HEADER HYDROLASE 10-SEP-12 4H17 TITLE CRYSTAL STRUCTURE OF AN ISOCHORISMATASE (PP1826) FROM PSEUDOMONAS TITLE 2 PUTIDA KT2440 AT 1.60 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYDROLASE, ISOCHORISMATASE FAMILY; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS PUTIDA KT2440; SOURCE 3 ORGANISM_TAXID: 160488; SOURCE 4 STRAIN: KT2440; SOURCE 5 GENE: PP_1826; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS ROSSMANN-LIKE FOLD, STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL KEYWDS 2 GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI-BIOLOGY, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 3 01-FEB-23 4H17 1 REMARK SEQADV LINK REVDAT 2 15-NOV-17 4H17 1 REMARK REVDAT 1 14-NOV-12 4H17 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF AN ISOCHORISMATASE (PP1826) FROM JRNL TITL 2 PSEUDOMONAS PUTIDA KT2440 AT 1.60 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.97 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 51033 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM + TWIN LAW REMARK 3 R VALUE (WORKING + TEST SET) : 0.137 REMARK 3 R VALUE (WORKING SET) : 0.136 REMARK 3 FREE R VALUE : 0.156 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2586 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3157 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.15 REMARK 3 BIN R VALUE (WORKING SET) : 0.1830 REMARK 3 BIN FREE R VALUE SET COUNT : 147 REMARK 3 BIN FREE R VALUE : 0.2580 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2957 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 42 REMARK 3 SOLVENT ATOMS : 442 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.92 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.61 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.81000 REMARK 3 B22 (A**2) : 5.06000 REMARK 3 B33 (A**2) : -2.25000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.015 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.015 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.035 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.759 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.972 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.966 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3265 ; 0.013 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3140 ; 0.005 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4457 ; 1.600 ; 1.996 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7261 ; 1.206 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 439 ; 6.219 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 129 ;30.180 ;23.256 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 515 ;12.050 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 25 ;18.953 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 505 ; 0.094 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3780 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 719 ; 0.005 