data_4GOS # _entry.id 4GOS # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.329 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4GOS RCSB RCSB074451 WWPDB D_1000074451 # _pdbx_database_related.db_name TargetTrack _pdbx_database_related.db_id NYSGRC-006272 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 4GOS _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2012-08-20 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Vigdorovich, V.' 1 'Ramagopal, U.' 2 'Bhosle, R.' 3 'Toro, R.' 4 'Nathenson, S.G.' 5 'Almo, S.C.' 6 'New York Structural Genomics Research Consortium (NYSGRC)' 7 'Atoms-to-Animals: The Immune Function Network (IFN)' 8 # _citation.id primary _citation.title 'Structure and cancer immunotherapy of the B7 family member B7x.' _citation.journal_abbrev 'Cell Rep' _citation.journal_volume 9 _citation.page_first 1089 _citation.page_last 1098 _citation.year 2014 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 2211-1247 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 25437562 _citation.pdbx_database_id_DOI 10.1016/j.celrep.2014.09.053 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Jeon, H.' 1 ? primary 'Vigdorovich, V.' 2 ? primary 'Garrett-Thomson, S.C.' 3 ? primary 'Janakiram, M.' 4 ? primary 'Ramagopal, U.A.' 5 ? primary 'Abadi, Y.M.' 6 ? primary 'Lee, J.S.' 7 ? primary 'Scandiuzzi, L.' 8 ? primary 'Ohaegbulam, K.C.' 9 ? primary 'Chinai, J.M.' 10 ? primary 'Zhao, R.' 11 ? primary 'Yao, Y.' 12 ? primary 'Mao, Y.' 13 ? primary 'Sparano, J.A.' 14 ? primary 'Almo, S.C.' 15 ? primary 'Zang, X.' 16 ? # _cell.length_a 46.500 _cell.length_b 46.500 _cell.length_c 115.770 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 4GOS _cell.pdbx_unique_axis ? _cell.Z_PDB 8 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.entry_id 4GOS _symmetry.Int_Tables_number 96 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'V-set domain-containing T-cell activation inhibitor 1' 13722.437 1 ? ? ? ? 2 branched man ;alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose ; 910.823 1 ? ? ? ? 3 water nat water 18.015 111 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'B7h.5, Immune costimulatory protein B7-H4, Protein B7S1, T-cell costimulatory molecule B7x' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GISGRHSITVTTVASAGNIGEDGILSCTFEPDIKLSDIVIQWLKEGVLGLVHEFKEGKDELSEQDEMFRGRTAVFADQVI VGNASLRLKNVQLTDAGTYKCYIITSKGKGNANLEYKTGHHHHHH ; _entity_poly.pdbx_seq_one_letter_code_can ;GISGRHSITVTTVASAGNIGEDGILSCTFEPDIKLSDIVIQWLKEGVLGLVHEFKEGKDELSEQDEMFRGRTAVFADQVI VGNASLRLKNVQLTDAGTYKCYIITSKGKGNANLEYKTGHHHHHH ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier NYSGRC-006272 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 ILE n 1 3 SER n 1 4 GLY n 1 5 ARG n 1 6 HIS n 1 7 SER n 1 8 ILE n 1 9 THR n 1 10 VAL n 1 11 THR n 1 12 THR n 1 13 VAL n 1 14 ALA n 1 15 SER n 1 16 ALA n 1 17 GLY n 1 18 ASN n 1 19 ILE n 1 20 GLY n 1 21 GLU n 1 22 ASP n 1 23 GLY n 1 24 ILE n 1 25 LEU n 1 26 SER n 1 27 CYS n 1 28 THR n 1 29 PHE n 1 30 GLU n 1 31 PRO n 1 32 ASP n 1 33 ILE n 1 34 LYS n 1 35 LEU n 1 36 SER n 1 37 ASP n 1 38 ILE n 1 39 VAL n 1 40 ILE n 1 41 GLN n 1 42 TRP n 1 43 LEU n 1 44 LYS n 1 45 GLU n 1 46 GLY n 1 47 VAL n 1 48 LEU n 1 49 GLY n 1 50 LEU n 1 51 VAL n 1 52 HIS n 1 53 GLU n 1 54 PHE n 1 55 LYS n 1 56 GLU n 1 57 GLY n 1 58 LYS n 1 59 ASP n 1 60 GLU n 1 61 LEU n 1 62 SER n 1 63 GLU n 1 64 GLN n 1 65 ASP n 1 66 GLU n 1 67 MET n 1 68 PHE n 1 69 ARG n 1 70 GLY n 1 71 ARG n 1 72 THR n 1 73 ALA n 1 74 VAL n 1 75 PHE n 1 76 ALA n 1 77 ASP n 1 78 GLN n 1 79 VAL n 1 80 ILE n 1 81 VAL n 1 82 GLY n 1 83 ASN n 1 84 ALA n 1 85 SER n 1 86 LEU n 1 87 ARG n 1 88 LEU n 1 89 LYS n 1 90 ASN n 1 91 VAL n 1 92 GLN n 1 93 LEU n 1 94 THR n 1 95 ASP n 1 96 ALA n 1 97 GLY n 1 98 THR n 1 99 TYR n 1 100 LYS n 1 101 CYS