HEADER TRANSFERASE 26-SEP-12 4HAC TITLE CRYSTAL STRUCTURE OF THE MEVALONATE KINASE FROM AN ARCHAEON TITLE 2 METHANOSARCINA MAZEI COMPND MOL_ID: 1; COMPND 2 MOLECULE: MEVALONATE KINASE; COMPND 3 CHAIN: A; COMPND 4 EC: 2.7.1.36; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: MEVALONATE KINASE; COMPND 8 CHAIN: B; COMPND 9 EC: 2.7.1.36; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOSARCINA MAZEI; SOURCE 3 ORGANISM_TAXID: 192952; SOURCE 4 STRAIN: ATCC BAA-159 / DSM 3647 / GOE1 / GO1 / JCM 11833 / OCM 88; SOURCE 5 GENE: MM_1762, MVK; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: METHANOSARCINA MAZEI; SOURCE 13 ORGANISM_TAXID: 192952; SOURCE 14 STRAIN: ATCC BAA-159 / DSM 3647 / GOE1 / GO1 / JCM 11833 / OCM 88; SOURCE 15 GENE: MM_1762, MVK; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS GHMP, ATP BINDING, PHOSPHORYLATION, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR N.ZHUANG,K.H.LEE REVDAT 3 15-NOV-17 4HAC 1 REMARK REVDAT 2 19-DEC-12 4HAC 1 JRNL REVDAT 1 12-DEC-12 4HAC 0 JRNL AUTH N.ZHUANG,K.H.SEO,C.CHEN,J.ZHOU,S.W.KIM,K.H.LEE JRNL TITL CRYSTALLIZATION AND PRELIMINARY X-RAY DIFFRACTION ANALYSIS JRNL TITL 2 OF MEVALONATE KINASE FROM METHANOSARCINA MAZEI. JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 68 1560 2012 JRNL REFN ESSN 1744-3091 JRNL PMID 23192048 JRNL DOI 10.1107/S1744309112047070 REMARK 2 REMARK 2 RESOLUTION. 1.92 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.92 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.93 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 47017 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.214 REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.263 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2370 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.92 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.97 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3123 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.03 REMARK 3 BIN R VALUE (WORKING SET) : 0.3370 REMARK 3 BIN FREE R VALUE SET COUNT : 165 REMARK 3 BIN FREE R VALUE : 0.3760 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4537 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 166 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.58 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.176 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.167 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.128 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.964 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.935 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4604 ; 0.023 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6235 ; 1.950 ; 1.984 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 620 ; 6.597 