HEADER TRANSFERASE 10-OCT-12 4HHJ TITLE DENGUE SEROTYPE 3 RNA-DEPENDENT RNA POLYMERASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: NON-STRUCTURAL PROTEIN 5; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RNA-DEPENDENT RNA POLYMERASE, UNP RESIDUES 2762-3390; COMPND 5 EC: 2.7.7.48; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DENGUE VIRUS 3; SOURCE 3 ORGANISM_TAXID: 11069; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS RDRP, VIRAL PROTEIN, RNA-DEPENDENT RNA POLYMERASE, RNA BINDING, ER KEYWDS 2 MEMBRANE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR C.G.NOBLE,J.LESCAR REVDAT 3 08-NOV-23 4HHJ 1 REMARK SEQADV LINK REVDAT 2 31-JUL-13 4HHJ 1 JRNL REVDAT 1 27-FEB-13 4HHJ 0 JRNL AUTH C.G.NOBLE,S.P.LIM,Y.L.CHEN,C.W.LIEW,L.YAP,J.LESCAR,P.-Y.SHI JRNL TITL CONFORMATIONAL FLEXIBILITY OF THE DENGUE VIRUS RNA-DEPENDENT JRNL TITL 2 RNA POLYMERASE REVEALED BY A COMPLEX WITH AN INHIBITOR JRNL REF J.VIROL. V. 87 5291 2013 JRNL REFN ISSN 0022-538X JRNL PMID 23408636 JRNL DOI 10.1128/JVI.00045-13 REMARK 2 REMARK 2 RESOLUTION. 1.79 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.79 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.85 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 78166 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 3935 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.79 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.84 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.47 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 5443 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2422 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 5149 REMARK 3 BIN R VALUE (WORKING SET) : 0.2415 REMARK 3 BIN FREE R VALUE : 0.2544 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.40 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 294 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4781 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 42 REMARK 3 SOLVENT ATOMS : 661 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.67 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.54 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.60310 REMARK 3 B22 (A**2) : 0.71420 REMARK 3 B33 (A**2) : -0.11110 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.191 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.099 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 4984 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 6738 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1795 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 126 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 715 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 4984 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 1 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 624 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 6229 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.00 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.25 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 16.82 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4HHJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-OCT-12. REMARK 100 THE DEPOSITION ID IS D_1000075473. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-AUG-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 78264 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.790 REMARK 200 RESOLUTION RANGE LOW (A) : 59.710 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.79 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2J7U REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.81 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS PH 8.0, 25% PEG 550 MME, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 28.91000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 28.91000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 80.66000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 88.80500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 80.66000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 88.80500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 28.91000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 80.66000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 88.80500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 28.91000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 80.66000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 88.80500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 C9 P6G A1003 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 266 REMARK 465 SER A 267 REMARK 465 HIS A 268 REMARK 465 MET A 269 REMARK 465 LEU A 270 REMARK 465 ASP A 271 REMARK 465 ALA A 407 REMARK 465 MET A 408 REMARK 465 GLY A 409 REMARK 465 ALA A 410 REMARK 465 VAL A 411 REMARK 465 PHE A 412 REMARK 465 THR A 413 REMARK 465 GLU A 414 REMARK 465 GLU A 415 REMARK 465 ASN A 416 REMARK 465 GLN A 417 REMARK 465 TRP A 418 REMARK 465 ASP A 419 REMARK 465 GLU A 458 REMARK 465 LYS A 459 REMARK 465 LYS A 460 REMARK 465 LEU A 461 REMARK 465 GLY A 462 REMARK 465 GLU A 463 REMARK 465 PHE A 464 REMARK 465 GLY A 465 REMARK 465 LYS A 466 REMARK 465 ALA A 467 REMARK 465 LYS A 468 REMARK 465 PRO A 884 REMARK 465 SER A 885 REMARK 465 MET A 886 REMARK 465 LYS A 887 REMARK 465 ARG A 888 REMARK 465 PHE A 889 REMARK 465 ARG A 890 REMARK 465 LYS A 891 REMARK 465 GLU A 892 REMARK 465 GLU A 893 REMARK 465 GLU A 894 REMARK 465 SER A 895 REMARK 465 GLU A 896 REMARK 465 GLY A 897 REMARK 465 ALA A 898 REMARK 465 ILE A 899 REMARK 465 TRP A 900 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 456 CG CD CE NZ REMARK 470 VAL A 480 CG1 CG2 REMARK 470 THR A 585 OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 333 40.85 -93.96 REMARK 500 MET A 342 43.25 -109.72 REMARK 500 SER A 448 10.07 -141.19 REMARK 500 MET A 454 -147.16 -126.36 REMARK 500 TYR A 503 -53.23 72.90 REMARK 500 GLN A 597 162.68 75.58 REMARK 500 SER A 791 -161.75 57.98 REMARK 500 ILE A 818 -72.22 -112.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1002 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 437 OE1 REMARK 620 2 HIS A 441 NE2 98.8 REMARK 620 3 CYS A 446 SG 98.0 120.9 REMARK 620 4 CYS A 449 SG 117.9 110.1 110.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 712 NE2 REMARK 620 2 HIS A 714 NE2 100.2 REMARK 620 3 CYS A 728 SG 105.9 106.6 REMARK 620 4 CYS A 847 SG 101.4 116.7 122.7 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE P6G A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 1005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 1006 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3VWS RELATED DB: PDB REMARK 900 THE SAME PROTEIN WITH AN INHIBITOR REMARK 999 REMARK 999 SEQUENCE REMARK 999 RESIDUE 374 GLU IS A NATURALLY OCCURRED MUTATION IN THE VIRAL REMARK 999 SEQUENCE. DBREF 4HHJ A 272 900 UNP Q6DLV0 Q6DLV0_9FLAV 2762 3390 SEQADV 4HHJ GLY A 266 UNP Q6DLV0 EXPRESSION TAG SEQADV 4HHJ SER A 267 UNP Q6DLV0 EXPRESSION TAG SEQADV 4HHJ HIS A 268 UNP Q6DLV0 EXPRESSION TAG SEQADV 4HHJ MET A 269 UNP Q6DLV0 EXPRESSION TAG SEQADV 4HHJ LEU A 270 UNP Q6DLV0 EXPRESSION TAG SEQADV 4HHJ ASP A 271 UNP Q6DLV0 EXPRESSION TAG SEQADV 4HHJ GLU A 374 UNP Q6DLV0 GLY 2864 SEE REMARK 999 SEQRES 1 A 635 GLY SER HIS MET LEU ASP ASN MET ASP VAL ILE GLY GLU SEQRES 2 A 635 ARG ILE LYS ARG ILE LYS GLU GLU HIS ASN SER THR TRP SEQRES 3 A 635 HIS TYR ASP ASP GLU ASN PRO TYR LYS THR TRP ALA TYR SEQRES 4 A 635 HIS GLY SER TYR GLU VAL LYS ALA THR GLY SER ALA SER SEQRES 5 A 635 SER MET ILE ASN GLY VAL VAL LYS LEU LEU THR LYS PRO SEQRES 6 A 635 TRP ASP VAL VAL PRO MET VAL THR GLN MET ALA MET THR SEQRES 7 A 635 ASP THR THR PRO PHE GLY GLN GLN ARG VAL PHE LYS GLU SEQRES 8 A 635 LYS VAL ASP THR ARG THR PRO ARG PRO LEU PRO GLY THR SEQRES 9 A 635 ARG LYS VAL MET GLU ILE THR ALA GLU TRP LEU TRP ARG SEQRES 10 A 635 THR LEU GLY ARG ASN LYS ARG PRO ARG LEU CYS THR ARG SEQRES 11 A 635 GLU GLU PHE THR LYS LYS VAL ARG THR ASN ALA ALA MET SEQRES 12 A 635 GLY ALA VAL PHE THR GLU GLU ASN GLN TRP ASP SER ALA SEQRES 13 A 635 LYS ALA ALA VAL GLU ASP GLU GLU PHE TRP LYS LEU VAL SEQRES 14 A 635 ASP ARG GLU ARG GLU LEU HIS LYS LEU GLY LYS CYS GLY SEQRES 15 A 635 SER CYS VAL TYR ASN MET MET GLY LYS ARG GLU LYS LYS SEQRES 16 A 635 LEU GLY GLU PHE GLY LYS ALA LYS GLY SER ARG ALA ILE SEQRES 17 A 635 TRP TYR MET TRP LEU GLY VAL ARG TYR LEU GLU PHE GLU SEQRES 18 A 635 ALA LEU GLY PHE LEU ASN GLU ASP HIS TRP PHE SER ARG SEQRES 19 A 635 GLU ASN SER TYR SER GLY VAL GLU GLY GLU GLY LEU HIS SEQRES 20 A 635 LYS LEU GLY TYR ILE LEU ARG ASP ILE SER LYS ILE PRO SEQRES 21 A 635 GLY GLY ALA MET TYR ALA ASP ASP THR ALA GLY TRP ASP SEQRES 22 A 635 THR ARG ILE THR GLU ASP ASP LEU HIS ASN GLU GLU LYS SEQRES 23 A 635 ILE ILE GLN GLN MET ASP PRO GLU HIS ARG GLN LEU ALA SEQRES 24 A 635 ASN ALA ILE PHE LYS LEU THR TYR GLN ASN LYS VAL VAL SEQRES 25 A 635 LYS VAL GLN ARG PRO THR PRO THR GLY THR VAL MET ASP SEQRES 26 A 635 ILE ILE SER ARG LYS ASP GLN ARG GLY SER GLY GLN VAL SEQRES 27 A 635 GLY THR TYR GLY LEU ASN THR PHE THR ASN MET GLU ALA SEQRES 28 A 635 GLN LEU VAL ARG GLN MET GLU GLY GLU GLY VAL LEU THR SEQRES 29 A 635 LYS ALA ASP LEU GLU ASN PRO HIS LEU LEU GLU LYS LYS SEQRES 30 A 635 ILE THR GLN TRP LEU GLU THR LYS GLY VAL GLU ARG LEU SEQRES 31 A 635 LYS ARG MET ALA ILE SER GLY ASP ASP CYS VAL VAL LYS SEQRES 32 A 635 PRO ILE ASP ASP ARG PHE ALA ASN ALA LEU LEU ALA LEU SEQRES 33 A 635 ASN ASP MET GLY LYS VAL ARG LYS ASP ILE PRO GLN TRP SEQRES 34 A 635 GLN PRO SER LYS GLY TRP HIS ASP TRP GLN GLN VAL PRO SEQRES 35 A 635 PHE CYS SER HIS HIS PHE HIS GLU LEU ILE MET LYS ASP SEQRES 36 A 635 GLY ARG LYS LEU VAL VAL PRO CYS ARG PRO GLN ASP GLU SEQRES 37 A 635 LEU ILE GLY ARG ALA ARG ILE SER GLN GLY ALA GLY TRP SEQRES 38 A 635 SER LEU ARG GLU THR ALA CYS LEU GLY LYS ALA TYR ALA SEQRES 39 A 635 GLN MET TRP SER LEU MET TYR PHE HIS ARG ARG ASP LEU SEQRES 40 A 635 ARG LEU ALA SER ASN ALA ILE CYS SER ALA VAL PRO VAL SEQRES 41 A 635 HIS TRP VAL PRO THR SER ARG THR THR TRP SER ILE HIS SEQRES 42 A 635 