data_4HIK # _entry.id 4HIK # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.287 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4HIK NDB NA2083 RCSB RCSB075510 WWPDB D_1000075510 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 4HIO 'The same protein bound to a different ssDNA sequence' unspecified PDB 4HIK 'The same protein bound to a different ssDNA sequence' unspecified PDB 4HIM 'The same protein bound to a different ssDNA sequence' unspecified PDB 4HJ5 'The same protein bound to a different ssDNA sequence' unspecified PDB 4HJ7 'The same protein bound to a different ssDNA sequence' unspecified PDB 4HJ8 'The same protein bound to a different ssDNA sequence' unspecified PDB 4HJ9 'The same protein bound to a different ssDNA sequence' unspecified PDB 4HJA 'The same protein bound to a different ssDNA sequence' unspecified # _pdbx_database_status.entry_id 4HIK _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2012-10-11 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Dickey, T.H.' 1 'Wuttke, D.S.' 2 # _citation.id primary _citation.title 'Nonspecific Recognition Is Achieved in Pot1pC through the Use of Multiple Binding Modes.' _citation.journal_abbrev Structure _citation.journal_volume 21 _citation.page_first 121 _citation.page_last 132 _citation.year 2013 _citation.journal_id_ASTM STRUE6 _citation.country UK _citation.journal_id_ISSN 0969-2126 _citation.journal_id_CSD 2005 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23201273 _citation.pdbx_database_id_DOI 10.1016/j.str.2012.10.015 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Dickey, T.H.' 1 primary 'McKercher, M.A.' 2 primary 'Wuttke, D.S.' 3 # _cell.length_a 44.870 _cell.length_b 57.390 _cell.length_c 66.170 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 4HIK _cell.pdbx_unique_axis ? _cell.Z_PDB 4 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.entry_id 4HIK _symmetry.Int_Tables_number 19 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Protection of telomeres protein 1' 17369.996 1 ? V199D 'Pot1pC, partial DNA binding domain, residues 198-339' ? 2 polymer syn ;DNA (5'-D(*GP*GP*TP*TP*AP*CP*GP*GP*T)-3') ; 2786.833 1 ? ? ? 'telomeric single-stranded DNA' 3 water nat water 18.015 175 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no yes ;(MSE)SDSFSLLSQITPHQRCSFYAQVIKTWYSDKNFTLYVTDYTENELFFP(MSE)SPYTSSSRWRGPFGRFSIRCILW DEHDFYCRNYIKEGDYVV(MSE)KNVRTKIDHLGYLECILHGDSAKRYN(MSE)SIEKVDSEEPELNEIKSRKRLYVQN ; ;MSDSFSLLSQITPHQRCSFYAQVIKTWYSDKNFTLYVTDYTENELFFPMSPYTSSSRWRGPFGRFSIRCILWDEHDFYCR NYIKEGDYVVMKNVRTKIDHLGYLECILHGDSAKRYNMSIEKVDSEEPELNEIKSRKRLYVQN ; A ? 