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 162 ;36.944 ;24.383 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 791 ;18.061 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;17.410 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 748 ; 0.153 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3376 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3052 ; 1.200 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4898 ; 2.052 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1552 ; 3.385 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1336 ; 5.432 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -10 A 301 REMARK 3 ORIGIN FOR THE GROUP (A): -1.0392 -15.8588 20.5236 REMARK 3 T TENSOR REMARK 3 T11: 0.0778 T22: 0.1467 REMARK 3 T33: 0.0850 T12: 0.0002 REMARK 3 T13: -0.0070 T23: 0.0424 REMARK 3 L TENSOR REMARK 3 L11: 2.8448 L22: 0.0347 REMARK 3 L33: 0.1556 L12: -0.0734 REMARK 3 L13: 0.6414 L23: 0.0011 REMARK 3 S TENSOR REMARK 3 S11: 0.1031 S12: -0.1588 S13: -0.0841 REMARK 3 S21: -0.0334 S22: -0.0535 S23: -0.0290 REMARK 3 S31: 0.0056 S32: -0.0509 S33: -0.0496 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B -6 B 301 REMARK 3 RESIDUE RANGE : B 601 B 601 REMARK 3 RESIDUE RANGE : B 701 B 811 REMARK 3 ORIGIN FOR THE GROUP (A): -48.1263 -17.5274 12.4104 REMARK 3 T TENSOR REMARK 3 T11: 0.1315 T22: 0.0818 REMARK 3 T33: 0.0898 T12: 0.0336 REMARK 3 T13: -0.0492 T23: -0.0319 REMARK 3 L TENSOR REMARK 3 L11: 1.1567 L22: 0.1220 REMARK 3 L33: 0.2600 L12: 0.1489 REMARK 3 L13: 0.2072 L23: -0.1218 REMARK 3 S TENSOR REMARK 3 S11: 0.0911 S12: 0.0594 S13: -0.1744 REMARK 3 S21: -0.0031 S22: -0.0307 S23: 0.0052 REMARK 3 S31: 0.0179 S32: 0.0428 S33: -0.0604 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 4HAC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-SEP-12. REMARK 100 THE DEPOSITION ID IS D_1000075218. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-JUL-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : OTHER REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97947,0.97954,0.97179 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47072 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.910 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.09300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.91 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.94 REMARK 200 COMPLETENESS FOR SHELL (%) : 72.2 REMARK 200 DATA REDUNDANCY IN SHELL : 5.90 REMARK 200 R MERGE FOR SHELL (I) : 0.70900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE, RESOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, MGCL2, PH 5.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 48.64750 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 67.67950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 48.64750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 67.67950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS THE SAME AS ASYM. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2390 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25730 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -36.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 MET B -19 REMARK 465 GLY B -18 REMARK 465 SER B -17 REMARK 465 SER B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 SER B -9 REMARK 465 SER B -8 REMARK 465 GLY B -7 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A -1 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O SER B 90 N LEU B 92 1.95 REMARK 500 O GLU B 15 O HOH B 701 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ALA B 6 CA ALA B 6 CB 0.130 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 32 NE - CZ - NH1 ANGL. DEV. = 5.9 DEGREES REMARK 500 ARG A 32 NE - CZ - NH2 ANGL. DEV. = -7.5 DEGREES REMARK 500 ARG B 32 NE - CZ - NH2 ANGL. DEV. = -4.3 DEGREES REMARK 500 LEU B 106 CB - CG - CD1 ANGL. DEV. = 10.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 16 -26.85 69.46 REMARK 500 ASP A 55 102.74 -161.11 REMARK 500 ARG B -3 24.77 -144.98 REMARK 500 HIS B 16 -18.87 73.72 REMARK 500 GLU B 30 56.15 -90.09 REMARK 500 HIS B 59 60.04 -117.42 REMARK 500 VAL B 88 109.47 -51.72 REMARK 500 SER B 90 129.66 136.58 REMARK 500 ARG B 153 34.45 71.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 601 DBREF 4HAC A 1 301 UNP Q8PW39 Q8PW39_METMA 1 301 DBREF 4HAC B 1 301 UNP Q8PW39 Q8PW39_METMA 1 301 SEQADV 4HAC MET A -19 UNP Q8PW39 EXPRESSION TAG SEQADV 4HAC GLY A -18 UNP Q8PW39 EXPRESSION TAG SEQADV 4HAC SER A -17 UNP Q8PW39 EXPRESSION TAG SEQADV 4HAC SER A -16 UNP Q8PW39 EXPRESSION TAG SEQADV 4HAC HIS A -15 UNP Q8PW39 EXPRESSION TAG SEQADV 4HAC HIS A -14 UNP Q8PW39 EXPRESSION TAG SEQADV 4HAC HIS A -13 UNP Q8PW39 EXPRESSION TAG SEQADV 4HAC HIS A -12 UNP Q8PW39 EXPRESSION TAG SEQADV 4HAC HIS A -11 UNP Q8PW39 EXPRESSION TAG SEQADV 4HAC HIS A -10 UNP Q8PW39 EXPRESSION TAG SEQADV 4HAC SER A -9 UNP Q8PW39 EXPRESSION TAG SEQADV 4HAC SER A -8 UNP Q8PW39 EXPRESSION TAG SEQADV 4HAC GLY A -7 UNP Q8PW39 EXPRESSION TAG SEQADV 4HAC LEU A -6 UNP Q8PW39 EXPRESSION TAG SEQADV 4HAC VAL A -5 UNP Q8PW39 EXPRESSION TAG SEQADV 4HAC PRO A -4 UNP Q8PW39 EXPRESSION TAG SEQADV 4HAC ARG A -3 UNP Q8PW39 EXPRESSION TAG SEQADV 4HAC GLY A -2 UNP Q8PW39 EXPRESSION TAG SEQADV 4HAC SER A -1 UNP Q8PW39 EXPRESSION TAG SEQADV 4HAC HIS A 0 UNP Q8PW39 EXPRESSION TAG SEQADV 4HAC MET B -19 UNP Q8PW39 EXPRESSION TAG SEQADV 4HAC GLY B -18 UNP Q8PW39 EXPRESSION TAG SEQADV 4HAC SER B -17 UNP Q8PW39 EXPRESSION TAG SEQADV 4HAC SER B -16 UNP Q8PW39 EXPRESSION TAG SEQADV 4HAC HIS B -15 UNP Q8PW39 EXPRESSION TAG SEQADV 4HAC HIS