HEADER IMMUNE SYSTEM 08-OCT-12 4HGW TITLE CRYSTAL STRUCTURE OF S25-2 IN COMPLEX WITH A 5,6-DEHYDRO-KDO TITLE 2 DISACCHARIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANTIBODY FAB FRAGMENT, LIGHT CHAIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: ANTIBODY FAB FRAGMENT, HEAVY CHAIN; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: MUS MUSCULUS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 10090; SOURCE 7 EXPRESSION_SYSTEM_CELL_LINE: HYDRIDOMA; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 10 ORGANISM_COMMON: MOUSE; SOURCE 11 ORGANISM_TAXID: 10090; SOURCE 12 EXPRESSION_SYSTEM: MUS MUSCULUS; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 10090; SOURCE 14 EXPRESSION_SYSTEM_CELL_LINE: HYBRIDOMA KEYWDS ANTIBODY, LPS, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR C.L.BROOKS,S.V.EVANS REVDAT 5 20-SEP-23 4HGW 1 HETSYN REVDAT 4 29-JUL-20 4HGW 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE ATOM REVDAT 3 22-APR-20 4HGW 1 LINK REVDAT 2 30-JAN-13 4HGW 1 JRNL REVDAT 1 09-JAN-13 4HGW 0 JRNL AUTH C.L.BROOKS,K.WIMMER,P.KOSMA,S.MULLER-LOENNIES,L.BRADE, JRNL AUTH 2 H.BRADE,S.V.EVANS JRNL TITL EXPLORING THE CROSS-REACTIVITY OF S25-2: COMPLEX WITH A JRNL TITL 2 5,6-DEHYDRO-KDO DISACCHARIDE. JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 69 2 2013 JRNL REFN ESSN 1744-3091 JRNL PMID 23295476 JRNL DOI 10.1107/S1744309112047422 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.1_1168 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.92 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 3 NUMBER OF REFLECTIONS : 57382 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 2915 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.9235 - 4.5324 0.92 2672 147 0.1696 0.1578 REMARK 3 2 4.5324 - 3.6045 0.94 2619 148 0.1535 0.1810 REMARK 3 3 3.6045 - 3.1509 0.94 2597 142 0.1719 0.1794 REMARK 3 4 3.1509 - 2.8637 0.95 2577 131 0.1784 0.2028 REMARK 3 5 2.8637 - 2.6589 0.94 2562 148 0.1756 0.2288 REMARK 3 6 2.6589 - 2.5025 0.94 2549 146 0.1800 0.2083 REMARK 3 7 2.5025 - 2.3774 0.95 2572 115 0.1821 0.1819 REMARK 3 8 2.3774 - 2.2740 0.95 2543 148 0.1734 0.1864 REMARK 3 9 2.2740 - 2.1866 0.96 2610 138 0.1709 0.1804 REMARK 3 10 2.1866 - 2.1112 0.96 2605 121 0.1824 0.1769 REMARK 3 11 2.1112 - 2.0453 0.96 2589 132 0.1783 0.2400 REMARK 3 12 2.0453 - 1.9869 0.97 2579 130 0.1831 0.2192 REMARK 3 13 1.9869 - 1.9346 0.97 2631 157 0.1900 0.2234 REMARK 3 14 1.9346 - 1.8875 0.97 2601 141 0.1909 0.2296 REMARK 3 15 1.8875 - 1.8446 0.97 2597 143 0.1954 0.2666 REMARK 3 16 1.8446 - 1.8053 0.98 2628 125 0.2103 0.2797 REMARK 3 17 1.8053 - 1.7693 0.97 2601 121 0.2085 0.2753 REMARK 3 18 1.7693 - 1.7359 0.97 