HEADER OXIDOREDUCTASE 05-OCT-12 4HFN TITLE X-RAY CRYSTAL STRUCTURE OF A TERNARY COMPLEX OF DOUBLE BOND REDUCTASE TITLE 2 FROM NICOTIANA TABACUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALLYL ALCOHOL DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.3.1.74; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NICOTIANA TABACUM; SOURCE 3 ORGANISM_COMMON: AMERICAN TOBACCO,TOBACCO; SOURCE 4 ORGANISM_TAXID: 4097; SOURCE 5 GENE: NTADH; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21B KEYWDS ROSSMANN FOLD, TWISTED B-BARREL, ALKENE REDUCTION, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR H.S.TOOGOOD,N.S.SCRUTTON REVDAT 3 20-SEP-23 4HFN 1 REMARK SEQADV REVDAT 2 18-APR-18 4HFN 1 JRNL REVDAT 1 30-JAN-13 4HFN 0 JRNL AUTH D.J.MANSELL,H.S.TOOGOOD,J.WALLER,J.M.HUGHES,C.W.LEVY, JRNL AUTH 2 J.M.GARDINER,N.S.SCRUTTON JRNL TITL BIOCATALYTIC ASYMMETRIC ALKENE REDUCTION: CRYSTAL STRUCTURE JRNL TITL 2 AND CHARACTERIZATION OF A DOUBLE BOND REDUCTASE JRNL TITL 3 FROMNICOTIANA TABACUM. JRNL REF ACS CATAL V. 3 370 2013 JRNL REFN ESSN 2155-5435 JRNL PMID 27547488 JRNL DOI 10.1021/CS300709M REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.47 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 42778 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2269 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 REFLECTION IN BIN (WORKING SET) : 3148 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2220 REMARK 3 BIN FREE R VALUE SET COUNT : 172 REMARK 3 BIN FREE R VALUE : 0.2730 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4998 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 109 REMARK 3 SOLVENT ATOMS : 280 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.23 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : 0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.01000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.187 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.168 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.111 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.941 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.927 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5283 ; 0.020 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7168 ; 1.769 ; 1.997 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 664 ; 6.369 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 206 ;38.310 ;24.563 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 872 ;17.372 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;16.703 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 791 ; 0.138 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3920 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3255 ; 0.940 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5225 ; 1.634 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2028 ; 2.711 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1934 ; 