2 polydeoxyribonucleotide no no '(DG)(DG)(DT)(DT)(DA)(DC)(DG)(DG)(DT)' GGTTACGGT B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 SER n 1 3 ASP n 1 4 SER n 1 5 PHE n 1 6 SER n 1 7 LEU n 1 8 LEU n 1 9 SER n 1 10 GLN n 1 11 ILE n 1 12 THR n 1 13 PRO n 1 14 HIS n 1 15 GLN n 1 16 ARG n 1 17 CYS n 1 18 SER n 1 19 PHE n 1 20 TYR n 1 21 ALA n 1 22 GLN n 1 23 VAL n 1 24 ILE n 1 25 LYS n 1 26 THR n 1 27 TRP n 1 28 TYR n 1 29 SER n 1 30 ASP n 1 31 LYS n 1 32 ASN n 1 33 PHE n 1 34 THR n 1 35 LEU n 1 36 TYR n 1 37 VAL n 1 38 THR n 1 39 ASP n 1 40 TYR n 1 41 THR n 1 42 GLU n 1 43 ASN n 1 44 GLU n 1 45 LEU n 1 46 PHE n 1 47 PHE n 1 48 PRO n 1 49 MSE n 1 50 SER n 1 51 PRO n 1 52 TYR n 1 53 THR n 1 54 SER n 1 55 SER n 1 56 SER n 1 57 ARG n 1 58 TRP n 1 59 ARG n 1 60 GLY n 1 61 PRO n 1 62 PHE n 1 63 GLY n 1 64 ARG n 1 65 PHE n 1 66 SER n 1 67 ILE n 1 68 ARG n 1 69 CYS n 1 70 ILE n 1 71 LEU n 1 72 TRP n 1 73 ASP n 1 74 GLU n 1 75 HIS n 1 76 ASP n 1 77 PHE n 1 78 TYR n 1 79 CYS n 1 80 ARG n 1 81 ASN n 1 82 TYR n 1 83 ILE n 1 84 LYS n 1 85 GLU n 1 86 GLY n 1 87 ASP n 1 88 TYR n 1 89 VAL n 1 90 VAL n 1 91 MSE n 1 92 LYS n 1 93 ASN n 1 94 VAL n 1 95 ARG n 1 96 THR n 1 97 LYS n 1 98 ILE n 1 99 ASP n 1 100 HIS n 1 101 LEU n 1 102 GLY n 1 103 TYR n 1 104 LEU n 1 105 GLU n 1 106 CYS n 1 107 ILE n 1 108 LEU n 1 109 HIS n 1 110 GLY n 1 111 ASP n 1 112 SER n 1 113 ALA n 1 114 LYS n 1 115 ARG n 1 116 TYR n 1 117 ASN n 1 118 MSE n 1 119 SER n 1 120 ILE n 1 121 GLU n 1 122 LYS n 1 123 VAL n 1 124 ASP n 1 125 SER n 1 126 GLU n 1 127 GLU n 1 128 PRO n 1 129 GLU n 1 130 LEU n 1 131 ASN n 1 132 GLU n 1 133 ILE n 1 134 LYS n 1 135 SER n 1 136 ARG n 1 137 LYS n 1 138 ARG n 1 139 LEU n 1 140 TYR n 1 141 VAL n 1 142 GLN n 1 143 ASN n 2 1 DG n 2 2 DG n 2 3 DT n 2 4 DT n 2 5 DA n 2 6 DC n 2 7 DG n 2 8 DG n 2 9 DT n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'Fission yeast' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'pot1, SPAC26H5.06' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 972h- _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Schizosaccharomyces pombe' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 284812 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21 (DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pTXB1 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'Schizosaccharomyces pombe' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 284812 _pdbx_entity_src_syn.details ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP POT1_SCHPO O13988 1 ;SVSFSLLSQITPHQRCSFYAQVIKTWYSDKNFTLYVTDYTENELFFPMSPYTSSSRWRGPFGRFSIRCILWDEHDFYCRN YIKEGDYVVMKNVRTKIDHLGYLECILHGDSAKRYNMSIEKVDSEEPELNEIKSRKRLYVQN ; 198 ? 2 PDB 4HIK 4HIK 2 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4HIK A 2 ? 143 ? O13988 198 ? 339 ? 2 143 2 2 4HIK B 1 ? 9 ? 4HIK 1 ? 9 ? 1 9 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4HIK MSE A 1 ? UNP O13988 ? ? 