2610 130 0.2070 0.2614 REMARK 3 19 1.7359 - 1.7049 0.97 2594 158 0.2029 0.2716 REMARK 3 20 1.7049 - 1.6760 0.97 2580 137 0.2082 0.2453 REMARK 3 21 1.6760 - 1.6490 0.95 2551 157 0.2206 0.2634 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.930 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.015 3458 REMARK 3 ANGLE : 1.480 4699 REMARK 3 CHIRALITY : 0.073 530 REMARK 3 PLANARITY : 0.005 590 REMARK 3 DIHEDRAL : 12.223 1230 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4HGW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-OCT-12. REMARK 100 THE DEPOSITION ID IS D_1000075451. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-OCT-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : D*TREK 9.4SSI REMARK 200 DATA SCALING SOFTWARE : D*TREK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 57408 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 19.920 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.9 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.71 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.71 REMARK 200 R MERGE FOR SHELL (I) : 0.25300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3T77 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.29 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8000, MGCL, TRIS, ZNCL, VAPOR REMARK 280 DIFFUSION, TEMPERATURE 298K, PH 8 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.85500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 65.71000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.65000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 65.71000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.85500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.65000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4200 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -83.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 155 REMARK 465 ASN A 156 REMARK 465 TYR B 101A REMARK 465 GLY B 126 REMARK 465 SER B 127 REMARK 465 ALA B 128 REMARK 465 ALA B 129 REMARK 465 GLN B 130 REMARK 465 THR B 131 REMARK 465 ASN B 132 REMARK 465 ARG B 212 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH22 ARG A 154 O HOH A 665 1.38 REMARK 500 HZ2 LYS B 64 O HOH B 623 1.43 REMARK 500 HH12 ARG A 154 O HOH A 665 1.52 REMARK 500 HG SER A 167 O HOH A 528 1.57 REMARK 500 HZ1 LYS B 208 O HOH B 681 1.58 REMARK 500 H2 GLU B 1 O HOH B 507 1.58 REMARK 500 O HOH A 479 O HOH A 680 1.81 REMARK 500 O HOH B 502 O HOH B 589 1.82 REMARK 500 O HOH A 628 O HOH A 641 1.84 REMARK 500 O HOH B 479 O HOH B 535 1.87 REMARK 500 O HOH B 634 O HOH B 684 1.88 REMARK 500 N GLY A 157 O HOH A 630 1.89 REMARK 500 O HOH A 574 O HOH A 672 1.90 REMARK 500 