n 1 102 TYR n 1 103 ILE n 1 104 ILE n 1 105 THR n 1 106 SER n 1 107 LYS n 1 108 GLY n 1 109 LYS n 1 110 GLY n 1 111 ASN n 1 112 ALA n 1 113 ASN n 1 114 LEU n 1 115 GLU n 1 116 TYR n 1 117 LYS n 1 118 THR n 1 119 GLY n 1 120 HIS n 1 121 HIS n 1 122 HIS n 1 123 HIS n 1 124 HIS n 1 125 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'B7-H4, B7H4, B7S1, B7x, UNQ659/PRO1291, VTCN1' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name 'fruit fly' _entity_src_gen.pdbx_host_org_scientific_name 'Drosophila melanogaster' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 7227 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'Schneider 2 cell line' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name 'modified pMT-BiP-His' _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code VTCN1_HUMAN _struct_ref.pdbx_db_accession Q7Z7D3 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;GISGRHSITVTTVASAGNIGEDGILSCTFEPDIKLSDIVIQWLKEGVLGLVHEFKEGKDELSEQDEMFRGRTAVFADQVI VGNASLRLKNVQLTDAGTYKCYIITSKGKGNANLEYKTG ; _struct_ref.pdbx_align_begin 30 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4GOS _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 119 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q7Z7D3 _struct_ref_seq.db_align_beg 30 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 148 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 30 _struct_ref_seq.pdbx_auth_seq_align_end 148 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4GOS HIS A 120 ? UNP Q7Z7D3 ? ? 'expression tag' 149 1 1 4GOS HIS A 121 ? UNP Q7Z7D3 ? ? 'expression tag' 150 2 1 4GOS HIS A 122 ? UNP Q7Z7D3 ? ? 'expression tag' 151 3 1 4GOS HIS A 123 ? UNP Q7Z7D3 ? ? 'expression tag' 152 4 1 4GOS HIS A 124 ? UNP Q7Z7D3 ? ? 'expression tag' 153 5 1 4GOS HIS A 125 ? UNP Q7Z7D3 ? ? 'expression tag' 154 6 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 BMA 'D-saccharide, beta linking' . beta-D-mannopyranose ? 'C6 H12 O6' 180.156 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MAN 'D-saccharide, alpha linking' . alpha-D-mannopyranose ? 'C6 H12 O6' 180.156 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ? 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 2 _exptl.entry_id 4GOS _exptl.method 'X-RAY DIFFRACTION' # loop_ _exptl_crystal.id _exptl_crystal.density_Matthews _exptl_crystal.density_meas _exptl_crystal.density_percent_sol _exptl_crystal.description _exptl_crystal.F_000 _exptl_crystal.preparation 1 2.28 ? 46.06 ? ? ? 2 ? ? ? ? ? ? # loop_ _exptl_crystal_grow.crystal_id _exptl_crystal_grow.method _exptl_crystal_grow.pH _exptl_crystal_grow.temp _exptl_crystal_grow.pdbx_details _exptl_crystal_grow.temp_details _exptl_crystal_grow.pdbx_pH_range 1 'VAPOR DIFFUSION' 7.0 291 '200 mM tri-Potassium citrate, 2.2 M ammonium sulfate, pH 7.0, VAPOR DIFFUSION, temperature 291K' ? ? 2 'VAPOR DIFFUSION' 7.0 291 '200 mM tri-Potassium citrate, 2.2 M ammonium sulfate, I3C (magic triangle) soak, pH 7.0, VAPOR DIFFUSION, temperature 291K' ? ? # loop_ _diffrn.id _diffrn.ambient_temp _diffrn.ambient_temp_details _diffrn.crystal_id 1 100 ? 1 2 ? ? 2 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2012-06-08 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'Si crystal' _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 1.0750 1.0 2 1.5402 1.0 # loop_ _diffrn_source.diffrn_id _diffrn_source.source _diffrn_source.type _diffrn_source.pdbx_wavelength_list _diffrn_source.pdbx_wavelength _diffrn_source.pdbx_synchrotron_site _diffrn_source.pdbx_synchrotron_beamline 1 SYNCHROTRON 'NSLS BEAMLINE X29A' '1.0750, 1.5402' ? NSLS X29A 2 ? ? ? ? NSLS X29A # _reflns.entry_id 4GOS _reflns.d_resolution_high 1.59 _reflns.d_resolution_low 43.149 _reflns.number_all 17917 _reflns.number_obs 16143 _reflns.pdbx_netI_over_sigmaI 17.700 _reflns.pdbx_Rsym_value 0.088 _reflns.pdbx_redundancy 13.300 _reflns.percent_possible_obs 90.100 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.pdbx_Rmerge_I_obs ? _reflns.B_iso_Wilson_estimate 13.046 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1,2 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.590 1.680 ? 