HEADER HYDROLASE 16-SEP-12 4H46 TITLE CRYSTAL STRUCTURE OF AMP COMPLEXES OF NEM MODIFIED PORCINE LIVER TITLE 2 FRUCTOSE-1,6-BISPHOSPHATASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: FRUCTOSE-1,6-BISPHOSPHATASE 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: FBPASE 1, D-FRUCTOSE-1,6-BISPHOSPHATE 1-PHOSPHOHYDROLASE 1; COMPND 5 EC: 3.1.3.11; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SUS SCROFA; SOURCE 3 ORGANISM_COMMON: PIG; SOURCE 4 ORGANISM_TAXID: 9823; SOURCE 5 GENE: FBP, FBP1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: DF657; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET24B KEYWDS ALLOSTERIC ENZYMES, FBPASE, NEM MODIFICATION, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.GAO,R.B.HONZATKO REVDAT 3 20-SEP-23 4H46 1 HETSYN REVDAT 2 29-JUL-20 4H46 1 COMPND REMARK HETNAM LINK REVDAT 2 2 1 SITE REVDAT 1 18-SEP-13 4H46 0 JRNL AUTH Y.GAO,R.B.HONZATKO JRNL TITL FLUORESCENT 2',3'-O-(2,4,6-TRINITROPHENYL) (TNP)-AMP IS AN JRNL TITL 2 ACTIVE SITE INHIBITOR FOR PORCINE LIVER JRNL TITL 3 FRUCTOSE-1,6-BISPHOSPHATASE RATHER THAN ALLOSTERIC INHIBITOR JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0066 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.30 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 3 NUMBER OF REFLECTIONS : 13147 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 694 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 981 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.27 REMARK 3 BIN R VALUE (WORKING SET) : 0.2410 REMARK 3 BIN FREE R VALUE SET COUNT : 40 REMARK 3 BIN FREE R VALUE : 0.3710 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2439 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 54 REMARK 3 SOLVENT ATOMS : 101 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01000 REMARK 3 B22 (A**2) : 0.02000 REMARK 3 B33 (A**2) : -0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.486 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.294 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.940 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.896 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2534 ; 0.022 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3433 ; 2.052 ; 2.011 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 317 ; 6.359 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 96 ;38.527 ;24.375 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 445 ;18.438 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;25.738 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 396 ; 0.136 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1838 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1582 ; 1.053 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2552 ; 1.956 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 952 ; 2.636 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 881 ; 4.007 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4H46 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-SEP-12. REMARK 100 THE DEPOSITION ID IS D_1000074996. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-NOV-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : D*TREK 9.7L REMARK 200 DATA SCALING SOFTWARE : D*TREK 9.7L REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13863 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 42.