OG SER B 189 O HOH B 596 1.97 REMARK 500 NH2 ARG A 154 O HOH A 665 1.97 REMARK 500 O HOH B 605 O HOH B 654 1.98 REMARK 500 O HOH B 511 O HOH B 610 1.99 REMARK 500 O HOH A 511 O HOH A 644 2.05 REMARK 500 OG SER A 167 O HOH A 528 2.05 REMARK 500 NH1 ARG A 154 O HOH A 665 2.07 REMARK 500 O HOH A 547 O HOH B 410 2.07 REMARK 500 O HOH B 626 O HOH B 688 2.09 REMARK 500 O HOH A 542 O HOH A 679 2.09 REMARK 500 O HOH A 558 O HOH A 673 2.09 REMARK 500 O HOH A 592 O HOH A 638 2.10 REMARK 500 OD2 ASP A 164 O HOH A 612 2.10 REMARK 500 O HOH B 595 O HOH B 616 2.11 REMARK 500 O HOH B 412 O HOH B 499 2.12 REMARK 500 O HOH B 529 O HOH B 652 2.13 REMARK 500 O HOH B 594 O HOH B 627 2.13 REMARK 500 O HOH A 510 O HOH A 549 2.14 REMARK 500 O HOH B 600 O HOH B 677 2.15 REMARK 500 O HOH A 599 O HOH A 604 2.18 REMARK 500 O HOH B 588 O HOH B 622 2.19 REMARK 500 OD2 ASP A 150 O HOH A 674 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 461 O HOH A 565 3554 1.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 133 CB CYS A 133 SG -0.112 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 51 -43.40 71.98 REMARK 500 ALA A 84 167.82 179.75 REMARK 500 LEU A 94 -141.18 51.22 REMARK 500 ASP B 95 -146.15 -118.58 REMARK 500 TYR B 99 -57.41 -123.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 137 OD1 REMARK 620 2 HIS B 163 NE2 122.3 REMARK 620 3 HOH B 599 O 124.7 111.9 REMARK 620 4 HOH B 672 O 99.4 120.5 57.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 184 OE2 REMARK 620 2 HIS A 188 NE2 97.4 REMARK 620 3 HOH A 408 O 98.9 105.9 REMARK 620 N 1 2 DBREF 4HGW A 1 213 PDB 4HGW 4HGW 1 213 DBREF 4HGW B 1 212 PDB 4HGW 4HGW 1 212 SEQRES 1 A 219 ASP ILE VAL MET SER GLN SER PRO SER SER LEU ALA VAL SEQRES 2 A 219 SER ALA GLY GLU LYS VAL THR MET SER CYS LYS SER SER SEQRES 3 A 219 GLN SER LEU LEU ASN SER ARG THR ARG LYS ASN TYR LEU SEQRES 4 A 219 ALA TRP TYR GLN GLN LYS PRO GLY GLN SER PRO LYS LEU SEQRES 5 A 219 LEU ILE TYR TRP ALA SER THR ARG GLU SER GLY VAL PRO SEQRES 6 A 219 ASP ARG PHE THR GLY SER GLY SER GLY THR ASP PHE THR SEQRES 7 A 219 LEU THR ILE THR SER VAL GLN ALA GLU ASP LEU ALA VAL SEQRES 8 A 219 TYR TYR CYS LYS GLN SER TYR ASN LEU ARG THR PHE GLY SEQRES 9 A 219 GLY GLY THR LYS LEU GLU ILE LYS ARG ALA ASP ALA ALA SEQRES 10 A 219 PRO THR VAL SER ILE PHE PRO PRO SER SER GLU GLN LEU SEQRES 11 A 219 THR SER GLY GLY ALA SER VAL VAL CYS PHE LEU ASN ASN SEQRES 12 A 219 PHE TYR PRO LYS ASP ILE ASN VAL LYS TRP LYS ILE ASP SEQRES 13 A 219 GLY SER GLU ARG GLN ASN GLY VAL LEU ASN SER TRP THR SEQRES 14 A 219 ASP GLN ASP SER LYS ASP SER THR TYR SER MET SER SER SEQRES 15 A 219 THR LEU THR LEU THR LYS ASP GLU TYR GLU ARG HIS ASN SEQRES 16 A 219 SER TYR