data_4GYX # _entry.id 4GYX # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4GYX pdb_00004gyx 10.2210/pdb4gyx/pdb RCSB RCSB074807 ? ? WWPDB D_1000074807 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4GYX _pdbx_database_status.recvd_initial_deposition_date 2012-09-05 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Boudko, S.P.' 1 'Bachinger, H.P.' 2 # _citation.id primary _citation.title 'The NC2 Domain of Type IX Collagen Determines the Chain Register of the Triple Helix.' _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 287 _citation.page_first 44536 _citation.page_last 44545 _citation.year 2012 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23132862 _citation.pdbx_database_id_DOI 10.1074/jbc.M112.417543 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Boudko, S.P.' 1 ? primary 'Bachinger, H.P.' 2 ? # _cell.entry_id 4GYX _cell.length_a 19.070 _cell.length_b 26.990 _cell.length_c 64.120 _cell.angle_alpha 90.00 _cell.angle_beta 92.48 _cell.angle_gamma 90.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4GYX _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'Type III collagen fragment in a host peptide stabilized by the cysteine knot' 2875.201 3 ? ? 'Von Willebrand Factor binding fragment' ? 2 water nat water 18.015 122 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'GP(HYP)GP(HYP)GPRGQ(HYP)GVMGF(HYP)GP(HYP)GP(HYP)GPCCGGV' _entity_poly.pdbx_seq_one_letter_code_can GPPGPPGPRGQPGVMGFPGPPGPPGPCCGGV _entity_poly.pdbx_strand_id A,B,C _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 PRO n 1 3 HYP n 1 4 GLY n 1 5 PRO n 1 6 HYP n 1 7 GLY n 1 8 PRO n 1 9 ARG n 1 10 GLY n 1 11 GLN n 1 12 HYP n 1 13 GLY n 1 14 VAL n 1 15 MET n 1 16 GLY n 1 17 PHE n 1 18 HYP n 1 19 GLY n 1 20 PRO n 1 21 HYP n 1 22 GLY n 1 23 PRO n 1 24 HYP n 1 25 GLY n 1 26 PRO n 1 27 CYS n 1 28 CYS n 1 29 GLY n 1 30 GLY n 1 31 VAL n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name human _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ;This sequence contains two fragments of human type III collagen: the von Willebrand factor A3 domain binding region and the cysteine knot ; # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 4GYX _struct_ref.pdbx_db_accession 4GYX _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4GYX A 1 ? 31 ? 4GYX 1 ? 31 ? 1 31 2 1 4GYX B 1 ? 31 ? 4GYX 1 ? 31 ? 1 31 3 1 4GYX C 1 ? 31 ? 4GYX 1 ? 31 ? 1 31 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 HYP 'L-peptide linking' n 4-HYDROXYPROLINE HYDROXYPROLINE 'C5 H9 N O3' 131.130 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4GYX _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.91 _exptl_crystal.density_percent_sol 35.64 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 295 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '28% PEG 3350, 0.1M sodium acetate, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 295K' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type NOIR-1 _diffrn_detector.pdbx_collection_date 2011-05-29 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Rosenbaum-Rock Si(111) sagitally focused monochromator' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ALS BEAMLINE 4.2.2' _diffrn_source.pdbx_synchrotron_site ALS _diffrn_source.pdbx_synchrotron_beamline 4.2.2 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.000 # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 4GYX _reflns.observed_criterion_sigma_I 1.0 _reflns.observed_criterion_sigma_F 1.0 _reflns.d_resolution_low 19.05 _reflns.d_resolution_high 1.49 _reflns.number_obs 10752 _reflns.number_all 10872 _reflns.percent_possible_obs 98.9 _reflns.pdbx_Rmerge_I_obs 0.083 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 8.2 _reflns.B_iso_Wilson_estimate 15.6 _reflns.pdbx_redundancy 3.5 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? # loop_ _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_ordinal _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.percent_possible_all _reflns_shell.Rmerge_I_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_unique_obs _reflns_shell.pdbx_chi_squared 1 1 1.49 1.57 93.1 0.383 ? 