data_4GT8 # _entry.id 4GT8 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4GT8 pdb_00004gt8 10.2210/pdb4gt8/pdb RCSB RCSB074603 ? ? WWPDB D_1000074603 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-08-28 2 'Structure model' 1 1 2024-02-28 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' database_2 4 2 'Structure model' pdbx_struct_conn_angle 5 2 'Structure model' struct_conn 6 2 'Structure model' struct_ref_seq_dif 7 2 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_database_2.pdbx_DOI' 2 2 'Structure model' '_database_2.pdbx_database_accession' 3 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 4 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 6 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 7 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 8 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 9 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 10 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 11 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 12 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 13 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 14 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 15 2 'Structure model' '_pdbx_struct_conn_angle.value' 16 2 'Structure model' '_struct_conn.pdbx_dist_value' 17 2 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 18 2 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 19 2 'Structure model' '_struct_conn.ptnr1_label_asym_id' 20 2 'Structure model' '_struct_conn.ptnr1_label_atom_id' 21 2 'Structure model' '_struct_conn.ptnr1_label_comp_id' 22 2 'Structure model' '_struct_conn.ptnr1_label_seq_id' 23 2 'Structure model' '_struct_ref_seq_dif.details' 24 2 'Structure model' '_struct_site.pdbx_auth_asym_id' 25 2 'Structure model' '_struct_site.pdbx_auth_comp_id' 26 2 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.entry_id 4GT8 _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2012-08-28 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Leonard, P.G.' 1 'Valverde, J.' 2 'Stock, A.M.' 3 # _citation.id primary _citation.title 'Structure of the Staphylococcus aureus VraS Catalytic and ATP-binding Domain' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Leonard, P.G.' 1 ? primary 'Valverde, J.' 2 ? primary 'Stock, A.M.' 3 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Sensor protein vraS' 15776.990 1 2.7.13.3 ? 'Catalytic and ATP-binding Domain' ? 2 non-polymer syn "ADENOSINE-5'-DIPHOSPHATE" 427.201 1 ? ? ? ? 3 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 4 water nat water 18.015 136 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GAMLKDKSLGEGIKDLVIDLQKKVPMKVVHEIQDFKVPKGIEDHLFRITQEAISNTLRHSNGTKVTVELFNKDDYLLLRI QDNGKGFNVDEKLEQSYGLKNMRERALEIGATFHIVSLPDSGTRIEVKAPLNKEDSYDD ; _entity_poly.pdbx_seq_one_letter_code_can ;GAMLKDKSLGEGIKDLVIDLQKKVPMKVVHEIQDFKVPKGIEDHLFRITQEAISNTLRHSNGTKVTVELFNKDDYLLLRI QDNGKGFNVDEKLEQSYGLKNMRERALEIGATFHIVSLPDSGTRIEVKAPLNKEDSYDD ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 "ADENOSINE-5'-DIPHOSPHATE" ADP 3 'MAGNESIUM ION' MG 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 ALA n 1 3 MET n 1 4 LEU n 1 5 LYS n 1 6 ASP n 1 7 LYS n 1 8 SER n 1 9 LEU n 1 10 GLY n 1 11 GLU n 1 12 GLY n 1 13 ILE n 1 14 LYS n 1 15 ASP n 1 16 LEU n 1 17 VAL n 1 18 ILE n 1 19 ASP n 1 20 LEU n 1 21 GLN n 1 22 LYS n 1 23 LYS n 1 24 VAL n 1 25 PRO n 1 26 MET n 1 27 LYS n 1 28 VAL n 1 29 VAL n 1 30 HIS n 1 31 GLU n 1 32 ILE n 1 33 GLN n 1 34 ASP n 1 35 PHE n 1 36 LYS n 1 37 VAL n 1 38 PRO n 1 39 LYS n 1 40 GLY n 1 41 ILE n 1 42 GLU n 1 43 ASP n 1 44 HIS n 1 45 LEU n 1 46 PHE n 1 47 ARG n 1 48 ILE n 1 49 THR n 1 50 GLN n 1 51 GLU n 1 52 ALA n 1 53 ILE n 1 54 SER n 1 55 ASN n 1 56 THR n 1 57 LEU n 1 58 ARG n 1 59 HIS n 1 60 SER n 1 61 ASN n 1 62 GLY n 1 63 THR n 1 64 LYS n 1 65 VAL n 1 66 THR n 1 67 VAL n 1 68 GLU n 1 69 LEU n 1 70 PHE n 1 71 ASN n 1 72 LYS n 1 73 ASP n 1 74 ASP n 1 75 TYR n 1 76 LEU n 1 77 LEU n 1 78 LEU n 1 79 ARG n 1 80 ILE n 1 81 GLN n 1 82 ASP n 1 83 ASN n 1 84 GLY n 1 85 LYS n 1 86 GLY n 1 87 PHE n 1 88 ASN n 1 89 VAL n 1 90 ASP n 1 91 GLU n 1 92 LYS n 1 93 LEU n 1 94 GLU n 1 95 GLN n 1 96 SER n 1 97 TYR n 1 98 GLY n 1 99 LEU n 1 100 LYS n 1 101 ASN n 1 102 MET n 1 103 ARG n 1 104 GLU n 1 105 ARG n 1 106 ALA n 1 107 LEU n 1 108 GLU n 1 109 ILE n 1 110 GLY n 1 111 ALA n 1 112 THR n 1 113 PHE n 1 114 HIS n 1 115 ILE n 1 116 VAL n 1 117 SER n 1 118 LEU n 1 119 PRO n 1 120 ASP n 1 121 SER n 1 122 GLY n 1 123 THR n 1 124 ARG n 1 125 ILE n 1 126 GLU n 1 127 VAL n 1 128 LYS n 1 129 ALA n 1 130 PRO n 1 131 LEU n 1 132 ASN n 1 133 LYS n 1 134 GLU n 1 135 ASP n 1 136 SER n 1 137 TYR n 1 138 ASP n 1 139 ASP n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'SAV1885, vraS' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'Mu50 / ATCC 700699' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Staphylococcus aureus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 158878 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3) T1R' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name P535 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ADP non-polymer n "ADENOSINE-5'-DIPHOSPHATE" ? 