data_4GPY # _entry.id 4GPY # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.388 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4GPY pdb_00004gpy 10.2210/pdb4gpy/pdb NDB NA2007 ? ? RCSB RCSB074491 ? ? WWPDB D_1000074491 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-04-03 2 'Structure model' 1 1 2013-07-17 3 'Structure model' 1 2 2024-03-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 4 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 5 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4GPY _pdbx_database_status.recvd_initial_deposition_date 2012-08-22 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 4F8U . unspecified PDB 4F8V . unspecified PDB 4GPW . unspecified PDB 4GPX . unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kondo, J.' 1 'Koganei, M.' 2 'Maianti, J.P.' 3 'Ly, V.L.' 4 'Hanessian, S.' 5 # _citation.id primary _citation.title ;Crystal structures of a bioactive 6'-hydroxy variant of sisomicin bound to the bacterial and protozoal ribosomal decoding sites ; _citation.journal_abbrev Chemmedchem _citation.journal_volume 8 _citation.page_first 733 _citation.page_last 739 _citation.year 2013 _citation.journal_id_ASTM ? _citation.country DE _citation.journal_id_ISSN 1860-7179 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23436717 _citation.pdbx_database_id_DOI 10.1002/cmdc.201200579 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Kondo, J.' 1 ? primary 'Koganei, M.' 2 ? primary 'Maianti, J.P.' 3 ? primary 'Ly, V.L.' 4 ? primary 'Hanessian, S.' 5 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;RNA (5'-R(*UP*UP*GP*CP*GP*UP*CP*AP*CP*GP*CP*CP*GP*GP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3') ; 7370.424 2 ? ? ? ? 2 non-polymer syn ;(1S,2S,3R,4S,6R)-4,6-diamino-3-{[(2S,3R)-3-amino-6-(hydroxymethyl)-3,4-dihydro-2H-pyran-2-yl]oxy}-2-hydroxycyclohexyl 3-deoxy-4-C-methyl-3-(methylamino)-beta-L-arabinopyranoside ; 448.511 2 ? ? ? ? 3 water nat water 18.015 36 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code UUGCGUCACGCCGGCGAAGUCGC _entity_poly.pdbx_seq_one_letter_code_can UUGCGUCACGCCGGCGAAGUCGC _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 ;(1S,2S,3R,4S,6R)-4,6-diamino-3-{[(2S,3R)-3-amino-6-(hydroxymethyl)-3,4-dihydro-2H-pyran-2-yl]oxy}-2-hydroxycyclohexyl 3-deoxy-4-C-methyl-3-(methylamino)-beta-L-arabinopyranoside ; 6HS 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 U n 1 2 U n 1 3 G n 1 4 C n 1 5 G n 1 6 U n 1 7 C n 1 8 A n 1 9 C n 1 10 G n 1 11 C n 1 12 C n 1 13 G n 1 14 G n 1 15 C n 1 16 G n 1 17 A n 1 18 A n 1 19 G n 1 20 U n 1 21 C n 1 22 G n 1 23 C n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 6HS non-polymer . ;(1S,2S,3R,4S,6R)-4,6-diamino-3-{[(2S,3R)-3-amino-6-(hydroxymethyl)-3,4-dihydro-2H-pyran-2-yl]oxy}-2-hydroxycyclohexyl 3-deoxy-4-C-methyl-3-(methylamino)-beta-L-arabinopyranoside ; "6'-hydroxysisomicin" 'C19 H36 N4 O8' 448.511 A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 U 1 1 ? ? ? A . n A 1 2 U 2 2 2 U U A . n A 1 3 G 3 3 3 G G A . n A 1 4 C 4 4 4 C C A . n A 1 5 G 5 5 5 G G A . n A 1 6 U 6 6 6 U U A . n A 1 7 C 7 7 7 C C A . n A 1 8 A 8 8 8 A A A . n A 1 9 C 9 9 9 C C A . n A 1 10 G 10 10 10 G G A . n A 1 11 C 11 11 11 C C A . n A 1 12 C 12 12 12 C C A . n A 1 13 G 13 13 13 G G A . n A 1 14 G 14 14 14 G G A . n A 1 15 C 15 15 15 C C A . n A 1 16 G 16 16 16 G G A . n A 1 17 A 17 17 17 A A A . n A 1 18 A 18 18 18 A A A . n A 1 19 G 19 19 19 G G A . n A 1 20 U 20 20 20 U U A . n A 1 21 C 21 21 21 C C A . n A 1 22 G 22 22 22 G G A . n A 1 23 C 23 23 23 C C A . n B 1 1 U 1 24 ? ? ? B . n B 1 2 U 2 25 25 U U B . n B 1 3 G 3 26 26 G G B . n B 1 4 C 4 27 27 C C B . n B 1 5 G 5 28 28 G G B . n B 1 6 U 6 29 29 U U B . n B 1 7 C 7 30 30 C C B . n B 1 8 A 8 31 31 A A B . n B 1 9 C 9 32 32 C C B . n B 1 10 G 10 33 33 G G B . n B 1 11 C 11 34 34 C C B . n B 1 12 C 12 35 35 C C B . n B 1 13 G 13 36 36 G G B . n B 1 14 G 14 37 37 G G B . n B 1 