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.6 REMARK 200 DATA REDUNDANCY : 3.730 REMARK 200 R MERGE (I) : 0.11100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.62 REMARK 200 R MERGE FOR SHELL (I) : 0.34400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2F3D REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.77 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG3350, T-BUTYL ALCOHOL, 1,2 REMARK 280 -ETHANEDIOL, PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 31.28050 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 39.33650 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 82.46400 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 31.28050 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 39.33650 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 82.46400 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 31.28050 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 39.33650 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 82.46400 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 31.28050 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 39.33650 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 82.46400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 22970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 43670 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -152.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -62.56100 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 -62.56100 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 1 REMARK 465 ASP A 2 REMARK 465 GLN A 3 REMARK 465 ALA A 4 REMARK 465 ALA A 5 REMARK 465 PHE A 6 REMARK 465 ASP A 7 REMARK 465 THR A 8 REMARK 465 THR A 63 REMARK 465 ASN A 64 REMARK 465 VAL A 65 REMARK 465 THR A 66 REMARK 465 GLY A 67 REMARK 465 ASP A 68 REMARK 465 GLN A 69 REMARK 465 VAL A 70 REMARK 465 ALA A 336 REMARK 465 LYS A 337 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 38 CB CYS A 38 SG -0.107 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 89 17.48 56.22 REMARK 500 GLU A 280 -62.09 -123.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 61 SER A 62 149.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 97 OE2 REMARK 620 2 ASP A 118 OD2 72.7 REMARK 620 3 ASP A 121 OD2 149.5 100.5 REMARK 620 4 GLU A 280 OE2 106.7 103.8 103.8 REMARK 620 5 PO4 A 403 O2 60.8 68.9 88.9 166.5 REMARK 620 6 PO4 A 403 O1 68.9 136.8 102.5 105.5 75.5 REMARK 620 N 1 2 3 4 5 DBREF 4H46 A 1 337 UNP P00636 F16P1_PIG 2 338 SEQRES 1 A 337 THR ASP GLN ALA ALA PHE ASP THR ASN ILE VAL THR LEU SEQRES 2 A 337 THR ARG PHE VAL MET GLU GLU GLY ARG LYS ALA ARG GLY SEQRES 3 A 337 THR GLY GLU MET THR GLN LEU LEU ASN SER LEU CYS THR SEQRES 4 A 337 ALA VAL LYS ALA ILE SER THR ALA VAL ARG LYS ALA GLY SEQRES 5 A 337 ILE ALA HIS LEU TYR GLY ILE ALA GLY SER THR ASN VAL SEQRES 6 A 337 THR GLY ASP GLN VAL LYS LYS LEU ASP VAL LEU SER ASN SEQRES 7 A 337 ASP LEU VAL ILE ASN VAL LEU LYS SER SER PHE ALA THR SEQRES 8 A 337 CYS VAL LEU VAL SER GLU GLU ASP LYS ASN ALA ILE ILE SEQRES 9 A 337 VAL GLU PRO GLU LYS ARG GLY LYS TYR VAL VAL CYS PHE SEQRES 10 A 337 ASP PRO LEU ASP GLY SER SER ASN ILE ASP CYS LEU VAL SEQRES 11 A 337 SER ILE GLY THR ILE PHE GLY ILE TYR ARG