'C10 H15 N5 O10 P2' 427.201 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 209 209 GLY GLY A . n A 1 2 ALA 2 210 210 ALA ALA A . n A 1 3 MET 3 211 211 MET MET A . n A 1 4 LEU 4 212 212 LEU LEU A . n A 1 5 LYS 5 213 213 LYS LYS A . n A 1 6 ASP 6 214 214 ASP ASP A . n A 1 7 LYS 7 215 215 LYS LYS A . n A 1 8 SER 8 216 216 SER SER A . n A 1 9 LEU 9 217 217 LEU LEU A . n A 1 10 GLY 10 218 218 GLY GLY A . n A 1 11 GLU 11 219 219 GLU GLU A . n A 1 12 GLY 12 220 220 GLY GLY A . n A 1 13 ILE 13 221 221 ILE ILE A . n A 1 14 LYS 14 222 222 LYS LYS A . n A 1 15 ASP 15 223 223 ASP ASP A . n A 1 16 LEU 16 224 224 LEU LEU A . n A 1 17 VAL 17 225 225 VAL VAL A . n A 1 18 ILE 18 226 226 ILE ILE A . n A 1 19 ASP 19 227 227 ASP ASP A . n A 1 20 LEU 20 228 228 LEU LEU A . n A 1 21 GLN 21 229 229 GLN GLN A . n A 1 22 LYS 22 230 230 LYS LYS A . n A 1 23 LYS 23 231 231 LYS LYS A . n A 1 24 VAL 24 232 232 VAL VAL A . n A 1 25 PRO 25 233 233 PRO PRO A . n A 1 26 MET 26 234 234 MET MET A . n A 1 27 LYS 27 235 235 LYS LYS A . n A 1 28 VAL 28 236 236 VAL VAL A . n A 1 29 VAL 29 237 237 VAL VAL A . n A 1 30 HIS 30 238 238 HIS HIS A . n A 1 31 GLU 31 239 239 GLU GLU A . n A 1 32 ILE 32 240 240 ILE ILE A . n A 1 33 GLN 33 241 241 GLN GLN A . n A 1 34 ASP 34 242 242 ASP ASP A . n A 1 35 PHE 35 243 243 PHE PHE A . n A 1 36 LYS 36 244 244 LYS LYS A . n A 1 37 VAL 37 245 245 VAL VAL A . n A 1 38 PRO 38 246 246 PRO PRO A . n A 1 39 LYS 39 247 247 LYS LYS A . n A 1 40 GLY 40 248 248 GLY GLY A . n A 1 41 ILE 41 249 249 ILE ILE A . n A 1 42 GLU 42 250 250 GLU GLU A . n A 1 43 ASP 43 251 251 ASP ASP A . n A 1 44 HIS 44 252 252 HIS HIS A . n A 1 45 LEU 45 253 253 LEU LEU A . n A 1 46 PHE 46 254 254 PHE PHE A . n A 1 47 ARG 47 255 255 ARG ARG A . n A 1 48 ILE 48 256 256 ILE ILE A . n A 1 49 THR 49 257 257 THR THR A . n A 1 50 GLN 50 258 258 GLN GLN A . n A 1 51 GLU 51 259 259 GLU GLU A . n A 1 52 ALA 52 260 260 ALA ALA A . n A 1 53 ILE 53 261 261 ILE ILE A . n A 1 54 SER 54 262 262 SER SER A . n A 1 55 ASN 55 263 263 ASN ASN A . n A 1 56 THR 56 264 264 THR THR A . n A 1 57 LEU 57 265 265 LEU LEU A . n A 1 58 ARG 58 266 266 ARG ARG A . n A 1 59 HIS 59 267 267 HIS HIS A . n A 1 60 SER 60 268 268 SER SER A . n A 1 61 ASN 61 269 269 ASN ASN A . n A 1 62 GLY 62 270 270 GLY GLY A . n A 1 63 THR 63 271 271 THR THR A . n A 1 64 LYS 64 272 272 LYS LYS A . n A 1 65 VAL 65 273 273 VAL VAL A . n A 1 66 THR 66 274 274 THR THR A . n A 1 67 VAL 67 275 275 VAL VAL A . n A 1 68 GLU 68 276 276 GLU GLU A . n A 1 69 LEU 69 277 277 LEU LEU A . n A 1 70 PHE 70 278 278 PHE PHE A . n A 1 71 ASN 71 279 279 ASN ASN A . n A 1 72 LYS 72 280 280 LYS LYS A . n A 1 73 ASP 73 281 281 ASP ASP A . n A 1 74 ASP 74 282 282 ASP ASP A . n A 1 75 TYR 75 283 283 TYR TYR A . n A 1 76 LEU 76 284 284 LEU LEU A . n A 1 77 LEU 77 285 285 LEU LEU A . n A 1 78 LEU 78 286 286 LEU LEU A . n A 1 79 ARG 79 287 287 ARG ARG A . n A 1 80 ILE 80 288 288 ILE ILE A . n A 1 81 GLN 81 289 289 GLN GLN A . n A 1 82 ASP 82 290 290 ASP ASP A . n A 1 83 ASN 83 291 291 ASN ASN A . n A 1 84 GLY 84 292 292 GLY GLY A . n A 1 85 LYS 85 293 293 LYS LYS A . n A 1 86 GLY 86 294 294 GLY GLY A . n A 1 87 PHE 87 295 295 PHE PHE A . n A 1 88 ASN 88 296 296 ASN ASN A . n A 1 89 VAL 89 297 297 VAL VAL A . n A 1 90 ASP 90 298 298 ASP ASP A . n A 1 91 GLU 91 299 299 GLU GLU A . n A 1 92 LYS 92 300 300 LYS LYS A . n A 1 93 LEU 93 301 301 LEU LEU A . n A 1 94 GLU 94 302 302 GLU GLU A . n A 1 95 GLN 95 303 303 GLN GLN A . n A 1 96 SER 96 304 304 SER SER A . n A 1 97 TYR 97 305 305 TYR TYR A . n A 1 98 GLY 98 306 306 GLY GLY A . n A 1 99 LEU 99 307 307 LEU LEU A . n A 1 100 LYS 100 308 308 LYS LYS A . n A 1 101 ASN 101 309 309 ASN ASN A . n A 1 102 MET 102 310 310 MET MET A . n A 1 103 ARG 103 311 311 ARG ARG A . n A 1 104 GLU 104 312 312 GLU GLU A . n A 1 105 ARG 105 313 313 ARG ARG A . n A 1 106 ALA 106 314 314 ALA ALA A . n A 1 107 LEU 107 315 315 LEU LEU A . n A 1 108 GLU 108 316 316 GLU GLU A . n A 1 109 ILE 109 317 317 ILE ILE A . n A 1 110 GLY 110 318 318 GLY GLY A . n A 1 111 ALA 111 319 319 ALA ALA A . n A 1 112 THR 112 320 320 THR THR A . n A 1 113 PHE 113 321 321 PHE PHE A . n A 1 114 HIS 114 322 322 HIS HIS A . n A 1 115 ILE 115 323 323 ILE ILE A . n A 1 116 VAL 116 324 324 VAL VAL A . n A 1 117 SER 117 325 325 SER SER A . n A 1 118 LEU 118 326 326 LEU LEU A . n A 1 119 PRO 119 327 327 PRO PRO A . n A 1 120 ASP 120 328 328 ASP ASP A . n A 1 121 SER 121 329 329 SER SER A . n A 1 122 GLY 122 330 330 GLY GLY A . n A 1 123 THR 123 331 331 THR THR A . n A 1 124 ARG 124 332 332 ARG ARG A . n A 1 125 ILE 125 333 333 ILE ILE A . n A 1 126 GLU 126 334 334 GLU GLU A . n A 1 127 VAL 127 335 335 VAL VAL A . n A 1 128 LYS 128 336 336 LYS LYS A . n A 1 129 ALA 129 337 337 ALA ALA A . n A 1 130 PRO 130 338 338 PRO PRO A . n A 1 131 LEU 131 339 339 LEU LEU A . n A 1 132 ASN 132 340 340 ASN ASN A . n A 1 133 LYS 133 341 341 LYS LYS A . n A 1 134 GLU 134 342 ? ? ? A . n A 1 135 ASP 135 343 ? ? ? A . n A 1 136 SER 136 344 ? ? ? A . n A 1 137 TYR 137 345 ? ? ? A . n A 1 138 ASP 138 346 ? ? ? A . n A 1 139 ASP 139 347 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ADP 1 401 1 ADP ADP A . C 3 MG 1 402 2 MG MG A . D 4 HOH 1 501 1 HOH HOH A . D 4 HOH 2 502 2 HOH HOH A . D 4 HOH 3 503 3 HOH HOH A . D 4 HOH 4 504 4 HOH HOH A . D 4 HOH 5 505 5 HOH HOH A . D 4 HOH 6 506 6 HOH HOH A . D 4 HOH 7 507 7 HOH HOH A . D 4 HOH 8 508 8 HOH HOH A . D 4 HOH 9 509 9 HOH HOH A . D 4 HOH 10 510 10 HOH HOH A . D 4 HOH 11 511 11 HOH HOH A . D 4 HOH 12 512 12 HOH HOH A . D 4 HOH 13 513 13 HOH HOH A . D 4 HOH 14 514 14 HOH HOH A . D 4 HOH 15 515 15 HOH HOH A . D 4 HOH 16 516 16 HOH HOH A . D 4 HOH 17 517 17 HOH HOH A . D 4 HOH 18 518 