'EXPRESSION TAG' 1 1 1 4HIK ASP A 3 ? UNP O13988 VAL 199 'ENGINEERED MUTATION' 3 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 4HIK _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.12 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 41.93 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 7 _exptl_crystal_grow.temp 290 _exptl_crystal_grow.pdbx_details '25% w/V PEG 4000, 0.2M ammonium formate, pH 7, VAPOR DIFFUSION, HANGING DROP, temperature 290K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.pdbx_collection_date 2011-10-05 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.monochromator 'Double crystal, Si(111)' _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.9799 1.0 2 0.9801 1.0 3 0.9428 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ALS BEAMLINE 8.2.1' _diffrn_source.pdbx_wavelength_list '0.9799, 0.9801, 0.9428' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site ALS _diffrn_source.pdbx_synchrotron_beamline 8.2.1 # _reflns.entry_id 4HIK _reflns.d_resolution_high 1.6360 _reflns.d_resolution_low 50.000 _reflns.number_obs ? _reflns.pdbx_Rmerge_I_obs 0.041 _reflns.pdbx_netI_over_sigmaI 26.400 _reflns.pdbx_chi_squared 2.050 _reflns.pdbx_redundancy 4.500 _reflns.percent_possible_obs 99.100 _reflns.observed_criterion_sigma_F -3 _reflns.observed_criterion_sigma_I -3 _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.640 1.670 ? ? ? 0.134 ? ? 1.403 3.600 ? 1916 93.800 1 1 1.670 1.700 ? ? ? 0.125 ? ? 1.558 3.800 ? 1943 97.400 2 1 1.700 1.730 ? ? ? 0.118 ? ? 1.603 4.000 ? 1965 96.500 3 1 1.730 1.770 ? ? ? 0.105 ? ? 1.577 4.200 ? 1983 99.300 4 1 1.770 1.810 ? ? ? 0.096 ? ? 1.522 4.500 ? 2023 99.600 5 1 1.810 1.850 ? ? ? 0.086 ? ? 1.612 4.700 ? 2022 99.700 6 1 1.850 1.890 ? ? ? 0.078 ? ? 1.893 4.600 ? 2047 99.700 7 1 1.890 1.940 ? ? ? 0.075 ? ? 2.057 4.600 ? 1993 99.800 8 1 1.940 2.000 ? ? ? 0.060 ? ? 1.974 4.600 ? 2031 99.800 9 1 2.000 2.070 ? ? ? 0.056 ? ? 2.138 4.600 ? 2017 99.900 10 1 2.070 2.140 ? ? ? 0.053 ? ? 2.095 4.600 ? 2032 99.700 11 1 2.140 2.230 ? ? ? 0.050 ? ? 2.122 4.700 ? 2016 99.800 12 1 2.230 2.330 ? ? ? 0.047 ? ? 2.232 4.600 ? 2023 99.800 13 1 2.330 2.450 ? ? ? 0.043 ? ? 2.081 4.700 ? 2018 99.900 14 1 2.450 2.600 ? ? ? 0.041 ? ? 2.131 4.700 ? 2026 100.000 15 1 2.600 2.800 ? ? ? 0.043 ? ? 2.547 4.600 ? 2029 100.000 16 1 2.800 3.090 ? ? ? 0.041 ? ? 2.887 4.600 ? 2015 100.000 17 1 3.090 3.530 ? ? ? 0.040 ? ? 3.066 4.600 ? 2019 99.800 18 1 3.530 4.450 ? ? ? 0.032 ? ? 2.567 4.500 ? 2023 99.200 19 1 4.450 50.000 ? ? ? 0.024 ? ? 1.472 4.600 ? 