THR CYS GLU ALA THR HIS LYS THR SER THR SER SEQRES 17 A 219 PRO ILE VAL LYS SER PHE ASN ARG ASN GLU CYS SEQRES 1 B 222 GLU VAL LYS LEU VAL GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 B 222 SER GLY GLY SER LEU ARG LEU SER CYS ALA THR SER GLY SEQRES 3 B 222 PHE THR PHE THR ASP TYR TYR MET SER TRP VAL ARG GLN SEQRES 4 B 222 PRO PRO GLY LYS ALA LEU GLU TRP LEU GLY PHE ILE ARG SEQRES 5 B 222 ASN LYS ALA ASN GLY TYR THR THR GLU TYR SER PRO SER SEQRES 6 B 222 VAL LYS GLY ARG PHE THR ILE SER ARG ASP ASN SER GLN SEQRES 7 B 222 SER ILE LEU TYR LEU GLN MET ASN THR LEU ARG ALA GLU SEQRES 8 B 222 ASP SER ALA THR TYR TYR CYS ALA ARG ASP HIS ASP GLY SEQRES 9 B 222 TYR TYR GLU ARG PHE SER TYR TRP GLY GLN GLY THR LEU SEQRES 10 B 222 VAL THR VAL SER ALA ALA LYS THR THR PRO PRO SER VAL SEQRES 11 B 222 TYR PRO LEU ALA PRO GLY SER ALA ALA GLN THR ASN SER SEQRES 12 B 222 MET VAL THR LEU GLY CYS LEU VAL LYS GLY TYR PHE PRO SEQRES 13 B 222 GLU PRO VAL THR VAL THR TRP ASN SER GLY SER LEU SER SEQRES 14 B 222 SER GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SER ASP SEQRES 15 B 222 LEU TYR THR LEU SER SER SER VAL THR VAL PRO SER SER SEQRES 16 B 222 THR TRP PRO SER GLU THR VAL THR CYS ASN VAL ALA HIS SEQRES 17 B 222 PRO ALA SER SER THR LYS VAL ASP LYS LYS ILE VAL PRO SEQRES 18 B 222 ARG HET KTU C 1 18 HET KDO C 2 15 HET ZN A 301 1 HET ZN A 302 1 HETNAM KTU PROP-2-EN-1-YL 3,5-DIDEOXY-ALPHA-D-THREO-OCT-5-EN-2- HETNAM 2 KTU ULOPYRANOSIDONIC ACID HETNAM KDO 3-DEOXY-ALPHA-D-MANNO-OCT-2-ULOPYRANOSONIC ACID HETNAM ZN ZINC ION HETSYN KTU PROP-2-EN-1-YL 3,5-DIDEOXY-ALPHA-D-THREO-OCT-5-EN-2- HETSYN 2 KTU ULOSIDONIC ACID; PROP-2-EN-1-YL 3,5-DIDEOXY-D-THREO- HETSYN 3 KTU OCT-5-EN-2-ULOSIDONIC ACID; PROP-2-EN-1-YL 3,5- HETSYN 4 KTU DIDEOXY-THREO-OCT-5-EN-2-ULOSIDONIC ACID HETSYN KDO 3-DEOXY-D-MANNO-OCT-2-ULOPYRANOSONIC ACID; 2-KETO-3- HETSYN 2 KDO DEOXY-D-MANNOOCTANOIC ACID; 3-DEOXY-ALPHA-D-MANNO-OCT- HETSYN 3 KDO 2-ULOSONIC ACID; 3-DEOXY-D-MANNO-OCT-2-ULOSONIC ACID; HETSYN 4 KDO 3-DEOXY-MANNO-OCT-2-ULOSONIC ACID FORMUL 3 KTU C11 H16 O7 FORMUL 3 KDO C8 H14 O8 FORMUL 4 ZN 2(ZN 2+) FORMUL 6 HOH *585(H2 O) HELIX 1 1 GLN A 79 LEU A 83 5 5 HELIX 2 2 SER A 120 THR A 125 1 6 HELIX 3 3 LYS A 182 GLU A 186 1 5 HELIX 4 4 ASN A 211 CYS A 213 5 3 HELIX 5 5 THR B 28 TYR B 32 5 5 HELIX 6 6 ASN B 52A GLY B 54 5 5 HELIX 7 7 ARG B 83 SER B 87 5 5 HELIX 8 8 SER B 155 SER B 157 5 3 HELIX 9 9 PRO B 199 SER B 202 5 4 SHEET 1 A 4 MET A 4 SER A 7 0 SHEET 2 A 4 VAL A 19 SER A 25 -1 O SER A 22 N SER A 7 SHEET 3 A 4 ASP A 70 ILE A 75 -1 O ILE A 75 N VAL A 19 SHEET 4 A 4 PHE A 62 SER A 67 -1 N THR A 63 O THR A 74 SHEET 1 B 6 SER A 10 SER A 14 0 SHEET 2 B 6 THR A 101 