18 HOH HOH A . D 4 HOH 19 519 19 HOH HOH A . D 4 HOH 20 520 20 HOH HOH A . D 4 HOH 21 521 21 HOH HOH A . D 4 HOH 22 522 22 HOH HOH A . D 4 HOH 23 523 23 HOH HOH A . D 4 HOH 24 524 24 HOH HOH A . D 4 HOH 25 525 25 HOH HOH A . D 4 HOH 26 526 26 HOH HOH A . D 4 HOH 27 527 27 HOH HOH A . D 4 HOH 28 528 28 HOH HOH A . D 4 HOH 29 529 29 HOH HOH A . D 4 HOH 30 530 30 HOH HOH A . D 4 HOH 31 531 31 HOH HOH A . D 4 HOH 32 532 32 HOH HOH A . D 4 HOH 33 533 33 HOH HOH A . D 4 HOH 34 534 34 HOH HOH A . D 4 HOH 35 535 35 HOH HOH A . D 4 HOH 36 536 36 HOH HOH A . D 4 HOH 37 537 37 HOH HOH A . D 4 HOH 38 538 38 HOH HOH A . D 4 HOH 39 539 39 HOH HOH A . D 4 HOH 40 540 40 HOH HOH A . D 4 HOH 41 541 41 HOH HOH A . D 4 HOH 42 542 42 HOH HOH A . D 4 HOH 43 543 43 HOH HOH A . D 4 HOH 44 544 44 HOH HOH A . D 4 HOH 45 545 45 HOH HOH A . D 4 HOH 46 546 46 HOH HOH A . D 4 HOH 47 547 47 HOH HOH A . D 4 HOH 48 548 48 HOH HOH A . D 4 HOH 49 549 49 HOH HOH A . D 4 HOH 50 550 50 HOH HOH A . D 4 HOH 51 551 51 HOH HOH A . D 4 HOH 52 552 52 HOH HOH A . D 4 HOH 53 553 53 HOH HOH A . D 4 HOH 54 554 54 HOH HOH A . D 4 HOH 55 555 55 HOH HOH A . D 4 HOH 56 556 56 HOH HOH A . D 4 HOH 57 557 57 HOH HOH A . D 4 HOH 58 558 58 HOH HOH A . D 4 HOH 59 559 59 HOH HOH A . D 4 HOH 60 560 60 HOH HOH A . D 4 HOH 61 561 61 HOH HOH A . D 4 HOH 62 562 62 HOH HOH A . D 4 HOH 63 563 63 HOH HOH A . D 4 HOH 64 564 64 HOH HOH A . D 4 HOH 65 565 65 HOH HOH A . D 4 HOH 66 566 66 HOH HOH A . D 4 HOH 67 567 67 HOH HOH A . D 4 HOH 68 568 68 HOH HOH A . D 4 HOH 69 569 69 HOH HOH A . D 4 HOH 70 570 70 HOH HOH A . D 4 HOH 71 571 71 HOH HOH A . D 4 HOH 72 572 72 HOH HOH A . D 4 HOH 73 573 73 HOH HOH A . D 4 HOH 74 574 74 HOH HOH A . D 4 HOH 75 575 75 HOH HOH A . D 4 HOH 76 576 76 HOH HOH A . D 4 HOH 77 577 77 HOH HOH A . D 4 HOH 78 578 78 HOH HOH A . D 4 HOH 79 579 79 HOH HOH A . D 4 HOH 80 580 80 HOH HOH A . D 4 HOH 81 581 81 HOH HOH A . D 4 HOH 82 582 82 HOH HOH A . D 4 HOH 83 583 83 HOH HOH A . D 4 HOH 84 584 84 HOH HOH A . D 4 HOH 85 585 85 HOH HOH A . D 4 HOH 86 586 86 HOH HOH A . D 4 HOH 87 587 87 HOH HOH A . D 4 HOH 88 588 88 HOH HOH A . D 4 HOH 89 589 89 HOH HOH A . D 4 HOH 90 590 90 HOH HOH A . D 4 HOH 91 591 91 HOH HOH A . D 4 HOH 92 592 92 HOH HOH A . D 4 HOH 93 593 93 HOH HOH A . D 4 HOH 94 594 94 HOH HOH A . D 4 HOH 95 595 95 HOH HOH A . D 4 HOH 96 596 96 HOH HOH A . D 4 HOH 97 597 97 HOH HOH A . D 4 HOH 98 598 98 HOH HOH A . D 4 HOH 99 599 99 HOH HOH A . D 4 HOH 100 600 100 HOH HOH A . D 4 HOH 101 601 101 HOH HOH A . D 4 HOH 102 602 102 HOH HOH A . D 4 HOH 103 603 103 HOH HOH A . D 4 HOH 104 604 104 HOH HOH A . D 4 HOH 105 605 105 HOH HOH A . D 4 HOH 106 606 106 HOH HOH A . D 4 HOH 107 607 107 HOH HOH A . D 4 HOH 108 608 108 HOH HOH A . D 4 HOH 109 609 109 HOH HOH A . D 4 HOH 110 610 110 HOH HOH A . D 4 HOH 111 611 111 HOH HOH A . D 4 HOH 112 612 112 HOH HOH A . D 4 HOH 113 613 113 HOH HOH A . D 4 HOH 114 614 114 HOH HOH A . D 4 HOH 115 615 115 HOH HOH A . D 4 HOH 116 616 116 HOH HOH A . D 4 HOH 117 617 117 HOH HOH A . D 4 HOH 118 618 118 HOH HOH A . D 4 HOH 119 619 119 HOH HOH A . D 4 HOH 120 620 120 HOH HOH A . D 4 HOH 121 621 121 HOH HOH A . D 4 HOH 122 622 122 HOH HOH A . D 4 HOH 123 623 123 HOH HOH A . D 4 HOH 124 624 124 HOH HOH A . D 4 HOH 125 625 125 HOH HOH A . D 4 HOH 126 626 126 HOH HOH A . D 4 HOH 127 627 127 HOH HOH A . D 4 HOH 128 628 128 HOH HOH A . D 4 HOH 129 629 129 HOH HOH A . D 4 HOH 130 630 130 HOH HOH A . D 4 HOH 131 631 131 HOH HOH A . D 4 HOH 132 632 132 HOH HOH A . D 4 HOH 133 633 133 HOH HOH A . D 4 HOH 134 634 134 HOH HOH A . D 4 HOH 135 635 135 HOH HOH A . D 4 HOH 136 636 136 HOH HOH A . # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 DENZO . ? program 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data reduction' http://www.hkl-xray.com/ ? ? 2 SCALEPACK . ? program 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 3 PHASER . ? program 'Randy J. Read' cimr-phaser@lists.cam.ac.uk phasing http://www-structmed.cimr.cam.ac.uk/phaser/ ? ? 4 RESOLVE . ? program 'Thomas C. Terwilliger' terwilliger@lanl.gov phasing http://www.solve.lanl.gov/ ? ? 5 PHENIX 1.8_1066 ? package 'Paul D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 6 PDB_EXTRACT 3.11 'April 22, 2011' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 7 ADSC Quantum ? ? ? ? 'data collection' ? ? ? # _cell.length_a 31.192 _cell.length_b 47.233 _cell.length_c 89.398 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 4GT8 _cell.pdbx_unique_axis ? _cell.Z_PDB 4 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.entry_id 4GT8 _symmetry.Int_Tables_number 19 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # _exptl.crystals_number 1 _exptl.entry_id 4GT8 _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.09 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 41.06 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.temp 293 _exptl_crystal_grow.pdbx_details '100 mM Tris-HCl, 450 mM MgCl2, 30% (w/v) PEG 3350, pH 8.5, vapor diffusion, temperature 293K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 270' _diffrn_detector.pdbx_collection_date 2012-03-05 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'Si 111 CHANNEL' _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.91810 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'CHESS BEAMLINE F1' _diffrn_source.pdbx_wavelength_list 0.91810 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site CHESS _diffrn_source.pdbx_synchrotron_beamline F1 # _reflns.entry_id 4GT8 _reflns.d_resolution_high 1.510 _reflns.d_resolution_low 30.000 _reflns.number_obs 21323 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_netI_over_sigmaI 5.600 _reflns.pdbx_chi_squared 1.823 _reflns.pdbx_redundancy 12.700 _reflns.percent_possible_obs 98.900 _reflns.observed_criterion_sigma_F 0 _reflns.observed_criterion_sigma_I 0 _reflns.number_all 21323 _reflns.pdbx_Rsym_value 0.115 _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.510 1.540 ? ? ? ? 