34525 ? ? 1.600 0.489 ? 13.500 ? 2548 100.000 1 1,2 1.680 1.780 ? 30517 ? ? 2.400 0.315 ? 14.100 ? 2159 89.600 2 1,2 1.780 1.900 ? 29235 ? ? 3.800 0.198 ? 13.900 ? 2109 93.000 3 1,2 1.900 2.050 ? 22648 ? ? 5.300 0.128 ? 13.400 ? 1687 78.800 4 1,2 2.050 2.250 ? 21182 ? ? 6.100 0.113 ? 13.100 ? 1616 81.900 5 1,2 2.250 2.520 ? 21479 ? ? 7.600 0.088 ? 12.800 ? 1674 92.900 6 1,2 2.520 2.900 ? 18089 ? ? 8.500 0.073 ? 12.500 ? 1449 89.900 7 1,2 2.900 3.560 ? 15743 ? ? 8.700 0.070 ? 12.200 ? 1286 93.500 8 1,2 3.560 5.030 ? 11980 ? ? 11.300 0.053 ? 12.700 ? 942 85.500 9 1,2 5.030 38.590 ? 8555 ? ? 13.900 0.042 ? 12.700 ? 673 98.900 10 1,2 # _refine.entry_id 4GOS _refine.ls_d_res_high 1.5900 _refine.ls_d_res_low 19.9100 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 89.8200 _refine.ls_number_reflns_obs 15194 _refine.ls_number_reflns_all 16916 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS; U VALUES HAVE BEEN REFINED INDIVIDUALLY' _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1750 _refine.ls_R_factor_R_work 0.1741 _refine.ls_wR_factor_R_work 0.1770 _refine.ls_R_factor_R_free 0.1916 _refine.ls_wR_factor_R_free 0.1935 _refine.ls_percent_reflns_R_free 5.2000 _refine.ls_number_reflns_R_free 837 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 15.8718 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] -0.0200 _refine.aniso_B[2][2] -0.0200 _refine.aniso_B[3][3] 0.0400 _refine.aniso_B[1][2] -0.0000 _refine.aniso_B[1][3] -0.0000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI 0.0905 _refine.overall_SU_R_free 0.0847 _refine.pdbx_overall_ESU_R 0.0900 _refine.pdbx_overall_ESU_R_Free 0.0850 _refine.overall_SU_ML 0.0440 _refine.overall_SU_B 1.2160 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.pdbx_solvent_vdw_probe_radii 1.2000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SIRAS _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set 0.9077 _refine.B_iso_max 46.490 _refine.B_iso_min 8.820 _refine.pdbx_overall_phase_error ? _refine.occupancy_max 1.000 _refine.occupancy_min 0.500 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1,2 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 871 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 61 _refine_hist.number_atoms_solvent 111 _refine_hist.number_atoms_total 1043 _refine_hist.d_res_high 1.5900 _refine_hist.d_res_low 19.9100 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 960 0.009 0.020 ? ? 'X-RAY DIFFRACTION' r_bond_other_d 917 0.002 0.020 ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 1307 1.474 2.045 ? ? 'X-RAY DIFFRACTION' r_angle_other_deg 2102 0.725 3.002 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 118 6.174 5.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 37 32.737 25.946 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 164 11.609 15.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 3 27.761 15.000 ? ? 'X-RAY DIFFRACTION' r_chiral_restr 168 0.085 0.200 ? ? 'X-RAY DIFFRACTION' r_gen_planes_refined 1027 0.005 0.020 ? ? 