LYS A 106 1 O GLU A 104 N LEU A 11 SHEET 3 B 6 ALA A 84 GLN A 90 -1 N ALA A 84 O LEU A 103 SHEET 4 B 6 LEU A 33 GLN A 38 -1 N TYR A 36 O TYR A 87 SHEET 5 B 6 LYS A 45 TYR A 49 -1 O LYS A 45 N GLN A 37 SHEET 6 B 6 THR A 53 ARG A 54 -1 O THR A 53 N TYR A 49 SHEET 1 C 4 SER A 10 SER A 14 0 SHEET 2 C 4 THR A 101 LYS A 106 1 O GLU A 104 N LEU A 11 SHEET 3 C 4 ALA A 84 GLN A 90 -1 N ALA A 84 O LEU A 103 SHEET 4 C 4 THR A 96 PHE A 97 -1 O THR A 96 N GLN A 90 SHEET 1 D 4 THR A 113 PHE A 117 0 SHEET 2 D 4 GLY A 128 PHE A 138 -1 O ASN A 136 N THR A 113 SHEET 3 D 4 TYR A 172 THR A 181 -1 O LEU A 178 N VAL A 131 SHEET 4 D 4 VAL A 158 TRP A 162 -1 N SER A 161 O SER A 175 SHEET 1 E 4 SER A 152 GLU A 153 0 SHEET 2 E 4 ASN A 144 ILE A 149 -1 N ILE A 149 O SER A 152 SHEET 3 E 4 SER A 190 THR A 196 -1 O GLU A 194 N LYS A 146 SHEET 4 E 4 ILE A 204 ASN A 209 -1 O ILE A 204 N ALA A 195 SHEET 1 F 4 LYS B 3 SER B 7 0 SHEET 2 F 4 LEU B 18 SER B 25 -1 O ALA B 23 N VAL B 5 SHEET 3 F 4 ILE B 77 MET B 82 -1 O LEU B 78 N CYS B 22 SHEET 4 F 4 PHE B 67 ASP B 72 -1 N THR B 68 O GLN B 81 SHEET 1 G 6 LEU B 11 VAL B 12 0 SHEET 2 G 6 THR B 106 VAL B 110 1 O THR B 109 N VAL B 12 SHEET 3 G 6 ALA B 88 ARG B 94 -1 N ALA B 88 O VAL B 108 SHEET 4 G 6 MET B 34 GLN B 39 -1 N VAL B 37 O TYR B 91 SHEET 5 G 6 GLU B 46 ILE B 51 -1 O LEU B 48 N TRP B 36 SHEET 6 G 6 THR B 57 TYR B 59 -1 O GLU B 58 N PHE B 50 SHEET 1 H 4 SER B 119 LEU B 123 0 SHEET 2 H 4 MET B 134 TYR B 144 -1 O LYS B 142 N SER B 119 SHEET 3 H 4 LEU B 173 PRO B 183 -1 O VAL B 182 N VAL B 135 SHEET 4 H 4 VAL B 162 GLN B 170 -1 N HIS B 163 O SER B 179 SHEET 1 I 3 THR B 150 TRP B 153 0 SHEET 2 I 3 THR B 193 HIS B 198 -1 O ASN B 195 N THR B 152 SHEET 3 I 3 THR B 203 LYS B 208 -1 O VAL B 205 N VAL B 196 SSBOND 1 CYS A 23 CYS A 88 1555 1555 2.05 SSBOND 2 CYS A 133 CYS A 193 1555 1555 2.06 SSBOND 3 CYS B 22 CYS B 92 1555 1555 2.04 SSBOND 4 CYS B 139 CYS B 194 1555 1555 2.02 LINK O4 KTU C 1 C2 KDO C 2 1555 1555 1.46 LINK OD1 ASN A 137 ZN ZN A 302 1555 1555 2.05 LINK OE2 GLU A 184 ZN ZN A 301 1555 1555 1.94 LINK NE2 HIS A 188 ZN ZN A 301 1555 1555 1.90 LINK ZN ZN A 301 O HOH A 408 1555 1555 2.24 LINK ZN ZN A 302 NE2 HIS B 163 1555 1555 2.14 LINK ZN ZN A 302 O HOH B 599 1555 1555 1.97 LINK ZN ZN A 302 O HOH B 672 1555 1555 2.55 CISPEP 1 SER A 7 PRO A 8 0 -4.84 CISPEP 2 TYR A 139 PRO A 140 0 2.57 CISPEP 3 PHE B 145 PRO B 146 0 -5.33 CISPEP 4 GLU B 147 PRO B 148 0 1.09 CISPEP 5 TRP B 187 PRO B 188 0 4.11 CRYST1 45.710 81.300 131.420 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021877 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012300 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007609 0.00000