2008 98.500 20 1 # _refine.entry_id 4HIK _refine.ls_d_res_high 1.6360 _refine.ls_d_res_low 35.3480 _refine.pdbx_ls_sigma_F 0.050 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 96.6200 _refine.ls_number_reflns_obs 21007 _refine.ls_number_reflns_all 21007 _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_R_Free_selection_details random _refine.details ? _refine.ls_R_factor_all 0.1947 _refine.ls_R_factor_obs 0.1947 _refine.ls_R_factor_R_work 0.1935 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2157 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 5.0000 _refine.ls_number_reflns_R_free 1051 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 18.4056 _refine.solvent_model_param_bsol 31.9040 _refine.solvent_model_param_ksol 0.3580 _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 4.0568 _refine.aniso_B[2][2] -3.0854 _refine.aniso_B[3][3] -2.9514 _refine.aniso_B[1][2] -0.0000 _refine.aniso_B[1][3] -0.0000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.1900 _refine.overall_SU_B ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 70.030 _refine.B_iso_min 4.690 _refine.pdbx_overall_phase_error 19.5000 _refine.occupancy_max 1.000 _refine.occupancy_min 0.400 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1169 _refine_hist.pdbx_number_atoms_nucleic_acid 185 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 175 _refine_hist.number_atoms_total 1529 _refine_hist.d_res_high 1.6360 _refine_hist.d_res_low 35.3480 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id f_bond_d 1413 0.006 ? ? ? 'X-RAY DIFFRACTION' f_angle_d 1949 1.058 ? ? ? 'X-RAY DIFFRACTION' f_chiral_restr 202 0.075 ? ? ? 'X-RAY DIFFRACTION' f_plane_restr 215 0.004 ? ? ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 536 15.952 ? ? ? 'X-RAY DIFFRACTION' # loop_ _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.percent_reflns_obs _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_R_work _refine_ls_shell.R_factor_R_free _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id 1.6357 1.7101 8 84.0000 2121 . 0.2376 0.2890 . 111 . 2232 . . 'X-RAY DIFFRACTION' 1.7101 1.8003 8 95.0000 2439 . 0.2070 0.2574 . 129 . 2568 . . 'X-RAY DIFFRACTION' 1.8003 1.9131 8 98.0000 2482 . 0.1852 0.2213 . 131 . 2613 . . 'X-RAY DIFFRACTION' 1.9131 2.0608 8 98.0000 2503 . 0.1752 0.1840 . 131 . 2634 . . 'X-RAY DIFFRACTION' 2.0608 2.2681 8 99.0000 2533 . 0.1875 0.2147 . 134 . 2667 . . 'X-RAY DIFFRACTION' 2.2681 2.5963 8 100.0000 2585 . 0.1986 0.2238 . 135 . 2720 . . 'X-RAY DIFFRACTION' 2.5963 3.2706 8 100.0000 2591 . 0.2071 0.2261 . 137 . 2728 . . 'X-RAY DIFFRACTION' 3.2706 35.3567 8 99.0000 2702 . 0.1847 0.1979 . 143 . 2845 . . 'X-RAY DIFFRACTION' # _struct.entry_id 4HIK _struct.title 'Crystal Structure of Schizosaccharomyces pombe Pot1pC bound to ssDNA (GGTTACGGT)' _struct.pdbx_descriptor 'Protection of telomeres protein 1/DNA complex' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4HIK _struct_keywords.text 'specificity, plasticity, promiscuity, OB-fold, ssDNA binding, single-stranded telomeric DNA, DNA BINDING PROTEIN' _struct_keywords.pdbx_keywords 'DNA BINDING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LEU A 7 ? ILE A 11 ? LEU A 7 ILE A 11 5 ? 