'X-RAY DIFFRACTION' r_gen_planes_other 188 0.001 0.020 ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.d_res_high 1.5910 _refine_ls_shell.d_res_low 1.6320 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 99.2900 _refine_ls_shell.number_reflns_R_work 1198 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.2320 _refine_ls_shell.R_factor_R_free 0.2260 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 68 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 1266 _refine_ls_shell.number_reflns_obs 1198 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 4GOS _struct.title 'Crystal structure of human B7-H4 IgV-like domain' _struct.pdbx_descriptor 'V-set domain-containing T-cell activation inhibitor 1' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4GOS _struct_keywords.text ;IMMUNOGLOBULIN DOMAIN, GLYCOPROTEIN, DISULFIDE BOND, IMMUNITY, ADAPTIVE IMMUNITY, Structural Genomics, PSI-Biology, Protein Structure Initiative, New York Structural Genomics Research Consortium, NYSGRC, IMMUNOGLOBULIN VARIABLE-LIKE DOMAIN, CELL SURFACE, IMMUNE SYSTEM, Atoms-to-Animals: The Immune Function Network, IFN ; _struct_keywords.pdbx_keywords 'IMMUNE SYSTEM' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.details 'probable monomer' # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LYS A 34 ? ASP A 37 ? LYS A 63 ASP A 66 5 ? 4 HELX_P HELX_P2 2 ASP A 65 ? ARG A 69 ? ASP A 94 ARG A 98 5 ? 5 HELX_P HELX_P3 3 GLN A 78 ? GLY A 82 ? GLN A 107 GLY A 111 5 ? 5 HELX_P HELX_P4 4 GLN A 92 ? ALA A 96 ? GLN A 121 ALA A 125 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 27 SG ? ? ? 1_555 A CYS 101 SG ? ? A CYS 56 A CYS 130 1_555 ? ? ? ? ? ? ? 2.047 ? ? covale1 covale one ? A ASN 83 ND2 ? ? ? 1_555 B NAG . C1 ? ? A ASN 112 B NAG 1 1_555 ? ? ? ? ? ? ? 1.450 ? N-Glycosylation covale2 covale both ? B NAG . O4 ? ? ? 1_555 B NAG . C1 ? ? B NAG 1 B NAG 2 1_555 ? ? ? ? ? ? ? 1.433 ? ? covale3 covale both ? B NAG . O4 ? ? ? 1_555 B BMA . C1 ? ? B NAG 2 B BMA 3 1_555 ? ? ? ? ? ? ? 1.433 ? ? covale4 covale both ? B BMA . O3 ? ? ? 1_555 B MAN . C1 ? ? B BMA 3 B MAN 4 1_555 ? ? ? ? ? ? ? 1.442 ? ? covale5 covale both ? B BMA . O6 ? ? ? 1_555 B MAN . C1 ? ? B BMA 3 B MAN 5 1_555 ? ? ? ? ? ? ? 1.425 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 6 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 10 ? VAL A 13 ? VAL A 39 VAL A 42 A 2 GLY A 23 ? PHE A 29 ? GLY A 52 PHE A 58 A 3 LEU A 86 ? LEU A 88 ? LEU A 115 LEU A 117 A 4 THR A 72 ? VAL A 74 ? THR A 101 VAL A 103 B 1 SER A 15 ? ASN A 18 ? SER A 44 ASN A 47 B 2 GLY A 108 ? GLY A 119 ? GLY A 137 GLY A 148 B 3 GLY A 97 ? THR A 105 ? GLY A 126 THR A 134 B 4 VAL A 39 ? LYS A 44 ? VAL A 68 LYS A 73 B 5 HIS A 52 ? LYS A 55 ? HIS A 81 LYS A 84 B 6 LYS A 58 ? ASP A 59 ? LYS A 87 ASP A 88 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N THR A 11 ? N THR A 40 O THR A 28 ? O THR A 57 A 2 3 N GLY A 23 ? N GLY A 52 O LEU A 88 ? O LEU A 117 A 3 4 O ARG A 87 ? O ARG A 116 N ALA A 73 ? N ALA A 102 B 1 2 N GLY A 17 ? N GLY A 46 O LYS A 117 ? O LYS A 146 B 2 3 O LEU A 114 ? O LEU A 143 N TYR A 99 ? N TYR A 128 B 3 4 O TYR A 102 ? O TYR A 131 N GLN A 41 ? N GLN A 70 B 4 5 N ILE A 40 ? N ILE A 69 O PHE A 54 ? O PHE A 83 B 5 6 N LYS A 55 ? N LYS A 84 O LYS A 58 ? O LYS A 87 # _atom_sites.entry_id 4GOS _atom_sites.fract_transf_matrix[1][1] 0.021505 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.021505 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008638 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 30 ? ? ? A . n A 1 2 ILE 2 31 ? ? ? A . n A 1 3 SER 3 32 ? ? ? A . n A 1 4 GLY 4 33 ? ? ? A . n A 1 5 ARG 5 34 ? ? ? A . n A 1 6 HIS 6 35 35 HIS HIS A . n A 1 7 SER 7 36 36 SER SER A . n A 1 8 ILE 8 37 37 ILE ILE A . n A 1 9 THR 9 38 38 THR THR A . n A 1 10 VAL 10 39 39 VAL VAL A . n A 1 11 THR 11 40 40 THR THR A . n A 1 12 THR 12 41 41 THR THR A . n A 1 13 VAL 13 42 42 VAL VAL A . n A 1 14 ALA 14 43 43 ALA ALA A . n A 1 15 SER 15 44 44 SER SER A . n A 1 16 ALA 16 45 45 ALA ALA A . n A 1 17 GLY 17 46 46 GLY GLY A . n A 1 18 ASN 18 47 47 ASN ASN A . n A 1 19 ILE 19 48 48 ILE ILE A . n A 1 20 GLY 20 49 49 GLY GLY A . n A 1 21 GLU 21 50 50 GLU GLU A . n A 1 22 ASP 22 51 51 ASP ASP A . n A 1 23 GLY 23 52 52 GLY GLY A . n A 1 24 ILE 24 53 53 ILE ILE A . n A 1 25 LEU 25 54 54 LEU LEU A . n A 1 26 SER 26 55 55 SER SER A . n A 1 27 CYS 27 56 56 CYS CYS A . n A 1 28 THR 28 57 57 THR THR A . n A 1 29 PHE 29 58 58 PHE PHE A . n A 1 30 GLU 30 59 59 GLU GLU A . n A 1 31 PRO 31 60 60 PRO PRO A . n A 1 32 ASP 32 61 61 ASP ASP A . n A 1 33 ILE 33 62 62 ILE ILE A . n A 1 34 LYS 34 63 63 LYS LYS A . n A 1 35 LEU 35 64 64 LEU LEU A . n A 1 36 SER 36 65 65 SER SER A . n A 1 37 ASP 37 66 66 ASP ASP A . n A 1 38 ILE 38 67 67 ILE ILE A . n A 1 39 VAL 39 68 68 VAL VAL A . n A 1 40 ILE 40 69 69 ILE ILE A . n A 1 41 GLN 41 70 70 GLN GLN A . n A 1 42 TRP 42 71 71 TRP TRP A . n A 1 43 LEU 43 72 72 LEU LEU A . n A 1 44 LYS 44 73 73 LYS LYS A . n A 1 45 GLU 45 74 74 GLU GLU A . n A 1 46 GLY 46 75 75 GLY GLY A . n A 1 47 VAL 47 76 76 VAL VAL A . n A 1 48 LEU 48 77 77 LEU LEU A . n A 1 49 GLY 49 78 78 GLY GLY A . n A 1 50 LEU 50 79 79 LEU LEU A . n A 1 51 VAL 51 80 80 VAL VAL A . n A 1 52 HIS 52 81 81 HIS HIS A . n A 1 53 GLU 53 82 82 GLU GLU A . n A 1 54 PHE 54 83 83 PHE PHE A . n A 1 55 LYS 55 84 84 LYS LYS A . n A 1 56 GLU 56 85 85 GLU GLU A . n A 1 57 GLY 57 86 86 GLY GLY A . n A 1 58 LYS 58 87 87 LYS LYS A . n A 1 59 ASP 59 88 88 ASP ASP A . n A 1 60 GLU 60 89 89 GLU GLU A . n A 1 61 LEU 61 90 90 LEU LEU A . n A 1 62 SER 62 91 91 SER SER A . n A 1 63 GLU 63 92 92 GLU GLU A . n A 1 64 GLN 64 93 93 GLN GLN A . n A 1 65 ASP 65 94 94 ASP ASP A . n A 1 66 GLU 66 95 95 GLU GLU A . n A 1 67 MET 67 96 96 MET MET A . n A 1 68 PHE 68 97 97 PHE PHE A . n A 1 69 ARG 69 98 98 ARG ARG A . n A 1 70 GLY 70 99 99 GLY GLY A . n A 1 71 ARG 71 100 100 ARG ARG A . n A 1 72 THR 72 101 101 THR THR A . n A 1 73 ALA 73 102 102 ALA ALA A . n A 1 74 VAL 74 103 103 VAL VAL A . n A 1 75 PHE 75 104 104 PHE PHE A . n A 1 76 ALA 76 105 105 ALA ALA A . n A 1 77 ASP 77 106 106 ASP ASP A . n A 1 78 GLN 78 107 107 GLN GLN A . n A 1 79 VAL 79 108 108 VAL VAL A . n A 1 80 ILE 80 109 109 ILE ILE A . n A 1 81 VAL 81 110 110 VAL VAL A . n A 1 82 GLY 82 111 111 GLY GLY A . n A 1 83 ASN 83 112 112 ASN ASN A . n A 1 84 ALA 84 113 113 ALA ALA A . n A 1 85 SER 85 114 114 SER SER A . n A 1 86 LEU 86 115 115 LEU LEU A . n A 1 87 ARG 87 116 116 ARG ARG A . n A 1 88 LEU 88 117 117 LEU LEU A . n A 1 89 LYS 89 118 118 LYS LYS A . n A 1 90 ASN 90 119 119 ASN ASN A . n A 1 91 VAL 91 120 120 VAL VAL A . n A 1 92 GLN 92 121 121 GLN GLN A . n A 1 93 LEU 93 122 122 LEU LEU A . n A 1 94 THR 94 123 123 THR THR A . n A 1 95 ASP 95 124 124 ASP ASP A . n A 1 96 ALA 96 125 125 ALA ALA A . n A 1 97 GLY 97 126 126 GLY GLY A . n A 1 98 THR 98 127 127 THR THR A . n A 1 99 TYR 99 128 128 TYR TYR A . n A 1 100 LYS 100 129 129 LYS LYS A . n A 1 101 CYS 101 130 130 CYS CYS A . n A 1 102 TYR 102 131 131 TYR TYR A . n A 1 103 ILE 103 132 132 ILE ILE A . n A 1 104 ILE 104 133 133 ILE ILE A . n A 1 105 THR 105 134 134 THR THR A . n A 1 106 SER 106 135 135 SER SER A . n A 1 107 LYS 107 136 136 LYS LYS A . n A 1 108 GLY 108 137 137 GLY GLY A . n A 1 109 LYS 109 138 138 LYS LYS A . n A 1 110 GLY 110 139 139 GLY GLY A . n A 1 111 ASN 111 140 140 ASN ASN A . n A 1 112 ALA 112 141 141 ALA ALA A . n A 1 113 ASN 113 142 142 ASN ASN A . n A 1 114 LEU 114 143 143 LEU LEU A . n A 1 115 GLU 115 144 144 GLU GLU A . n A 1 116 TYR 116 145 145 TYR TYR A . n A 1 117 LYS 117 146 146 LYS LYS A . n A 1 118 THR 118 147 147 THR THR A . n A 1 119 GLY 119 148 148 GLY GLY A . n A 1 120 HIS 120 149 149 HIS HIS A . n A 1 121 HIS 121 150 ? ? ? A . n A 1 122 HIS 122 151 ? ? ? A . n A 1 123 HIS 123 152 ? ? ? A . n A 1 124 HIS 124 153 ? ? ? A . n A 1 125 HIS 125 154 ? ? ? A . n # loop_ _pdbx_SG_project.id _pdbx_SG_project.project_name _pdbx_SG_project.full_name_of_center _pdbx_SG_project.initial_of_center 1 PSI:Biology 'New York Structural Genomics Research Consortium' NYSGRC 2 PSI:Biology 