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 3 195 B 3 195 11366 0.13 0.05 REMARK 3 REMARK 3 TWIN DETAILS REMARK 3 NUMBER OF TWIN DOMAINS : 2 REMARK 3 TWIN DOMAIN : 1 REMARK 3 TWIN OPERATOR : H, K, L REMARK 3 TWIN FRACTION : 0.645 REMARK 3 TWIN DOMAIN : 2 REMARK 3 TWIN OPERATOR : K, H, -L REMARK 3 TWIN FRACTION : 0.355 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 196 REMARK 3 ORIGIN FOR THE GROUP (A): -4.1024 1.0632 11.2988 REMARK 3 T TENSOR REMARK 3 T11: 0.0294 T22: 0.0046 REMARK 3 T33: 0.0059 T12: -0.0005 REMARK 3 T13: -0.0026 T23: -0.0024 REMARK 3 L TENSOR REMARK 3 L11: 0.2340 L22: 0.0976 REMARK 3 L33: 0.1624 L12: -0.0607 REMARK 3 L13: 0.0394 L23: -0.0595 REMARK 3 S TENSOR REMARK 3 S11: 0.0054 S12: 0.0118 S13: -0.0300 REMARK 3 S21: 0.0038 S22: 0.0143 S23: 0.0059 REMARK 3 S31: 0.0109 S32: -0.0045 S33: -0.0197 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 3 B 196 REMARK 3 ORIGIN FOR THE GROUP (A): 10.6905 13.2487 27.2255 REMARK 3 T TENSOR REMARK 3 T11: 0.0347 T22: 0.0035 REMARK 3 T33: 0.0059 T12: -0.0027 REMARK 3 T13: 0.0025 T23: 0.0009 REMARK 3 L TENSOR REMARK 3 L11: 0.3216 L22: 0.2601 REMARK 3 L33: 0.2747 L12: -0.0631 REMARK 3 L13: -0.0268 L23: 0.0940 REMARK 3 S TENSOR REMARK 3 S11: 0.0128 S12: -0.0286 S13: -0.0279 REMARK 3 S21: 0.0234 S22: 0.0154 S23: -0.0008 REMARK 3 S31: -0.0175 S32: 0.0168 S33: -0.0282 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. A MET-INHIBITION PROTOCOL WAS USED FOR REMARK 3 SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE REMARK 3 OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. 3. ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B REMARK 3 FACTORS. ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U REMARK 3 FACTORS. 4. WATERS WERE EXCLUDED FROM AUTOMATIC TLS ASSIGNMENT. REMARK 3 5. SULFATE (SO4) AND 1,2-ETHANEDIOL (EDO) FROM THE REMARK 3 CRYSTALLIZATION AND CRYO CONDITION ARE MODELED. 6. DATA ARE REMARK 3 PSUEDO-MEROHEDRALLY TWINNED WITH TWIN LAW (K, H, -L). THE REMARK 3 REFINED TWIN FRACTION WAS 0.36. THE R-FREE TEST SET REFLECTIONS REMARK 3 WERE CHOSEN AT RANDOM WITH THE TWIN LAW INCLUDED. REMARK 4 REMARK 4 4H17 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-SEP-12. REMARK 100 THE DEPOSITION ID IS D_1000074889. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-JUL-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91837,0.97925,0.97910 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE MARCH 15, 2012 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51103 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 28.973 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 3.810 REMARK 200 R MERGE (I) : 0.03800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.64 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 3.83 REMARK 200 R MERGE FOR SHELL (I) : 0.53600 REMARK 200 R SYM FOR SHELL (I) : 0.53600 REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHARP, SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.200M (NH4)2SO4, 20.00% PEG-3350, NO REMARK 280 BUFFER PH 6.0, NANODROP, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.58450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 78.29650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 24.67400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 78.29650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.58450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 24.67400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: CRYSTAL PACKING ANALYSIS SUGGESTS THE ASSIGNMENT OF A DIMER REMARK 300 AS THE SIGNIFICANT OLIGOMERIZATION STATE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15270 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -133.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B 0 REMARK 465 MSE B 1 REMARK 465 SER B 2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 176 CG CD OE1 NE2 REMARK 470 ARG B 103 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 112 CD CE NZ REMARK 470 LYS B 165 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 134 -89.79 -115.59 REMARK 500 LYS A 165 -131.68 56.10 REMARK 500 ASP A 166 43.52 -95.96 REMARK 500 ASN A 185 5.00 -157.26 REMARK 500 LYS B 112 30.39 -99.78 REMARK 500 SER B 134 -91.50 -114.17 REMARK 500 SER B 134 -92.88 -114.17 REMARK 500 ASN B 185 4.30 -156.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 203 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: JCSG-399287 RELATED DB: TARGETTRACK REMARK 999 REMARK 999 SEQUENCE REMARK 999 THIS CONSTRUCT WAS EXPRESSED WITH AN N-TERMINAL PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 4H17 A 1 196 UNP Q88LV1 Q88LV1_PSEPK 1 196 DBREF 4H17 B 1 196 UNP Q88LV1 Q88LV1_PSEPK 1 196 SEQADV 4H17 GLY A 0 UNP Q88LV1 EXPRESSION TAG SEQADV 4H17 GLY B 0 UNP Q88LV1 EXPRESSION TAG SEQRES 1 A 197 GLY MSE SER VAL PRO THR THR MSE PHE ARG LEU THR GLY SEQRES 2 A 197 ARG ASP TYR PRO PRO ALA LYS LEU SER HIS ALA SER LEU SEQRES 3 A 197 ILE ILE ILE ASP ALA GLN LYS GLU TYR LEU SER GLY PRO SEQRES 4 A 197 LEU LYS LEU SER GLY MSE ASP GLU ALA VAL ALA ASN ILE SEQRES 5 A 197 ALA ARG LEU LEU ASP ALA ALA ARG LYS SER GLY ARG PRO SEQRES 6 A 197 ILE ILE HIS VAL ARG HIS LEU GLY THR VAL GLY GLY ARG SEQRES 7 A 197 PHE ASP PRO GLN GLY PRO ALA GLY GLN PHE ILE PRO GLY SEQRES 8 A 197 LEU GLU PRO LEU GLU GLY GLU ILE VAL ILE GLU LYS ARG SEQRES 9 A 197 MSE PRO ASN ALA PHE LYS ASN THR LYS LEU HIS GLU THR SEQRES 10 A 197 LEU GLN GLU LEU GLY HIS LEU ASP LEU ILE VAL CYS GLY SEQRES 11 A 197 PHE MSE SER HIS SER SER VAL SER THR THR VAL ARG ARG SEQRES 12 A 197 ALA LYS ASP TYR GLY TYR ARG CYS THR LEU VAL GLU ASP SEQRES 13 A 197 ALA SER ALA THR ARG ASP LEU ALA PHE LYS ASP GLY VAL SEQRES 14 A 197 ILE PRO ALA ALA GLN ILE HIS GLN CYS GLU MSE ALA VAL SEQRES 15 A 197 MSE ALA ASP ASN PHE ALA CYS VAL ALA PRO THR ALA SER SEQRES 16 A 197 LEU ILE SEQRES 1 B 197 GLY MSE SER VAL PRO THR THR MSE PHE ARG LEU THR GLY SEQRES 2 B 197 ARG ASP TYR PRO PRO ALA LYS LEU SER HIS ALA SER LEU SEQRES 3 B 197 ILE ILE ILE ASP ALA GLN LYS GLU TYR LEU SER GLY PRO SEQRES 4 B 197 LEU LYS LEU SER GLY MSE ASP GLU ALA VAL ALA ASN ILE SEQRES 5 B 197 ALA ARG LEU LEU ASP ALA ALA ARG LYS SER GLY ARG PRO SEQRES 6 B 197 ILE ILE HIS VAL ARG HIS LEU GLY THR VAL GLY GLY ARG SEQRES 7 B 197 PHE ASP PRO GLN GLY PRO ALA GLY GLN PHE ILE PRO GLY SEQRES 8 B 197 LEU GLU PRO LEU GLU GLY GLU ILE VAL ILE GLU LYS ARG SEQRES 9 B 197 MSE PRO ASN ALA PHE LYS ASN THR LYS LEU HIS GLU THR SEQRES 10 B 197 LEU GLN GLU LEU GLY HIS LEU ASP LEU ILE VAL CYS GLY SEQRES 11 B 197 PHE MSE SER HIS SER SER VAL SER THR THR VAL ARG ARG SEQRES 12 B 197 ALA LYS ASP TYR GLY TYR ARG CYS THR LEU VAL GLU ASP SEQRES 13 B 197 ALA SER ALA THR ARG ASP LEU ALA PHE LYS ASP GLY VAL SEQRES 14 B 197 ILE PRO ALA ALA GLN ILE HIS GLN CYS GLU MSE ALA VAL SEQRES 15 B 197 MSE ALA ASP ASN PHE ALA CYS VAL ALA PRO THR ALA SER SEQRES 16 B 197 LEU ILE MODRES 4H17 MSE A 1 MET SELENOMETHIONINE MODRES 4H17 MSE A 7 MET SELENOMETHIONINE MODRES 4H17 MSE A 44 MET SELENOMETHIONINE MODRES 4H17 MSE A 104 MET SELENOMETHIONINE MODRES 4H17 MSE A 131 MET SELENOMETHIONINE MODRES 4H17 MSE A 179 MET SELENOMETHIONINE MODRES 4H17 MSE A 182 MET SELENOMETHIONINE MODRES 4H17 MSE B 7 MET SELENOMETHIONINE MODRES 4H17 MSE B 44 MET SELENOMETHIONINE MODRES 4H17 MSE B 104 MET SELENOMETHIONINE MODRES 4H17 MSE B 131 MET SELENOMETHIONINE MODRES 4H17 MSE B 179 MET SELENOMETHIONINE MODRES 4H17 MSE B 182 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 7 8 HET MSE A 44 8 HET MSE A 104 8 HET MSE A 131 8 HET MSE A 179 8 HET MSE A 182 8 HET MSE B 7 8 HET MSE B 44 8 HET MSE B 104 8 HET MSE B 131 8 HET MSE B 179 8 HET MSE B 182 8 HET SO4 A 201 5 HET SO4 A 202 5 HET SO4 A 203 5 HET SO4 A 204 5 HET EDO A 205 4 HET EDO A 206 4 HET SO4 B 201 5 HET SO4 B 202 5 HET EDO B 203 4 HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 13(C5 H11 N O2 SE) FORMUL 3 SO4 6(O4 S 2-) FORMUL 7 EDO 3(C2 H6 O2) FORMUL 12 HOH *442(H2 O) HELIX 1 1 THR A 6 THR A 11 1 6 HELIX 2 2 LYS A 19 SER A 21 5 3 HELIX 3 3 GLN A 31 LYS A 40 5 10 HELIX 4 4 GLY A 43 SER A 61 1 19 HELIX 5 5 GLY A 82 GLN A 86 5 5 HELIX 6 6 LYS A 112 GLY A 121 1 10 HELIX 7 7 SER A 134 TYR A 146 1 13 HELIX 8 8 PRO A 170 PHE A 186 1 17 HELIX 9 9 PRO A 191 LEU A 195 5 5 HELIX 10 10 THR B 6 THR B 11 1 6 HELIX 11 11 LYS B 19 ALA B 23 5 5 HELIX 12 12 GLN B 31 SER B 36 5 6 HELIX 13 13 GLY B 43 SER B 61 1 19 HELIX 14 14 GLY B 82 GLN B 86 5 5 HELIX 15 15 LYS B 112 GLY B 121 1 10 HELIX 16 16 SER B 134 TYR B 146 1 13 HELIX 17 17 PRO B 170 PHE B 186 1 17 HELIX 18 18 PRO B 191 LEU B 195 5 5 SHEET 1 A 6 ILE A 98 LYS A 102 0 SHEET 2 A 6 ILE A 65 HIS A 70 1 N HIS A 67 O ILE A 98 SHEET 3 A 6 ALA A 23 ILE A 28 1 N ILE A 27 O ILE A 66 SHEET 4 A 6 ASP A 124 PHE A 130 1 O ILE A 126 N ILE A 26 SHEET 5 A 6 ARG A 149 ALA A 158 1 O THR A 151 N LEU A 125 SHEET 6 A 6 CYS A 188 ALA A 190 1 O CYS A 188 N LEU A 152 SHEET 1 B 2 LEU A 162 PHE A 164 0 SHEET 2 B 2 GLY A 167 ILE A 169 -1 O ILE A 169 N LEU A 162 SHEET 1 C 6 ILE B 98 LYS B 102 0 SHEET 2 C 6 ILE B 65 HIS B 70 1 N HIS B 67 O ILE B 98 SHEET 3 C 6 SER B 24 ILE B 28 1 N LEU B 25 O ILE B 66 SHEET 4 C 6 ASP B 124 PHE B 130 1 O ILE B 126 N ILE B 26 SHEET 5 C 6 ARG B 149 ALA B 158 1 O ARG B 149 N LEU B 125 SHEET 6 C 6 CYS B 188 ALA B 190 1 O CYS B 188 N LEU B 152 SHEET 1 D 2 LEU B 162 PHE B 164 0 SHEET 2 D 2 GLY B 167 ILE B 169 -1 O ILE B 169 N LEU B 162 LINK C GLY A 0 N MSE A 1 1555 1555 1.33 LINK C MSE A 1 N SER A 2 1555 1555 1.34 LINK C THR A 6 N MSE A 7 1555 1555 1.32 LINK C MSE A 7 N PHE A 8 1555 1555 1.33 LINK C GLY A 43 N MSE A 44 1555 1555 1.33 LINK C MSE A 44 N ASP A 45 1555 1555 1.34 LINK C ARG A 103 N MSE A 104 1555 1555 1.33 LINK C MSE A 104 N PRO A 105 1555 1555 1.35 LINK C PHE A 130 N MSE A 131 1555 1555 1.35 LINK C MSE A 131 N SER A 132 1555 1555 1.32 LINK C GLU A 178 N MSE A 179 1555 1555 1.34 LINK C MSE A 179 N ALA A 180 1555 1555 1.33 LINK C VAL A 181 N MSE A 182 1555 1555 1.33 LINK C MSE A 182 N ALA A 183 1555 1555 1.34 LINK C THR B 6 N MSE B 7 1555 1555 1.33 LINK C MSE B 7 N PHE B 8 1555 1555 1.34 LINK C GLY B 43 N MSE B 44 1555 1555 1.32 LINK C MSE B 44 N ASP B 45 1555 1555 1.34 LINK C ARG B 103 N MSE B 104 1555 1555 1.33 LINK C MSE B 104 N PRO B 105 1555 1555 1.33 LINK C PHE B 130 N MSE B 131 1555 1555 1.33 LINK C MSE B 131 N SER B 132 1555 1555 1.34 LINK C GLU B 178 N MSE B 179 1555 1555 1.33 LINK C MSE B 179 N ALA B 180 1555 1555 1.33 LINK C VAL B 181 N MSE B 182 1555 1555 1.34 LINK C MSE B 182 N ALA B 183 1555 1555 1.34 CISPEP 1 PHE A 130 MSE A 131 0 -16.51 CISPEP 2 PHE B 130 MSE B 131 0 -15.01 SITE 1 AC1 8 ASP A 29 TYR A 34 HIS A 70 MSE A 131 SITE 2 AC1 8 SER A 134 SER A 135 HOH A 315 MSE B 7 SITE 1 AC2 10 ASN A 106 PHE A 108 LYS A 109 ARG A 142 SITE 2 AC2 10 TYR A 146 HOH A 322 HOH A 411 HOH A 490 SITE 3 AC2 10 HOH A 517 ARG B 142 SITE 1 AC3 9 HIS A 70 LEU A 71 GLY A 72 PHE A 78 SITE 2 AC3 9 LYS A 102 ARG A 103 HOH A 329 HOH A 381 SITE 3 AC3 9 ARG B 13 SITE 1 AC4 8 GLY A 0 THR A 11 ARG A 13 HOH A 379 SITE 2 AC4 8 HOH A 488 HOH A 506 THR B 73 ARG B 77 SITE 1 AC5 8 THR A 73 GLY A 76 ARG A 77 ILE A 98 SITE 2 AC5 8 VAL A 99 HOH A 313 HOH A 329 LEU B 10 SITE 1 AC6 4 SER A 42 ALA A 158 THR A 159 HOH A 373 SITE 1 AC7 10 ARG A 142 ASN B 106 PHE B 108 LYS B 109 SITE 2 AC7 10 ARG B 142 TYR B 146 HOH B 315 HOH B 343 SITE 3 AC7 10 HOH B 357 HOH B 402 SITE 1 AC8 8 TYR B 34 MSE B 131 SER B 134 SER B 135 SITE 2 AC8 8 HOH B 323 HOH B 412 HOH B 424 HOH B 452 SITE 1 AC9 5 SER B 42 ALA B 158 THR B 159 HOH B 367 SITE 2 AC9 5 HOH B 418 CRYST1 49.169 49.348 156.593 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020338 0.000000 0.000000 0.00000 SCALE2 0.000000 0.020264 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006386 0.00000