4.052 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 139 REMARK 3 RESIDUE RANGE : A 285 A 342 REMARK 3 ORIGIN FOR THE GROUP (A): -22.5979 26.7647 -0.4626 REMARK 3 T TENSOR REMARK 3 T11: 0.0715 T22: 0.0646 REMARK 3 T33: 0.0807 T12: -0.0041 REMARK 3 T13: -0.0212 T23: 0.0221 REMARK 3 L TENSOR REMARK 3 L11: 1.5404 L22: 0.9702 REMARK 3 L33: 1.3107 L12: 0.3947 REMARK 3 L13: -0.4769 L23: -0.3404 REMARK 3 S TENSOR REMARK 3 S11: -0.0420 S12: 0.1225 S13: 0.0433 REMARK 3 S21: -0.2492 S22: 0.0548 S23: 0.1405 REMARK 3 S31: 0.0547 S32: 0.0426 S33: -0.0128 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 140 A 284 REMARK 3 ORIGIN FOR THE GROUP (A): -29.5320 12.6392 22.4270 REMARK 3 T TENSOR REMARK 3 T11: 0.0170 T22: 0.0445 REMARK 3 T33: 0.0348 T12: 0.0029 REMARK 3 T13: 0.0217 T23: 0.0070 REMARK 3 L TENSOR REMARK 3 L11: 0.8506 L22: 1.7265 REMARK 3 L33: 0.9890 L12: 0.2340 REMARK 3 L13: -0.0748 L23: 0.0744 REMARK 3 S TENSOR REMARK 3 S11: 0.0362 S12: -0.0901 S13: 0.0493 REMARK 3 S21: 0.1355 S22: -0.0180 S23: 0.1343 REMARK 3 S31: 0.0285 S32: 0.0043 S33: -0.0182 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 139 REMARK 3 RESIDUE RANGE : B 285 B 342 REMARK 3 ORIGIN FOR THE GROUP (A): -38.3857 -27.1324 30.6191 REMARK 3 T TENSOR REMARK 3 T11: 0.0386 T22: 0.0313 REMARK 3 T33: 0.0854 T12: -0.0284 REMARK 3 T13: -0.0122 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: 0.7250 L22: 2.2907 REMARK 3 L33: 3.5259 L12: 0.2141 REMARK 3 L13: -0.7483 L23: -1.3763 REMARK 3 S TENSOR REMARK 3 S11: 0.0201 S12: -0.0159 S13: 0.0443 REMARK 3 S21: -0.1616 S22: 0.2086 S23: 0.1938 REMARK 3 S31: -0.0839 S32: -0.0379 S33: -0.2287 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 140 B 284 REMARK 3 ORIGIN FOR THE GROUP (A): -25.6490 -12.5236 9.1797 REMARK 3 T TENSOR REMARK 3 T11: 0.1061 T22: 0.0307 REMARK 3 T33: 0.0080 T12: 0.0458 REMARK 3 T13: -0.0074 T23: -0.0083 REMARK 3 L TENSOR REMARK 3 L11: 1.0849 L22: 3.0986 REMARK 3 L33: 1.6382 L12: 0.3081 REMARK 3 L13: -0.1913 L23: -0.0308 REMARK 3 S TENSOR REMARK 3 S11: 0.0084 S12: 0.0771 S13: -0.0299 REMARK 3 S21: -0.1635 S22: 0.0574 S23: -0.1191 REMARK 3 S31: 0.3117 S32: 0.1058 S33: -0.0658 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4HFN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-OCT-12. REMARK 100 THE DEPOSITION ID IS D_1000075406. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JUL-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51397 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.010 REMARK 200 RESOLUTION RANGE LOW (A) : 37.470 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3J3H REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM KH2PO4/CITRATE BUFFER PH 4.5 + REMARK 280 45% PEG 300, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 44.43000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 74.93000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 