 GLY A 429 SER A 430 SITE 5 AC6 25 TYR A 433 ASN A 455 THR A 457 TYR A 458 SITE 6 AC6 25 GLY A 459 ALA A 460 CA A 601 HOH A 730 SITE 7 AC6 25 HOH A1226 CRYST1 81.519 95.795 137.162 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012267 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010439 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007291 0.00000