'Atoms-to-Animals: The Immune Function Network' IFN # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 HOH 1 301 169 HOH HOH A . C 3 HOH 2 302 170 HOH HOH A . C 3 HOH 3 303 171 HOH HOH A . C 3 HOH 4 304 172 HOH HOH A . C 3 HOH 5 305 1 HOH HOH A . C 3 HOH 6 306 3 HOH HOH A . C 3 HOH 7 307 4 HOH HOH A . C 3 HOH 8 308 5 HOH HOH A . C 3 HOH 9 309 8 HOH HOH A . C 3 HOH 10 310 12 HOH HOH A . C 3 HOH 11 311 14 HOH HOH A . C 3 HOH 12 312 16 HOH HOH A . C 3 HOH 13 313 17 HOH HOH A . C 3 HOH 14 314 18 HOH HOH A . C 3 HOH 15 315 19 HOH HOH A . C 3 HOH 16 316 20 HOH HOH A . C 3 HOH 17 317 22 HOH HOH A . C 3 HOH 18 318 23 HOH HOH A . C 3 HOH 19 319 24 HOH HOH A . C 3 HOH 20 320 26 HOH HOH A . C 3 HOH 21 321 27 HOH HOH A . C 3 HOH 22 322 28 HOH HOH A . C 3 HOH 23 323 30 HOH HOH A . C 3 HOH 24 324 31 HOH HOH A . C 3 HOH 25 325 32 HOH HOH A . C 3 HOH 26 326 34 HOH HOH A . C 3 HOH 27 327 36 HOH HOH A . C 3 HOH 28 328 41 HOH HOH A . C 3 HOH 29 329 42 HOH HOH A . C 3 HOH 30 330 43 HOH HOH A . C 3 HOH 31 331 44 HOH HOH A . C 3 HOH 32 332 45 HOH HOH A . C 3 HOH 33 333 46 HOH HOH A . C 3 HOH 34 334 47 HOH HOH A . C 3 HOH 35 335 48 HOH HOH A . C 3 HOH 36 336 49 HOH HOH A . C 3 HOH 37 337 50 HOH HOH A . C 3 HOH 38 338 52 HOH HOH A . C 3 HOH 39 339 53 HOH HOH A . C 3 HOH 40 340 54 HOH HOH A . C 3 HOH 41 341 55 HOH HOH A . C 3 HOH 42 342 57 HOH HOH A . C 3 HOH 43 343 59 HOH HOH A . C 3 HOH 44 344 69 HOH HOH A . C 3 HOH 45 345 71 HOH HOH A . C 3 HOH 46 346 77 HOH HOH A . C 3 HOH 47 347 78 HOH HOH A . C 3 HOH 48 348 79 HOH HOH A . C 3 HOH 49 349 80 HOH HOH A . C 3 HOH 50 350 83 HOH HOH A . C 3 HOH 51 351 84 HOH HOH A . C 3 HOH 52 352 85 HOH HOH A . C 3 HOH 53 353 87 HOH HOH A . C 3 HOH 54 354 88 HOH HOH A . C 3 HOH 55 355 89 HOH HOH A . C 3 HOH 56 356 90 HOH HOH A . C 3 HOH 57 357 91 HOH HOH A . C 3 HOH 58 358 92 HOH HOH A . C 3 HOH 59 359 93 HOH HOH A . C 3 HOH 60 360 94 HOH HOH A . C 3 HOH 61 361 95 HOH HOH A . C 3 HOH 62 362 97 HOH HOH A . C 3 HOH 63 363 98 HOH HOH A . C 3 HOH 64 364 100 HOH HOH A . C 3 HOH 65 365 101 HOH HOH A . C 3 HOH 66 366 102 HOH HOH A . C 3 HOH 67 367 104 HOH HOH A . C 3 HOH 68 368 105 HOH HOH A . C 3 HOH 69 369 109 HOH HOH A . C 3 HOH 70 370 112 HOH HOH A . C 3 HOH 71 371 113 HOH HOH A . C 3 HOH 72 372 114 HOH HOH A . C 3 HOH 73 373 116 HOH HOH A . C 3 HOH 74 374 117 HOH HOH A . C 3 HOH 75 375 118 HOH HOH A . C 3 HOH 76 376 119 HOH HOH A . C 3 HOH 77 377 120 HOH HOH A . C 3 HOH 78 378 121 HOH HOH A . C 3 HOH 79 379 122 HOH HOH A . C 3 HOH 80 380 123 HOH HOH A . C 3 HOH 81 381 124 HOH HOH A . C 3 HOH 82 382 125 HOH HOH A . C 3 HOH 83 383 126 HOH HOH A . C 3 HOH 84 384 127 HOH HOH A . C 3 HOH 85 385 128 HOH HOH A . C 3 HOH 86 386 129 HOH HOH A . C 3 HOH 87 387 131 HOH HOH A . C 3 HOH 88 388 132 HOH HOH A . C 3 HOH 89 389 133 HOH HOH A . C 3 HOH 90 390 135 HOH HOH A . C 3 HOH 91 391 136 HOH HOH A . C 3 HOH 92 392 137 HOH HOH A . C 3 HOH 93 393 139 HOH HOH A . C 3 HOH 94 394 141 HOH HOH A . C 3 HOH 95 395 142 HOH HOH A . C 3 HOH 96 396 143 HOH HOH A . C 3 HOH 97 397 145 HOH HOH A . C 3 HOH 98 398 147 HOH HOH A . C 3 HOH 99 399 149 HOH HOH A . C 3 HOH 100 400 150 HOH HOH A . C 3 HOH 101 401 152 HOH HOH A . C 3 HOH 102 402 154 HOH HOH A . C 3 HOH 103 403 158 HOH HOH A . C 3 HOH 104 404 159 HOH HOH A . C 3 HOH 105 405 160 HOH HOH A . C 3 HOH 106 406 162 HOH HOH A . C 3 HOH 107 407 163 HOH HOH A . C 3 HOH 108 408 164 HOH HOH A . C 3 HOH 109 409 166 HOH HOH A . C 3 HOH 110 410 167 HOH HOH A . C 3 HOH 111 411 168 HOH HOH A . # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id ASN _pdbx_struct_mod_residue.label_seq_id 83 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id ASN _pdbx_struct_mod_residue.auth_seq_id 112 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id ASN _pdbx_struct_mod_residue.details 'GLYCOSYLATION