B -14 UNP Q8PW39 EXPRESSION TAG SEQADV 4HAC HIS B -13 UNP Q8PW39 EXPRESSION TAG SEQADV 4HAC HIS B -12 UNP Q8PW39 EXPRESSION TAG SEQADV 4HAC HIS B -11 UNP Q8PW39 EXPRESSION TAG SEQADV 4HAC HIS B -10 UNP Q8PW39 EXPRESSION TAG SEQADV 4HAC SER B -9 UNP Q8PW39 EXPRESSION TAG SEQADV 4HAC SER B -8 UNP Q8PW39 EXPRESSION TAG SEQADV 4HAC GLY B -7 UNP Q8PW39 EXPRESSION TAG SEQADV 4HAC LEU B -6 UNP Q8PW39 EXPRESSION TAG SEQADV 4HAC VAL B -5 UNP Q8PW39 EXPRESSION TAG SEQADV 4HAC PRO B -4 UNP Q8PW39 EXPRESSION TAG SEQADV 4HAC ARG B -3 UNP Q8PW39 EXPRESSION TAG SEQADV 4HAC GLY B -2 UNP Q8PW39 EXPRESSION TAG SEQADV 4HAC SER B -1 UNP Q8PW39 EXPRESSION TAG SEQADV 4HAC HIS B 0 UNP Q8PW39 EXPRESSION TAG SEQRES 1 A 321 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 321 LEU VAL PRO ARG GLY SER HIS MET VAL SER CYS SER ALA SEQRES 3 A 321 PRO GLY LYS ILE TYR LEU PHE GLY GLU HIS ALA VAL VAL SEQRES 4 A 321 TYR GLY GLU THR ALA ILE ALA CYS ALA VAL GLU LEU ARG SEQRES 5 A 321 THR ARG VAL ARG ALA GLU LEU ASN ASP SER ILE THR ILE SEQRES 6 A 321 GLN SER GLN ILE GLY ARG THR GLY LEU ASP PHE GLU LYS SEQRES 7 A 321 HIS PRO TYR VAL SER ALA VAL ILE GLU LYS MSE ARG LYS SEQRES 8 A 321 SER ILE PRO ILE ASN GLY VAL PHE LEU THR VAL ASP SER SEQRES 9 A 321 ASP ILE PRO VAL GLY SER GLY LEU GLY SER SER ALA ALA SEQRES 10 A 321 VAL THR ILE ALA SER ILE GLY ALA LEU ASN GLU LEU PHE SEQRES 11 A 321 GLY PHE GLY LEU SER LEU GLN GLU ILE ALA LYS LEU GLY SEQRES 12 A 321 HIS GLU ILE GLU ILE LYS VAL GLN GLY ALA ALA SER PRO SEQRES 13 A 321 THR ASP THR TYR VAL SER THR PHE GLY GLY VAL VAL THR SEQRES 14 A 321 ILE PRO GLU ARG ARG LYS LEU LYS THR PRO ASP CYS GLY SEQRES 15 A 321 ILE VAL ILE GLY ASP THR GLY VAL PHE SER SER THR LYS SEQRES 16 A 321 GLU LEU VAL ALA ASN VAL ARG GLN LEU ARG GLU SER TYR SEQRES 17 A 321 PRO ASP LEU ILE GLU PRO LEU MSE THR SER ILE GLY LYS SEQRES 18 A 321 ILE SER ARG ILE GLY GLU GLN LEU VAL LEU SER GLY ASP SEQRES 19 A 321 TYR ALA SER ILE GLY ARG LEU MSE ASN VAL ASN GLN GLY SEQRES 20 A 321 LEU LEU ASP ALA LEU GLY VAL ASN ILE LEU GLU LEU SER SEQRES 21 A 321 GLN LEU ILE TYR SER ALA ARG ALA ALA GLY ALA PHE GLY SEQRES 22 A 321 ALA LYS ILE THR GLY ALA GLY GLY GLY GLY CYS MSE VAL SEQRES 23 A 321 ALA LEU THR ALA PRO GLU LYS CYS ASN GLN VAL ALA GLU SEQRES 24 A 321 ALA VAL ALA GLY ALA GLY GLY LYS VAL THR ILE THR LYS SEQRES 25 A 321 PRO THR GLU GLN GLY LEU LYS VAL ASP SEQRES 1 B 321 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 321 LEU VAL PRO ARG GLY SER HIS MSE VAL SER CYS SER ALA SEQRES 3 B 321 PRO GLY LYS ILE TYR LEU PHE GLY GLU HIS ALA VAL VAL SEQRES 4 B 321 TYR GLY GLU THR ALA ILE ALA CYS ALA VAL GLU LEU ARG SEQRES 5 B 321 THR ARG VAL ARG ALA GLU LEU ASN ASP SER ILE THR ILE SEQRES 6 B 321 GLN SER GLN ILE GLY ARG THR GLY LEU ASP PHE GLU LYS SEQRES 7 B 321 