44.43000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 74.93000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2090 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26610 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 OD1 ASN A 14 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 573 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 62 REMARK 465 ILE A 63 REMARK 465 GLU A 64 REMARK 465 GLY A 65 REMARK 465 SER A 66 REMARK 465 TYR A 67 REMARK 465 VAL A 68 REMARK 465 THR A 114 REMARK 465 GLN A 115 REMARK 465 THR A 116 REMARK 465 GLU A 343 REMARK 465 LEU A 344 REMARK 465 GLU A 345 REMARK 465 HIS A 346 REMARK 465 HIS A 347 REMARK 465 HIS A 348 REMARK 465 HIS A 349 REMARK 465 HIS A 350 REMARK 465 HIS A 351 REMARK 465 MET B 1 REMARK 465 THR B 17 REMARK 465 GLU B 38 REMARK 465 ILE B 63 REMARK 465 GLU B 64 REMARK 465 GLY B 65 REMARK 465 SER B 66 REMARK 465 TYR B 67 REMARK 465 VAL B 68 REMARK 465 THR B 114 REMARK 465 GLN B 115 REMARK 465 THR B 116 REMARK 465 TYR B 258 REMARK 465 ASN B 259 REMARK 465 LEU B 260 REMARK 465 GLU B 261 REMARK 465 GLN B 262 REMARK 465 THR B 263 REMARK 465 GLU B 343 REMARK 465 LEU B 344 REMARK 465 GLU B 345 REMARK 465 HIS B 346 REMARK 465 HIS B 347 REMARK 465 HIS B 348 REMARK 465 HIS B 349 REMARK 465 HIS B 350 REMARK 465 HIS B 351 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 33 CG CD CE NZ REMARK 470 LYS A 35 CG CD CE NZ REMARK 470 ARG A 61 NE CZ NH1 NH2 REMARK 470 LYS A 92 CD CE NZ REMARK 470 LYS A 152 CE NZ REMARK 470 LYS A 217 CE NZ REMARK 470 GLN A 262 CD OE1 NE2 REMARK 470 LYS A 306 CD CE NZ REMARK 470 ARG A 331 CD NE CZ NH1 NH2 REMARK 470 LYS B 13 CE NZ REMARK 470 TYR B 19 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS B 35 CD CE NZ REMARK 470 ASN B 41 CG OD1 ND2 REMARK 470 ARG B 57 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 61 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 62 CG CD CE NZ REMARK 470 GLU B 69 CG CD OE1 OE2 REMARK 470 LYS B 92 CD CE NZ REMARK 470 LYS B 119 CE NZ REMARK 470 LYS B 152 CD CE NZ REMARK 470 LYS B 188 CG CD CE NZ REMARK 470 ASP B 192 CG OD1 OD2 REMARK 470 GLN B 210 CG CD OE1 NE2 REMARK 470 LYS B 234 CD CE NZ REMARK 470 ILE B 255 CG2 CD1 REMARK 470 GLN B 257 CG CD OE1 NE2 REMARK 470 LYS B 306 CG CD CE NZ REMARK 470 ARG B 331 CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 150 58.79 33.26 REMARK 500 ALA A 161 48.07 35.90 REMARK 500 GLU B 147 -61.80 -93.85 REMARK 500 SER B 150 55.77 36.71 REMARK 500 VAL B 231 -55.95 -123.27 REMARK 500 GLU B 318 -16.61 -49.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 341 ARG A 342 -145.