15 C 15 38 38 C C B . n B 1 16 G 16 39 39 G G B . n B 1 17 A 17 40 40 A A B . n B 1 18 A 18 41 41 A A B . n B 1 19 G 19 42 42 G G B . n B 1 20 U 20 43 43 U U B . n B 1 21 C 21 44 44 C C B . n B 1 22 G 22 45 45 G G B . n B 1 23 C 23 46 46 C C B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 6HS 1 101 50 6HS 6HS A . D 2 6HS 1 102 51 6HS 6HS A . E 3 HOH 1 201 106 HOH HOH A . E 3 HOH 2 202 107 HOH HOH A . E 3 HOH 3 203 108 HOH HOH A . E 3 HOH 4 204 109 HOH HOH A . E 3 HOH 5 205 110 HOH HOH A . E 3 HOH 6 206 114 HOH HOH A . E 3 HOH 7 207 117 HOH HOH A . E 3 HOH 8 208 121 HOH HOH A . E 3 HOH 9 209 125 HOH HOH A . E 3 HOH 10 210 127 HOH HOH A . E 3 HOH 11 211 133 HOH HOH A . F 3 HOH 1 201 105 HOH HOH B . F 3 HOH 2 202 101 HOH HOH B . F 3 HOH 3 203 102 HOH HOH B . F 3 HOH 4 204 103 HOH HOH B . F 3 HOH 5 205 104 HOH HOH B . F 3 HOH 6 206 111 HOH HOH B . F 3 HOH 7 207 112 HOH HOH B . F 3 HOH 8 208 113 HOH HOH B . F 3 HOH 9 209 115 HOH HOH B . F 3 HOH 10 210 116 HOH HOH B . F 3 HOH 11 211 118 HOH HOH B . F 3 HOH 12 212 119 HOH HOH B . F 3 HOH 13 213 120 HOH HOH B . F 3 HOH 14 214 122 HOH HOH B . F 3 HOH 15 215 123 HOH HOH B . F 3 HOH 16 216 124 HOH HOH B . F 3 HOH 17 217 126 HOH HOH B . F 3 HOH 18 218 128 HOH HOH B . F 3 HOH 19 219 129 HOH HOH B . F 3 HOH 20 220 130 HOH HOH B . F 3 HOH 21 221 131 HOH HOH B . F 3 HOH 22 222 132 HOH HOH B . F 3 HOH 23 223 134 HOH HOH B . F 3 HOH 24 224 135 HOH HOH B . F 3 HOH 25 225 136 HOH HOH B . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal ADSC 'data collection' Quantum ? 1 PHENIX 'model building' . ? 2 CNS refinement 1.3 ? 3 CrystalClear 'data reduction' . ? 4 CrystalClear 'data scaling' . ? 5 PHENIX phasing . ? 6 # _cell.entry_id 4GPY _cell.length_a 33.742 _cell.length_b 84.715 _cell.length_c 47.770 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4GPY _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? # _exptl.entry_id 4GPY _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.32 _exptl_crystal.density_percent_sol 46.89 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_details 'Na Cacodylate, Spermine, NaCl, MPD , pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 210' _diffrn_detector.pdbx_collection_date 2012-06-16 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'PHOTON FACTORY BEAMLINE AR-NW12A' _diffrn_source.pdbx_synchrotron_site 'Photon Factory' _diffrn_source.pdbx_synchrotron_beamline AR-NW12A _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.0 # _reflns.entry_id 4GPY _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 47.8 _reflns.d_resolution_high 2.8 _reflns.number_obs 3348 _reflns.number_all ? _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _refine.entry_id 4GPY _refine.ls_number_reflns_obs 3344 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 30.0 _refine.ls_d_res_high 2.8 _refine.ls_percent_reflns_obs 91.1000 _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.201 _refine.ls_R_factor_R_free 0.227 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 9.0000 _refine.ls_number_reflns_R_free 330 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 43.0193 _refine.solvent_model_param_bsol 34.3561 _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] -1.6160 _refine.aniso_B[2][2] 15.8620 _refine.aniso_B[3][3] -14.2460 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.B_iso_max 103.490 _refine.B_iso_min 9.550 _refine.pdbx_overall_phase_error ? _refine.occupancy_max 1.000 _refine.occupancy_min 1.000 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_stereochemistry_target_values ? _refine.solvent_model_details ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.details ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 940 _refine_hist.pdbx_number_atoms_ligand 62 _refine_hist.number_atoms_solvent 36 _refine_hist.number_atoms_total 1038 _refine_hist.d_res_high 2.8 _refine_hist.d_res_low 30.0 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' c_bond_d ? 