HEADER TRANSFERASE/TRANSFERASE INHIBITOR 18-SEP-12 4H58 TITLE BRAF IN COMPLEX WITH COMPOUND 3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE/THREONINE-PROTEIN KINASE B-RAF; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: PROTEIN KINASE DOMAIN (UNP RESIDUES 448-722); COMPND 5 SYNONYM: PROTO-ONCOGENE B-RAF, P94, V-RAF MURINE SARCOMA VIRAL COMPND 6 ONCOGENE HOMOLOG B1; COMPND 7 EC: 2.7.11.1; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BRAF, BRAF1, RAFB1; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS PROTEIN KINASE, STRUCTURE BASED DRUG DISCOVERY, TRANSFERASE- KEYWDS 2 TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.VASBINDER,B.AQUILA,M.AUGUSTIN,T.CHUENG,D.COOK,L.DREW,B.FAUBER, AUTHOR 2 S.GLOSSOP,R.GODIN,M.GRONDINE,E.HENNESSY,J.JOHANNES,S.LEE,P.LYNE, AUTHOR 3 M.MOERTL,C.OMER,S.PALAKURTHI,T.PONTZ,J.READ,L.SHA,M.SHEN, AUTHOR 4 S.STEINBACHER,H.WANG,A.WU,M.YE,B.BAGAL REVDAT 4 20-SEP-23 4H58 1 REMARK REVDAT 3 15-NOV-17 4H58 1 REMARK REVDAT 2 27-MAR-13 4H58 1 JRNL REVDAT 1 27-FEB-13 4H58 0 JRNL AUTH M.M.VASBINDER,B.AQUILA,M.AUGUSTIN,H.CHEN,T.CHEUNG,D.COOK, JRNL AUTH 2 L.DREW,B.P.FAUBER,S.GLOSSOP,M.GRONDINE,E.HENNESSY, JRNL AUTH 3 J.JOHANNES,S.LEE,P.LYNE,M.MORTL,C.OMER,S.PALAKURTHI,T.PONTZ, JRNL AUTH 4 J.READ,L.SHA,M.SHEN,S.STEINBACHER,H.WANG,A.WU,M.YE JRNL TITL DISCOVERY AND OPTIMIZATION OF A NOVEL SERIES OF POTENT JRNL TITL 2 MUTANT B-RAF(V600E) SELECTIVE KINASE INHIBITORS. JRNL REF J.MED.CHEM. V. 56 1996 2013 JRNL REFN ISSN 0022-2623 JRNL PMID 23398453 JRNL DOI 10.1021/JM301658D REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.25 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 26825 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.224 REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.272 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1412 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.18 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1816 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3590 REMARK 3 BIN FREE R VALUE SET COUNT : 96 REMARK 3 BIN FREE R VALUE : 0.3440 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6367 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 15 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 68.49 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.52000 REMARK 3 B22 (A**2) : -1.52000 REMARK 3 B33 (A**2) : 3.04000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.983 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.422 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.310 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 18.585 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.916 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.870 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6639 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 6124 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8965 ; 1.266 ; 1.977 REMARK 3 BOND ANGLES OTHERS (DEGREES): 14264 ; 0.789 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 795 ; 7.012 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 286 ;37.695 ;23.811 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1199 ;18.487 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 40 ;17.688 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 980 ; 0.067 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7210 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1336 