2.0 ? 1.418 11.200 ? 1053 98.900 1 1 1.540 1.560 ? ? ? ? 2.3 ? 1.436 11.900 ? 1054 98.900 2 1 1.560 1.590 ? ? ? ? 2.8 ? 1.463 12.400 ? 1012 99.500 3 1 1.590 1.630 ? ? ? ? 3.3 ? 1.488 12.800 ? 1075 98.300 4 1 1.630 1.660 ? ? ? ? 3.9 0.988 1.542 12.900 ? 1030 98.600 5 1 1.660 1.700 ? ? ? ? 4.4 0.884 1.513 13.100 ? 1036 99.100 6 1 1.700 1.740 ? ? ? ? 5.4 0.745 1.548 12.900 ? 1065 98.800 7 1 1.740 1.790 ? ? ? ? 5.5 0.733 1.589 13.000 ? 1021 98.200 8 1 1.790 1.840 ? ? ? ? 7.0 0.571 1.664 12.800 ? 1056 98.100 9 1 1.840 1.900 ? ? ? ? 8.2 0.495 1.708 12.900 ? 1029 98.000 10 1 1.900 1.970 ? ? ? ? 11.6 0.351 1.785 12.800 ? 1073 98.700 11 1 1.970 2.050 ? ? ? ? 16.1 0.258 1.907 12.900 ? 1041 98.600 12 1 2.050 2.140 ? ? ? ? 17.6 0.226 1.904 12.700 ? 1051 99.000 13 1 2.140 2.260 ? ? ? ? 22.6 0.176 1.945 12.600 ? 1078 98.800 14 1 2.260 2.400 ? ? ? ? 25.6 0.156 2.014 12.700 ? 1059 99.000 15 1 2.400 2.580 ? ? ? ? 30.9 0.128 1.953 12.600 ? 1085 99.500 16 1 2.580 2.840 ? ? ? ? 39.0 0.103 2.036 12.700 ? 1090 99.700 17 1 2.840 3.250 ? ? ? ? 51.2 0.079 2.060 13.300 ? 1090 100.000 18 1 3.250 4.100 ? ? ? ? 68.8 0.063 2.435 13.600 ? 1124 99.900 19 1 4.100 30.000 ? ? ? ? 71.5 0.062 2.742 12.400 ? 1201 99.300 20 1 # _refine.entry_id 4GT8 _refine.ls_d_res_high 1.51 _refine.ls_d_res_low 29.4510 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 92.0800 _refine.ls_number_reflns_obs 19830 _refine.ls_number_reflns_all 19830 _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_R_Free_selection_details RANDOM _refine.details ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1840 _refine.ls_R_factor_R_work 0.1832 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.1990 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 5.0700 _refine.ls_number_reflns_R_free 1005 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 28.0859 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.1000 _refine.overall_SU_B ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set 0.8179 _refine.B_iso_max 63.120 _refine.B_iso_min 15.880 _refine.pdbx_overall_phase_error 24.1200 _refine.occupancy_max 1.000 _refine.occupancy_min 0.200 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1056 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 28 _refine_hist.number_atoms_solvent 136 _refine_hist.number_atoms_total 1220 _refine_hist.d_res_high 1.51 _refine_hist.d_res_low 29.4510 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id f_bond_d 1136 0.007 ? ? ? 'X-RAY DIFFRACTION' f_angle_d 1546 1.208 ? ? ? 'X-RAY DIFFRACTION' f_chiral_restr 175 0.072 ? ? ? 'X-RAY DIFFRACTION' f_plane_restr 194 0.004 ? ? ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 450 14.913 ? ? ? 'X-RAY DIFFRACTION' # loop_ _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.percent_reflns_obs _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_R_work _refine_ls_shell.R_factor_R_free _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id 1.51 1.5880 7 81.0000 2319 . 0.2852 0.3284 . 127 . 2446 . . 'X-RAY DIFFRACTION' 1.5880 1.6875 7 87.0000 2505 . 0.2398 0.2370 . 130 . 2635 . . 'X-RAY DIFFRACTION' 1.6875 1.8178 7 89.0000 2565 . 0.2153 0.2657 . 135 . 2700 . . 'X-RAY DIFFRACTION' 1.8178 2.0007 7 92.0000 2644 . 0.1859 0.2093 . 146 . 2790 . . 'X-RAY DIFFRACTION' 2.0007 2.2901 7 97.0000 2835 . 0.1673 0.2058 . 152 . 2987 . . 'X-RAY DIFFRACTION' 2.2901 2.8849 7 98.0000 2884 . 0.1822 0.2024 . 152 . 3036 . . 'X-RAY DIFFRACTION' 2.8849 29.4564 7 99.0000 3073 . 0.1661 0.1657 . 163 . 3236 . . 'X-RAY DIFFRACTION' # _struct.entry_id 4GT8 _struct.title 'Crystal Structure of the Catalytic and ATP-binding Domain from VraS in Complex with ADP' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4GT8 _struct_keywords.text ;Histidine kinase, ATP hydrolysis, Two-component system, Bacterial signalling, Kinase, ATP-binding, Phosphorylation, Membrane, TRANSFERASE ; _struct_keywords.pdbx_keywords TRANSFERASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code VRAS_STAAM _struct_ref.pdbx_db_accession Q7A2Q0 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;LKDKSLGEGIKDLVIDLQKKVPMKVVHEIQDFKVPKGIEDHLFRITQEAISNTLRHSNGTKVTVELFNKDDYLLLRIQDN GKGFNVDEKLEQSYGLKNMRERALEIGATFHIVSLPDSGTRIEVKAPLNKEDSYDD ; _struct_ref.pdbx_align_begin 212 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4GT8 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 4 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 139 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q7A2Q0 _struct_ref_seq.db_align_beg 212 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 347 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 212 _struct_ref_seq.pdbx_auth_seq_align_end 347 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4GT8 GLY A 1 ? UNP Q7A2Q0 ? ? 'expression tag' 209 1 1 4GT8 ALA A 2 ? UNP Q7A2Q0 ? ? 'expression tag' 210 2 1 4GT8 MET A 3 ? UNP Q7A2Q0 ? ? 'expression tag' 211 3 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 8 ? LYS A 22 ? SER A 216 LYS A 230 1 ? 