SITE' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 348 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id C _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-09-12 2 'Structure model' 1 1 2016-11-16 3 'Structure model' 2 0 2020-07-29 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 3 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Atomic model' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Database references' 5 3 'Structure model' 'Derived calculations' 6 3 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' atom_site 2 3 'Structure model' chem_comp 3 3 'Structure model' entity 4 3 'Structure model' pdbx_branch_scheme 5 3 'Structure model' pdbx_chem_comp_identifier 6 3 'Structure model' pdbx_entity_branch 7 3 'Structure model' pdbx_entity_branch_descriptor 8 3 'Structure model' pdbx_entity_branch_link 9 3 'Structure model' pdbx_entity_branch_list 10 3 'Structure model' pdbx_entity_nonpoly 11 3 'Structure model' pdbx_nonpoly_scheme 12 3 'Structure model' pdbx_struct_assembly_gen 13 3 'Structure model' pdbx_struct_special_symmetry 14 3 'Structure model' struct_asym 15 3 'Structure model' struct_conn 16 3 'Structure model' struct_ref_seq_dif 17 3 'Structure model' struct_site 18 3 'Structure model' struct_site_gen # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_atom_site.auth_asym_id' 2 3 'Structure model' '_atom_site.auth_seq_id' 3 3 'Structure model' '_atom_site.label_asym_id' 4 3 'Structure model' '_atom_site.label_entity_id' 5 3 'Structure model' '_chem_comp.name' 6 3 'Structure model' '_chem_comp.type' 7 3 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list' 8 3 'Structure model' '_pdbx_struct_special_symmetry.label_asym_id' 9 3 'Structure model' '_struct_conn.pdbx_dist_value' 10 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 11 3 'Structure model' '_struct_conn.pdbx_role' 12 3 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 13 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 14 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 15 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 16 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 17 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 18 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 19 3 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 20 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 21 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 22 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 23 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 24 3 'Structure model' '_struct_ref_seq_dif.details' # _diffrn_reflns.diffrn_id 1 _diffrn_reflns.pdbx_d_res_high 1.793 _diffrn_reflns.pdbx_d_res_low 43.145 _diffrn_reflns.pdbx_number_obs 10948 _diffrn_reflns.pdbx_Rmerge_I_obs ? _diffrn_reflns.pdbx_Rsym_value 0.161 _diffrn_reflns.pdbx_chi_squared ? _diffrn_reflns.av_sigmaI_over_netI 4.30 _diffrn_reflns.pdbx_redundancy 18.40 _diffrn_reflns.pdbx_percent_possible_obs 86.40 _diffrn_reflns.number 201521 _diffrn_reflns.pdbx_observed_criterion ? _diffrn_reflns.limit_h_max ? _diffrn_reflns.limit_h_min ? _diffrn_reflns.limit_k_max ? _diffrn_reflns.limit_k_min ? _diffrn_reflns.limit_l_max ? _diffrn_reflns.limit_l_min ? # loop_ _pdbx_diffrn_reflns_shell.diffrn_id _pdbx_diffrn_reflns_shell.d_res_high _pdbx_diffrn_reflns_shell.d_res_low _pdbx_diffrn_reflns_shell.number_obs _pdbx_diffrn_reflns_shell.rejects _pdbx_diffrn_reflns_shell.Rmerge_I_obs _pdbx_diffrn_reflns_shell.Rsym_value _pdbx_diffrn_reflns_shell.chi_squared _pdbx_diffrn_reflns_shell.redundancy _pdbx_diffrn_reflns_shell.percent_possible_obs 1 5.67 38.72 ? ? 0.069 0.069 ? 18.80 99.60 1 4.01 5.67 ? ? 0.062 0.062 ? 20.50 100.00 1 3.27 4.01 ? ? 0.084 0.084 ? 17.40 75.30 1 2.84 3.27 ? ? 0.099 0.099 ? 17.10 100.00 1 2.54 2.84 ? ? 0.152 0.152 ? 