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1593 ; 0.219 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 6485 ; 0.187 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3253 ; 0.184 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 3724 ; 0.087 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 158 ; 0.144 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 21 ; 0.218 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 98 ; 0.205 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 2 ; 0.102 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 5188 ; 1.160 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1623 ; 0.101 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6430 ; 1.326 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3196 ; 1.297 ; 4.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2535 ; 2.016 ; 6.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4H58 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-SEP-12. REMARK 100 THE DEPOSITION ID IS D_1000075034. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-DEC-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9999 REMARK 200 MONOCHROMATOR : LN2 COOLED FIXED-EXIT SI(111) REMARK 200 OPTICS : DYNAMICALLY BENDABLE MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28238 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100 REMARK 200 RESOLUTION RANGE LOW (A) : 47.250 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.1 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.14000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.17 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : 0.79500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1UWH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 71.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SALT, PH 6.5, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 102.37000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 102.37000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 76.47500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 102.37000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 38.23750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 102.37000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 114.71250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 102.37000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 114.71250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 102.37000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 38.23750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 102.37000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 102.37000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 76.47500 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 102.37000 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 102.37000 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 76.47500 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 102.37000 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 114.71250 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 102.37000 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 38.23750 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 102.37000 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 38.23750 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 102.37000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 114.71250 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 