HEADER ELECTRON TRANSPORT 04-OCT-12 4HEQ TITLE THE CRYSTAL STRUCTURE OF FLAVODOXIN FROM DESULFOVIBRIO GIGAS COMPND MOL_ID: 1; COMPND 2 MOLECULE: FLAVODOXIN; COMPND 3 CHAIN: A, B SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DESULFOVIBRIO GIGAS; SOURCE 3 ORGANISM_TAXID: 879 KEYWDS ELECTRON TRANSFER, CYTOPLASMA, ELECTRON TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR Y.C.HSIEH,C.J.CHEN REVDAT 2 20-MAR-24 4HEQ 1 REMARK REVDAT 1 30-JAN-13 4HEQ 0 JRNL AUTH Y.C.HSIEH,T.S.CHIA,H.K.FUN,C.J.CHEN JRNL TITL CRYSTAL STRUCTURE OF DIMERIC FLAVODOXIN FROM DESULFOVIBRIO JRNL TITL 2 GIGAS SUGGESTS A POTENTIAL BINDING REGION FOR THE JRNL TITL 3 ELECTRON-TRANSFERRING PARTNER JRNL REF INT J MOL SCI V. 14 1667 2013 JRNL REFN ESSN 1422-0067 JRNL PMID 23322018 JRNL DOI 10.3390/IJMS14011667 REMARK 2 REMARK 2 RESOLUTION. 1.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 54753 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2921 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.33 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3750 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2200 REMARK 3 BIN FREE R VALUE SET COUNT : 190 REMARK 3 BIN FREE R VALUE : 0.2650 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2152 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 62 REMARK 3 SOLVENT ATOMS : 346 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 12.73 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.06000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : -0.06000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.057 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.060 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.036 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.829 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2248 ; 0.026 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3066 ; 2.418 ; 2.011 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 288 ; 5.857 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 90 ;35.845 ;26.444 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 356 ;11.579 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;17.785 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 358 ; 0.159 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1662 ; 0.017 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4HEQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-OCT-12. REMARK 100 THE DEPOSITION ID IS D_1000075373. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL13B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 71508 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.210 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.21 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.25 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 34.