15 HELX_P HELX_P2 2 PRO A 38 ? SER A 60 ? PRO A 246 SER A 268 1 ? 23 HELX_P HELX_P3 3 ASN A 88 ? LEU A 93 ? ASN A 296 LEU A 301 1 ? 6 HELX_P HELX_P4 4 SER A 96 ? ILE A 109 ? SER A 304 ILE A 317 1 ? 14 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A GLU 51 OE2 ? ? ? 1_555 C MG . MG ? ? A GLU 259 A MG 402 1_555 ? ? ? ? ? ? ? 2.043 ? ? metalc2 metalc ? ? A ASN 55 OD1 ? ? ? 1_555 C MG . MG ? ? A ASN 263 A MG 402 1_555 ? ? ? ? ? ? ? 2.048 ? ? metalc3 metalc ? ? B ADP . O2A ? ? ? 1_555 C MG . MG ? ? A ADP 401 A MG 402 1_555 ? ? ? ? ? ? ? 1.947 ? ? metalc4 metalc ? ? B ADP . O3B ? ? ? 1_555 C MG . MG ? ? A ADP 401 A MG 402 1_555 ? ? ? ? ? ? ? 2.070 ? ? metalc5 metalc ? ? C MG . MG ? ? ? 1_555 D HOH . O ? ? A MG 402 A HOH 574 1_555 ? ? ? ? ? ? ? 2.071 ? ? metalc6 metalc ? ? C MG . MG ? ? ? 1_555 D HOH . O ? ? A MG 402 A HOH 576 1_555 ? ? ? ? ? ? ? 2.073 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OE2 ? A GLU 51 ? A GLU 259 ? 1_555 MG ? C MG . ? A MG 402 ? 1_555 OD1 ? A ASN 55 ? A ASN 263 ? 1_555 89.4 ? 2 OE2 ? A GLU 51 ? A GLU 259 ? 1_555 MG ? C MG . ? A MG 402 ? 1_555 O2A ? B ADP . ? A ADP 401 ? 1_555 86.7 ? 3 OD1 ? A ASN 55 ? A ASN 263 ? 1_555 MG ? C MG . ? A MG 402 ? 1_555 O2A ? B ADP . ? A ADP 401 ? 1_555 88.6 ? 4 OE2 ? A GLU 51 ? A GLU 259 ? 1_555 MG ? C MG . ? A MG 402 ? 1_555 O3B ? B ADP . ? A ADP 401 ? 1_555 175.5 ? 5 OD1 ? A ASN 55 ? A ASN 263 ? 1_555 MG ? C MG . ? A MG 402 ? 1_555 O3B ? B ADP . ? A ADP 401 ? 1_555 91.0 ? 6 O2A ? B ADP . ? A ADP 401 ? 1_555 MG ? C MG . ? A MG 402 ? 1_555 O3B ? B ADP . ? A ADP 401 ? 1_555 88.8 ? 7 OE2 ? A GLU 51 ? A GLU 259 ? 1_555 MG ? C MG . ? A MG 402 ? 1_555 O ? D HOH . ? A HOH 574 ? 1_555 86.6 ? 8 OD1 ? A ASN 55 ? A ASN 263 ? 1_555 MG ? C MG . ? A MG 402 ? 1_555 O ? D HOH . ? A HOH 574 ? 1_555 86.9 ? 9 O2A ? B ADP . ? A ADP 401 ? 1_555 MG ? C MG . ? A MG 402 ? 1_555 O ? D HOH . ? A HOH 574 ? 1_555 172.0 ? 10 O3B ? B ADP . ? A ADP 401 ? 1_555 MG ? C MG . ? A MG 402 ? 1_555 O ? D HOH . ? A HOH 574 ? 1_555 97.9 ? 11 OE2 ? A GLU 51 ? A GLU 259 ? 1_555 MG ? C MG . ? A MG 402 ? 1_555 O ? D HOH . ? A HOH 576 ? 1_555 89.2 ? 12 OD1 ? A ASN 55 ? A ASN 263 ? 1_555 MG ? C MG . ? A MG 402 ? 1_555 O ? D HOH . ? A HOH 576 ? 1_555 176.3 ? 13 O2A ? B ADP . ? A ADP 401 ? 1_555 MG ? C MG . ? A MG 402 ? 1_555 O ? D HOH . ? A HOH 576 ? 1_555 94.7 ? 14 O3B ? B ADP . ? A ADP 401 ? 1_555 MG ? C MG . ? A MG 402 ? 1_555 O ? D HOH . ? A HOH 576 ? 1_555 90.7 ? 15 O ? D HOH . ? A HOH 574 ? 1_555 MG ? C MG . ? A MG 402 ? 1_555 O ? D HOH . ? A HOH 576 ? 1_555 89.7 ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 5 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LYS A 27 ? ILE A 32 ? LYS A 235 ILE A 240 A 2 LYS A 64 ? ASN A 71 ? LYS A 272 ASN A 279 A 3 TYR A 75 ? ASP A 82 ? TYR A 283 ASP A 290 A 4 GLY A 122 ? PRO A 130 ? GLY A 330 PRO A 338 A 5 THR A 112 ? LEU A 118 ? THR A 320 LEU A 326 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N GLU A 31 ? N GLU A 239 O VAL A 67 ? O VAL A 275 A 2 3 N GLU A 68 ? N GLU A 276 O ARG A 79 ? O ARG A 287 A 3 4 N LEU A 78 ? N LEU A 286 O VAL A 127 ? O VAL A 335 A 4 5 O ARG A 124 ? O ARG A 332 N VAL A 116 ? N VAL A 324 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A ADP 401 ? 25 'BINDING SITE FOR RESIDUE ADP A 401' AC2 Software A MG 402 ? 5 'BINDING SITE FOR RESIDUE MG A 402' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 25 GLU A 51 ? GLU A 259 . ? 1_555 ? 2 AC1 25 ASN A 55 ? ASN A 263 . ? 1_555 ? 3 AC1 25 THR A 56 ? THR A 264 . ? 1_555 ? 4 AC1 25 ARG A 58 ? ARG A 266 . ? 1_555 ? 5 AC1 25 HIS A 59 ? HIS A 267 . ? 1_555 ? 6 AC1 25 SER A 60 ? SER A 268 . ? 1_555 ? 7 AC1 25 ASP A 82 ? ASP A 290 . ? 1_555 ? 8 AC1 25 PHE A 87 ? PHE A 295 . ? 1_555 ? 9 AC1 25 LYS A 92 ? LYS A 300 . ? 1_555 ? 10 AC1 25 SER A 96 ? SER A 304 . ? 1_555 ? 11 AC1 25 TYR A 97 ? TYR A 305 . ? 1_555 ? 12 AC1 25 GLY A 98 ? GLY A 306 . ? 1_555 ? 13 AC1 25 LEU A 99 ? LEU A 307 . ? 1_555 ? 14 AC1 25 THR A 123 ? THR A 331 . ? 1_555 ? 15 AC1 25 MG C . ? MG A 402 . ? 1_555 ? 16 AC1 25 HOH D . ? HOH A 502 . ? 1_555 ? 17 AC1 25 HOH D . ? HOH A 503 . ? 1_555 ? 18 AC1 25 HOH D . ? HOH A 505 . ? 1_555 ? 19 AC1 25 HOH D . ? HOH A 528 . ? 1_555 ? 20 AC1 25 HOH D . ? HOH A 576 . ? 1_555 ? 21 AC1 25 HOH D . ? HOH A 582 . ? 1_555 ? 22 AC1 25 HOH D . ? HOH A 589 . ? 1_555 ? 23 AC1 25 HOH D . ? HOH A 602 . ? 1_555 ? 24 AC1 25 HOH D . ? HOH A 605 . ? 1_555 ? 25 AC1 25 HOH D . ? HOH A 629 . ? 1_555 ? 26 AC2 5 GLU A 51 ? GLU A 259 . ? 1_555 ? 27 AC2 5 ASN A 55 ? ASN A 263 . ? 1_555 ? 28 AC2 5 ADP B . ? ADP A 401 . ? 1_555 ? 29 AC2 5 HOH D . ? HOH A 574 . ? 1_555 ? 30 AC2 5 HOH D . ? HOH A 576 . ? 1_555 ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 213 ? ? 50.98 -106.71 2 1 ASP A 281 ? ? 