0.005 ? ? ? 'X-RAY DIFFRACTION' c_angle_d ? 0.969 ? ? ? 'X-RAY DIFFRACTION' c_mcbond_it ? 0.000 1.500 ? ? 'X-RAY DIFFRACTION' c_scbond_it ? 2.467 2.000 ? ? 'X-RAY DIFFRACTION' c_mcangle_it ? 0.000 2.000 ? ? 'X-RAY DIFFRACTION' c_scangle_it ? 3.659 2.500 ? ? # loop_ _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.percent_reflns_obs _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_R_work _refine_ls_shell.R_factor_R_free _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.pdbx_refine_id _refine_ls_shell.redundancy_reflns_obs 2.8000 2.9000 10 93.7000 301 . 0.3827 0.3356 . 26 . 327 . 'X-RAY DIFFRACTION' . 2.9000 3.0200 10 92.2000 295 . 0.3258 0.4144 . 34 . 329 . 'X-RAY DIFFRACTION' . 3.0200 3.1500 10 92.2000 286 . 0.2840 0.2856 . 44 . 330 . 'X-RAY DIFFRACTION' . 3.1500 3.3200 10 87.5000 283 . 0.2576 0.2458 . 31 . 314 . 'X-RAY DIFFRACTION' . 3.3200 3.5300 10 88.2000 281 . 0.2398 0.3498 . 33 . 314 . 'X-RAY DIFFRACTION' . 3.5300 3.8000 10 88.3000 283 . 0.1807 0.1909 . 41 . 324 . 'X-RAY DIFFRACTION' . 3.8000 4.1800 10 87.4000 283 . 0.1985 0.2155 . 36 . 319 . 'X-RAY DIFFRACTION' . 4.1800 4.7800 10 89.3000 303 . 0.1498 0.1743 . 30 . 333 . 'X-RAY DIFFRACTION' . 4.7800 6.0200 10 95.2000 337 . 0.1308 0.1150 . 21 . 358 . 'X-RAY DIFFRACTION' . 6.0200 30.0000 10 96.4000 362 . 0.1680 0.1910 . 34 . 396 . 'X-RAY DIFFRACTION' . # loop_ _pdbx_xplor_file.pdbx_refine_id _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file 'X-RAY DIFFRACTION' 1 dna-rna_free.param ? 'X-RAY DIFFRACTION' 2 water_rep.param ? 'X-RAY DIFFRACTION' 3 ion.param ? 'X-RAY DIFFRACTION' 4 115_xplor.param ? # _database_PDB_matrix.entry_id 4GPY _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 4GPY _struct.title ;Crystal structure of the bacterial ribosomal decoding site in complex with 6'-hydroxysisomicin ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4GPY _struct_keywords.pdbx_keywords RNA/ANTIBIOTIC _struct_keywords.text 'ribosome, aminoglycoside, RNA-ANTIBIOTIC complex, antiprotozoal activity, antibacterial activity' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 3 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 4GPY _struct_ref.pdbx_db_accession 4GPY _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4GPY A 1 ? 23 ? 4GPY 1 ? 23 ? 1 23 2 1 4GPY B 1 ? 23 ? 4GPY 24 ? 46 ? 24 46 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2530 ? 1 MORE -14 ? 1 'SSA (A^2)' 8660 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A G 3 N1 ? ? ? 1_555 B C 23 N3 ? ? A G 3 B C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 3 N2 ? ? ? 1_555 B C 23 O2 ? ? A G 3 B C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 3 O6 ? ? ? 1_555 B C 23 N4 ? ? A G 3 B C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A C 4 N3 ? ? ? 1_555 B G 22 N1 ? ? A C 4 B G 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A C 4 N4 ? ? ? 1_555 B G 22 O6 ? ? A C 4 B G 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 4 O2 ? ? ? 1_555 B G 22 N2 ? ? A C 4 B G 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A G 5 N1 ? ? ? 1_555 B C 21 N3 ? ? A G 5 B C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 5 N2 ? ? ? 1_555 B C 21 O2 ? ? A G 5 B C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 5 O6 ? ? ? 1_555 B C 21 N4 ? ? A G 5 B C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A U 6 O4 ? ? ? 1_555 B U 20 N3 ? ? A U 6 B U 43 1_555 ? ? ? ? ? ? 'U-U MISPAIR' ? ? ? hydrog11 hydrog ? ? A U 6 N3 ? ? ? 1_555 B C 21 O2 ? ? A U 6 B C 44 1_555 ? ? ? ? ? ? 'U-C MISPAIR' ? ? ? hydrog12 hydrog ? ? A C 7 N3 ? ? ? 1_555 B G 19 N1 ? ? A C 7 B G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A C 7 N4 ? ? ? 1_555 B G 19 O6 ? ? A C 7 B G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A C 7 O2 ? ? ? 1_555 B G 19 N2 ? ? A C 7 B G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A C 9 N3 ? ? ? 1_555 B G 16 N1 ? ? A C 9 B G 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A C 9 N4 ? ? ? 