ALA HIS HIS GLN TRP MET THR THR GLU ASP MET LEU THR SEQRES 43 A 635 VAL TRP ASN ARG VAL TRP ILE GLU GLU ASN PRO TRP MET SEQRES 44 A 635 GLU ASP LYS THR PRO VAL THR THR TRP GLU ASN VAL PRO SEQRES 45 A 635 TYR LEU GLY LYS ARG GLU ASP GLN TRP CYS GLY SER LEU SEQRES 46 A 635 ILE GLY LEU THR SER ARG ALA THR TRP ALA GLN ASN ILE SEQRES 47 A 635 PRO THR ALA ILE GLN GLN VAL ARG SER LEU ILE GLY ASN SEQRES 48 A 635 GLU GLU PHE LEU ASP TYR MET PRO SER MET LYS ARG PHE SEQRES 49 A 635 ARG LYS GLU GLU GLU SER GLU GLY ALA ILE TRP HET ZN A1001 1 HET ZN A1002 1 HET P6G A1003 19 HET PEG A1004 7 HET PEG A1005 7 HET PEG A1006 7 HETNAM ZN ZINC ION HETNAM P6G HEXAETHYLENE GLYCOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN P6G POLYETHYLENE GLYCOL PEG400 FORMUL 2 ZN 2(ZN 2+) FORMUL 4 P6G C12 H26 O7 FORMUL 5 PEG 3(C4 H10 O3) FORMUL 8 HOH *661(H2 O) HELIX 1 1 ASN A 272 HIS A 287 1 16 HELIX 2 2 ASN A 321 THR A 328 1 8 HELIX 3 3 LYS A 329 VAL A 333 5 5 HELIX 4 4 VAL A 334 ALA A 341 1 8 HELIX 5 5 THR A 346 LYS A 357 1 12 HELIX 6 6 LEU A 366 GLY A 385 1 20 HELIX 7 7 THR A 394 ALA A 406 1 13 HELIX 8 8 ALA A 421 ASP A 427 1 7 HELIX 9 9 ASP A 427 LEU A 443 1 17 HELIX 10 10 SER A 470 GLY A 489 1 20 HELIX 11 11 GLY A 489 ASP A 494 1 6 HELIX 12 12 SER A 498 TYR A 503 1 6 HELIX 13 13 GLY A 510 LYS A 523 1 14 HELIX 14 14 GLY A 536 ILE A 541 5 6 HELIX 15 15 THR A 542 GLU A 550 1 9 HELIX 16 16 LYS A 551 MET A 556 5 6 HELIX 17 17 ASP A 557 TYR A 572 1 16 HELIX 18 18 GLY A 604 GLU A 625 1 22 HELIX 19 19 THR A 629 ASN A 635 1 7 HELIX 20 20 GLU A 640 LYS A 656 1 17 HELIX 21 21 ASP A 671 ALA A 677 5 7 HELIX 22 22 LEU A 678 MET A 684 1 7 HELIX 23 23 ASP A 702 VAL A 706 5 5 HELIX 24 24 PRO A 730 ARG A 739 1 10 HELIX 25 25 SER A 747 TYR A 766 1 20 HELIX 26 26 ARG A 769 VAL A 783 1 15 HELIX 27 27 ASP A 808 ILE A 818 1 11 HELIX 28 28 THR A 832 VAL A 836 5 5 HELIX 29 29 GLY A 840 CYS A 847 1 8 HELIX 30 30 LEU A 853 GLY A 875 1 23 SHEET 1 A 4 ALA A 303 GLU A 309 0 SHEET 2 A 4 GLY A 586 ARG A 594 -1 O ILE A 591 N HIS A 305 SHEET 3 A 4 LYS A 575 THR A 583 -1 N VAL A 579 O ASP A 590 SHEET 4 A 4 TYR A 451 ASN A 452 1 N TYR A 451 O LYS A 578 SHEET 1 B 2 MET A 319 ILE A 320 0 SHEET 2 B 2 ILE A 740 SER A 741 -1 O SER A 741 N MET A 319 SHEET 1 C 2 MET A 658 SER A 661 0 SHEET 2 C 2 ASP A 664 VAL A 667 -1 O ASP A 664 N SER A 661 SHEET 1 D 2 HIS A 712 ILE A 717 0 SHEET 2 D 2 LYS A 723 CYS A 728 -1 O LEU A 724 N LEU A 716 LINK OE1 GLU A 437 ZN ZN A1002 1555 1555 2.18 LINK NE2 HIS A 441 ZN ZN A1002 1555 1555 2.08 LINK SG CYS A 446 ZN ZN A1002 1555 1555 2.28 LINK SG CYS A 449 ZN ZN A1002 1555 1555 2.17 LINK NE2 HIS A 712 ZN ZN A1001 1555 1555 2.05 LINK NE2 HIS A 714 ZN ZN A1001 1555 1555 2.04 LINK SG CYS A 728 ZN ZN A1001 1555 1555 2.33 LINK SG CYS A 847 ZN ZN A1001 1555 1555 2.31 SITE 1 AC1 4 HIS A 712 HIS A 714 CYS A 728 CYS A 847 SITE 1 AC2 4 GLU A 437 HIS A 441 CYS A 446 CYS A 449 SITE 1 AC3 7 GLN A 705 HIS A 711 HIS A 712 TRP A 846 SITE 2 AC3 7 HOH A1517 HOH A1548 HOH A1603 SITE 1 AC4 4 ASN A 635 HIS A 637 HOH A1445 HOH A1758 SITE 1 AC5 3 ASP A 826 HOH A1144 HOH A1642 SITE 1 AC6 2 PRO A 822 TRP A 823 CRYST1 161.320 177.610 57.820 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006199 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005630 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017295 0.00000