68.85 -68.81 # _pdbx_phasing_MR.entry_id 4GT8 _pdbx_phasing_MR.method_rotation ? _pdbx_phasing_MR.method_translation ? _pdbx_phasing_MR.model_details ? _pdbx_phasing_MR.R_factor ? _pdbx_phasing_MR.R_rigid_body ? _pdbx_phasing_MR.correlation_coeff_Fo_to_Fc ? _pdbx_phasing_MR.correlation_coeff_Io_to_Ic ? _pdbx_phasing_MR.d_res_high_rotation 2.500 _pdbx_phasing_MR.d_res_low_rotation 29.450 _pdbx_phasing_MR.d_res_high_translation 2.500 _pdbx_phasing_MR.d_res_low_translation 29.450 _pdbx_phasing_MR.packing ? _pdbx_phasing_MR.reflns_percent_rotation ? _pdbx_phasing_MR.reflns_percent_translation ? _pdbx_phasing_MR.sigma_F_rotation ? _pdbx_phasing_MR.sigma_F_translation ? _pdbx_phasing_MR.sigma_I_rotation ? _pdbx_phasing_MR.sigma_I_translation ? # _phasing.method MR # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLU 342 ? A GLU 134 2 1 Y 1 A ASP 343 ? A ASP 135 3 1 Y 1 A SER 344 ? A SER 136 4 1 Y 1 A TYR 345 ? A TYR 137 5 1 Y 1 A ASP 346 ? A ASP 138 6 1 Y 1 A ASP 347 ? A ASP 139 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ADP PB P N N 1 ADP O1B O N N 2 ADP O2B O N N 3 ADP O3B O N N 4 ADP PA P N S 5 ADP O1A O N N 6 ADP O2A O N N 7 ADP O3A O N N 8 ADP "O5'" O N N 9 ADP "C5'" C N N 10 ADP "C4'" C N R 11 ADP "O4'" O N N 12 ADP "C3'" C N S 13 ADP "O3'" O N N 14 ADP "C2'" C N R 15 ADP "O2'" O N N 16 ADP "C1'" C N R 17 ADP N9 N Y N 18 ADP C8 C Y N 19 ADP N7 N Y N 20 ADP C5 C Y N 21 ADP C6 C Y N 22 ADP N6 N N N 23 ADP N1 N Y N 24 ADP C2 C Y N 25 ADP N3 N Y N 26 ADP C4 C Y N 27 ADP HOB2 H N N 28 ADP HOB3 H N N 29 ADP HOA2 H N N 30 ADP "H5'1" H N N 31 ADP "H5'2" H N N 32 ADP "H4'" H N N 33 ADP "H3'" H N N 34 ADP "HO3'" H N N 35 ADP "H2'" H N N 36 ADP "HO2'" H N N 37 ADP "H1'" H N N 38 ADP H8 H N N 39 ADP HN61 H N N 40 ADP HN62 H N N 41 ADP H2 H N N 42 ALA N N N N 43 ALA CA C N S 44 ALA C C N N 45 ALA O O N N 46 ALA CB C N N 47 ALA OXT O N N 48 ALA H H N N 49 ALA H2 H N N 50 ALA HA H N N 51 ALA HB1 H N N 52 ALA HB2 H N N 53 ALA HB3 H N N 54 ALA HXT H N N 55 ARG N N N N 56 ARG CA C N S 57 ARG C C N N 58 ARG O O N N 59 ARG CB C N N 60 ARG CG C N N 61 ARG CD C N N 62 ARG NE N N N 63 ARG CZ C N N 64 ARG NH1 N N N 65 ARG NH2 N N N 66 ARG OXT O N N 67 ARG H H N N 68 ARG H2 H N N 69 ARG HA H N N 70 ARG HB2 H N N 71 ARG HB3 H N N 72 ARG HG2 H N N 73 ARG HG3 H N N 74 ARG HD2 H N N 75 ARG HD3 H N N 76 ARG HE H N N 77 ARG HH11 H N N 78 ARG HH12 H N N 79 ARG HH21 H N N 80 ARG HH22 H N N 81 ARG HXT H N N 82 ASN N N N N 83 ASN CA C N S 84 ASN C C N N 85 ASN O O N N 86 ASN CB C N N 87 ASN CG C N N 88 ASN OD1 O N N 89 ASN ND2 N N N 90 ASN OXT O N N 91 ASN H H N N 92 ASN H2 H N N 93 ASN HA H N N 94 ASN HB2 H N N 95 ASN HB3 H N N 96 ASN HD21 H N N 97 ASN HD22 H N N 98 ASN HXT H N N 99 ASP N N N N 100 ASP CA C N S 101 ASP C C N N 102 ASP O O N N 103 ASP CB C N N 104 ASP CG C N N 105 ASP OD1 O N N 106 ASP OD2 O N N 107 ASP OXT O N N 108 ASP H H N N 109 ASP H2 H N N 110 ASP HA H N N 111 ASP HB2 H N N 112 ASP HB3 H N N 113 ASP HD2 H N N 114 ASP HXT H N N 115 GLN N N N N 116 GLN CA C N S 117 GLN C C N N 118 GLN O O N N 119 GLN CB C N N 120 GLN CG C N N 121 GLN CD C N N 122 GLN OE1 O N N 123 GLN NE2 N N N 124 GLN OXT O N N 125 GLN H H N N 126 GLN H2 H N N 127 GLN HA H N N 128 GLN HB2 H N N 129 GLN HB3 H N N 130 GLN HG2 H N N 131 GLN HG3 H N N 132 GLN HE21 H N N 133 GLN HE22 H N N 134 GLN HXT H N N 135 GLU N N N N 136 GLU CA C N S 137 GLU C C N N 138 GLU O O N N 139 GLU CB C N N 140 GLU CG C N N 141 GLU CD C N N 142 GLU OE1 O N N 143 GLU OE2 O N N 144 GLU OXT O N N 145 GLU H H N N 146 GLU H2 H N N 147 GLU HA H N N 148 GLU HB2 H N N 149 GLU HB3 H N N 150 GLU HG2 H N N 151 GLU HG3 H N N 152 GLU HE2 H N N 153 GLU HXT H N N 154 GLY N N N N 155 GLY CA C N N 156 GLY C C N N 157 GLY O O N N 158 GLY OXT O N N 159 GLY H H N N 160 GLY H2 H N N 161 GLY HA2 H N N 162 GLY HA3 H N N 163 GLY HXT H N N 164 HIS N N N N 165 HIS CA C N S 166 HIS C C N N 167 HIS O O N N 168 HIS CB C N N 169 HIS CG C Y N 170 HIS ND1 N Y N 171 HIS CD2 C Y N 172 HIS CE1 C Y N 173 HIS NE2 N Y N 174 HIS OXT O N N 175 HIS H H N N 176 HIS H2 H N N 177 HIS HA H N N 178 HIS HB2 H N N 179 HIS HB3 H N N 180 HIS HD1 H N N 181 HIS HD2 H N N 182 HIS HE1 H N N 183 HIS HE2 H N N 184 HIS HXT H N N 185 HOH O O N N 186 HOH H1 H N N 187 HOH H2 H N N 188 ILE N N N N 189 ILE CA C N S 190 ILE C C N N 191 ILE O O N N 192 ILE CB C N S 193 ILE CG1 C N N 194 ILE CG2 C N N 195 ILE CD1 C N N 196 ILE OXT O N N 197 ILE H H N N 198 ILE H2 H N N 199 ILE HA H N N 200 ILE HB H N N 201 ILE HG12 H N N 202 ILE HG13 H N N 203 ILE HG21 H N N 204 ILE HG22 H N N 205 ILE HG23 H N N 206 ILE HD11 H N N 207 ILE HD12 H N N 208 ILE HD13 H N N 209 ILE HXT H N N 210 LEU N N N N 211 LEU CA C N S 212 LEU C C N N 213 LEU O O N N 214 LEU CB C N N 215 LEU CG C N N 216 LEU CD1 C N N 217 LEU CD2 C N N 218 LEU OXT O N N 219 LEU H H N N 220 LEU H2 H N N 221 LEU HA H N N 222 LEU HB2 H N N 223 LEU HB3 H N N 224 LEU HG H N N 225 LEU HD11 H N N 226 LEU HD12 H N N 227 LEU HD13 H N N 228 LEU HD21 H N N 229 LEU HD22 H N N 230 LEU HD23 H N N 231 LEU HXT H N N 232 LYS N N N N 233 LYS CA C N S 234 LYS C C N N 235 LYS O O N N 236 LYS CB C N N 237 LYS CG C N N 238 LYS CD C N N 239 LYS CE C N N 240 LYS NZ N N N 241 LYS OXT O N N 242 LYS H H N N 243 LYS H2 H N N 244 LYS HA H N N 245 LYS HB2 H N N 246 LYS HB3 H N N 247 LYS HG2 H N N 248 LYS HG3 H N N 249 LYS HD2 H N N 250 LYS HD3 H N N 251 LYS HE2 H N N 252 LYS HE3 H N N 253 LYS HZ1 H N N 254 LYS HZ2 H N N 255 LYS HZ3 H N N 256 LYS HXT H N N 257 MET N N N N 258 MET CA C N S 259 MET C C N N 260 MET O O N N 261 MET CB C N N 262 MET CG C N N 263 MET SD S N N 264 MET CE C N N 265 MET OXT O N N 266 MET H H N N 267 MET H2 H N N 268 MET HA H N N 269 MET HB2 H N N 270 MET HB3 H N N 271 MET HG2 H N N 272 MET HG3 H N N 273 MET HE1 H N N 274 MET HE2 H N N 275 MET HE3 H N N 276 MET HXT H N N 277 MG MG MG N N 278 PHE N N N N 279 PHE CA C N S 280 PHE C C N N 281 PHE O O N N 282 PHE CB C N N 283 PHE CG C Y N 284 PHE CD1 C Y N 285 PHE CD2 C Y N 286 PHE CE1 C Y N 287 PHE CE2 C Y N 288 PHE CZ C Y N 289 PHE OXT O N N 290 PHE H H N N 291 PHE H2 H N N 292 PHE HA H N N 293 PHE HB2 H N N 294 PHE HB3 H