1_555 B G 16 O6 ? ? A C 9 B G 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A C 9 O2 ? ? ? 1_555 B G 16 N2 ? ? A C 9 B G 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A G 10 N1 ? ? ? 1_555 B C 15 N3 ? ? A G 10 B C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A G 10 N2 ? ? ? 1_555 B C 15 O2 ? ? A G 10 B C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A G 10 O6 ? ? ? 1_555 B C 15 N4 ? ? A G 10 B C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A C 11 N3 ? ? ? 1_555 B G 14 N1 ? ? A C 11 B G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A C 11 N4 ? ? ? 1_555 B G 14 O6 ? ? A C 11 B G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A C 11 O2 ? ? ? 1_555 B G 14 N2 ? ? A C 11 B G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A C 12 N3 ? ? ? 1_555 B G 13 N1 ? ? A C 12 B G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A C 12 N4 ? ? ? 1_555 B G 13 O6 ? ? A C 12 B G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A C 12 O2 ? ? ? 1_555 B G 13 N2 ? ? A C 12 B G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A G 13 N1 ? ? ? 1_555 B C 12 N3 ? ? A G 13 B C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A G 13 N2 ? ? ? 1_555 B C 12 O2 ? ? A G 13 B C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A G 13 O6 ? ? ? 1_555 B C 12 N4 ? ? A G 13 B C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A G 14 N1 ? ? ? 1_555 B C 11 N3 ? ? A G 14 B C 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A G 14 N2 ? ? ? 1_555 B C 11 O2 ? ? A G 14 B C 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A G 14 O6 ? ? ? 1_555 B C 11 N4 ? ? A G 14 B C 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A C 15 N3 ? ? ? 1_555 B G 10 N1 ? ? A C 15 B G 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A C 15 N4 ? ? ? 1_555 B G 10 O6 ? ? A C 15 B G 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A C 15 O2 ? ? ? 1_555 B G 10 N2 ? ? A C 15 B G 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A G 16 N1 ? ? ? 1_555 B C 9 N3 ? ? A G 16 B C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A G 16 N2 ? ? ? 1_555 B C 9 O2 ? ? A G 16 B C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A G 16 O6 ? ? ? 1_555 B C 9 N4 ? ? A G 16 B C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A G 19 N1 ? ? ? 1_555 B C 7 N3 ? ? A G 19 B C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A G 19 N2 ? ? ? 1_555 B C 7 O2 ? ? A G 19 B C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A G 19 O6 ? ? ? 1_555 B C 7 N4 ? ? A G 19 B C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A U 20 N3 ? ? ? 1_555 B U 6 O4 ? ? A U 20 B U 29 1_555 ? ? ? ? ? ? 'U-U MISPAIR' ? ? ? hydrog43 hydrog ? ? A C 21 N3 ? ? ? 1_555 B G 5 N1 ? ? A C 21 B G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A C 21 N4 ? ? ? 1_555 B G 5 O6 ? ? A C 21 B G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A C 21 O2 ? ? ? 1_555 B G 5 N2 ? ? A C 21 B G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A G 22 N1 ? ? ? 1_555 B C 4 N3 ? ? A G 22 B C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A G 22 N2 ? ? ? 1_555 B C 4 O2 ? ? A G 22 B C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A G 22 O6 ? ? ? 1_555 B C 4 N4 ? ? A G 22 B C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A C 23 N3 ? ? ? 1_555 B G 3 N1 ? ? A C 23 B G 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A C 23 N4 ? ? ? 1_555 B G 3 O6 ? ? A C 23 B G 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A C 23 O2 ? ? ? 1_555 B G 3 N2 ? ? A C 23 B G 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A 6HS 101 ? 9 'BINDING SITE FOR RESIDUE 6HS A 101' AC2 Software A 6HS 102 ? 14 'BINDING SITE FOR RESIDUE 6HS A 102' 1 ? ? ? ? ? ? ? # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 9 G A 16 ? G A 16 . ? 1_555 ? 2 AC1 9 A A 18 ? A A 18 . ? 1_555 ? 3 AC1 9 G A 19 ? G A 19 . ? 1_555 ? 4 AC1 9 U A 20 ? U A 20 . ? 1_555 ? 5 AC1 9 C B 4 ? C B 27 . ? 1_555 ? 