LYS ASN SER SEQRES 12 A 337 THR ASP GLU PRO SER GLU LYS ASP ALA LEU GLN PRO GLY SEQRES 13 A 337 ARG ASN LEU VAL ALA ALA GLY TYR ALA LEU TYR GLY SER SEQRES 14 A 337 ALA THR MET LEU VAL LEU ALA MET VAL ASN GLY VAL ASN SEQRES 15 A 337 CYS PHE MET LEU ASP PRO ALA ILE GLY GLU PHE ILE LEU SEQRES 16 A 337 VAL ASP ARG ASP VAL LYS ILE LYS LYS LYS GLY SER ILE SEQRES 17 A 337 TYR SER ILE ASN GLU GLY TYR ALA LYS GLU PHE ASP PRO SEQRES 18 A 337 ALA ILE THR GLU TYR ILE GLN ARG LYS LYS PHE PRO PRO SEQRES 19 A 337 ASP ASN SER ALA PRO TYR GLY ALA ARG TYR VAL GLY SER SEQRES 20 A 337 MET VAL ALA ASP VAL HIS ARG THR LEU VAL TYR GLY GLY SEQRES 21 A 337 ILE PHE MET TYR PRO ALA ASN LYS LYS SER PRO LYS GLY SEQRES 22 A 337 LYS LEU ARG LEU LEU TYR GLU CYS ASN PRO MET ALA TYR SEQRES 23 A 337 VAL MET GLU LYS ALA GLY GLY LEU ALA THR THR GLY LYS SEQRES 24 A 337 GLU ALA VAL LEU ASP ILE VAL PRO THR ASP ILE HIS GLN SEQRES 25 A 337 ARG ALA PRO ILE ILE LEU GLY SER PRO GLU ASP VAL THR SEQRES 26 A 337 GLU LEU LEU GLU ILE TYR GLN LYS HIS ALA ALA LYS HET F6P A 401 16 HET MG A 402 1 HET PO4 A 403 5 HET AMP A 404 23 HET NEN A 405 9 HETNAM F6P 6-O-PHOSPHONO-BETA-D-FRUCTOFURANOSE HETNAM MG MAGNESIUM ION HETNAM PO4 PHOSPHATE ION HETNAM AMP ADENOSINE MONOPHOSPHATE HETNAM NEN 1-ETHYL-PYRROLIDINE-2,5-DIONE HETSYN F6P FRUCTOSE-6-PHOSPHATE; 6-O-PHOSPHONO-BETA-D-FRUCTOSE; 6- HETSYN 2 F6P O-PHOSPHONO-D-FRUCTOSE; 6-O-PHOSPHONO-FRUCTOSE FORMUL 2 F6P C6 H13 O9 P FORMUL 3 MG MG 2+ FORMUL 4 PO4 O4 P 3- FORMUL 5 AMP C10 H14 N5 O7 P FORMUL 6 NEN C6 H9 N O2 FORMUL 7 HOH *101(H2 O) HELIX 1 1 THR A 12 ALA A 24 1 13 HELIX 2 2 GLY A 28 ARG A 49 1 22 HELIX 3 3 GLY A 52 TYR A 57 1 6 HELIX 4 4 LYS A 72 SER A 88 1 17 HELIX 5 5 GLU A 106 ARG A 110 5 5 HELIX 6 6 GLY A 122 ILE A 126 5 5 HELIX 7 7 SER A 148 LEU A 153 5 6 HELIX 8 8 PRO A 155 LEU A 159 5 5 HELIX 9 9 ASN A 212 ALA A 216 5 5 HELIX 10 10 ASP A 220 PHE A 232 1 13 HELIX 11 11 SER A 247 GLY A 259 1 13 HELIX 12 12 GLU A 280 ALA A 291 1 12 HELIX 13 13 ALA A 301 ILE A 305 5 5 HELIX 14 14 SER A 320 HIS A 334 1 15 SHEET 1 A 8 ILE A 103 ILE A 104 0 SHEET 2 A 8 THR A 91 SER A 96 -1 N LEU A 94 O ILE A 103 SHEET 3 A 8 TYR A 113 ASP A 121 1 O PHE A 117 N VAL A 95 SHEET 4 A 8 ILE A 132 ARG A 140 -1 O TYR A 139 N VAL A 114 SHEET 5 A 8 ALA A 161 TYR A 167 -1 O TYR A 167 N ILE A 132 SHEET 6 A 8 THR A 171 MET A 177 -1 O ALA A 176 N ALA A 162 SHEET 7 A 8 GLY A 180 ASP A 187 -1 O LEU A 186 N THR A 171 SHEET 8 A 8 GLU A 192 ASP A 197 -1 O VAL A 196 N CYS A 183 SHEET 1 B 5 GLY A 241 ALA A 242 0 SHEET 2 B 5 ILE A 208 SER A 210 1 N TYR A 209 O GLY A 241 SHEET 3 B 5 ILE A 261 TYR A 264 1 O MET A 263 N SER A 210 SHEET 4 B 5 ILE A 316 GLY A 319 -1 O ILE A 316 N TYR A 264 SHEET 5 B 5 LEU A 294 THR A 296 -1 N LEU A 294 O GLY A 319 LINK SG CYS A 128 C1 NEN A 405 1555 1555 1.96 LINK OE2 GLU A 97 MG MG A 402 1555 1555 2.76 LINK OD2 ASP A 118 MG MG A 402 1555 1555 2.19 LINK OD2 ASP A 121 MG MG A 402 1555 1555 2.35 LINK OE2 GLU A 280 MG MG A 402 1555 1555 1.83 LINK MG MG A 402 O2 PO4 A 403 1555 1555 1.81 LINK MG MG A 402 O1 PO4 A 403 1555 1555 2.23 CRYST1 62.561 78.673 164.928 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015984 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012711 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006063 0.00000