3.2 3.1 ? ? ? ? ? ? 1 2 4.71 19.05 98.4 0.068 ? 14.5 3.4 ? ? ? ? ? ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 4GYX _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 10716 _refine.ls_number_reflns_all 10857 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.38 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 19.05 _refine.ls_d_res_high 1.490 _refine.ls_percent_reflns_obs 98.70 _refine.ls_R_factor_obs 0.1805 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1760 _refine.ls_R_factor_R_free 0.2216 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 9.88 _refine.ls_number_reflns_R_free 1059 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 4DMT' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.12 _refine.pdbx_overall_phase_error 22.80 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 530 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 122 _refine_hist.number_atoms_total 652 _refine_hist.d_res_high 1.490 _refine_hist.d_res_low 19.05 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.006 ? ? 567 'X-RAY DIFFRACTION' ? f_angle_d 2.146 ? ? 781 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 18.938 ? ? 262 'X-RAY DIFFRACTION' ? f_chiral_restr 0.109 ? ? 75 'X-RAY DIFFRACTION' ? f_plane_restr 0.005 ? ? 104 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.number_reflns_obs 'X-RAY DIFFRACTION' . 1.49 1.5580 1083 0.2672 90.00 0.2829 . . 120 . . . . 'X-RAY DIFFRACTION' . 1.5580 1.6401 1199 0.1903 100.00 0.2034 . . 133 . . . . 'X-RAY DIFFRACTION' . 1.6401 1.7427 1247 0.1832 100.00 0.2106 . . 133 . . . . 'X-RAY DIFFRACTION' . 1.7427 1.8772 1195 0.1764 100.00 0.2528 . . 132 . . . . 'X-RAY DIFFRACTION' . 1.8772 2.0659 1224 0.1645 100.00 0.2125 . . 135 . . . . 'X-RAY DIFFRACTION' . 2.0659 2.3644 1217 0.1602 100.00 0.2102 . . 139 . . . . 'X-RAY DIFFRACTION' . 2.3644 2.9770 1221 0.1812 100.00 0.2193 . . 129 . . . . 'X-RAY DIFFRACTION' . 2.9770 19.0537 1271 0.1695 100.00 0.2211 . . 138 . . . . # _struct.entry_id 4GYX _struct.title 'The von Willebrand Factor A3 domain binding region of type III collagen stabilized by the cysteine knot' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4GYX _struct_keywords.pdbx_keywords 'STRUCTURAL PROTEIN, BLOOD CLOTTING' _struct_keywords.text ;collagen triple helix, type III collagen cysteine knot, blood clotting, von Willebrand factor A3 domain, 4-hydroxylation, extracellular matrix, STRUCTURAL PROTEIN ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 2 ? E N N 2 ? F N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 27 SG ? ? ? 1_555 B CYS 28 SG ? ? A CYS 27 B CYS 28 1_555 ? ? ? ? ? ? ? 2.025 ? ? covale1 covale both ? A PRO 2 C ? ? ? 1_555 A HYP 3 N ? ? A PRO 2 A HYP 3 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale2 covale both ? A HYP 3 C ? ? ? 1_555 A GLY 4 N ? ? A HYP 3 A GLY 4 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale3 covale both ? A PRO 5 C ? ? ? 1_555 A HYP 6 N ? ? A PRO 5 A HYP 6 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale4 covale both ? A HYP 6 C ? ? ? 