6 AC1 9 G B 5 ? G B 28 . ? 1_555 ? 7 AC1 9 U B 6 ? U B 29 . ? 1_555 ? 8 AC1 9 C B 7 ? C B 30 . ? 1_555 ? 9 AC1 9 A B 8 ? A B 31 . ? 1_555 ? 10 AC2 14 C A 4 ? C A 4 . ? 1_555 ? 11 AC2 14 G A 5 ? G A 5 . ? 1_555 ? 12 AC2 14 U A 6 ? U A 6 . ? 1_555 ? 13 AC2 14 C A 7 ? C A 7 . ? 1_555 ? 14 AC2 14 A A 8 ? A A 8 . ? 1_555 ? 15 AC2 14 HOH E . ? HOH A 201 . ? 1_555 ? 16 AC2 14 HOH E . ? HOH A 205 . ? 1_555 ? 17 AC2 14 G B 16 ? G B 39 . ? 1_555 ? 18 AC2 14 A B 18 ? A B 41 . ? 1_555 ? 19 AC2 14 G B 19 ? G B 42 . ? 1_555 ? 20 AC2 14 U B 20 ? U B 43 . ? 1_555 ? 21 AC2 14 HOH F . ? HOH B 201 . ? 1_555 ? 22 AC2 14 HOH F . ? HOH B 202 . ? 1_555 ? 23 AC2 14 HOH F . ? HOH B 205 . ? 1_555 ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O2 _pdbx_validate_close_contact.auth_asym_id_1 B _pdbx_validate_close_contact.auth_comp_id_1 U _pdbx_validate_close_contact.auth_seq_id_1 29 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 B _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 219 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.13 # _struct_site_keywords.site_id 1 _struct_site_keywords.text 'MAJOR GROOVE BINDER' # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id B _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 216 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id F _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A U 1 ? A U 1 2 1 Y 1 B U 24 ? B U 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 6HS C11 C N S 1 6HS C12 C N R 2 6HS C13 C N R 3 6HS C21 C N R 4 6HS C22 C N N 5 6HS C23 C N R 6 6HS C31 C N N 7 6HS C32 C N S 8 6HS C33 C N R 9 6HS C41 C N N 10 6HS C42 C N R 11 6HS C43 C N R 12 6HS C51 C N N 13 6HS C52 C N S 14 6HS C53 C N N 15 6HS C61 C N N 16 6HS C62 C N S 17 6HS C83 C N N 18 6HS C93 C N N 19 6HS N12 N N N 20 6HS N21 N N N 21 6HS N32 N N N 22 6HS N33 N N N 23 6HS O61 O N N 24 6HS O11 O N N 25 6HS O23 O N N 26 6HS O43 O N N 27 6HS O51 O N N 28 6HS O52 O N N 29 6HS O53 O N N 30 6HS O62 O N N 31 6HS H1 H N N 32 6HS H2 H N N 33 6HS H3 H N N 34 6HS H4 H N N 35 6HS H5 H N N 36 6HS H6 H N N 37 6HS H7 H N N 38 6HS H8 H N N 39 6HS H9 H N N 40 6HS H10 H N N 41 6HS H11 H N N 42 6HS H12 H N N 43 6HS H13 H N N 44 6HS H14 H N N 45 6HS H15 H N N 46 6HS H16 H N N 47 6HS H17 H N N 48 6HS H18 H N N 49 6HS H19 H N N 50 6HS H20 H N N 51 6HS H21 H N N 52 6HS H22 H N N 53 6HS H23 H N N 54 6HS H24 H N N 55 6HS H25 H N N 56 6HS H26 H N N 57 6HS H27 H N N 58 6HS H29 H N N 59 6HS H30 H N N 60 6HS H32 H N N 61 6HS H33 H N N 62 6HS H35 H N N 63 6HS H37 H N N 64 6HS H38 H N N 65 6HS H39 H N N 66 6HS H40 H N N 67 A OP3 O N N 68 A P P N N 69 A OP1 O N N 70 A OP2 O N N 71 A "O5'" O N N 72 A "C5'" C N N 73 A "C4'" C N R 74 A "O4'" O N N 75 A "C3'" C N S 76 A "O3'" O N N 77 A "C2'" C N R 78 A "O2'" O N N 79 A "C1'" C N R 80 A N9 N Y N 81 A C8 C Y N 82 A N7 N Y N 83 A C5 C Y N 84 A C6 C Y N 85 A N6 N N N 86 A N1 N Y N 87 A C2 C Y N 88 A N3 N Y N 89 A C4 C Y N 90 A HOP3 H N N 91 A HOP2 H N N 92 A "H5'" H N N 93 A "H5''" H N N 94 A "H4'" H N N 95 A "H3'" H N N 96 A "HO3'" H N N 97 A "H2'" H N N 98 A "HO2'" H N N 99 A "H1'" H N N 100 A H8 H N N 101 A H61 H N N 102 A H62 H N N 103 A H2 H N N 104 C OP3 O N N 105 C P P N N 106 C OP1 O N N 107 C OP2 O N N 108 C "O5'" O N N 109 C "C5'" C N N 110 C "C4'" C N R 111 C "O4'" O N N 112 C "C3'" C N S 113 C "O3'" O N N 114 C "C2'" C N R 115 C "O2'" O N N 116 C "C1'" C N R 117 C N1 N N N 118 C C2 C N N 119 C O2 O N N 120 C N3 N N N 121 C C4 C N N 122 C N4 N N N 123 C C5 C N N 124 C C6 C N N 125 C HOP3 H N N 126 C HOP2 H N N 127 C "H5'" H N N 128 C "H5''" H N N 129 C "H4'" H N N 130 C "H3'" H N N 131 C "HO3'" H N N 132 C "H2'" H N N 133 C "HO2'" H N N 134 C "H1'" H N N 135 C H41 H N N 136 C H42 H N N 137 C H5 H N N 138 C H6 H N N 139 G OP3 O N N 140 G P P N N 141 G OP1 O N N 142 G OP2 O N N 143 G "O5'" O N N 144 G "C5'" C N N 145 G "C4'" C N R 146 G "O4'" O N N 147 G "C3'" C N S 148 G "O3'" O N N 149 G "C2'" C N R 