5 HELX_P HELX_P2 2 TRP A 72 ? ARG A 80 ? TRP A 72 ARG A 80 1 ? 9 HELX_P HELX_P3 3 GLU A 127 ? GLU A 129 ? GLU A 127 GLU A 129 5 ? 3 HELX_P HELX_P4 4 LEU A 130 ? ARG A 138 ? LEU A 130 ARG A 138 1 ? 9 HELX_P HELX_P5 5 LEU A 139 ? VAL A 141 ? LEU A 139 VAL A 141 5 ? 3 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A PRO 48 C ? ? ? 1_555 A MSE 49 N ? ? A PRO 48 A MSE 49 1_555 ? ? ? ? ? ? ? 1.328 ? covale2 covale ? ? A MSE 49 C ? ? ? 1_555 A SER 50 N ? ? A MSE 49 A SER 50 1_555 ? ? ? ? ? ? ? 1.330 ? covale3 covale ? ? A VAL 90 C ? ? ? 1_555 A MSE 91 N ? ? A VAL 90 A MSE 91 1_555 ? ? ? ? ? ? ? 1.325 ? covale4 covale ? ? A MSE 91 C ? ? ? 1_555 A LYS 92 N ? ? A MSE 91 A LYS 92 1_555 ? ? ? ? ? ? ? 1.328 ? covale5 covale ? ? A ASN 117 C ? ? ? 1_555 A MSE 118 N ? ? A ASN 117 A MSE 118 1_555 ? ? ? ? ? ? ? 1.327 ? covale6 covale ? ? A MSE 118 C ? ? ? 1_555 A SER 119 N ? ? A MSE 118 A SER 119 1_555 ? ? ? ? ? ? ? 1.322 ? hydrog1 hydrog ? ? B DT 4 O2 ? ? ? 1_555 B DA 5 N6 ? ? B DT 4 B DA 5 1_555 ? ? ? ? ? ? 'DT-DA PAIR' ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id GLY _struct_mon_prot_cis.label_seq_id 60 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id GLY _struct_mon_prot_cis.auth_seq_id 60 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 61 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 61 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -0.75 # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 7 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 SER A 119 ? VAL A 123 ? SER A 119 VAL A 123 A 2 TYR A 88 ? ILE A 98 ? TYR A 88 ILE A 98 A 3 LEU A 104 ? LEU A 108 ? LEU A 104 LEU A 108 A 4 ILE A 67 ? LEU A 71 ? ILE A 67 LEU A 71 A 5 PHE A 33 ? THR A 38 ? PHE A 33 THR A 38 A 6 ARG A 16 ? TYR A 28 ? ARG A 16 TYR A 28 A 7 TYR A 88 ? ILE A 98 ? TYR A 88 ILE A 98 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O SER A 119 ? O SER A 119 N LYS A 92 ? N LYS A 92 A 2 3 N ARG A 95 ? N ARG A 95 O ILE A 107 ? O ILE A 107 A 3 4 O CYS A 106 ? O CYS A 106 N ILE A 70 ? N ILE A 70 A 4 5 O CYS A 69 ? O CYS A 69 N LEU A 35 ? N LEU A 35 A 5 6 O TYR A 36 ? O TYR A 36 N ILE A 24 ? N ILE A 24 A 6 7 N ALA A 21 ? N ALA A 21 O VAL A 89 ? O VAL A 89 # _atom_sites.entry_id 4HIK _atom_sites.fract_transf_matrix[1][1] 0.022287 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017425 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015113 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O P S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 1 ? ? ? A . n A 1 2 SER 2 2 ? ? ? A . n A 1 3 ASP 3 3 ? ? ? A . n A 1 4 SER 4 4 4 SER SER A . n A 1 5 PHE 5 5 5 PHE PHE A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 LEU 7 7 7 LEU LEU A . n A 1 8 LEU 8 8 8 LEU LEU A . n A 1 9 SER 9 9 9 SER SER A . n A 1 10 GLN 10 10 10 GLN GLN A . n