N N 295 PHE HD1 H N N 296 PHE HD2 H N N 297 PHE HE1 H N N 298 PHE HE2 H N N 299 PHE HZ H N N 300 PHE HXT H N N 301 PRO N N N N 302 PRO CA C N S 303 PRO C C N N 304 PRO O O N N 305 PRO CB C N N 306 PRO CG C N N 307 PRO CD C N N 308 PRO OXT O N N 309 PRO H H N N 310 PRO HA H N N 311 PRO HB2 H N N 312 PRO HB3 H N N 313 PRO HG2 H N N 314 PRO HG3 H N N 315 PRO HD2 H N N 316 PRO HD3 H N N 317 PRO HXT H N N 318 SER N N N N 319 SER CA C N S 320 SER C C N N 321 SER O O N N 322 SER CB C N N 323 SER OG O N N 324 SER OXT O N N 325 SER H H N N 326 SER H2 H N N 327 SER HA H N N 328 SER HB2 H N N 329 SER HB3 H N N 330 SER HG H N N 331 SER HXT H N N 332 THR N N N N 333 THR CA C N S 334 THR C C N N 335 THR O O N N 336 THR CB C N R 337 THR OG1 O N N 338 THR CG2 C N N 339 THR OXT O N N 340 THR H H N N 341 THR H2 H N N 342 THR HA H N N 343 THR HB H N N 344 THR HG1 H N N 345 THR HG21 H N N 346 THR HG22 H N N 347 THR HG23 H N N 348 THR HXT H N N 349 TYR N N N N 350 TYR CA C N S 351 TYR C C N N 352 TYR O O N N 353 TYR CB C N N 354 TYR CG C Y N 355 TYR CD1 C Y N 356 TYR CD2 C Y N 357 TYR CE1 C Y N 358 TYR CE2 C Y N 359 TYR CZ C Y N 360 TYR OH O N N 361 TYR OXT O N N 362 TYR H H N N 363 TYR H2 H N N 364 TYR HA H N N 365 TYR HB2 H N N 366 TYR HB3 H N N 367 TYR HD1 H N N 368 TYR HD2 H N N 369 TYR HE1 H N N 370 TYR HE2 H N N 371 TYR HH H N N 372 TYR HXT H N N 373 VAL N N N N 374 VAL CA C N S 375 VAL C C N N 376 VAL O O N N 377 VAL CB C N N 378 VAL CG1 C N N 379 VAL CG2 C N N 380 VAL OXT O N N 381 VAL H H N N 382 VAL H2 H N N 383 VAL HA H N N 384 VAL HB H N N 385 VAL HG11 H N N 386 VAL HG12 H N N 387 VAL HG13 H N N 388 VAL HG21 H N N 389 VAL HG22 H N N 390 VAL HG23 H N N 391 VAL HXT H N N 392 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ADP PB O1B doub N N 1 ADP PB O2B sing N N 2 ADP PB O3B sing N N 3 ADP PB O3A sing N N 4 ADP O2B HOB2 sing N N 5 ADP O3B HOB3 sing N N 6 ADP PA O1A doub N N 7 ADP PA O2A sing N N 8 ADP PA O3A sing N N 9 ADP PA "O5'" sing N N 10 ADP O2A HOA2 sing N N 11 ADP "O5'" "C5'" sing N N 12 ADP "C5'" "C4'" sing N N 13 ADP "C5'" "H5'1" sing N N 14 ADP "C5'" "H5'2" sing N N 15 ADP "C4'" "O4'" sing N N 16 ADP "C4'" "C3'" sing N N 17 ADP "C4'" "H4'" sing N N 18 ADP "O4'" "C1'" sing N N 19 ADP "C3'" "O3'" sing N N 20 ADP "C3'" "C2'" sing N N 21 ADP "C3'" "H3'" sing N N 22 ADP "O3'" "HO3'" sing N N 23 ADP "C2'" "O2'" sing N N 24 ADP "C2'" "C1'" sing N N 25 ADP "C2'" "H2'" sing N N 26 ADP "O2'" "HO2'" sing N N 27 ADP "C1'" N9 sing N N 28 ADP "C1'" "H1'" sing N N 29 ADP N9 C8 sing Y N 30 ADP N9 C4 sing Y N 31 ADP C8 N7 doub Y N 32 ADP C8 H8 sing N N 33 ADP N7 C5 sing Y N 34 ADP C5 C6 sing Y N 35 ADP C5 C4 doub Y N 36 ADP C6 N6 sing N N 37 ADP C6 N1 doub Y N 38 ADP N6 HN61 sing N N 39 ADP N6 HN62 sing N N 40 ADP N1 C2 sing Y N 41 ADP C2 N3 doub Y N 42 ADP C2 H2 sing N N 43 ADP N3 C4 sing Y N 44 ALA N CA sing N N 45 ALA N H sing N N 46 ALA N H2 sing N N 47 ALA CA C sing N N 48 ALA CA CB sing N N 49 ALA CA HA sing N N 50 ALA C O doub N N 51 ALA C OXT sing N N 52 ALA CB HB1 sing N N 53 ALA CB HB2 sing N N 54 ALA CB HB3 sing N N 55 ALA OXT HXT sing N N 56 ARG N CA sing N N 57 ARG N H sing N N 58 ARG N H2 sing N N 59 ARG CA C sing N N 60 ARG CA CB sing N N 61 ARG CA HA sing N N 62 ARG C O doub N N 63 ARG C OXT sing N N 64 ARG CB CG sing N N 65 ARG CB HB2 sing N N 66 ARG CB HB3 sing N N 67 ARG CG CD sing N N 68 ARG CG HG2 sing N N 69 ARG CG HG3 sing N N 70 ARG CD NE sing N N 71 ARG CD HD2 sing N N 72 ARG CD HD3 sing N N 73 ARG NE CZ sing N N 74 ARG NE HE sing N N 75 ARG CZ NH1 sing N N 76 ARG CZ NH2 doub N N 77 ARG NH1 HH11 sing N N 78 ARG NH1 HH12 sing N N 79 ARG NH2 HH21 sing N N 80 ARG NH2 HH22 sing N N 81 ARG OXT HXT sing N N 82 ASN N CA sing N N 83 ASN N H sing N N 84 ASN N H2 sing N N 85 ASN CA C sing N N 86 ASN CA CB sing N N 87 ASN CA HA sing N N 88 ASN C O doub N N 89 ASN C OXT sing N N 90 ASN CB CG sing N N 91 ASN CB HB2 sing N N 92 ASN CB HB3 sing N N 93 ASN CG OD1 doub N N 94 ASN CG ND2 sing N N 95 ASN ND2 HD21 sing N N 96 ASN ND2 HD22 sing N N 97 ASN OXT HXT sing N N 98 ASP N CA sing N N 99 ASP N H sing N N 100 ASP N H2 sing N N 101 ASP CA C sing N N 102 ASP CA CB sing N N 103 ASP CA HA sing N N 104 ASP C O doub N N 105 ASP C OXT sing N N 106 ASP CB CG sing N N 107 ASP CB HB2 sing N N 108 ASP CB HB3 sing N N 109 ASP CG OD1 doub N N 110 ASP CG OD2 sing N N 111 ASP OD2 HD2 sing N N 112 ASP OXT HXT sing N N 113 GLN N CA sing N N 114 GLN N H sing N N 115 GLN N H2 sing N N 116 GLN CA C sing N N 117 GLN CA CB sing N N 118 GLN CA HA sing N N 119 GLN C O doub N N 120 GLN C OXT sing N N 121 GLN CB CG sing N N 122 GLN CB HB2 sing N N 123 GLN CB HB3 sing N N 124 GLN CG CD sing N N 125 GLN CG HG2 sing N N 126 GLN CG HG3 sing N N 127 GLN CD OE1 doub N N 128 GLN CD NE2 sing N N 129 GLN NE2 HE21 sing N N 130 GLN NE2 HE22 sing N N 131 GLN OXT HXT sing N N 132 GLU N CA sing N N 133 GLU N H sing N N 134 GLU N H2 sing N N 135 GLU CA C sing N N 136 GLU CA CB sing N N 137 GLU CA HA sing N N 138 GLU C O doub N N 139 GLU C OXT sing N N 140 GLU CB CG sing N N 141 GLU CB HB2 sing N N 142 GLU CB HB3 sing N N 143 GLU CG CD sing N N 144 GLU CG HG2 sing N N 145 GLU CG HG3 sing N N 146 GLU CD OE1 doub N N 147 GLU CD OE2 sing N N 148 GLU OE2 HE2 sing N N 149 GLU OXT HXT sing N N 150 GLY N CA sing N N 151 GLY N H sing N N 152 GLY N H2 sing N N 153 GLY CA C sing N N 154 GLY CA HA2 sing N N 155 GLY CA HA3 sing N N 156 GLY C O doub N N 157 GLY C OXT sing N N 158 GLY