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAP A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CIY A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAP B 400 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4HFJ RELATED DB: PDB REMARK 900 RELATED ID: 4HFM RELATED DB: PDB DBREF 4HFN A 1 343 UNP Q9SLN8 Q9SLN8_TOBAC 1 343 DBREF 4HFN B 1 343 UNP Q9SLN8 Q9SLN8_TOBAC 1 343 SEQADV 4HFN LEU A 344 UNP Q9SLN8 EXPRESSION TAG SEQADV 4HFN GLU A 345 UNP Q9SLN8 EXPRESSION TAG SEQADV 4HFN HIS A 346 UNP Q9SLN8 EXPRESSION TAG SEQADV 4HFN HIS A 347 UNP Q9SLN8 EXPRESSION TAG SEQADV 4HFN HIS A 348 UNP Q9SLN8 EXPRESSION TAG SEQADV 4HFN HIS A 349 UNP Q9SLN8 EXPRESSION TAG SEQADV 4HFN HIS A 350 UNP Q9SLN8 EXPRESSION TAG SEQADV 4HFN HIS A 351 UNP Q9SLN8 EXPRESSION TAG SEQADV 4HFN LEU B 344 UNP Q9SLN8 EXPRESSION TAG SEQADV 4HFN GLU B 345 UNP Q9SLN8 EXPRESSION TAG SEQADV 4HFN HIS B 346 UNP Q9SLN8 EXPRESSION TAG SEQADV 4HFN HIS B 347 UNP Q9SLN8 EXPRESSION TAG SEQADV 4HFN HIS B 348 UNP Q9SLN8 EXPRESSION TAG SEQADV 4HFN HIS B 349 UNP Q9SLN8 EXPRESSION TAG SEQADV 4HFN HIS B 350 UNP Q9SLN8 EXPRESSION TAG SEQADV 4HFN HIS B 351 UNP Q9SLN8 EXPRESSION TAG SEQRES 1 A 351 MET ALA GLU GLU VAL SER ASN LYS GLN VAL ILE LEU LYS SEQRES 2 A 351 ASN TYR VAL THR GLY TYR PRO LYS GLU SER ASP MET GLU SEQRES 3 A 351 ILE LYS ASN VAL THR ILE LYS LEU LYS VAL PRO GLU GLY SEQRES 4 A 351 SER ASN ASP VAL VAL VAL LYS ASN LEU TYR LEU SER CYS SEQRES 5 A 351 ASP PRO TYR MET ARG SER ARG MET ARG LYS ILE GLU GLY SEQRES 6 A 351 SER TYR VAL GLU SER PHE ALA PRO GLY SER PRO ILE THR SEQRES 7 A 351 GLY TYR GLY VAL ALA LYS VAL LEU GLU SER GLY ASP PRO SEQRES 8 A 351 LYS PHE GLN LYS GLY ASP LEU VAL TRP GLY MET THR GLY SEQRES 9 A 351 TRP GLU GLU TYR SER ILE ILE THR PRO THR GLN THR LEU SEQRES 10 A 351 PHE LYS ILE HIS ASP LYS ASP VAL PRO LEU SER TYR TYR SEQRES 11 A 351 THR GLY ILE LEU GLY MET PRO GLY MET THR ALA TYR ALA SEQRES 12 A 351 GLY PHE HIS GLU VAL CYS SER PRO LYS LYS GLY GLU THR SEQRES 13 A 351 VAL PHE VAL SER ALA ALA SER GLY ALA VAL GLY GLN LEU SEQRES 14 A 351 VAL GLY GLN PHE ALA LYS MET LEU GLY CYS TYR VAL VAL SEQRES 15 A 351 GLY SER ALA GLY SER LYS GLU LYS VAL ASP LEU LEU LYS SEQRES 16 A 351 SER LYS PHE GLY PHE ASP GLU ALA PHE ASN TYR LYS GLU SEQRES 17 A 351 GLU GLN ASP LEU SER ALA ALA LEU LYS ARG TYR PHE PRO SEQRES 18 A 351 ASP GLY ILE ASP ILE TYR PHE GLU ASN VAL GLY GLY LYS SEQRES 19 A 351 MET LEU ASP ALA VAL LEU VAL ASN MET LYS LEU TYR GLY SEQRES 20 A 351 ARG ILE ALA VAL CYS GLY MET ILE SER GLN TYR ASN LEU SEQRES 21 A 351 GLU GLN THR GLU GLY VAL HIS ASN LEU PHE CYS LEU ILE SEQRES 22 A 351 THR LYS ARG ILE ARG MET GLU GLY PHE LEU VAL PHE ASP SEQRES 23 A 351 TYR TYR HIS LEU TYR PRO LYS TYR LEU GLU MET VAL ILE SEQRES 24 A 351 PRO GLN ILE LYS ALA GLY LYS VAL VAL TYR VAL GLU ASP SEQRES 25 A 351 VAL ALA HIS GLY LEU GLU SER ALA PRO THR ALA LEU VAL SEQRES 26 A 351 GLY LEU PHE SER GLY ARG ASN ILE GLY LYS GLN VAL VAL SEQRES 27 A 351 MET VAL SER ARG GLU LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 351 MET ALA GLU GLU VAL SER ASN LYS GLN VAL ILE LEU LYS SEQRES 2 B 351 ASN TYR VAL THR GLY TYR PRO LYS GLU SER ASP MET GLU SEQRES 3 B 351 ILE LYS ASN VAL THR ILE LYS LEU LYS VAL PRO GLU GLY SEQRES 4 B 351 SER ASN ASP VAL VAL VAL LYS ASN LEU TYR LEU SER