1_555 A GLY 7 N ? ? A HYP 6 A GLY 7 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale5 covale both ? A GLN 11 C ? ? ? 1_555 A HYP 12 N ? ? A GLN 11 A HYP 12 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale6 covale both ? A HYP 12 C ? ? ? 1_555 A GLY 13 N ? ? A HYP 12 A GLY 13 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale7 covale both ? A PHE 17 C ? ? ? 1_555 A HYP 18 N ? ? A PHE 17 A HYP 18 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale8 covale both ? A HYP 18 C ? ? ? 1_555 A GLY 19 N ? ? A HYP 18 A GLY 19 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale9 covale both ? A PRO 20 C ? ? ? 1_555 A HYP 21 N ? ? A PRO 20 A HYP 21 1_555 ? ? ? ? ? ? ? 1.339 ? ? covale10 covale both ? A HYP 21 C ? ? ? 1_555 A GLY 22 N ? ? A HYP 21 A GLY 22 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale11 covale both ? A PRO 23 C ? ? ? 1_555 A HYP 24 N ? ? A PRO 23 A HYP 24 1_555 ? ? ? ? ? ? ? 1.321 ? ? covale12 covale both ? A HYP 24 C ? ? ? 1_555 A GLY 25 N ? ? A HYP 24 A GLY 25 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale13 covale both ? B PRO 2 C ? ? ? 1_555 B HYP 3 N ? ? B PRO 2 B HYP 3 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale14 covale both ? B HYP 3 C ? ? ? 1_555 B GLY 4 N ? ? B HYP 3 B GLY 4 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale15 covale both ? B PRO 5 C ? ? ? 1_555 B HYP 6 N ? ? B PRO 5 B HYP 6 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale16 covale both ? B HYP 6 C ? ? ? 1_555 B GLY 7 N ? ? B HYP 6 B GLY 7 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale17 covale both ? B GLN 11 C ? ? ? 1_555 B HYP 12 N ? ? B GLN 11 B HYP 12 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale18 covale both ? B HYP 12 C ? ? ? 1_555 B GLY 13 N ? ? B HYP 12 B GLY 13 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale19 covale both ? B PHE 17 C ? ? ? 1_555 B HYP 18 N ? ? B PHE 17 B HYP 18 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale20 covale both ? B HYP 18 C ? ? ? 1_555 B GLY 19 N ? ? B HYP 18 B GLY 19 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale21 covale both ? B PRO 20 C ? ? ? 1_555 B HYP 21 N ? ? B PRO 20 B HYP 21 1_555 ? ? ? ? ? ? ? 1.322 ? ? covale22 covale both ? B HYP 21 C ? ? ? 1_555 B GLY 22 N ? ? B HYP 21 B GLY 22 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale23 covale both ? B PRO 23 C ? ? ? 1_555 B HYP 24 N ? ? B PRO 23 B HYP 24 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale24 covale both ? B HYP 24 C ? ? ? 1_555 B GLY 25 N ? ? B HYP 24 B GLY 25 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale25 covale both ? C PRO 2 C ? ? ? 1_555 C HYP 3 N ? ? C PRO 2 C HYP 3 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale26 covale both ? C HYP 3 C ? ? ? 1_555 C GLY 4 N ? ? C HYP 3 C GLY 4 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale27 covale both ? C PRO 5 C ? ? ? 1_555 C HYP 6 N ? ? C PRO 5 C HYP 6 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale28 covale both ? C HYP 6 C ? ? ? 1_555 C GLY 7 N ? ? C HYP 6 C GLY 7 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale29 covale both ? C GLN 11 C ? ? ? 1_555 C HYP 12 N ? ? C GLN 11 C HYP 12 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale30 covale both ? C HYP 12 C ? ? ? 1_555 C GLY 13 N ? ? C HYP 12 C GLY 13 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale31 covale both ? C PHE 17 C ? ? ? 1_555 C HYP 18 N ? ? C PHE 17 C HYP 18 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale32 covale both ? C HYP 18 C ? ? ? 1_555 C GLY 19 N ? ? C HYP 18 C GLY 19 1_555 ? ? ? ? ? ? ? 1.339 ? ? covale33 covale both ? C PRO 20 C ? ? ? 