150 G "O2'" O N N 151 G "C1'" C N R 152 G N9 N Y N 153 G C8 C Y N 154 G N7 N Y N 155 G C5 C Y N 156 G C6 C N N 157 G O6 O N N 158 G N1 N N N 159 G C2 C N N 160 G N2 N N N 161 G N3 N N N 162 G C4 C Y N 163 G HOP3 H N N 164 G HOP2 H N N 165 G "H5'" H N N 166 G "H5''" H N N 167 G "H4'" H N N 168 G "H3'" H N N 169 G "HO3'" H N N 170 G "H2'" H N N 171 G "HO2'" H N N 172 G "H1'" H N N 173 G H8 H N N 174 G H1 H N N 175 G H21 H N N 176 G H22 H N N 177 HOH O O N N 178 HOH H1 H N N 179 HOH H2 H N N 180 U OP3 O N N 181 U P P N N 182 U OP1 O N N 183 U OP2 O N N 184 U "O5'" O N N 185 U "C5'" C N N 186 U "C4'" C N R 187 U "O4'" O N N 188 U "C3'" C N S 189 U "O3'" O N N 190 U "C2'" C N R 191 U "O2'" O N N 192 U "C1'" C N R 193 U N1 N N N 194 U C2 C N N 195 U O2 O N N 196 U N3 N N N 197 U C4 C N N 198 U O4 O N N 199 U C5 C N N 200 U C6 C N N 201 U HOP3 H N N 202 U HOP2 H N N 203 U "H5'" H N N 204 U "H5''" H N N 205 U "H4'" H N N 206 U "H3'" H N N 207 U "HO3'" H N N 208 U "H2'" H N N 209 U "HO2'" H N N 210 U "H1'" H N N 211 U H3 H N N 212 U H5 H N N 213 U H6 H N N 214 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 6HS N21 C21 sing N N 1 6HS C21 C31 sing N N 2 6HS C21 C11 sing N N 3 6HS C31 C41 sing N N 4 6HS C83 C43 sing N N 5 6HS C11 O51 sing N N 6 6HS C11 O11 sing N N 7 6HS C41 C51 doub N N 8 6HS O51 C51 sing N N 9 6HS C53 C43 sing N N 10 6HS C53 O53 sing N N 11 6HS C51 C61 sing N N 12 6HS O52 C52 sing N N 13 6HS O43 C43 sing N N 14 6HS C43 C33 sing N N 15 6HS C61 O61 sing N N 16 6HS O11 C42 sing N N 17 6HS O53 C13 sing N N 18 6HS C52 C42 sing N N 19 6HS C52 C62 sing N N 20 6HS C42 C32 sing N N 21 6HS C33 N33 sing N N 22 6HS C33 C23 sing N N 23 6HS C13 O62 sing N N 24 6HS C13 C23 sing N N 25 6HS N33 C93 sing N N 26 6HS O62 C62 sing N N 27 6HS C62 C12 sing N N 28 6HS C23 O23 sing N N 29 6HS C32 N32 sing N N 30 6HS C32 C22 sing N N 31 6HS C12 C22 sing N N 32 6HS C12 N12 sing N N 33 6HS C11 H1 sing N N 34 6HS C12 H2 sing N N 35 6HS C13 H3 sing N N 36 6HS C21 H4 sing N N 37 6HS C22 H5 sing N N 38 6HS C22 H6 sing N N 39 6HS C23 H7 sing N N 40 6HS C31 H8 sing N N 41 6HS C31 H9 sing N N 42 6HS C32 H10 sing N N 43 6HS C33 H11 sing N N 44 6HS C41 H12 sing N N 45 6HS C42 H13 sing N N 46 6HS C52 H14 sing N N 47 6HS C53 H15 sing N N 48 6HS C53 H16 sing N N 49 6HS C61 H17 sing N N 50 6HS C61 H18 sing N N 51 6HS C62 H19 sing N N 52 6HS C83 H20 sing N N 53 6HS C83 H21 sing N N 54 6HS C83 H22 sing N N 55 6HS C93 H23 sing N N 56 6HS C93 H24 sing N N 57 6HS C93 H25 sing N N 58 6HS N12 H26 sing N N 59 6HS N12 H27 sing N N 60 6HS N21 H29 sing N N 61 6HS N21 H30 sing N N 62 6HS N32 H32 sing N N 63 6HS N32 H33 sing N N 64 6HS N33 H35 sing N N 65 6HS O61 H37 sing N N 66 6HS O23 H38 sing N N 67 6HS O43 H39 sing N N 68 6HS O52 H40 sing N N 69 A OP3 P sing N N 70 A OP3 HOP3 sing N N 71 A P OP1 doub N N 72 A P OP2 sing N N 73 A P "O5'" sing N N 74 A OP2 HOP2 sing N N 75 A "O5'" "C5'" sing N N 76 A "C5'" "C4'" sing N N 77 A "C5'" "H5'" sing N N 78 A "C5'" "H5''" sing N N 79 A "C4'" "O4'" sing N N 80 A "C4'" "C3'" sing N N 81 A "C4'" "H4'" sing N N 82 A "O4'" "C1'" sing N N 83 A "C3'" "O3'" sing N N 84 A "C3'" "C2'" sing N N 85 A "C3'" "H3'" sing N N 86 A "O3'" "HO3'" sing N N 87 A "C2'" "O2'" sing N N 88 A "C2'" "C1'" sing N N 89 A "C2'" "H2'" sing N N 90 A "O2'" "HO2'" sing N N 91 A "C1'" N9 sing N N 92 A "C1'" "H1'" sing N N 93 A N9 C8 sing Y N 94 A N9 C4 sing Y N 95 A C8 N7 doub Y N 96 A C8 H8 sing N N 97 A N7 C5 sing Y N 98 A C5 C6 sing Y N 99 A C5 C4 doub Y N 100 A C6 N6 sing N N 101 A C6 N1 doub Y N 102 A N6 H61 sing N N 103 A N6 H62 sing N N 104 A N1 C2 sing Y N 105 A C2 N3 doub Y N 106 A C2 H2 sing N N 107 A N3 C4 sing Y N 108 C OP3 P sing N N 109 C OP3 HOP3 sing N N 110 C P OP1 doub N N 111 C P OP2 sing N N 112 C P "O5'" sing N N 113 C OP2 HOP2 sing N N 114 C "O5'" "C5'" sing N N 115 C "C5'" "C4'" sing N N 116 C "C5'" "H5'" sing N N 117 C "C5'" "H5''" sing N N 118 C "C4'" "O4'" sing