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% (V/V) PEG 550, 50MM CALCIUM REMARK 280 CHLORIDE DIHYDRATE, 100MM BIS-TRIS BUFFER (PH 6.5), VAPOR REMARK 280 DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.09900 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 38.12300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.18300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 38.12300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.09900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 30.18300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 MET B 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CE LYS B 24 O HOH B 451 2.02 REMARK 500 O HOH B 394 O HOH B 481 2.08 REMARK 500 OE2 GLU B 64 O HOH B 475 2.10 REMARK 500 O HOH A 459 O HOH B 475 2.10 REMARK 500 O HOH A 390 O HOH A 463 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 390 O HOH A 447 4446 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TRP A 60 CG TRP A 60 CD1 0.095 REMARK 500 TRP A 60 CE2 TRP A 60 CD2 0.106 REMARK 500 GLU A 64 CD GLU A 64 OE1 0.075 REMARK 500 GLU A 69 CD GLU A 69 OE2 0.095 REMARK 500 TRP B 60 CG TRP B 60 CD1 0.099 REMARK 500 TRP B 60 NE1 TRP B 60 CE2 -0.093 REMARK 500 TRP B 60 CE2 TRP B 60 CD2 0.097 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 63 CB - CG - OD2 ANGL. DEV. = -6.5 DEGREES REMARK 500 ASP A 79 CB - CG - OD2 ANGL. DEV. = 6.6 DEGREES REMARK 500 ASP A 95 CB - CG - OD1 ANGL. DEV. = 6.3 DEGREES REMARK 500 ASP A 95 CB - CG - OD2 ANGL. DEV. = -8.9 DEGREES REMARK 500 ASP A 106 CB - CG - OD2 ANGL. DEV. = -7.1 DEGREES REMARK 500 LEU B 26 CB - CG - CD2 ANGL. DEV. = 11.0 DEGREES REMARK 500 MET B 31 CG - SD - CE ANGL. DEV. = -22.1 DEGREES REMARK 500 TRP B 60 CD1 - NE1 - CE2 ANGL. DEV. = 7.7 DEGREES REMARK 500 ASP B 95 CB - CG - OD2 ANGL. DEV. = -6.0 DEGREES REMARK 500 THR B 99 N - CA - C ANGL. DEV. = 20.2 DEGREES REMARK 500 TYR B 100 N - CA - CB ANGL. DEV. = -14.1 DEGREES REMARK 500 LYS B 111 CD - CE - NZ ANGL. DEV. = 22.5 DEGREES REMARK 500 GLU B 114 OE1 - CD - OE2 ANGL. DEV. = -8.3 DEGREES REMARK 500 ARG B 140 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 60 -152.98 -121.32 REMARK 500 GLU A 64 -149.20 -133.35 REMARK 500 TRP B 60 -167.81 -128.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 SER B 10 11.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMN A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMN B 201 DBREF 4HEQ A 1 146 UNP Q7BPR1 Q7BPR1_DESGI 1 146 DBREF 4HEQ B 1 146 UNP Q7BPR1 Q7BPR1_DESGI 1 146 SEQRES 1 A 146 MET PRO LYS ALA LEU ILE VAL TYR GLY SER THR THR GLY SEQRES 2 A 146 ASN THR GLU GLY VAL ALA GLU ALA ILE ALA LYS THR LEU SEQRES 3 A 146 ASN SER GLU GLY MET GLU THR THR VAL VAL ASN VAL ALA SEQRES 4 A 146 ASP VAL THR ALA PRO GLY LEU ALA GLU GLY TYR ASP VAL SEQRES 5 A 146 VAL LEU LEU GLY CYS SER THR TRP GLY ASP ASP GLU ILE SEQRES 6 A 146 GLU LEU GLN GLU ASP PHE VAL PRO LEU TYR GLU ASP LEU SEQRES 7 A 146 ASP ARG ALA GLY LEU LYS ASP LYS LYS VAL GLY VAL PHE SEQRES 8 A 146 GLY CYS GLY ASP SER SER TYR THR TYR PHE CYS GLY ALA SEQRES 9 A 146 VAL ASP VAL ILE GLU LYS LYS ALA GLU GLU LEU GLY ALA SEQRES 10 A 146 THR LEU VAL ALA SER SER LEU LYS ILE ASP GLY GLU PRO SEQRES 11 A 146 ASP SER ALA GLU VAL LEU ASP TRP ALA ARG GLU VAL LEU SEQRES 12 A 146 ALA ARG VAL SEQRES 1 B 146 MET PRO LYS ALA LEU ILE VAL TYR GLY SER THR THR GLY SEQRES 2 B 146 ASN THR GLU GLY VAL ALA GLU ALA ILE ALA LYS THR LEU SEQRES 3 B 146 ASN SER GLU GLY