1_555 C HYP 21 N ? ? C PRO 20 C HYP 21 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale34 covale both ? C HYP 21 C ? ? ? 1_555 C GLY 22 N ? ? C HYP 21 C GLY 22 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale35 covale both ? C PRO 23 C ? ? ? 1_555 C HYP 24 N ? ? C PRO 23 C HYP 24 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale36 covale both ? C HYP 24 C ? ? ? 1_555 C GLY 25 N ? ? C HYP 24 C GLY 25 1_555 ? ? ? ? ? ? ? 1.328 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # _database_PDB_matrix.entry_id 4GYX _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4GYX _atom_sites.fract_transf_matrix[1][1] 0.052438 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.002271 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.037051 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015610 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 PRO 2 2 2 PRO PRO A . n A 1 3 HYP 3 3 3 HYP HYP A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 PRO 5 5 5 PRO PRO A . n A 1 6 HYP 6 6 6 HYP HYP A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 PRO 8 8 8 PRO PRO A . n A 1 9 ARG 9 9 9 ARG ARG A . n A 1 10 GLY 10 10 10 GLY GLY A . n A 1 11 GLN 11 11 11 GLN GLN A . n A 1 12 HYP 12 12 12 HYP HYP A . n A 1 13 GLY 13 13 13 GLY GLY A . n A 1 14 VAL 14 14 14 VAL VAL A . n A 1 15 MET 15 15 15 MET MET A . n A 1 16 GLY 16 16 16 GLY GLY A . n A 1 17 PHE 17 17 17 PHE PHE A . n A 1 18 HYP 18 18 18 HYP HYP A . n A 1 19 GLY 19 19 19 GLY GLY A . n A 1 20 PRO 20 20 20 PRO PRO A . n A 1 21 HYP 21 21 21 HYP HYP A . n A 1 22 GLY 22 22 22 GLY GLY A . n A 1 23 PRO 23 23 23 PRO PRO A . n A 1 24 HYP 24 24 24 HYP HYP A . n A 1 25 GLY 25 25 25 GLY GLY A . n A 1 26 PRO 26 26 26 PRO PRO A . n A 1 27 CYS 27 27 27 CYS CYS A . n A 1 28 CYS 28 28 28 CYS CYS A . n A 1 29 GLY 29 29 ? ? ? A . n A 1 30 GLY 30 30 ? ? ? A . n A 1 31 VAL 31 31 ? ? ? A . n B 1 1 GLY 1 1 1 GLY GLY B . n B 1 2 PRO 2 2 2 PRO PRO B . n B 1 3 HYP 3 3 3 HYP HYP B . n B 1 4 GLY 4 4 4 GLY GLY B . n B 1 5 PRO 5 5 5 PRO PRO B . n B 1 6 HYP 6 6 6 HYP HYP B . n B 1 7 GLY 7 7 7 GLY GLY B . n B 1 8 PRO 8 8 8 PRO PRO B . n B 1 9 ARG 9 9 9 ARG ARG B . n B 1 10 GLY 10 10 10 GLY GLY B . n B 1 11 GLN 11 11 11 GLN GLN B . n B 1 12 HYP 12 12 12 HYP HYP B . n B 1 13 GLY 13 13 13 GLY GLY B . n B 1 14 VAL 14 14 14 VAL VAL B . n B 1 15 MET 15 15 15 MET MET B . n B 1 16 GLY 16 16 16 GLY GLY B . n B 1 17 PHE 17 17 17 PHE PHE B . n B 1 18 HYP 18 18 18 HYP HYP B . n B 1 19 GLY 19 19 19 GLY GLY B . n B 1 20 PRO 20 20 20 PRO PRO B . n B 1 21 HYP 21 21 21 HYP HYP B . n B 1 22 GLY 22 22 22 GLY GLY B . n B 1 23 PRO 23 23 23 PRO PRO B . n B 1 24 HYP 24 24 24 HYP HYP B . n B 1 25 GLY 25 25 25 GLY GLY B . n B 1 26 PRO 26 26 26 PRO PRO B . n B 1 27 CYS 27 27 27 CYS CYS B . n B 1 28 CYS 28 28 28 CYS CYS B . n B 1 29 GLY 29 29 ? ? ? B . n B 1 30 GLY 30 30 ? ? ? B . n B 1 31 VAL 31 31 ? ? ? B . n C 1 1 GLY 1 1 1 GLY GLY C . n C 1 2 PRO 2 2 2 PRO PRO C . n C 1 3 HYP 3 3 3 HYP HYP C . n C 1 4 GLY 4 4 4 GLY GLY C . n C 1 5 PRO 5 5 5 PRO PRO C . n C 1 6 HYP 6 6 6 HYP HYP C . n C 1 7 GLY 7 7 7 GLY GLY C . n C 1 8 PRO 8 8 8 PRO PRO C . n C 1 9 ARG 9 9 9 ARG ARG C . n C 1 10 GLY 10 10 10 GLY GLY C . n C 1 11 GLN 11 11 11 GLN GLN C . n C 1 12 HYP 12 12 12 HYP HYP C . n C 1 13 GLY 13 13 13 GLY GLY C . n C 1 14 VAL 14 14 14 VAL VAL C . n C 1 15 MET 15 15 15 MET MET C . n C 1 16 GLY 16 16 16 GLY GLY C . n C 1 17 PHE 17 17 17 PHE PHE C . n C 1 18 HYP 18 18 18 HYP HYP C . n C 1 19 GLY 19 19 19 GLY GLY C . n C 1 20 PRO 20 20 20 PRO PRO C . n C 1 21 HYP 21 21 21 HYP HYP C . n C 1 22 GLY 22 22 22 GLY GLY C . n C 1 23 PRO 23 23 23 PRO PRO C . n C 1 24 HYP 24 24 24 HYP HYP C . n C 1 25 GLY 25 25 25 GLY GLY C . n C 1 26 PRO 26 26 26 PRO PRO C . n C 1 27 CYS 27 27 ? ? ? C . n C 1 28 CYS 28 28 ? ? ? C . n C 1 29 GLY 29 29 ? ? ? C . n C 1 30 GLY 30 30 ? ? ? C . n C 1 31 VAL 31 31 ? ? ? C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 HOH 1 101 101 HOH HOH A . D 2 HOH 2 102 102 HOH HOH A . D 2 HOH 3 103 103 HOH HOH A . D 2 HOH 4 104 104 HOH HOH A . D 2 HOH 5 105 105 HOH HOH A . D 2 HOH 6 106 106 HOH HOH A . D 2 HOH 7 107 107 HOH HOH A . D 2 HOH 8 108 108 HOH HOH A . D 2 HOH 9 109 109 HOH HOH A . D 2 HOH 10 110 110 HOH HOH A . D 2 HOH 11 111 111 HOH HOH A . D 2 HOH 12 112 112 HOH HOH A . D 2 HOH 13 113 113 HOH HOH A . D 2 HOH 14 114 114 HOH HOH A . D 2 HOH 15 115 115 HOH HOH A . D 2 HOH 16 116 116 HOH HOH A . D 2 HOH 17 117 117 HOH HOH A . D 2 HOH 18 118 118 HOH HOH A . D 2 HOH 19 119 119 HOH HOH A . D 2 HOH 20 120 120 HOH HOH A . D 2 HOH 21 121 121 HOH HOH A . D 2 HOH 22 122 122 HOH HOH A . D 2 HOH 23 123 123 HOH HOH A . D 2 HOH 24 124 124 HOH HOH A . D 2 HOH 25 125 125 HOH HOH A . D 2 HOH 26 126 126 HOH HOH A . D 2 HOH 27 127 127 HOH HOH A . D 2 HOH 28 128 128 HOH HOH A . D 2 HOH 29 129 129 HOH HOH A . D 2 HOH 30 130 130 HOH HOH A . D 2 HOH 31 131 131 HOH HOH A . D 2 HOH 32 132 132 HOH HOH A . D 2 HOH 33 133 133 HOH HOH A . D 2 HOH 34 134 134 HOH HOH A . D 2 HOH 35 135 135 HOH HOH A . D 2 HOH 36 136 136 HOH HOH A . D 2 HOH 37 137 133 HOH HOH A . D 2 HOH 38 138 135 HOH HOH A . E 2 HOH 1 101 101 HOH HOH B . E 2 HOH 2 102 102 HOH HOH B . E 2 HOH 3 103 103 HOH HOH B . E 2 HOH 4 104 104 HOH HOH B . E 2 HOH 5 105 105 HOH HOH B . E 2 HOH 6 106 106 HOH HOH B . E 2 HOH 7 107 107 HOH HOH B . E 2 HOH 8 108 108 HOH HOH B . E 2 HOH 9 109 109 HOH HOH B . E 2 HOH 10 110 110 HOH HOH B . E 2 HOH 11 111 111 HOH HOH B . E 2 HOH 12 112 112 HOH HOH B . E 2 HOH 13 113 113 HOH HOH B . E 2 HOH 14 114 114 HOH HOH B . E 2 HOH 15 115 115 HOH HOH B . E 2 HOH 16 116 116 HOH HOH B . E 2 HOH 17 117 117 HOH HOH B . E 2 HOH 18 118 118 HOH HOH B . E 2 HOH 19 119 119 HOH HOH B . E 2 HOH 20 120 120 HOH HOH B . E 2 HOH 21 121 121 HOH HOH B . E 2 HOH 22 122 122 HOH HOH B . E 2 HOH 23 123 123 HOH HOH B . E 2 HOH 24 124 124 HOH HOH B . E 2 HOH 25 125 125 HOH HOH B . E 2 HOH 26 126 126 HOH HOH B . E 2 HOH 27 127 127 HOH HOH B . E 2 HOH 28 128 128 HOH HOH B . E 2 HOH 29 129 129 HOH HOH B . E 2 HOH 30 130 130 HOH HOH B . E 2 HOH 31 131 131 HOH HOH B . E 2 HOH 32 132 132 HOH HOH B . E 2 HOH 33 133 134 HOH HOH B . E 2 HOH 34 134 136 HOH HOH B . E 2 HOH 35 135 137 HOH HOH B . E 2 HOH 36 136 138 HOH HOH B . E 2 HOH 37 137 139 HOH HOH B . E 2 HOH 38 138 140 HOH HOH B . E 2 HOH 39 139 141 HOH HOH B . E 2 HOH 40 140 142 HOH HOH B . E 2 HOH 41 141 143 HOH HOH B . E 2 HOH 42 142 136 HOH HOH B . F 2 HOH 1 101 144 HOH HOH C . F 2 HOH 2 102 145 HOH HOH C . F 2 HOH 3 103 146 HOH HOH C . F 2 HOH 4 104 101 HOH HOH C . F 2 HOH 5 105 102 HOH HOH C . F 2 HOH 6 106 103 HOH HOH C . F 2 HOH 7 107 104 HOH HOH C . F 2 HOH 8 108 105 HOH HOH C . F 2 HOH 9 109 106 HOH HOH C . F 2 HOH 10 110 107 HOH HOH C . F 2 HOH 11 111 108 HOH HOH C . F 2 HOH 12 112 109 HOH HOH C . F 2 HOH 13 113 110 HOH HOH C . F 2 HOH 14 114 111 HOH HOH C . F 2 HOH 15 115 112 HOH HOH C . F 2 HOH 16 116 113 HOH HOH C . F 2 HOH 17 117 114 HOH HOH C . F 2 HOH 18 118 115 HOH HOH C . F 2 HOH 19 119 116 HOH HOH C . F 2 HOH 20 120 117 HOH HOH C . F 2 HOH 21 121 118 HOH HOH C . F 2 HOH 22 122 119 HOH HOH C . F 2 HOH 23 123 120 HOH HOH C . F 2 HOH 24 124 121 HOH HOH C . F 2 HOH 25 125 122 HOH HOH C . F 2 HOH 26 126 123 HOH HOH C . F 2 HOH 27 127 124 HOH HOH C . F 2 HOH 28 128 125 HOH HOH C . F 2 HOH 29 129 126 HOH HOH C . F 2 HOH 30 130 127 HOH HOH C . F 2 HOH 31 131 128 HOH HOH C . F 2 HOH 32 132 129 HOH HOH C . F 2 HOH 33 133 130 HOH HOH C . F 2 HOH 34 134 131 HOH HOH C . F 2 HOH 35 135 132 HOH HOH C . F 2 HOH 36 136 133 HOH HOH C . F 2 HOH 37 137 134 HOH HOH C . F 2 HOH 38 138 135 HOH HOH C . F 2 HOH 39 139 137 HOH HOH C . F 2 HOH 40 140 138 HOH HOH C . F 2 HOH 41 141 139 HOH HOH C . F 2 HOH 42 142 140 HOH HOH C . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A HYP 3 A HYP 3 ? PRO 4-HYDROXYPROLINE 2 A HYP 6 A HYP 6 ? PRO 4-HYDROXYPROLINE 3 A HYP 12 A HYP 12 ? PRO 4-HYDROXYPROLINE 4 A HYP 18 A HYP 18 ? PRO 4-HYDROXYPROLINE 5 A HYP 21 A HYP 21 ? PRO 4-HYDROXYPROLINE 6 A HYP 24 A HYP 24 ? PRO 4-HYDROXYPROLINE 7 B HYP 3 B HYP 3 ? PRO 4-HYDROXYPROLINE 8 B HYP 6 B HYP 6 ? PRO 4-HYDROXYPROLINE 9 B HYP 12 B HYP 12 ? PRO 4-HYDROXYPROLINE 10 B HYP 18 B HYP 18 ? PRO 4-HYDROXYPROLINE 11 B HYP 21 B HYP 21 ? PRO 4-HYDROXYPROLINE 12 B HYP 24 B HYP 24 ? PRO 4-HYDROXYPROLINE 13 C HYP 3 C HYP 3 ? PRO 4-HYDROXYPROLINE 14 C HYP 6 C HYP 6 ? PRO 4-HYDROXYPROLINE 15 C HYP 12 C HYP 12 ? PRO 4-HYDROXYPROLINE 16 C HYP 18 C HYP 18 ? PRO 4-HYDROXYPROLINE 17 C HYP 21 C HYP 21 ? PRO 4-HYDROXYPROLINE 18 C HYP 24 C HYP 24 ? PRO 4-HYDROXYPROLINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4990 ? 1 MORE -29 ? 1 'SSA (A^2)' 4890 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-10-17 2 'Structure model' 1 1 2012-11-21 3 'Structure model' 1 2 2013-01-16 4 'Structure model' 1 3 2017-11-15 5 'Structure model' 1 4 2023-09-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Refinement description' 4 5 'Structure model' 'Data collection' 5 5 'Structure model' 'Database references' 6 5 'Structure model' 'Derived calculations' 7 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' chem_comp_atom 3 5 'Structure model' chem_comp_bond 4 5 'Structure model' database_2 5 5 'Structure model' pdbx_initial_refinement_model 6 5 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_database_2.pdbx_DOI' 2 5 'Structure model' '_database_2.pdbx_database_accession' 3 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined -9.6491 0.3420 32.2667 0.6618 1.0589 0.4224 -0.0100 0.3240 0.0209 1.1144 0.4949 3.3583 -0.5008 -1.5304 0.1053 0.0466 -0.7423 0.0241 0.9908 -0.0132 0.6103 -0.0004 -0.1600 -0.0938 'X-RAY DIFFRACTION' 2 ? refined 16.0164 0.3106 4.6527 0.0582 0.0584 0.0860 0.0055 -0.0436 0.0030 5.2629 2.4301 3.7772 0.0539 -2.4950 -0.2638 -0.0051 -0.1402 -0.0883 -0.0618 -0.0109 -0.0826 -0.0032 -0.0542 0.0171 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 ? ? ? ? ? ? ? ? ? '(CHAIN A AND RESSEQ 1:9) OR (CHAIN B AND RESSEQ 1:9) OR (CHAIN C AND RESSEQ 1:9)' 'X-RAY DIFFRACTION' 2 2 ? ? ? ? ? ? ? ? ? '(CHAIN A AND RESSEQ 10:28) OR (CHAIN B AND RESSEQ 10:28) OR (CHAIN C AND RESSEQ 10:26)' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal AMoRE phasing . ? 1 PHENIX refinement '(phenix.refine: 1.8_1069)' ? 2 MOSFLM 'data reduction' . ? 3 SCALA 'data scaling' . ? 4 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 117 ? ? O A HOH 133 ? ? 2.14 2 1 O B CYS 28 ? ? O B HOH 140 ? ? 2.18 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A CYS 28 ? CB ? A CYS 28 CB 2 1 Y 1 A CYS 28 ? SG ? A CYS 28 SG 3 1 Y 1 B ARG 9 ? NE ? B ARG 9 NE 4 1 Y 1 B ARG 9 ? CZ ? B ARG 9 CZ 5 1 Y 1 B ARG 9 ? NH1 ? B ARG 9 NH1 6 1 Y 1 B ARG 9 ? NH2 ? B ARG 9 NH2 7 1 Y 1 C GLN 11 ? CG ? C GLN 11 CG 8 1 Y 1 C GLN 11 ? CD ? C GLN 11 CD 9 1 Y 1 C GLN 11 ? OE1 ? C GLN 11 OE1 10 1 Y 1 C GLN 11 ? NE2 ? C GLN 11 NE2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 29 ? A GLY 29 2 1 Y 1 A GLY 30 ? A GLY 30 3 1 Y 1 A VAL 31 ? A VAL 31 4 1 Y 1 B GLY 29 ? B GLY 29 5 1 Y 1 B GLY 30 ? B GLY 30 6 1 Y 1 B VAL 31 ? B VAL 31 7 1 Y 1 C CYS 27 ? C CYS 27 8 1 Y 1 C CYS 28 ? C CYS 28 9 1 Y 1 C GLY 29 ? C GLY 29 10 1 Y 1 C GLY 30 ? C GLY 30 11 1 Y 1 C VAL 31 ? C VAL 31 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ARG N N N N 1 ARG CA C N S 2 ARG C C N N 3 ARG O O N N 4 ARG CB C N N 5 ARG CG C N N 6 ARG CD C N N 7 ARG NE N N N 8 ARG CZ C N N 9 ARG NH1 N N N 10 ARG NH2 N N N 11 ARG OXT O N N 12 ARG H H N N 13 ARG H2 H N N 14 ARG HA H N N 15 ARG HB2 H N N 16 ARG HB3 H N N 17 ARG HG2 H N N 18 ARG HG3 H N N 19 ARG HD2 H N N 20 ARG HD3 H N N 21 ARG HE H N N 22 ARG HH11 H N N 23 ARG HH12 H N N 24 ARG HH21 H N N 25 ARG HH22 H N N 26 ARG HXT H N N 27 CYS N N N N 28 CYS CA C N R 29 CYS C C N N 30 CYS O O N N 31 CYS CB C N N 32 CYS SG S N N 33 CYS OXT O N N 34 CYS H H N N 35 CYS H2 H N N 36 CYS HA H N N 37 CYS HB2 H N N 38 CYS HB3 H N N 39 CYS HG H N N 40 CYS HXT H N N 41 GLN N N N N 42 GLN CA C N S 43 GLN C C N N 44 GLN O O N N 45 GLN CB C N N 46 GLN CG C N N 47 GLN CD C N N 48 GLN OE1 O N N 49 GLN NE2 N N N 50 GLN OXT O N N 51 GLN H H N N 52 GLN H2 H N N 53 GLN HA H N N 54 GLN HB2 H N N 55 GLN HB3 H N N 56 GLN HG2 H N N 57 GLN HG3 H N N 58 GLN HE21 H N N 59 GLN HE22 H N N 60 GLN HXT H N N 61 GLY N N N N 62 GLY CA C N N 63 GLY C C N N 64 GLY O O N N 65 GLY OXT O N N 66 GLY H H N N 67 GLY H2 H N N 68 GLY HA2 H N N 69 GLY HA3 H N N 70 GLY HXT H N N 71 HOH O O N N 72 HOH H1 H N N 73 HOH H2 H N N 74 HYP N N N N 75 HYP CA C N S 76 HYP C C N N 77 HYP O O N N 78 HYP CB C N N 79 HYP CG C N R 80 HYP CD C N N 81 HYP OD1 O N N 82 HYP OXT O N N 83 HYP H H N N 84 HYP HA H N N 85 HYP HB2 H N N 86 HYP HB3 H N N 87 HYP HG H N N 88 HYP HD22 H N N 89 HYP HD23 H N N 90 HYP HD1 H N N 91 HYP HXT H N N 92 MET N N N N 93 MET CA C N S 94 MET C C N N 95 MET O O N N 96 MET CB C N N 97 MET CG C N N 98 MET SD S N N 99 MET CE C N N 100 MET OXT O N N 101 MET H H N N 102 MET H2 H N N 103 MET HA H N N 104 MET HB2 H N N 105 MET HB3 H N N 106 MET HG2 H N N 107 MET HG3 H N N 108 MET HE1 H N N 109 MET HE2 H N N 110 MET HE3 H N N 111 MET HXT H N N 112 PHE N N N N 113 PHE CA C N S 114 PHE C C N N 115 PHE O O N N 116 PHE CB C N N 117 PHE CG C Y N 118 PHE CD1 C Y N 119 PHE CD2 C Y N 120 PHE CE1 C Y N 121 PHE CE2 C Y N 122 PHE CZ C Y N 123 PHE OXT O N N 124 PHE H H N N 125 PHE H2 H N N 126 PHE HA H N N 127 PHE HB2 H N N 128 PHE HB3 H N N 129 PHE HD1 H N N 130 PHE HD2 H N N 131 PHE HE1 H N N 132 PHE HE2 H N N 133 PHE HZ H N N 134 PHE HXT H N N 135 PRO N N N N 136 PRO CA C N S 137 PRO C C N N 138 PRO O O N N 139 PRO CB C N N 140 PRO CG C N N 141 PRO CD C N N 142 PRO OXT O N N 143 PRO H H N N 144 PRO HA H N N 145 PRO HB2 H N N 146 PRO HB3 H N N 147 PRO HG2 H N N 148 PRO HG3 H N N 149 PRO HD2 H N N 150 PRO HD3 H N N 151 PRO HXT H N N 152 VAL N N N N 153 VAL CA C N S 154 VAL C C N N 155 VAL O O N N 156 VAL CB C N N 157 VAL CG1 C N N 158 VAL CG2 C N N 159 VAL OXT O N N 160 VAL H H N N 161 VAL H2 H N N 162 VAL HA H N N 163 VAL HB H N N 164 VAL HG11 H N N 165 VAL HG12 H N N 166 VAL HG13 H N N 167 VAL HG21 H N N 168 VAL HG22 H N N 169 VAL HG23 H N N 170 VAL HXT H N N 171 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ARG N CA sing N N 1 ARG N H sing N N 2 ARG N H2 sing N N 3 ARG CA C sing N N 4 ARG CA CB sing N N 5 ARG CA HA sing N N 6 ARG C O doub N N 7 ARG C OXT sing N N 8 ARG CB CG sing N N 9 ARG CB HB2 sing N N 10 ARG CB HB3 sing N N 11 ARG CG CD sing N