HIS PRO TYR VAL SER ALA VAL ILE GLU LYS MSE ARG LYS SEQRES 8 B 321 SER ILE PRO ILE ASN GLY VAL PHE LEU THR VAL ASP SER SEQRES 9 B 321 ASP ILE PRO VAL GLY SER GLY LEU GLY SER SER ALA ALA SEQRES 10 B 321 VAL THR ILE ALA SER ILE GLY ALA LEU ASN GLU LEU PHE SEQRES 11 B 321 GLY PHE GLY LEU SER LEU GLN GLU ILE ALA LYS LEU GLY SEQRES 12 B 321 HIS GLU ILE GLU ILE LYS VAL GLN GLY ALA ALA SER PRO SEQRES 13 B 321 THR ASP THR TYR VAL SER THR PHE GLY GLY VAL VAL THR SEQRES 14 B 321 ILE PRO GLU ARG ARG LYS LEU LYS THR PRO ASP CYS GLY SEQRES 15 B 321 ILE VAL ILE GLY ASP THR GLY VAL PHE SER SER THR LYS SEQRES 16 B 321 GLU LEU VAL ALA ASN VAL ARG GLN LEU ARG GLU SER TYR SEQRES 17 B 321 PRO ASP LEU ILE GLU PRO LEU MSE THR SER ILE GLY LYS SEQRES 18 B 321 ILE SER ARG ILE GLY GLU GLN LEU VAL LEU SER GLY ASP SEQRES 19 B 321 TYR ALA SER ILE GLY ARG LEU MSE ASN VAL ASN GLN GLY SEQRES 20 B 321 LEU LEU ASP ALA LEU GLY VAL ASN ILE LEU GLU LEU SER SEQRES 21 B 321 GLN LEU ILE TYR SER ALA ARG ALA ALA GLY ALA PHE GLY SEQRES 22 B 321 ALA LYS ILE THR GLY ALA GLY GLY GLY GLY CYS MSE VAL SEQRES 23 B 321 ALA LEU THR ALA PRO GLU LYS CYS ASN GLN VAL ALA GLU SEQRES 24 B 321 ALA VAL ALA GLY ALA GLY GLY LYS VAL THR ILE THR LYS SEQRES 25 B 321 PRO THR GLU GLN GLY LEU LYS VAL ASP MODRES 4HAC MSE A 69 MET SELENOMETHIONINE MODRES 4HAC MSE A 196 MET SELENOMETHIONINE MODRES 4HAC MSE A 222 MET SELENOMETHIONINE MODRES 4HAC MSE A 265 MET SELENOMETHIONINE MODRES 4HAC MSE B 1 MET SELENOMETHIONINE MODRES 4HAC MSE B 69 MET SELENOMETHIONINE MODRES 4HAC MSE B 196 MET SELENOMETHIONINE MODRES 4HAC MSE B 222 MET SELENOMETHIONINE MODRES 4HAC MSE B 265 MET SELENOMETHIONINE HET MSE A 69 8 HET MSE A 196 8 HET MSE A 222 8 HET MSE A 265 8 HET MSE B 1 8 HET MSE B 69 8 HET MSE B 196 8 HET MSE B 222 8 HET MSE B 265 8 HET MG A 601 1 HET MG B 601 1 HETNAM MSE SELENOMETHIONINE HETNAM MG MAGNESIUM ION FORMUL 1 MSE 9(C5 H11 N O2 SE) FORMUL 3 MG 2(MG 2+) FORMUL 5 HOH *166(H2 O) HELIX 1 1 ALA A 17 GLY A 21 5 5 HELIX 2 2 HIS A 59 ARG A 70 1 12 HELIX 3 3 GLY A 93 PHE A 110 1 18 HELIX 4 4 SER A 115 GLY A 132 1 18 HELIX 5 5 PRO A 136 GLY A 145 1 10 HELIX 6 6 SER A 173 TYR A 188 1 16 HELIX 7 7 TYR A 188 GLY A 213 1 26 HELIX 8 8 ASP A 214 GLY A 233 1 20 HELIX 9 9 ILE A 236 ALA A 249 1 14 HELIX 10 10 LYS A 273 ALA A 284 1 12 HELIX 11 11 ALA B 17 GLY B 21 5 5 HELIX 12 12 HIS B 59 ILE B 73 1 15 HELIX 13 13 GLY B 93 PHE B 110 1 18 HELIX 14 14 SER B 115 GLY B 132 1 18 HELIX 15 15 PRO B 136 GLY B 145 1 10 HELIX 16 16 SER B 173 TYR B 188 1 16 HELIX 17 17 TYR B 188 SER B 212 1 25 HELIX 18 18 ASP B 214 GLY B 233 1 20 HELIX 19 19 ILE B 236 ALA B 249 1 14 HELIX 20 20 ALA B 270 GLU B 272 5 3 HELIX 21 21 LYS B 273 ALA B 284 1 12 SHEET 1 A 6 GLY A 50 THR A 52 0 SHEET 2 A 6 ILE A 43 SER A 47 -1 N ILE A 45 O THR