17.10 86.80 1 2.31 2.54 ? ? 0.208 0.208 ? 17.30 99.60 1 2.14 2.31 ? ? 0.408 0.408 ? 17.80 83.00 1 2.00 2.14 ? ? 0.472 0.472 ? 18.90 83.10 1 1.89 2.00 ? ? 1.016 1.016 ? 19.60 66.70 1 1.79 1.89 ? ? 1.792 1.792 ? 19.70 89.40 # loop_ _pdbx_phasing_MAD_set_site.id _pdbx_phasing_MAD_set_site.atom_type_symbol _pdbx_phasing_MAD_set_site.Cartn_x _pdbx_phasing_MAD_set_site.Cartn_y _pdbx_phasing_MAD_set_site.Cartn_z _pdbx_phasing_MAD_set_site.occupancy _pdbx_phasing_MAD_set_site.b_iso 1 S 30.992 23.737 10.724 1.00 20.00 2 S 33.251 24.087 16.194 0.58 20.00 3 S 28.327 27.525 14.529 0.34 20.00 4 S 30.695 43.659 17.143 0.16 20.00 5 S 28.033 21.911 1.079 0.15 20.00 6 S 30.508 18.504 2.543 0.14 20.00 7 S 33.445 45.949 15.446 0.10 20.00 8 S 32.369 22.256 5.436 0.08 20.00 9 S 32.418 23.803 23.980 0.08 20.00 10 S 28.911 45.261 11.786 0.06 20.00 11 S 37.866 54.336 8.500 0.02 20.00 # _phasing.method SIRAS # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 SCALA 3.3.20 2011/05/18 other 'Phil R. Evans' pre@mrc-lmb.cam.ac.uk 'data scaling' http://www.ccp4.ac.uk/dist/html/scala.html Fortran_77 ? 2 SHELX . ? package 'George M. Sheldrick' gsheldr@shelx.uni-ac.gwdg.de phasing http://shelx.uni-ac.gwdg.de/SHELX/ Fortran_77 ? 3 REFMAC . ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 4 PDB_EXTRACT 3.11 'April 22, 2011' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 5 CBASS . ? ? ? ? 'data collection' ? ? ? 6 MOSFLM . ? ? ? ? 'data reduction' ? ? ? 7 SHELXD . ? ? ? ? phasing ? ? ? # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A HIS 35 ? CG ? A HIS 6 CG 2 1 Y 1 A HIS 35 ? ND1 ? A HIS 6 ND1 3 1 Y 1 A HIS 35 ? CD2 ? A HIS 6 CD2 4 1 Y 1 A HIS 35 ? CE1 ? A HIS 6 CE1 5 1 Y 1 A HIS 35 ? NE2 ? A HIS 6 NE2 6 1 Y 1 A HIS 149 ? CG ? A HIS 120 CG 7 1 Y 1 A HIS 149 ? ND1 ? A HIS 120 ND1 8 1 Y 1 A HIS 149 ? CD2 ? A HIS 120 CD2 9 1 Y 1 A HIS 149 ? CE1 ? A HIS 120 CE1 10 1 Y 1 A HIS 149 ? NE2 ? A HIS 120 NE2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 30 ? A GLY 1 2 1 Y 1 A ILE 31 ? A ILE 2 3 1 Y 1 A SER 32 ? A SER 3 4 1 Y 1 A GLY 33 ? A GLY 4 5 1 Y 1 A ARG 34 ? A ARG 5 6 1 Y 1 A HIS 150 ? A HIS 121 7 1 Y 1 A HIS 151 ? A HIS 122 8 1 Y 1 A HIS 152 ? A HIS 123 9 1 Y 1 A HIS 153 ? A HIS 124 10 1 Y 1 A HIS 154 ? A HIS 125 # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero B 2 NAG 1 B NAG 1 B NAG 1 n B 2 NAG 2 B NAG 2 B NAG 2 n B 2 BMA 3 B BMA 3 B MAN 3 n B 2 MAN 4 B MAN 4 B MAN 4 n B 2 MAN 5 B MAN 5 B MAN 5 n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier BMA 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DManpb BMA 'COMMON NAME' GMML 1.0 b-D-mannopyranose BMA 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-Manp BMA 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Man MAN 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DManpa MAN 'COMMON NAME' GMML 1.0 a-D-mannopyranose MAN 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-D-Manp MAN 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Man NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 2 'DManpa1-3[DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-' 'Glycam Condensed Sequence' GMML 1.0 2 2 'WURCS=2.0/3,5,4/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5]/1-1-2-3-3/a4-b1_b4-c1_c3-d1_c6-e1' WURCS PDB2Glycan 1.1.0 3 2 '[]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-Manp]{[(3+1)][a-D-Manp]{}[(6+1)][a-D-Manp]{}}}}}' LINUCS PDB-CARE ? # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.value_order _pdbx_entity_branch_link.details 1 2 2 NAG C1 O1 1 NAG O4 HO4 sing ? 2 2 3 BMA C1 O1 2 NAG O4 HO4 sing ? 3 2 4 MAN C1 O1 3 BMA O3 HO3 sing ? 4 2 5 MAN C1 O1 3 BMA O6 HO6 sing ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 2 NAG 1 n 2 NAG 2 n 2 BMA 3 n 2 MAN 4 n 2 MAN 5 n # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #