HEADER PROTEIN TRANSPORT 27-AUG-12 4GSJ TITLE CRYSTAL STRUCTURE OF ATG7 NTD K14A F16A D18A MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUITIN-LIKE MODIFIER-ACTIVATING ENZYME ATG7; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL DOMAIN (UNP RESIDUES 1-289); COMPND 5 SYNONYM: ATG12-ACTIVATING ENZYME E1 ATG7, AUTOPHAGY-RELATED PROTEIN COMPND 6 7, CYTOPLASM TO VACUOLE TARGETING PROTEIN 2; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: YEAST; SOURCE 4 ORGANISM_TAXID: 559292; SOURCE 5 STRAIN: ATCC 204508 / S288C; SOURCE 6 GENE: APG7, ATG7, CVT2, YHR171W; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) GOLD; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PGEX-4T1 KEYWDS UBIQUITIN-LIKE PROTEIN ACTIVATION ENZYME, PROTEIN TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR S.E.KAISER,K.MAO,A.M.TAHERBHOY,S.YU,J.L.OLSZEWSKI,D.M.DUDA,I.KURINOV, AUTHOR 2 A.DENG,T.D.FENN,D.J.KLIONSKY,B.A.SCHULMAN REVDAT 5 13-SEP-23 4GSJ 1 REMARK SEQADV REVDAT 4 15-NOV-17 4GSJ 1 REMARK REVDAT 3 19-DEC-12 4GSJ 1 JRNL REVDAT 2 28-NOV-12 4GSJ 1 JRNL REVDAT 1 14-NOV-12 4GSJ 0 JRNL AUTH S.E.KAISER,K.MAO,A.M.TAHERBHOY,S.YU,J.L.OLSZEWSKI,D.M.DUDA, JRNL AUTH 2 I.KURINOV,A.DENG,T.D.FENN,D.J.KLIONSKY,B.A.SCHULMAN JRNL TITL NONCANONICAL E2 RECRUITMENT BY THE AUTOPHAGY E1 REVEALED BY JRNL TITL 2 ATG7-ATG3 AND ATG7-ATG10 STRUCTURES. JRNL REF NAT.STRUCT.MOL.BIOL. V. 19 1242 2012 JRNL REFN ISSN 1545-9993 JRNL PMID 23142976 JRNL DOI 10.1038/NSMB.2415 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.7.1_743 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.61 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 3 NUMBER OF REFLECTIONS : 35168 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1757 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.6287 - 3.9847 1.00 2841 178 0.1665 0.1728 REMARK 3 2 3.9847 - 3.1630 1.00 2738 149 0.1605 0.2018 REMARK 3 3 3.1630 - 2.7632 1.00 2708 147 0.1813 0.1953 REMARK 3 4 2.7632 - 2.5106 1.00 2704 142 0.1912 0.2239 REMARK 3 5 2.5106 - 2.3307 1.00 2670 136 0.1785 0.2281 REMARK 3 6 2.3307 - 2.1933 1.00 2682 139 0.1723 0.2139 REMARK 3 7 2.1933 - 2.0834 1.00 2684 125 0.1716 0.2157 REMARK 3 8 2.0834 - 1.9927 1.00 2671 139 0.1761 0.2197 REMARK 3 9 1.9927 - 1.9160 1.00 2656 132 0.1786 0.2651 REMARK 3 10 1.9160 - 1.8499 0.98 2626 127 0.2027 0.2680 REMARK 3 11 1.8499 - 1.7920 0.92 2412 139 0.2032 0.2665 REMARK 3 12 1.7920 - 1.7408 0.84 2213 127 0.2155 0.2654 REMARK 3 13 1.7408 - 1.6950 0.68 1806 77 0.2623 0.3202 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.83 REMARK 3 K_SOL : 0.32 REMARK 3 B_SOL : 34.80 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.400 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.700 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.59 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -8.15230 REMARK 3 B22 (A**2) : 0.04100 REMARK 3 B33 (A**2) : 8.11130 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2418 REMARK 3 ANGLE : 1.005 3278 REMARK 3 CHIRALITY : 0.069 369 REMARK 3 PLANARITY : 0.004 419 REMARK 3 DIHEDRAL : 13.313 899 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID -1:69) REMARK 3 ORIGIN FOR THE GROUP (A): 20.8618 -16.8623 -24.3678 REMARK 3 T TENSOR REMARK 3 T11: 0.2043 T22: 0.1959 REMARK 3 T33: 0.1687 T12: -0.0004 REMARK 3 T13: 0.0035 T23: -0.0449 REMARK 3 L TENSOR REMARK 3 L11: 1.4488 L22: 1.4610 REMARK 3 L33: 1.3210 L12: 0.6126 REMARK 3 L13: -0.6594 L23: -0.3108 REMARK 3 S TENSOR REMARK 3 S11: -0.2123 S12: 0.2511 S13: -0.1259 REMARK 3 S21: -0.4105 S22: 0.1487 S23: -0.0455 REMARK 3 S31: 0.3389 S32: -0.0561 S33: 0.0743 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 70:90) REMARK 3 ORIGIN FOR THE GROUP (A): 18.7038 -12.1169 -28.9972 REMARK 3 T TENSOR REMARK 3 T11: 0.2818 T22: 0.3066 REMARK 3 T33: 0.2855 T12: -0.0594 REMARK 3 T13: -0.0950 T23: 0.0192 REMARK 3 L TENSOR REMARK 3 L11: 2.2897 L22: 2.7136 REMARK 3 L33: 1.3196 L12: 1.4440 REMARK 3 L13: 0.1986 L23: 0.1294 REMARK 3 S TENSOR REMARK 3 S11: -0.0062 S12: 0.6596 S13: -0.3255 REMARK 3 S21: -0.6219 S22: 0.1671 S23: 0.4268 REMARK 3 S31: 0.3226 S32: -0.2675 S33: 0.0726 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 91:124) REMARK 3 ORIGIN FOR THE GROUP (A): 21.3140 -5.1245 -16.2747 REMARK 3 T TENSOR REMARK 3 T11: 0.1563 T22: 0.1413 REMARK 3 T33: 0.1235 T12: -0.0031 REMARK 3 T13: -0.0004 T23: 0.0095 REMARK 3 L TENSOR REMARK 3 L11: 4.2669 L22: 1.9536 REMARK 3 L33: 2.4647 L12: 0.0645 REMARK 3 L13: -0.0904 L23: -0.0701 REMARK 3 S TENSOR REMARK 3 S11: -0.0066 S12: 0.0759 S13: 0.0584 REMARK 3 S21: -0.0404 S22: -0.0006 S23: -0.2285 REMARK 3 S31: -0.0540 S32: 0.2922 S33: -0.0218 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 125:147) REMARK 3 ORIGIN FOR THE GROUP (A): 30.3564 -13.1963 -23.1976 REMARK 3 T TENSOR REMARK 3 T11: 0.1486 T22: 0.1594 REMARK 3 T33: 0.1646 T12: 0.0411 REMARK 3 T13: 0.0306 T23: 0.0150 REMARK 3 L TENSOR REMARK 3 L11: 4.2172 L22: 2.3360 REMARK 3 L33: 5.6468 L12: -0.5419 REMARK 3 L13: -3.2670 L23: 0.6494 REMARK 3 S TENSOR REMARK 3 S11: -0.0865 S12: 0.0316 S13: -0.0511 REMARK 3 S21: -0.2745 S22: 0.0261 S23: -0.3721 REMARK 3 S31: 0.4084 S32: 0.4697 S33: 0.0312 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 148:258) REMARK 3 ORIGIN FOR THE GROUP (A): 4.0489 -16.6341 -7.8156 REMARK 3 T TENSOR REMARK 3 T11: 0.1413 T22: 0.1149 REMARK 3 T33: 0.1444 T12: -0.0094 REMARK 3 T13: 0.0113 T23: 0.0024 REMARK 3 L TENSOR REMARK 3 L11: 2.4422 L22: 1.6614 REMARK 3 L33: 1.4217 L12: 0.1926 REMARK 3 L13: -0.0351 L23: -0.1468 REMARK 3 S TENSOR REMARK 3 S11: -0.0415 S12: 0.0540 S13: -0.1119 REMARK 3 S21: -0.0384 S22: 0.0260 S23: 0.0311 REMARK 3 S31: 0.0507 S32: -0.0763 S33: 0.0061 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 259:289) REMARK 3 ORIGIN FOR THE GROUP (A): 28.0552 -14.7741 -12.8702 REMARK 3 T TENSOR REMARK 3 T11: 0.0575 T22: 0.0323 REMARK 3 T33: 0.1376 T12: 0.0207 REMARK 3 T13: -0.0005 T23: 0.0216 REMARK 3 L TENSOR REMARK 3 L11: 2.6486 L22: 2.9212 REMARK 3 L33: 3.8285 L12: 0.4194 REMARK 3 L13: 0.0627 L23: -0.4366 REMARK 3 S TENSOR REMARK 3 S11: -0.2431 S12: -0.3156 S13: -0.1878 REMARK 3 S21: 0.1599 S22: 0.0943 S23: -0.3405 REMARK 3 S31: 0.3130 S32: 0.3450 S33: 0.0346 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4GSJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-SEP-12. REMARK 100 THE DEPOSITION ID IS D_1000074581. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-MAY-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35213 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.695 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 46.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 77.4 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.31600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3T7F REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 7.2% ISOPROPANOL, 50 MM CITRATE REMARK 280 BUFFER, PH 4.1, 0.1 M POTASSIUM THIOCYANATE, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 28.41300 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.31550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.41300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.31550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 C1 IPA A 307 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 73 REMARK 465 SER A 264 REMARK 465 ASN A 265 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 53 CG CD CE NZ REMARK 470 LYS A 69 CG CD CE NZ REMARK 470 LYS A 132 CG CD CE NZ REMARK 470 LYS A 162 CG CD CE NZ REMARK 470 GLN A 260 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 401 O HOH A 499 2.03 REMARK 500 O HOH A 524 O HOH A 542 2.06 REMARK 500 O HOH A 555 O HOH A 582 2.10 REMARK 500 O HOH A 451 O HOH A 554 2.11 REMARK 500 O HOH A 493 O HOH A 650 2.13 REMARK 500 O HOH A 530 O HOH A 630 2.17 REMARK 500 NZ LYS A 119 O HOH A 608 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O2 IPA A 302 O HOH A 654 4545 1.45 REMARK 500 O HOH A 657 O HOH A 657 2655 1.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 244 -155.81 -83.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CIT A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPA A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPA A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPA A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPA A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPA A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPA A 307 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4GSK RELATED DB: PDB REMARK 900 RELATED ID: 4GSL RELATED DB: PDB DBREF 4GSJ A 1 289 UNP P38862 ATG7_YEAST 1 289 SEQADV 4GSJ GLY A -1 UNP P38862 EXPRESSION TAG SEQADV 4GSJ SER A 0 UNP P38862 EXPRESSION TAG SEQADV 4GSJ ALA A 14 UNP P38862 LYS 14 ENGINEERED MUTATION SEQADV 4GSJ ALA A 16 UNP P38862 PHE 16 ENGINEERED MUTATION SEQADV 4GSJ ALA A 18 UNP P38862 ASP 18 ENGINEERED MUTATION SEQRES 1 A 291 GLY SER MET SER SER GLU ARG VAL LEU SER TYR ALA PRO SEQRES 2 A 291 ALA PHE ALA SER ALA LEU ALA THR SER PHE PHE GLN GLU SEQRES 3 A 291 LEU SER ARG LEU LYS LEU ASP VAL LEU LYS LEU ASP SER SEQRES 4 A 291 THR CYS GLN PRO LEU THR VAL ASN LEU ASP LEU HIS ASN SEQRES 5 A 291 ILE PRO LYS SER ALA ASP GLN VAL PRO LEU PHE LEU THR SEQRES 6 A 291 ASN ARG SER PHE GLU LYS HIS ASN ASN LYS ARG THR ASN SEQRES 7 A 291 GLU VAL PRO LEU GLN GLY SER ILE PHE ASN PHE ASN VAL SEQRES 8 A 291 LEU ASP GLU PHE LYS ASN LEU ASP LYS GLN LEU PHE LEU SEQRES 9 A 291 HIS GLN ARG ALA LEU GLU CYS TRP GLU ASP GLY ILE LYS SEQRES 10 A 291 ASP ILE ASN LYS CYS VAL SER PHE VAL ILE ILE SER PHE SEQRES 11 A 291 ALA ASP LEU LYS LYS TYR ARG PHE TYR TYR TRP LEU GLY SEQRES 12 A 291 VAL PRO CYS PHE GLN ARG PRO SER SER THR VAL LEU HIS SEQRES 13 A 291 VAL ARG PRO GLU PRO SER LEU LYS GLY LEU PHE SER LYS SEQRES 14 A 291 CYS GLN LYS TRP PHE ASP VAL ASN TYR SER LYS TRP VAL SEQRES 15 A 291 CYS ILE LEU ASP ALA ASP ASP GLU ILE VAL ASN TYR ASP SEQRES 16 A 291 LYS CYS ILE ILE ARG LYS THR LYS VAL LEU ALA ILE ARG SEQRES 17 A 291 ASP THR SER THR MET GLU ASN VAL PRO SER ALA LEU THR SEQRES 18 A 291 LYS ASN PHE LEU SER VAL LEU GLN TYR ASP VAL PRO ASP SEQRES 19 A 291 LEU ILE ASP PHE LYS LEU LEU ILE ILE ARG GLN ASN GLU SEQRES 20 A 291 GLY SER PHE ALA LEU ASN ALA THR PHE ALA SER ILE ASP SEQRES 21 A 291 PRO GLN SER SER SER SER ASN PRO ASP MET LYS VAL SER SEQRES 22 A 291 GLY TRP GLU ARG ASN VAL GLN GLY LYS LEU ALA PRO ARG SEQRES 23 A 291 VAL VAL ASP LEU SER HET CIT A 301 13 HET IPA A 302 4 HET IPA A 303 4 HET IPA A 304 4 HET IPA A 305 4 HET IPA A 306 4 HET IPA A 307 4 HETNAM CIT CITRIC ACID HETNAM IPA ISOPROPYL ALCOHOL HETSYN IPA 2-PROPANOL FORMUL 2 CIT C6 H8 O7 FORMUL 3 IPA 6(C3 H8 O) FORMUL 9 HOH *257(H2 O) HELIX 1 1 ALA A 18 LEU A 30 1 13 HELIX 2 2 THR A 63 GLU A 68 5 6 HELIX 3 3 VAL A 89 LEU A 96 1 8 HELIX 4 4 ASP A 97 ILE A 114 1 18 HELIX 5 5 ASP A 116 CYS A 120 5 5 HELIX 6 6 PRO A 159 GLY A 163 5 5 HELIX 7 7 LEU A 164 ASN A 175 1 12 HELIX 8 8 ASP A 193 LYS A 201 1 9 HELIX 9 9 ALA A 217 VAL A 230 1 14 SHEET 1 A 7 ARG A 5 VAL A 6 0 SHEET 2 A 7 THR A 151 PRO A 157 -1 O VAL A 155 N ARG A 5 SHEET 3 A 7 PHE A 248 SER A 256 -1 O ALA A 255 N VAL A 152 SHEET 4 A 7 ASP A 235 ILE A 241 -1 N ILE A 240 O PHE A 248 SHEET 5 A 7 VAL A 202 ARG A 206 1 N LEU A 203 O LEU A 239 SHEET 6 A 7 VAL A 180 LEU A 183 -1 N CYS A 181 O ALA A 204 SHEET 7 A 7 ILE A 189 ASN A 191 -1 O VAL A 190 N ILE A 182 SHEET 1 B 2 PHE A 13 LEU A 17 0 SHEET 2 B 2 VAL A 58 LEU A 62 1 O LEU A 60 N ALA A 14 SHEET 1 C 5 SER A 37 LEU A 46 0 SHEET 2 C 5 VAL A 78 PHE A 87 -1 O VAL A 78 N LEU A 46 SHEET 3 C 5 PHE A 123 ASP A 130 1 O ILE A 125 N PHE A 85 SHEET 4 C 5 ARG A 135 GLN A 146 -1 O TYR A 137 N PHE A 128 SHEET 5 C 5 LYS A 269 TRP A 273 -1 O SER A 271 N CYS A 144 SHEET 1 D 5 SER A 37 LEU A 46 0 SHEET 2 D 5 VAL A 78 PHE A 87 -1 O VAL A 78 N LEU A 46 SHEET 3 D 5 PHE A 123 ASP A 130 1 O ILE A 125 N PHE A 85 SHEET 4 D 5 ARG A 135 GLN A 146 -1 O TYR A 137 N PHE A 128 SHEET 5 D 5 ARG A 284 ASP A 287 -1 O ARG A 284 N TYR A 138 CISPEP 1 ARG A 147 PRO A 148 0 -0.52 SITE 1 AC1 12 GLY A -1 SER A 0 MET A 1 GLU A 4 SITE 2 AC1 12 HIS A 154 ASP A 186 THR A 253 LYS A 280 SITE 3 AC1 12 LEU A 281 HOH A 490 HOH A 495 HOH A 500 SITE 1 AC2 8 MET A 1 VAL A 270 SER A 271 GLY A 272 SITE 2 AC2 8 TRP A 273 HOH A 526 HOH A 593 HOH A 654 SITE 1 AC3 4 LYS A 220 LYS A 237 LYS A 269 SER A 271 SITE 1 AC4 3 LYS A 34 GLN A 40 HOH A 656 SITE 1 AC5 6 ASN A 276 VAL A 277 GLN A 278 ARG A 284 SITE 2 AC5 6 VAL A 285 HOH A 641 SITE 1 AC6 4 SER A 149 SER A 160 ASP A 267 MET A 268 SITE 1 AC7 5 SER A 37 THR A 38 CYS A 39 PHE A 85 SITE 2 AC7 5 HOH A 524 CRYST1 56.826 74.631 76.475 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017598 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013399 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013076 0.00000