OXT HXT sing N N 159 HIS N CA sing N N 160 HIS N H sing N N 161 HIS N H2 sing N N 162 HIS CA C sing N N 163 HIS CA CB sing N N 164 HIS CA HA sing N N 165 HIS C O doub N N 166 HIS C OXT sing N N 167 HIS CB CG sing N N 168 HIS CB HB2 sing N N 169 HIS CB HB3 sing N N 170 HIS CG ND1 sing Y N 171 HIS CG CD2 doub Y N 172 HIS ND1 CE1 doub Y N 173 HIS ND1 HD1 sing N N 174 HIS CD2 NE2 sing Y N 175 HIS CD2 HD2 sing N N 176 HIS CE1 NE2 sing Y N 177 HIS CE1 HE1 sing N N 178 HIS NE2 HE2 sing N N 179 HIS OXT HXT sing N N 180 HOH O H1 sing N N 181 HOH O H2 sing N N 182 ILE N CA sing N N 183 ILE N H sing N N 184 ILE N H2 sing N N 185 ILE CA C sing N N 186 ILE CA CB sing N N 187 ILE CA HA sing N N 188 ILE C O doub N N 189 ILE C OXT sing N N 190 ILE CB CG1 sing N N 191 ILE CB CG2 sing N N 192 ILE CB HB sing N N 193 ILE CG1 CD1 sing N N 194 ILE CG1 HG12 sing N N 195 ILE CG1 HG13 sing N N 196 ILE CG2 HG21 sing N N 197 ILE CG2 HG22 sing N N 198 ILE CG2 HG23 sing N N 199 ILE CD1 HD11 sing N N 200 ILE CD1 HD12 sing N N 201 ILE CD1 HD13 sing N N 202 ILE OXT HXT sing N N 203 LEU N CA sing N N 204 LEU N H sing N N 205 LEU N H2 sing N N 206 LEU CA C sing N N 207 LEU CA CB sing N N 208 LEU CA HA sing N N 209 LEU C O doub N N 210 LEU C OXT sing N N 211 LEU CB CG sing N N 212 LEU CB HB2 sing N N 213 LEU CB HB3 sing N N 214 LEU CG CD1 sing N N 215 LEU CG CD2 sing N N 216 LEU CG HG sing N N 217 LEU CD1 HD11 sing N N 218 LEU CD1 HD12 sing N N 219 LEU CD1 HD13 sing N N 220 LEU CD2 HD21 sing N N 221 LEU CD2 HD22 sing N N 222 LEU CD2 HD23 sing N N 223 LEU OXT HXT sing N N 224 LYS N CA sing N N 225 LYS N H sing N N 226 LYS N H2 sing N N 227 LYS CA C sing N N 228 LYS CA CB sing N N 229 LYS CA HA sing N N 230 LYS C O doub N N 231 LYS C OXT sing N N 232 LYS CB CG sing N N 233 LYS CB HB2 sing N N 234 LYS CB HB3 sing N N 235 LYS CG CD sing N N 236 LYS CG HG2 sing N N 237 LYS CG HG3 sing N N 238 LYS CD CE sing N N 239 LYS CD HD2 sing N N 240 LYS CD HD3 sing N N 241 LYS CE NZ sing N N 242 LYS CE HE2 sing N N 243 LYS CE HE3 sing N N 244 LYS NZ HZ1 sing N N 245 LYS NZ HZ2 sing N N 246 LYS NZ HZ3 sing N N 247 LYS OXT HXT sing N N 248 MET N CA sing N N 249 MET N H sing N N 250 MET N H2 sing N N 251 MET CA C sing N N 252 MET CA CB sing N N 253 MET CA HA sing N N 254 MET C O doub N N 255 MET C OXT sing N N 256 MET CB CG sing N N 257 MET CB HB2 sing N N 258 MET CB HB3 sing N N 259 MET CG SD sing N N 260 MET CG HG2 sing N N 261 MET CG HG3 sing N N 262 MET SD CE sing N N 263 MET CE HE1 sing N N 264 MET CE HE2 sing N N 265 MET CE HE3 sing N N 266 MET OXT HXT sing N N 267 PHE N CA sing N N 268 PHE N H sing N N 269 PHE N H2 sing N N 270 PHE CA C sing N N 271 PHE CA CB sing N N 272 PHE CA HA sing N N 273 PHE C O doub N N 274 PHE C OXT sing N N 275 PHE CB CG sing N N 276 PHE CB HB2 sing N N 277 PHE CB HB3 sing N N 278 PHE CG CD1 doub Y N 279 PHE CG CD2 sing Y N 280 PHE CD1 CE1 sing Y N 281 PHE CD1 HD1 sing N N 282 PHE CD2 CE2 doub Y N 283 PHE CD2 HD2 sing N N 284 PHE CE1 CZ doub Y N 285 PHE CE1 HE1 sing N N 286 PHE CE2 CZ sing Y N 287 PHE CE2 HE2 sing N N 288 PHE CZ HZ sing N N 289 PHE OXT HXT sing N N 290 PRO N CA sing N N 291 PRO N CD sing N N 292 PRO N H sing N N 293 PRO CA C sing N N 294 PRO CA CB sing N N 295 PRO CA HA sing N N 296 PRO C O doub N N 297 PRO C OXT sing N N 298 PRO CB CG sing N N 299 PRO CB HB2 sing N N 300 PRO CB HB3 sing N N 301 PRO CG CD sing N N 302 PRO CG HG2 sing N N 303 PRO CG HG3 sing N N 304 PRO CD HD2 sing N N 305 PRO CD HD3 sing N N 306 PRO OXT HXT sing N N 307 SER N CA sing N N 308 SER N H sing N N 309 SER N H2 sing N N 310 SER CA C sing N N 311 SER CA CB sing N N 312 SER CA HA sing N N 313 SER C O doub N N 314 SER C OXT sing N N 315 SER CB OG sing N N 316 SER CB HB2 sing N N 317 SER CB HB3 sing N N 318 SER OG HG sing N N 319 SER OXT HXT sing N N 320 THR N CA sing N N 321 THR N H sing N N 322 THR N H2 sing N N 323 THR CA C sing N N 324 THR CA CB sing N N 325 THR CA HA sing N N 326 THR C O doub N N 327 THR C OXT sing N N 328 THR CB OG1 sing N N 329 THR CB CG2 sing N N 330 THR CB HB sing N N 331 THR OG1 HG1 sing N N 332 THR CG2 HG21 sing N N 333 THR CG2 HG22 sing N N 334 THR CG2 HG23 sing N N 335 THR OXT HXT sing N N 336 TYR N CA sing N N 337 TYR N H sing N N 338 TYR N H2 sing N N 339 TYR CA C sing N N 340 TYR CA CB sing N N 341 TYR CA HA sing N N 342 TYR C O doub N N 343 TYR C OXT sing N N 344 TYR CB CG sing N N 345 TYR CB HB2 sing N N 346 TYR CB HB3 sing N N 347 TYR CG CD1 doub Y N 348 TYR CG CD2 sing Y N 349 TYR CD1 CE1 sing Y N 350 TYR CD1 HD1 sing N N 351 TYR CD2 CE2 doub Y N 352 TYR CD2 HD2 sing N N 353 TYR CE1 CZ doub Y N 354 TYR CE1 HE1 sing N N 355 TYR CE2 CZ sing Y N 356 TYR CE2 HE2 sing N N 357 TYR CZ OH sing N N 358 TYR OH HH sing N N 359 TYR OXT HXT sing N N 360 VAL N CA sing N N 361 VAL N H sing N N 362 VAL N H2 sing N N 363 VAL CA C sing N N 364 VAL CA CB sing N N 365 VAL CA HA sing N N 366 VAL C O doub N N 367 VAL C OXT sing N N 368 VAL CB CG1 sing N N 369 VAL CB CG2 sing N N 370 VAL CB HB sing N N 371 VAL CG1 HG11 sing N N 372 VAL CG1 HG12 sing N N 373 VAL CG1 HG13 sing N N 374 VAL CG2 HG21 sing N N 375 VAL CG2 HG22 sing N N 376 VAL CG2 HG23 sing N N 377 VAL OXT HXT sing N N 378 # _atom_sites.entry_id 4GT8 _atom_sites.fract_transf_matrix[1][1] 0.032060 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.021172 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.011186 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C MG N O P S # loop_