N 12 ARG CG HG2 sing N N 13 ARG CG HG3 sing N N 14 ARG CD NE sing N N 15 ARG CD HD2 sing N N 16 ARG CD HD3 sing N N 17 ARG NE CZ sing N N 18 ARG NE HE sing N N 19 ARG CZ NH1 sing N N 20 ARG CZ NH2 doub N N 21 ARG NH1 HH11 sing N N 22 ARG NH1 HH12 sing N N 23 ARG NH2 HH21 sing N N 24 ARG NH2 HH22 sing N N 25 ARG OXT HXT sing N N 26 CYS N CA sing N N 27 CYS N H sing N N 28 CYS N H2 sing N N 29 CYS CA C sing N N 30 CYS CA CB sing N N 31 CYS CA HA sing N N 32 CYS C O doub N N 33 CYS C OXT sing N N 34 CYS CB SG sing N N 35 CYS CB HB2 sing N N 36 CYS CB HB3 sing N N 37 CYS SG HG sing N N 38 CYS OXT HXT sing N N 39 GLN N CA sing N N 40 GLN N H sing N N 41 GLN N H2 sing N N 42 GLN CA C sing N N 43 GLN CA CB sing N N 44 GLN CA HA sing N N 45 GLN C O doub N N 46 GLN C OXT sing N N 47 GLN CB CG sing N N 48 GLN CB HB2 sing N N 49 GLN CB HB3 sing N N 50 GLN CG CD sing N N 51 GLN CG HG2 sing N N 52 GLN CG HG3 sing N N 53 GLN CD OE1 doub N N 54 GLN CD NE2 sing N N 55 GLN NE2 HE21 sing N N 56 GLN NE2 HE22 sing N N 57 GLN OXT HXT sing N N 58 GLY N CA sing N N 59 GLY N H sing N N 60 GLY N H2 sing N N 61 GLY CA C sing N N 62 GLY CA HA2 sing N N 63 GLY CA HA3 sing N N 64 GLY C O doub N N 65 GLY C OXT sing N N 66 GLY OXT HXT sing N N 67 HOH O H1 sing N N 68 HOH O H2 sing N N 69 HYP N CA sing N N 70 HYP N CD sing N N 71 HYP N H sing N N 72 HYP CA C sing N N 73 HYP CA CB sing N N 74 HYP CA HA sing N N 75 HYP C O doub N N 76 HYP C OXT sing N N 77 HYP CB CG sing N N 78 HYP CB HB2 sing N N 79 HYP CB HB3 sing N N 80 HYP CG CD sing N N 81 HYP CG OD1 sing N N 82 HYP CG HG sing N N 83 HYP CD HD22 sing N N 84 HYP CD HD23 sing N N 85 HYP OD1 HD1 sing N N 86 HYP OXT HXT sing N N 87 MET N CA sing N N 88 MET N H sing N N 89 MET N H2 sing N N 90 MET CA C sing N N 91 MET CA CB sing N N 92 MET CA HA sing N N 93 MET C O doub N N 94 MET C OXT sing N N 95 MET CB CG sing N N 96 MET CB HB2 sing N N 97 MET CB HB3 sing N N 98 MET CG SD sing N N 99 MET CG HG2 sing N N 100 MET CG HG3 sing N N 101 MET SD CE sing N N 102 MET CE HE1 sing N N 103 MET CE HE2 sing N N 104 MET CE HE3 sing N N 105 MET OXT HXT sing N N 106 PHE N CA sing N N 107 PHE N H sing N N 108 PHE N H2 sing N N 109 PHE CA C sing N N 110 PHE CA CB sing N N 111 PHE CA HA sing N N 112 PHE C O doub N N 113 PHE C OXT sing N N 114 PHE CB CG sing N N 115 PHE CB HB2 sing N N 116 PHE CB HB3 sing N N 117 PHE CG CD1 doub Y N 118 PHE CG CD2 sing Y N 119 PHE CD1 CE1 sing Y N 120 PHE CD1 HD1 sing N N 121 PHE CD2 CE2 doub Y N 122 PHE CD2 HD2 sing N N 123 PHE CE1 CZ doub Y N 124 PHE CE1 HE1 sing N N 125 PHE CE2 CZ sing Y N 126 PHE CE2 HE2 sing N N 127 PHE CZ HZ sing N N 128 PHE OXT HXT sing N N 129 PRO N CA sing N N 130 PRO N CD sing N N 131 PRO N H sing N N 132 PRO CA C sing N N 133 PRO CA CB sing N N 134 PRO CA HA sing N N 135 PRO C O doub N N 136 PRO C OXT sing N N 137 PRO CB CG sing N N 138 PRO CB HB2 sing N N 139 PRO CB HB3 sing N N 140 PRO CG CD sing N N 141 PRO CG HG2 sing N N 142 PRO CG HG3 sing N N 143 PRO CD HD2 sing N N 144 PRO CD HD3 sing N N 145 PRO OXT HXT sing N N 146 VAL N CA sing N N 147 VAL N H sing N N 148 VAL N H2 sing N N 149 VAL CA C sing N N 150 VAL CA CB sing N N 151 VAL CA HA sing N N 152 VAL C O doub N N 153 VAL C OXT sing N N 154 VAL CB CG1 sing N N 155 VAL CB CG2 sing N N 156 VAL CB HB sing N N 157 VAL CG1 HG11 sing N N 158 VAL CG1 HG12 sing N N 159 VAL CG1 HG13 sing N N 160 VAL CG2 HG21 sing N N 161 VAL CG2 HG22 sing N N 162 VAL CG2 HG23 sing N N 163 VAL OXT HXT sing N N 164 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 4DMT _pdbx_initial_refinement_model.details 'PDB ENTRY 4DMT' #