A 52 SHEET 3 A 6 VAL A 78 SER A 84 1 O LEU A 80 N THR A 44 SHEET 4 A 6 ALA A 24 LEU A 39 -1 N ARG A 34 O ASP A 83 SHEET 5 A 6 VAL A 147 ILE A 150 -1 O VAL A 148 N ALA A 26 SHEET 6 A 6 LYS A 155 LEU A 156 -1 O LEU A 156 N VAL A 147 SHEET 1 B 6 GLY A 50 THR A 52 0 SHEET 2 B 6 ILE A 43 SER A 47 -1 N ILE A 45 O THR A 52 SHEET 3 B 6 VAL A 78 SER A 84 1 O LEU A 80 N THR A 44 SHEET 4 B 6 ALA A 24 LEU A 39 -1 N ARG A 34 O ASP A 83 SHEET 5 B 6 VAL A 2 PHE A 13 -1 N ILE A 10 O CYS A 27 SHEET 6 B 6 LYS A 299 VAL A 300 -1 O LYS A 299 N SER A 5 SHEET 1 C 4 GLY A 253 ILE A 256 0 SHEET 2 C 4 CYS A 264 THR A 269 -1 O VAL A 266 N LYS A 255 SHEET 3 C 4 GLY A 162 ASP A 167 -1 N VAL A 164 O ALA A 267 SHEET 4 C 4 LYS A 287 THR A 291 -1 O THR A 291 N ILE A 163 SHEET 1 D 6 GLY B 50 THR B 52 0 SHEET 2 D 6 ILE B 43 SER B 47 -1 N ILE B 45 O THR B 52 SHEET 3 D 6 VAL B 78 SER B 84 1 O LEU B 80 N GLN B 46 SHEET 4 D 6 ALA B 24 GLU B 38 -1 N ARG B 34 O ASP B 83 SHEET 5 D 6 VAL B 147 ILE B 150 -1 O VAL B 148 N ALA B 26 SHEET 6 D 6 LYS B 155 LEU B 156 -1 O LEU B 156 N VAL B 147 SHEET 1 E 6 GLY B 50 THR B 52 0 SHEET 2 E 6 ILE B 43 SER B 47 -1 N ILE B 45 O THR B 52 SHEET 3 E 6 VAL B 78 SER B 84 1 O LEU B 80 N GLN B 46 SHEET 4 E 6 ALA B 24 GLU B 38 -1 N ARG B 34 O ASP B 83 SHEET 5 E 6 VAL B 2 PHE B 13 -1 N VAL B 2 O ALA B 37 SHEET 6 E 6 LYS B 299 VAL B 300 -1 O LYS B 299 N SER B 5 SHEET 1 F 4 GLY B 253 ILE B 256 0 SHEET 2 F 4 CYS B 264 THR B 269 -1 O VAL B 266 N LYS B 255 SHEET 3 F 4 GLY B 162 ASP B 167 -1 N VAL B 164 O ALA B 267 SHEET 4 F 4 LYS B 287 THR B 291 -1 O THR B 291 N ILE B 163 LINK C LYS A 68 N MSE A 69 1555 1555 1.33 LINK C MSE A 69 N ARG A 70 1555 1555 1.32 LINK C LEU A 195 N MSE A 196 1555 1555 1.34 LINK C MSE A 196 N THR A 197 1555 1555 1.34 LINK C LEU A 221 N MSE A 222 1555 1555 1.31 LINK C MSE A 222 N ASN A 223 1555 1555 1.36 LINK C CYS A 264 N MSE A 265 1555 1555 1.33 LINK C MSE A 265 N VAL A 266 1555 1555 1.33 LINK C HIS B 0 N MSE B 1 1555 1555 1.33 LINK C MSE B 1 N VAL B 2 1555 1555 1.33 LINK C LYS B 68 N MSE B 69 1555 1555 1.33 LINK C MSE B 69 N ARG B 70 1555 1555 1.33 LINK C LEU B 195 N MSE B 196 1555 1555 1.33 LINK C MSE B 196 N THR B 197 1555 1555 1.34 LINK C LEU B 221 N MSE B 222 1555 1555 1.31 LINK C MSE B 222 N ASN B 223 1555 1555 1.31 LINK C CYS B 264 N MSE B 265 1555 1555 1.33 LINK C MSE B 265 N VAL B 266 1555 1555 1.34 CISPEP 1 ILE A 150 PRO A 151 0 3.60 CISPEP 2 ILE B 150 PRO B 151 0 -2.73 SITE 1 AC1 4 HIS A 59 PRO A 60 TYR A 61 VAL A 62 SITE 1 AC2 5 HIS B 59 PRO B 60 TYR B 61 VAL B 62 SITE 2 AC2 5 HOH B 738 CRYST1 97.295 135.359 45.867 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010278 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007388 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021802 0.00000