N N 119 C "C4'" "C3'" sing N N 120 C "C4'" "H4'" sing N N 121 C "O4'" "C1'" sing N N 122 C "C3'" "O3'" sing N N 123 C "C3'" "C2'" sing N N 124 C "C3'" "H3'" sing N N 125 C "O3'" "HO3'" sing N N 126 C "C2'" "O2'" sing N N 127 C "C2'" "C1'" sing N N 128 C "C2'" "H2'" sing N N 129 C "O2'" "HO2'" sing N N 130 C "C1'" N1 sing N N 131 C "C1'" "H1'" sing N N 132 C N1 C2 sing N N 133 C N1 C6 sing N N 134 C C2 O2 doub N N 135 C C2 N3 sing N N 136 C N3 C4 doub N N 137 C C4 N4 sing N N 138 C C4 C5 sing N N 139 C N4 H41 sing N N 140 C N4 H42 sing N N 141 C C5 C6 doub N N 142 C C5 H5 sing N N 143 C C6 H6 sing N N 144 G OP3 P sing N N 145 G OP3 HOP3 sing N N 146 G P OP1 doub N N 147 G P OP2 sing N N 148 G P "O5'" sing N N 149 G OP2 HOP2 sing N N 150 G "O5'" "C5'" sing N N 151 G "C5'" "C4'" sing N N 152 G "C5'" "H5'" sing N N 153 G "C5'" "H5''" sing N N 154 G "C4'" "O4'" sing N N 155 G "C4'" "C3'" sing N N 156 G "C4'" "H4'" sing N N 157 G "O4'" "C1'" sing N N 158 G "C3'" "O3'" sing N N 159 G "C3'" "C2'" sing N N 160 G "C3'" "H3'" sing N N 161 G "O3'" "HO3'" sing N N 162 G "C2'" "O2'" sing N N 163 G "C2'" "C1'" sing N N 164 G "C2'" "H2'" sing N N 165 G "O2'" "HO2'" sing N N 166 G "C1'" N9 sing N N 167 G "C1'" "H1'" sing N N 168 G N9 C8 sing Y N 169 G N9 C4 sing Y N 170 G C8 N7 doub Y N 171 G C8 H8 sing N N 172 G N7 C5 sing Y N 173 G C5 C6 sing N N 174 G C5 C4 doub Y N 175 G C6 O6 doub N N 176 G C6 N1 sing N N 177 G N1 C2 sing N N 178 G N1 H1 sing N N 179 G C2 N2 sing N N 180 G C2 N3 doub N N 181 G N2 H21 sing N N 182 G N2 H22 sing N N 183 G N3 C4 sing N N 184 HOH O H1 sing N N 185 HOH O H2 sing N N 186 U OP3 P sing N N 187 U OP3 HOP3 sing N N 188 U P OP1 doub N N 189 U P OP2 sing N N 190 U P "O5'" sing N N 191 U OP2 HOP2 sing N N 192 U "O5'" "C5'" sing N N 193 U "C5'" "C4'" sing N N 194 U "C5'" "H5'" sing N N 195 U "C5'" "H5''" sing N N 196 U "C4'" "O4'" sing N N 197 U "C4'" "C3'" sing N N 198 U "C4'" "H4'" sing N N 199 U "O4'" "C1'" sing N N 200 U "C3'" "O3'" sing N N 201 U "C3'" "C2'" sing N N 202 U "C3'" "H3'" sing N N 203 U "O3'" "HO3'" sing N N 204 U "C2'" "O2'" sing N N 205 U "C2'" "C1'" sing N N 206 U "C2'" "H2'" sing N N 207 U "O2'" "HO2'" sing N N 208 U "C1'" N1 sing N N 209 U "C1'" "H1'" sing N N 210 U N1 C2 sing N N 211 U N1 C6 sing N N 212 U C2 O2 doub N N 213 U C2 N3 sing N N 214 U N3 C4 sing N N 215 U N3 H3 sing N N 216 U C4 O4 doub N N 217 U C4 C5 sing N N 218 U C5 C6 doub N N 219 U C5 H5 sing N N 220 U C6 H6 sing N N 221 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 4GPY 'double helix' 4GPY 'a-form double helix' 4GPY 'mismatched base pair' 4GPY 'internal loop' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 3 1_555 B C 23 1_555 -0.175 0.076 -0.207 -8.616 -2.882 -1.600 1 A_G3:C46_B A 3 ? B 46 ? 19 1 1 A C 4 1_555 B G 22 1_555 0.222 -0.141 -0.224 11.056 -8.403 -1.982 2 A_C4:G45_B A 4 ? B 45 ? 19 1 1 A G 5 1_555 B C 21 1_555 -0.128 -0.295 -0.536 -4.276 -13.352 2.410 3 A_G5:C44_B A 5 ? B 44 ? 19 1 1 A U 6 1_555 B U 20 1_555 -2.252 -1.489 -0.299 15.637 -3.536 -4.354 4 A_U6:U43_B A 6 ? B 43 ? ? ? 1 A C 7 1_555 B G 19 1_555 0.174 -0.289 -0.146 -1.906 -0.096 1.845 5 A_C7:G42_B A 7 ? B 42 ? 19 1 1 A C 9 1_555 B G 16 1_555 0.218 -0.068 -0.415 18.044 -20.502 3.195 6 A_C9:G39_B A 9 ? B 39 ? 19 1 1 A G 10 1_555 B C 15 1_555 0.161 -0.207 -0.010 -2.333 -26.495 3.435 7 A_G10:C38_B A 10 ? B 38 ? 19 1 1 A C 11 1_555 B G 14 1_555 -0.085 -0.040 0.359 -2.949 -14.166 0.663 8 A_C11:G37_B A 11 ? B 37 ? 19 1 1 A C 12 1_555 B G 13 1_555 0.930 -0.226 0.282 -0.943 -5.133 2.384 9 A_C12:G36_B A 12 ? B 36 ? 19 1 1 A G 13 1_555 B C 12 1_555 -0.063 -0.158 0.032 -2.318 -11.046 5.175 10 A_G13:C35_B A 13 ? B 35 ? 19 1 1 A G 14 1_555 B C 11 1_555 0.106 -0.288 0.137 2.158 -12.408 1.425 11 A_G14:C34_B A 14 ? B 34 ? 19 1 1 A C 15 1_555 B G 10 1_555 0.581 -0.040 0.364 0.646 -16.217 8.274 12 A_C15:G33_B A 15 ? B 33 ? 19 1 1 A G 16 1_555 B C 9 1_555 0.275 -0.016 -0.117 -12.816 -21.008 4.104 13 A_G16:C32_B A 16 ? B 32 ? 19 1 1 A G 19 1_555 B C 7 1_555 0.196 -0.140 -0.162 2.249 13.539 -0.685 14 A_G19:C30_B A 19 ? B 30 ? 19 1 1 A U 20 1_555 B U 6 1_555 1.825 -1.499 -0.546 4.759 -10.726 -6.471 15 A_U20:U29_B A 20 ? B 29 ? ? ? 1 A C 21 1_555 B G 5 1_555 0.763 -0.444 0.127 3.988 -9.709 2.740 16 A_C21:G28_B A 21 ? B 28 ? 19 1 1 A G 22 1_555 B C 4 1_555 -0.463 -0.505 -0.149 -2.474 -10.379 -3.536 17 A_G22:C27_B A 22 ? B 27 ? 19 1 1 A C 23 1_555 B G 3 1_555 0.784 -0.453 0.219 2.254 -2.288 -6.449 18 A_C23:G26_B A 23 ? B 26 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 3 1_555 B C 23 1_555 A C 4 1_555 B G 22 1_555 -0.566 -1.091 2.924 -2.305 -0.364 33.292 -1.846 0.642 2.967 -0.634 4.018 33.371 1 AA_G3C4:G45C46_BB A 3 ? B 46 ? A 4 ? B 45 ? 1 A C 4 1_555 B G 22 1_555 A G 5 1_555 B C 21 1_555 0.672 -1.844 3.696 1.249 11.239 30.475 -5.349 -0.974 2.877 20.515 -2.279 32.459 2 AA_C4G5:C44G45_BB A 4 ? B 45 ? A 5 ? B 44 ? 1 A G 5 1_555 B C 21 1_555 A U 6 1_555 B U 20 1_555 -0.431 -1.860 2.637 -3.922 -1.367 23.945 -4.060 -0.005 2.771 -3.264 9.363 24.298 3 AA_G5U6:U43C44_BB A 5 ? B 44 ? A 6 ? B 43 ? 1 A U 6 1_555 B U 20 1_555 A C 7 1_555 B G 19 1_555 1.019 -2.278 3.874 -1.398 5.911 40.961 -3.938 -1.611 3.491 8.391 1.984 41.390 4 AA_U6C7:G42U43_BB A 6 ? B 43 ? A 7 ? B 42 ? 1 A C 7 1_555 B G 19 1_555 A C 9 1_555 B G 16 1_555 0.473 -3.215 6.430 -9.589 9.658 74.646 -3.173 -0.935 5.952 7.901 7.845 75.698 5 AA_C7C9:G39G42_BB A 7 ? B 42 ? A 9 ? B 39 ? 1 A C 9 1_555 B G 16 1_555 A G 10 1_555 B C 15 1_555 -0.383 -1.581 3.669 -5.859 19.247 32.028 -4.971 -0.175 2.406 31.323 9.535 37.682 6 AA_C9G10:C38G39_BB A 9 ? B 39 ? A 10 ? B 38 ? 1 A G 10 1_555 B C 15 1_555 A C 11 1_555 B G 14 1_555 -0.486 -1.191 3.173 -5.545 3.938 33.708 -2.608 -0.011 3.058 6.706 9.442 34.368 7 AA_G10C11:G37C38_BB A 10 ? B 38 ? A 11 ? B 37 ? 1 A C 11 1_555 B G 14 1_555 A C 12 1_555 B G 13 1_555 0.052 -1.644 3.171 -0.154 0.348 36.233 -2.690 -0.105 3.155 0.560 0.248 36.235 8 AA_C11C12:G36G37_BB A 11 ? B 37 ? A 12 ? B 36 ? 1 A C 12 1_555 B G 13 1_555 A G 13 1_555 B C 12 1_555 -0.192 -1.938 3.195 2.426 5.684 24.438 -5.955 1.085 2.651 13.161 -5.617 25.195 9 AA_C12G13:C35G36_BB A 12 ? B 36 ? A 13 ? B 35 ? 1 A G 13 1_555 B C 12 1_555 A G 14 1_555 B C 11 1_555 -0.252 -1.501 3.048 -1.646 6.136 33.939 -3.381 0.197 2.752 10.399 2.790 34.511 10 AA_G13G14:C34C35_BB A 13 ? B 35 ? A 14 ? B 34 ? 1 A G 14 1_555 B C 11 1_555 A C 15 1_555 B G 10 1_555 0.615 -1.273 3.226 0.530 5.331 34.564 -2.889 -0.947 3.011 8.905 -0.886 34.965 11 AA_G14C15:G33C34_BB A 14 ? B 34 ? A 15 ? B 33 ? 1 A C 15 1_555 B G 10 1_555 A G 16 1_555 B C 9 1_555 0.012 -1.497 3.469 4.583 11.625 33.413 -4.120 0.639 2.788 19.397 -7.647 35.611 12 AA_C15G16:C32G33_BB A 15 ? B 33 ? A 16 ? B 32 ? 1 A G 16 1_555 B C 9 1_555 A G 19 1_555 B C 7 1_555 -1.206 -3.588 6.270 11.692 16.250 72.889 -3.831 1.629 5.275 13.432 -9.665 75.219 13 AA_G16G19:C30C32_BB A 16 ? B 32 ? A 19 ? B 30 ? 1 A G 19 1_555 B C 7 1_555 A U 20 1_555 B U 6 1_555 -0.929 -2.358 3.438 4.692 0.028 39.221 -3.494 1.947 3.308 0.042 -6.959 39.490 14 AA_G19U20:U29C30_BB A 19 ? B 30 ? A 20 ? B 29 ? 1 A U 20 1_555 B U 6 1_555 A C 21 1_555 B G 5 1_555 0.603 -1.799 3.226 -1.825 4.676 30.534 -4.223 -1.462 2.885 8.805 3.437 30.935 15 AA_U20C21:G28U29_BB A 20 ? B 29 ? A 21 ? B 28 ? 1 A C 21 1_555 B G 5 1_555 A G 22 1_555 B C 4 1_555 -0.644 -2.037 3.384 2.198 6.752 23.658 -6.703 2.139 2.640 16.013 -5.213 24.686 16 AA_C21G22:C27G28_BB A 21 ? B 28 ? A 22 ? B 27 ? 1 A G 22 1_555 B C 4 1_555 A C 23 1_555 B G 3 1_555 0.483 -1.587 3.243 -0.508 0.253 40.796 -2.304 -0.748 3.227 0.363 0.729 40.800 17 AA_G22C23:G26C27_BB A 22 ? B 27 ? A 23 ? B 26 ? # _atom_sites.entry_id 4GPY _atom_sites.fract_transf_matrix[1][1] 0.029637 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011804 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.020934 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P # loop_