MET GLU THR THR VAL VAL ASN VAL ALA SEQRES 4 B 146 ASP VAL THR ALA PRO GLY LEU ALA GLU GLY TYR ASP VAL SEQRES 5 B 146 VAL LEU LEU GLY CYS SER THR TRP GLY ASP ASP GLU ILE SEQRES 6 B 146 GLU LEU GLN GLU ASP PHE VAL PRO LEU TYR GLU ASP LEU SEQRES 7 B 146 ASP ARG ALA GLY LEU LYS ASP LYS LYS VAL GLY VAL PHE SEQRES 8 B 146 GLY CYS GLY ASP SER SER TYR THR TYR PHE CYS GLY ALA SEQRES 9 B 146 VAL ASP VAL ILE GLU LYS LYS ALA GLU GLU LEU GLY ALA SEQRES 10 B 146 THR LEU VAL ALA SER SER LEU LYS ILE ASP GLY GLU PRO SEQRES 11 B 146 ASP SER ALA GLU VAL LEU ASP TRP ALA ARG GLU VAL LEU SEQRES 12 B 146 ALA ARG VAL HET FMN A 201 31 HET FMN B 201 31 HETNAM FMN FLAVIN MONONUCLEOTIDE HETSYN FMN RIBOFLAVIN MONOPHOSPHATE FORMUL 3 FMN 2(C17 H21 N4 O9 P) FORMUL 5 HOH *346(H2 O) HELIX 1 1 GLY A 13 GLU A 29 1 17 HELIX 2 2 ALA A 39 VAL A 41 5 3 HELIX 3 3 ASP A 70 ASP A 77 1 8 HELIX 4 4 LEU A 78 ALA A 81 5 4 HELIX 5 5 CYS A 102 LEU A 115 1 14 HELIX 6 6 ASP A 131 VAL A 146 1 16 HELIX 7 7 GLY B 13 GLU B 29 1 17 HELIX 8 8 ALA B 39 VAL B 41 5 3 HELIX 9 9 PHE B 71 ASP B 77 1 7 HELIX 10 10 LEU B 78 ALA B 81 5 4 HELIX 11 11 CYS B 102 LEU B 115 1 14 HELIX 12 12 ASP B 131 VAL B 146 1 16 SHEET 1 A 5 GLU A 32 ASN A 37 0 SHEET 2 A 5 LYS A 3 GLY A 9 1 N ALA A 4 O THR A 34 SHEET 3 A 5 VAL A 52 CYS A 57 1 O LEU A 54 N LEU A 5 SHEET 4 A 5 LYS A 87 GLY A 94 1 O GLY A 89 N LEU A 55 SHEET 5 A 5 THR A 118 LEU A 119 1 O THR A 118 N VAL A 88 SHEET 1 B 5 GLU A 32 ASN A 37 0 SHEET 2 B 5 LYS A 3 GLY A 9 1 N ALA A 4 O THR A 34 SHEET 3 B 5 VAL A 52 CYS A 57 1 O LEU A 54 N LEU A 5 SHEET 4 B 5 LYS A 87 GLY A 94 1 O GLY A 89 N LEU A 55 SHEET 5 B 5 LEU A 124 ASP A 127 1 O ILE A 126 N GLY A 92 SHEET 1 C 2 THR A 59 TRP A 60 0 SHEET 2 C 2 GLU A 66 LEU A 67 -1 O GLU A 66 N TRP A 60 SHEET 1 D 5 GLU B 32 ASN B 37 0 SHEET 2 D 5 LYS B 3 GLY B 9 1 N ILE B 6 O THR B 34 SHEET 3 D 5 VAL B 52 CYS B 57 1 O GLY B 56 N VAL B 7 SHEET 4 D 5 LYS B 87 GLY B 94 1 O PHE B 91 N LEU B 55 SHEET 5 D 5 THR B 118 LEU B 119 1 O THR B 118 N VAL B 88 SHEET 1 E 5 GLU B 32 ASN B 37 0 SHEET 2 E 5 LYS B 3 GLY B 9 1 N ILE B 6 O THR B 34 SHEET 3 E 5 VAL B 52 CYS B 57 1 O GLY B 56 N VAL B 7 SHEET 4 E 5 LYS B 87 GLY B 94 1 O PHE B 91 N LEU B 55 SHEET 5 E 5 LEU B 124 ASP B 127 1 O ILE B 126 N GLY B 92 SHEET 1 F 2 THR B 59 TRP B 60 0 SHEET 2 F 2 GLU B 66 LEU B 67 -1 O GLU B 66 N TRP B 60 SITE 1 AC1 21 SER A 10 THR A 11 THR A 12 GLY A 13 SITE 2 AC1 21 ASN A 14 THR A 15 SER A 58 THR A 59 SITE 3 AC1 21 TRP A 60 GLY A 61 CYS A 93 GLY A 94 SITE 4 AC1 21 ASP A 95 TYR A 98 TYR A 100 PHE A 101 SITE 5 AC1 21 CYS A 102 HOH A 302 HOH A 314 HOH A 434 SITE 6 AC1 21 HOH A 464 SITE 1 AC2 23 SER B 10 THR B 11 THR B 12 GLY B 13 SITE 2 AC2 23 ASN B 14 THR B 15 VAL B 35 SER B 58 SITE 3 AC2 23 THR B 59 TRP B 60 GLY B 61 CYS B 93 SITE 4 AC2 23 GLY B 94 ASP B 95 TYR B 98 TYR B 100 SITE 5 AC2 23 PHE B 101 CYS B 102 HOH B 316 HOH B 344 SITE 6 AC2 23 HOH B 379 HOH B 427 HOH B 482 CRYST1 50.198 60.366 76.246 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019921 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016566 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013115 0.00000