102.37000 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 102.37000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 76.47500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 801 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 601 REMARK 465 ARG A 602 REMARK 465 TRP A 603 REMARK 465 SER A 604 REMARK 465 GLY A 605 REMARK 465 SER A 606 REMARK 465 HIS A 607 REMARK 465 GLN A 608 REMARK 465 PHE A 609 REMARK 465 GLU A 610 REMARK 465 GLN A 611 REMARK 465 LEU A 612 REMARK 465 VAL B 599 REMARK 465 LYS B 600 REMARK 465 SER B 601 REMARK 465 ARG B 602 REMARK 465 TRP B 603 REMARK 465 SER B 604 REMARK 465 GLY B 605 REMARK 465 SER B 606 REMARK 465 HIS B 607 REMARK 465 GLN B 608 REMARK 465 PHE B 609 REMARK 465 GLU B 610 REMARK 465 GLN B 611 REMARK 465 ASP C 447 REMARK 465 ASP C 628 REMARK 465 LYS C 629 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 452 152.47 -44.18 REMARK 500 ILE A 462 -43.23 -140.25 REMARK 500 SER A 466 -55.50 -26.08 REMARK 500 TRP A 475 103.05 -174.13 REMARK 500 PRO A 491 -3.27 -45.69 REMARK 500 GLU A 532 98.53 -63.48 REMARK 500 SER A 534 -174.68 73.88 REMARK 500 THR A 545 113.30 -37.72 REMARK 500 LYS A 569 3.42 -68.52 REMARK 500 ASP A 575 45.83 -157.81 REMARK 500 LYS A 577 147.80 170.91 REMARK 500 ASP A 586 7.35 46.37 REMARK 500 ASP A 593 108.26 -39.31 REMARK 500 ALA A 597 149.90 166.09 REMARK 500 ARG A 625 -73.36 -71.44 REMARK 500 MET A 626 79.39 95.28 REMARK 500 ASP A 628 -24.82 153.05 REMARK 500 ASN A 630 37.09 -148.13 REMARK 500 SER A 719 43.50 -93.47 REMARK 500 SER B 466 -95.17 13.81 REMARK 500 PHE B 467 55.28 -116.11 REMARK 500 ALA B 488 128.05 -34.18 REMARK 500 ARG B 505 4.97 -68.04 REMARK 500 HIS B 509 143.20 -171.78 REMARK 500 LEU B 524 81.85 56.46 REMARK 500 ILE B 542 -83.33 -94.29 REMARK 500 MET B 549 -45.96 -26.03 REMARK 500 ARG B 574 -17.44 87.58 REMARK 500 ASP B 575 48.88 -148.86 REMARK 500 LEU B 583 78.89 -110.26 REMARK 500 LEU B 583 78.89 -105.76 REMARK 500 LEU B 587 -60.01 -143.98 REMARK 500 MET B 626 91.08 72.73 REMARK 500 ASP B 628 -133.59 -161.92 REMARK 500 LEU B 677 7.91 -69.17 REMARK 500 PRO C 452 172.52 -55.77 REMARK 500 ASN C 485 70.55 -100.31 REMARK 500 THR C 487 -63.59 -91.28 REMARK 500 ALA C 496 35.88 -80.02 REMARK 500 PHE C 497 -62.13 -142.38 REMARK 500 LYS C 498 -13.34 -49.24 REMARK 500 GLU C 544 17.23 53.09 REMARK 500 ASP C 575 34.46 -166.02 REMARK 500 LEU C 587 -53.55 -145.92 REMARK 500 SER C 604 -164.23 -79.70 REMARK 500 HIS C 607 59.14 -111.29 REMARK 500 GLN C 608 -36.33 -39.54 REMARK 500 GLN C 611 -87.75 -74.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 MET A 626 GLN A 627 145.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 10Z A 801 DBREF 4H58 A 447 721 UNP P15056 BRAF_HUMAN 448 722 DBREF 4H58 B 447 721 UNP P15056 BRAF_HUMAN 448 722 DBREF 4H58 C 447 721 UNP P15056 BRAF_HUMAN 448 722 SEQRES 1 A 275 ASP ASP TRP GLU ILE PRO ASP GLY GLN ILE THR VAL GLY SEQRES 2 A 275 GLN ARG ILE GLY SER GLY SER PHE GLY THR VAL TYR LYS SEQRES 3 A 275 GLY LYS TRP HIS GLY ASP VAL ALA VAL LYS MET LEU ASN SEQRES 4 A 275 VAL THR ALA PRO THR PRO GLN GLN LEU GLN ALA PHE LYS SEQRES 5 A 275 ASN GLU VAL GLY VAL LEU ARG LYS THR ARG HIS VAL ASN SEQRES 6 A 275 ILE LEU LEU PHE MET GLY TYR SER THR LYS PRO GLN LEU SEQRES 7 A 275 ALA ILE VAL THR GLN TRP CYS GLU GLY SER SER LEU TYR SEQRES 8 A 275 HIS HIS LEU HIS ILE ILE GLU THR LYS PHE GLU MET ILE SEQRES 9 A 275 LYS LEU ILE ASP ILE ALA ARG GLN THR ALA GLN GLY MET SEQRES 10 A 275 ASP TYR LEU HIS ALA LYS SER ILE ILE HIS ARG ASP LEU SEQRES 11 A 275 LYS SER ASN ASN ILE PHE LEU HIS GLU ASP LEU THR VAL SEQRES 12 A 275 LYS ILE GLY ASP PHE GLY LEU ALA THR VAL LYS SER ARG SEQRES 13 A 275 TRP SER GLY SER HIS GLN PHE GLU GLN LEU SER GLY SER SEQRES 14 A 275 ILE LEU TRP MET ALA PRO GLU VAL ILE ARG MET GLN ASP SEQRES 15 A 275 LYS ASN PRO TYR SER PHE GLN SER ASP VAL TYR ALA PHE SEQRES 16 A 275 GLY ILE VAL LEU TYR GLU LEU MET THR GLY GLN LEU PRO SEQRES 17 A 275 TYR SER ASN ILE ASN ASN ARG ASP GLN ILE ILE PHE MET SEQRES 18 A 275 VAL GLY ARG GLY TYR LEU SER PRO ASP LEU SER LYS VAL SEQRES 19 A 275 ARG SER ASN CYS PRO LYS ALA MET LYS ARG LEU MET ALA SEQRES 20 A 275 GLU CYS LEU LYS LYS LYS ARG ASP GLU ARG PRO LEU PHE SEQRES 21 A 275 PRO GLN ILE LEU ALA SER ILE GLU LEU LEU ALA ARG SER SEQRES 22 A 275 LEU PRO SEQRES 1 B 275 ASP ASP TRP GLU ILE PRO ASP GLY GLN ILE THR VAL GLY SEQRES 2 B 275 GLN ARG ILE GLY SER GLY SER PHE GLY THR VAL TYR LYS SEQRES 3 B 275 GLY LYS TRP HIS GLY ASP VAL ALA VAL LYS MET LEU ASN SEQRES 4 B 275 VAL THR ALA PRO THR PRO GLN GLN LEU GLN ALA PHE LYS SEQRES 5 B 275 ASN GLU VAL GLY VAL LEU ARG LYS THR ARG HIS VAL ASN SEQRES 6 B 275 ILE LEU LEU PHE MET GLY TYR SER THR LYS PRO GLN LEU SEQRES 7 B 275 ALA ILE VAL THR GLN TRP CYS GLU GLY SER SER LEU TYR SEQRES 8 B 275 HIS HIS LEU HIS ILE ILE GLU THR LYS PHE GLU MET ILE SEQRES 9 B 275 LYS LEU ILE ASP ILE ALA ARG GLN THR ALA GLN GLY MET SEQRES 10 B 275 ASP TYR LEU HIS ALA LYS SER ILE ILE HIS ARG ASP LEU SEQRES 11 B 275 LYS SER ASN ASN ILE PHE LEU HIS GLU ASP LEU THR VAL SEQRES 12 B 275 LYS ILE GLY ASP PHE GLY LEU ALA THR VAL LYS SER ARG SEQRES 13 B 275 TRP SER GLY SER HIS GLN PHE GLU GLN LEU SER GLY SER SEQRES 14 B 275 ILE LEU TRP MET ALA PRO GLU VAL ILE ARG MET GLN ASP SEQRES 15 B 275 LYS ASN PRO TYR SER PHE GLN SER ASP VAL TYR ALA PHE SEQRES 16 B 275 GLY ILE VAL LEU TYR GLU LEU MET THR GLY GLN LEU PRO SEQRES 17 B 275 TYR SER ASN ILE ASN ASN ARG ASP GLN ILE ILE PHE MET SEQRES 18 B 275 VAL GLY ARG GLY TYR LEU SER PRO ASP LEU SER LYS VAL SEQRES 19 B 275 ARG SER ASN CYS PRO LYS ALA MET LYS ARG LEU MET ALA SEQRES 20 B 275 GLU CYS LEU LYS LYS LYS ARG ASP GLU ARG PRO LEU PHE SEQRES 21 B 275 PRO GLN ILE LEU ALA SER ILE GLU LEU LEU ALA ARG SER SEQRES 22 B 275 LEU PRO SEQRES 1 C 275 ASP ASP TRP GLU ILE PRO ASP GLY GLN ILE THR VAL GLY SEQRES 2 C 275 GLN ARG ILE GLY SER GLY SER PHE GLY THR VAL TYR LYS SEQRES 3 C 275 GLY LYS TRP HIS GLY ASP VAL ALA VAL LYS MET LEU ASN SEQRES 4 C 275 VAL THR ALA PRO THR PRO GLN GLN LEU GLN ALA PHE LYS SEQRES 5 C 275 ASN GLU VAL GLY VAL LEU ARG LYS THR ARG HIS VAL ASN SEQRES 6 C 275 ILE LEU LEU PHE MET GLY TYR SER THR LYS PRO GLN LEU SEQRES 7 C 275 ALA ILE VAL THR GLN TRP CYS GLU GLY SER SER LEU TYR SEQRES 8 C 275 HIS HIS LEU HIS ILE ILE GLU THR LYS PHE GLU MET ILE SEQRES 9 C 275 LYS LEU ILE ASP ILE ALA ARG GLN THR ALA GLN GLY MET SEQRES 10 C 275 ASP TYR LEU HIS ALA LYS SER ILE ILE HIS ARG ASP LEU SEQRES 11 C 275 LYS SER ASN ASN ILE PHE LEU HIS GLU ASP LEU THR VAL SEQRES 12 C 275 LYS ILE GLY ASP PHE GLY LEU ALA THR VAL LYS SER ARG SEQRES 13 C 275 TRP SER GLY SER HIS GLN PHE GLU GLN LEU SER GLY SER SEQRES 14 C 275 ILE LEU TRP MET ALA PRO GLU VAL ILE ARG MET GLN ASP SEQRES 15 C 275 LYS ASN PRO TYR SER PHE GLN SER ASP VAL TYR ALA PHE SEQRES 16 C 275 GLY ILE VAL LEU TYR GLU LEU MET THR GLY GLN LEU PRO SEQRES 17 C 275 TYR SER ASN ILE ASN ASN ARG ASP GLN ILE ILE PHE MET SEQRES 18 C 275 VAL GLY ARG GLY TYR LEU SER PRO ASP LEU SER LYS VAL SEQRES 19 C 275 ARG SER ASN CYS PRO LYS ALA MET LYS ARG LEU MET ALA SEQRES 20 C 275 GLU CYS LEU LYS LYS LYS ARG ASP GLU ARG PRO LEU PHE SEQRES 21 C 275 PRO GLN ILE LEU ALA SER ILE GLU LEU LEU ALA ARG SER SEQRES 22 C 275 LEU PRO HET 10Z A 801 29 HET CL C 801 1 HETNAM 10Z N-(4-{[(2-METHOXYETHYL)AMINO]METHYL}PHENYL)-6-(PYRIDIN- HETNAM 2 10Z 4-YL)QUINAZOLIN-2-AMINE HETNAM CL CHLORIDE ION FORMUL 4 10Z C23 H23 N5 O FORMUL 5 CL CL 1- FORMUL 6 HOH *15(H2 O) HELIX 1 1 GLN A 492 ARG A 505 1 14 HELIX 2 2 SER A 535 ILE A 542 1 8 HELIX 3 3 GLU A 548 LYS A 569 1 22 HELIX 4 4 LYS A 577 ASN A 579 5 3 HELIX 5 5 GLU A 585 LEU A 587 5 3 HELIX 6 6 ALA A 620 MET A 626 1 7 HELIX 7 7 SER A 633 GLY A 651 1 19 HELIX 8 8 ASN A 660 GLY A 671 1 12 HELIX 9 9 ASP A 676 VAL A 680 5 5 HELIX 10 10 PRO A 685 LYS A 697 1 13 HELIX 11 11 LYS A 699 ARG A 703 5 5 HELIX 12 12 LEU A 705 SER A 719 1 15 HELIX 13 13 THR B 490 ARG B 505 1 16 HELIX 14 14 SER B 535 ILE B 542 1 8 HELIX 15 15 GLU B 548 LYS B 569 1 22 HELIX 16 16 LYS B 577 ASN B 579 5 3 HELIX 17 17 GLU B 585 LEU B 587 5 3 HELIX 18 18 ALA B 620 MET B 626 1 7 HELIX 19 19 SER B 633 GLY B 651 1 19 HELIX 20 20 ASN B 660 ARG B 670 1 11 HELIX 21 21 PRO B 685 LEU B 696 1 12 HELIX 22 22 LYS B 699 ARG B 703 5 5 HELIX 23 23 LEU B 705 SER B 719 1 15 HELIX 24 24 THR C 490 ARG C 505 1 16 HELIX 25 25 LEU C 536 ILE C 542 1 7 HELIX 26 26 GLU C 548 LYS C 569 1 22 HELIX 27 27 PHE C 594 THR C 598 5 5 HELIX 28 28 ALA C 620 ARG C 625 1 6 HELIX 29 29 SER C 633 GLY C 651 1 19 HELIX 30 30 ASN C 660 GLY C 671 1 12 HELIX 31 31 ASP C 676 VAL C 680 5 5 HELIX 32 32 PRO C 685 LEU C 696 1 12 HELIX 33 33 LYS C 699 ARG C 703 5 5 HELIX 34 34 LEU C 705 ARG C 718 1 14 SHEET 1 A 5 THR A 457 GLY A 463 0 SHEET 2 A 5 THR A 469 LYS A 474 -1 O LYS A 472 N GLY A 459 SHEET 3 A 5 ASP A 478 LEU A 484 -1 O MET A 483 N THR A 469 SHEET 4 A 5 LEU A 524 GLN A 529 -1 O ILE A 526 N LYS A 482 SHEET 5 A 5 PHE A 515 SER A 519 -1 N MET A 516 O VAL A 527 SHEET 1 B 2 ILE A 571 ILE A 572 0 SHEET 2 B 2 THR A 598 VAL A 599 -1 O THR A 598 N ILE A 572 SHEET 1 C 2 ILE A 581 HIS A 584 0 SHEET 2 C 2 THR A 588 ILE A 591 -1 O THR A 588 N HIS A 584 SHEET 1 D 5 ARG B 461 GLY B 465 0 SHEET 2 D 5 GLY B 468 LYS B 474 -1 O VAL B 470 N GLY B 463 SHEET 3 D 5 ASP B 478 MET B 483 -1 O MET B 483 N THR B 469 SHEET 4 D 5 ALA B 525 GLN B 529 -1 O ILE B 526 N LYS B 482 SHEET 5 D 5 PHE B 515 SER B 519 -1 N GLY B 517 O VAL B 527 SHEET 1 E 2 ILE B 581 HIS B 584 0 SHEET 2 E 2 THR B 588 ILE B 591 -1 O LYS B 590 N PHE B 582 SHEET 1 F 5 THR C 457 GLY C 463 0 SHEET 2 F 5 THR C 469 LYS C 474 -1 O LYS C 472 N GLN C 460 SHEET 3 F 5 ASP C 478 MET C 483 -1 O MET C 483 N THR C 469 SHEET 4 F 5 ALA C 525 GLN C 529 -1 O ILE C 526 N LYS C 482 SHEET 5 F 5 PHE C 515 SER C 519 -1 N GLY C 517 O VAL C 527 SHEET 1 G 3 GLY C 533 SER C 535 0 SHEET 2 G 3 ILE C 581 HIS C 584 -1 O LEU C 583 N SER C 534 SHEET 3 G 3 THR C 588 ILE C 591 -1 O LYS C 590 N PHE C 582 CISPEP 1 LYS A 521 PRO A 522 0 -9.00 CISPEP 2 LYS B 521 PRO B 522 0 1.88 CISPEP 3 LYS C 521 PRO C 522 0 -11.87 SITE 1 AC1 7 VAL A 470 LEU A 513 THR A 528 TRP A 530 SITE 2 AC1 7 CYS A 531 HIS A 538 PHE A 582 CRYST1 204.740 204.740 152.950 90.00 90.00 90.00 I 41 2 2 48 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004884 0.000000 0.000000 0.00000 SCALE2 0.000000 0.004884 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006538 0.00000