CYS SEQRES 5 B 351 ASP PRO TYR MET ARG SER ARG MET ARG LYS ILE GLU GLY SEQRES 6 B 351 SER TYR VAL GLU SER PHE ALA PRO GLY SER PRO ILE THR SEQRES 7 B 351 GLY TYR GLY VAL ALA LYS VAL LEU GLU SER GLY ASP PRO SEQRES 8 B 351 LYS PHE GLN LYS GLY ASP LEU VAL TRP GLY MET THR GLY SEQRES 9 B 351 TRP GLU GLU TYR SER ILE ILE THR PRO THR GLN THR LEU SEQRES 10 B 351 PHE LYS ILE HIS ASP LYS ASP VAL PRO LEU SER TYR TYR SEQRES 11 B 351 THR GLY ILE LEU GLY MET PRO GLY MET THR ALA TYR ALA SEQRES 12 B 351 GLY PHE HIS GLU VAL CYS SER PRO LYS LYS GLY GLU THR SEQRES 13 B 351 VAL PHE VAL SER ALA ALA SER GLY ALA VAL GLY GLN LEU SEQRES 14 B 351 VAL GLY GLN PHE ALA LYS MET LEU GLY CYS TYR VAL VAL SEQRES 15 B 351 GLY SER ALA GLY SER LYS GLU LYS VAL ASP LEU LEU LYS SEQRES 16 B 351 SER LYS PHE GLY PHE ASP GLU ALA PHE ASN TYR LYS GLU SEQRES 17 B 351 GLU GLN ASP LEU SER ALA ALA LEU LYS ARG TYR PHE PRO SEQRES 18 B 351 ASP GLY ILE ASP ILE TYR PHE GLU ASN VAL GLY GLY LYS SEQRES 19 B 351 MET LEU ASP ALA VAL LEU VAL ASN MET LYS LEU TYR GLY SEQRES 20 B 351 ARG ILE ALA VAL CYS GLY MET ILE SER GLN TYR ASN LEU SEQRES 21 B 351 GLU GLN THR GLU GLY VAL HIS ASN LEU PHE CYS LEU ILE SEQRES 22 B 351 THR LYS ARG ILE ARG MET GLU GLY PHE LEU VAL PHE ASP SEQRES 23 B 351 TYR TYR HIS LEU TYR PRO LYS TYR LEU GLU MET VAL ILE SEQRES 24 B 351 PRO GLN ILE LYS ALA GLY LYS VAL VAL TYR VAL GLU ASP SEQRES 25 B 351 VAL ALA HIS GLY LEU GLU SER ALA PRO THR ALA LEU VAL SEQRES 26 B 351 GLY LEU PHE SER GLY ARG ASN ILE GLY LYS GLN VAL VAL SEQRES 27 B 351 MET VAL SER ARG GLU LEU GLU HIS HIS HIS HIS HIS HIS HET NAP A 400 48 HET CIY A 401 13 HET NAP B 400 48 HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETNAM CIY (2E)-3-(4-HYDROXY-3-METHOXYPHENYL)PROP-2-ENAL HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE HETSYN CIY CONIFERALDEHYDE FORMUL 3 NAP 2(C21 H28 N7 O17 P3) FORMUL 4 CIY C10 H10 O3 FORMUL 6 HOH *280(H2 O) HELIX 1 1 LYS A 21 SER A 23 5 3 HELIX 2 2 ASP A 53 ARG A 61 5 9 HELIX 3 3 PRO A 126 GLY A 132 5 7 HELIX 4 4 GLY A 135 GLU A 147 1 13 HELIX 5 5 VAL A 166 LEU A 177 1 12 HELIX 6 6 SER A 187 LYS A 197 1 11 HELIX 7 7 LYS A 207 GLU A 209 5 3 HELIX 8 8 ASP A 211 PHE A 220 1 10 HELIX 9 9 GLY A 233 VAL A 241 1 9 HELIX 10 10 MET A 254 TYR A 258 5 5 HELIX 11 11 PHE A 270 LYS A 275 1 6 HELIX 12 12 LEU A 283 HIS A 289 5 7 HELIX 13 13 LEU A 290 ALA A 304 1 15 HELIX 14 14 SER A 319 LEU A 327 1 9 HELIX 15 15 PHE A 328 GLY A 330 5 3 HELIX 16 16 LYS B 21 SER B 23 5 3 HELIX 17 17 ASP B 53 ARG B 61 5 9 HELIX 18 18 PRO B 126 GLY B 132 5 7 HELIX 19 19 GLY B 135 GLU B 147 1 13 HELIX 20 20 VAL B 166 LEU B 177 1 12 HELIX 21 21 SER B 187 LYS B 197 1 11 HELIX 22 22 ASP B 211 PHE B 220 1 10 HELIX 23 23 GLY B 232 VAL B 241 1 10 HELIX 24 24 PHE B 270 LYS B 275 1 6 HELIX 25 25 LEU B 283 HIS B 289 5 7 HELIX 26 26 LEU B 290 ALA B 304 1 15 HELIX 27 27 SER B 319 GLY B 330 1 12 SHEET 1 A 2 GLU A 3 LEU A 12 0 SHEET 2 A 2 MET A 25 LEU A 34 -1 O GLU A 26 N ILE A 11 SHEET 1 B 5 TYR A 108 ILE A 111 0 SHEET 2 B 5 VAL A 43 SER A 51 -1 N VAL A 43 O ILE A 111 SHEET 3 B 5 THR A 78 SER A 88 -1 O LEU A 86 N VAL A 44 SHEET 4 B 5 LEU A 98 GLY A 104 -1 O GLY A 101 N GLY A 81 SHEET 5 B 5 PHE A 118 LYS A 119 -1 O PHE A 118 N TRP A 100 SHEET 1 C 4 TYR A 108 ILE A 111 0 SHEET 2 C 4 VAL A 43 SER A 51 -1 N VAL A 43 O ILE A 111 SHEET 3 C 4 LYS A 335 MET A 339 -1 O VAL A 338 N LEU A 50 SHEET 4 C 4 GLU A 311 HIS A 315 1 N ASP A 312 O LYS A 335 SHEET 1 D12 GLU A 202 ASN A 205 0 SHEET 2 D12 TYR A 180 ALA A 185 1 N GLY A 183 O PHE A 204 SHEET 3 D12 THR A 156 VAL A 159 1 N VAL A 157 O VAL A 182 SHEET 4 D12 ILE A 224 GLU A 229 1 O PHE A 228 N PHE A 158 SHEET 5 D12 MET A 243 VAL A 251 1 O LYS A 244 N ILE A 224 SHEET 6 D12 ARG A 278 GLY A 281 1 O GLU A 280 N VAL A 251 SHEET 7 D12 ARG B 278 GLY B 281 -1 O MET B 279 N MET A 279 SHEET 8 D12 MET B 243 VAL B 251 1 N ILE B 249 O GLU B 280 SHEET 9 D12 ILE B 224 GLU B 229 1 N ASP B 225 O ARG B 248 SHEET 10 D12 THR B 156 VAL B 159 1 N PHE B 158 O ILE B 226 SHEET 11 D12 TYR B 180 ALA B 185 1 O TYR B 180 N VAL B 157 SHEET 12 D12 GLU B 202 ASN B 205 1 O PHE B 204 N ALA B 185 SHEET 1 E 2 GLU B 4 LEU B 12 0 SHEET 2 E 2 MET B 25 LYS B 33 -1 O GLU B 26 N ILE B 11 SHEET 1 F 5 TYR B 108 ILE B 111 0 SHEET 2 F 5 VAL B 43 SER B 51 -1 N VAL B 43 O ILE B 111 SHEET 3 F 5 THR B 78 SER B 88 -1 O VAL B 82 N LEU B 48 SHEET 4 F 5 LEU B 98 GLY B 104 -1 O VAL B 99 N ALA B 83 SHEET 5 F 5 PHE B 118 LYS B 119 -1 O PHE B 118 N TRP B 100 SHEET 1 G 4 TYR B 108 ILE B 111 0 SHEET 2 G 4 VAL B 43 SER B 51 -1 N VAL B 43 O ILE B 111 SHEET 3 G 4 LYS B 335 MET B 339 -1 O VAL B 338 N LEU B 50 SHEET 4 G 4 GLU B 311 HIS B 315 1 N ALA B 314 O MET B 339 SITE 1 AC1 37 PRO A 54 MET A 136 THR A 140 GLY A 164 SITE 2 AC1 37 ALA A 165 VAL A 166 ALA A 185 GLY A 186 SITE 3 AC1 37 LYS A 190 TYR A 206 GLN A 210 ASN A 230 SITE 4 AC1 37 CYS A 252 GLY A 253 MET A 254 ILE A 255 SITE 5 AC1 37 SER A 256 TYR A 258 PHE A 282 LEU A 283 SITE 6 AC1 37 VAL A 284 LEU A 327 PHE A 328 GLY A 330 SITE 7 AC1 37 ASN A 332 CIY A 401 HOH A 501 HOH A 502 SITE 8 AC1 37 HOH A 503 HOH A 505 HOH A 515 HOH A 524 SITE 9 AC1 37 HOH A 525 HOH A 537 HOH A 551 HOH A 632 SITE 10 AC1 37 HOH A 663 SITE 1 AC2 8 TYR A 55 TYR A 258 LEU A 283 PHE A 285 SITE 2 AC2 8 NAP A 400 HOH A 601 HOH A 632 PHE B 270 SITE 1 AC3 26 PRO B 54 MET B 136 THR B 140 GLY B 164 SITE 2 AC3 26 ALA B 165 VAL B 166 ALA B 185 GLY B 186 SITE 3 AC3 26 LYS B 190 TYR B 206 ASN B 230 CYS B 252 SITE 4 AC3 26 GLY B 253 ILE B 255 PHE B 282 LEU B 283 SITE 5 AC3 26 VAL B 284 GLY B 334 HOH B 505 HOH B 519 SITE 6 AC3 26 HOH B 521 HOH B 533 HOH B 550 HOH B 563 SITE 7 AC3 26 HOH B 587 HOH B 603 CRYST1 88.860 149.860 67.210 90.00 115.96 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011254 0.000000 0.005479 0.00000 SCALE2 0.000000 0.006673 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016548 0.00000