A 1 11 ILE 11 11 11 ILE ILE A . n A 1 12 THR 12 12 12 THR THR A . n A 1 13 PRO 13 13 13 PRO PRO A . n A 1 14 HIS 14 14 14 HIS HIS A . n A 1 15 GLN 15 15 15 GLN GLN A . n A 1 16 ARG 16 16 16 ARG ARG A . n A 1 17 CYS 17 17 17 CYS CYS A . n A 1 18 SER 18 18 18 SER SER A . n A 1 19 PHE 19 19 19 PHE PHE A . n A 1 20 TYR 20 20 20 TYR TYR A . n A 1 21 ALA 21 21 21 ALA ALA A . n A 1 22 GLN 22 22 22 GLN GLN A . n A 1 23 VAL 23 23 23 VAL VAL A . n A 1 24 ILE 24 24 24 ILE ILE A . n A 1 25 LYS 25 25 25 LYS LYS A . n A 1 26 THR 26 26 26 THR THR A . n A 1 27 TRP 27 27 27 TRP TRP A . n A 1 28 TYR 28 28 28 TYR TYR A . n A 1 29 SER 29 29 29 SER SER A . n A 1 30 ASP 30 30 30 ASP ASP A . n A 1 31 LYS 31 31 31 LYS LYS A . n A 1 32 ASN 32 32 32 ASN ASN A . n A 1 33 PHE 33 33 33 PHE PHE A . n A 1 34 THR 34 34 34 THR THR A . n A 1 35 LEU 35 35 35 LEU LEU A . n A 1 36 TYR 36 36 36 TYR TYR A . n A 1 37 VAL 37 37 37 VAL VAL A . n A 1 38 THR 38 38 38 THR THR A . n A 1 39 ASP 39 39 39 ASP ASP A . n A 1 40 TYR 40 40 40 TYR TYR A . n A 1 41 THR 41 41 41 THR THR A . n A 1 42 GLU 42 42 42 GLU GLU A . n A 1 43 ASN 43 43 43 ASN ASN A . n A 1 44 GLU 44 44 44 GLU GLU A . n A 1 45 LEU 45 45 45 LEU LEU A . n A 1 46 PHE 46 46 46 PHE PHE A . n A 1 47 PHE 47 47 47 PHE PHE A . n A 1 48 PRO 48 48 48 PRO PRO A . n A 1 49 MSE 49 49 49 MSE MSE A . n A 1 50 SER 50 50 50 SER SER A . n A 1 51 PRO 51 51 51 PRO PRO A . n A 1 52 TYR 52 52 52 TYR TYR A . n A 1 53 THR 53 53 53 THR THR A . n A 1 54 SER 54 54 54 SER SER A . n A 1 55 SER 55 55 55 SER SER A . n A 1 56 SER 56 56 56 SER SER A . n A 1 57 ARG 57 57 57 ARG ARG A . n A 1 58 TRP 58 58 58 TRP TRP A . n A 1 59 ARG 59 59 59 ARG ARG A . n A 1 60 GLY 60 60 60 GLY GLY A . n A 1 61 PRO 61 61 61 PRO PRO A . n A 1 62 PHE 62 62 62 PHE PHE A . n A 1 63 GLY 63 63 63 GLY GLY A . n A 1 64 ARG 64 64 64 ARG ARG A . n A 1 65 PHE 65 65 65 PHE PHE A . n A 1 66 SER 66 66 66 SER SER A . n A 1 67 ILE 67 67 67 ILE ILE A . n A 1 68 ARG 68 68 68 ARG ARG A . n A 1 69 CYS 69 69 69 CYS CYS A . n A 1 70 ILE 70 70 70 ILE ILE A . n A 1 71 LEU 71 71 71 LEU LEU A . n A 1 72 TRP 72 72 72 TRP TRP A . n A 1 73 ASP 73 73 73 ASP ASP A . n A 1 74 GLU 74 74 74 GLU GLU A . n A 1 75 HIS 75 75 75 HIS HIS A . n A 1 76 ASP 76 76 76 ASP ASP A . n A 1 77 PHE 77 77 77 PHE PHE A . n A 1 78 TYR 78 78 78 TYR TYR A . n A 1 79 CYS 79 79 79 CYS CYS A . n A 1 80 ARG 80 80 80 ARG ARG A . n A 1 81 ASN 81 81 81 ASN ASN A . n A 1 82 TYR 82 82 82 TYR TYR A . n A 1 83 ILE 83 83 83 ILE ILE A . n A 1 84 LYS 84 84 84 LYS LYS A . n A 1 85 GLU 85 85 85 GLU GLU A . n A 1 86 GLY 86 86 86 GLY GLY A . n A 1 87 ASP 87 87 87 ASP ASP A . n A 1 88 TYR 88 88 88 TYR TYR A . n A 1 89 VAL 89 89 89 VAL VAL A . n A 1 90 VAL 90 90 90 VAL VAL A . n A 1 91 MSE 91 91 91 MSE MSE A . n A 1 92 LYS 92 92 92 LYS LYS A . n A 1 93 ASN 93 93 93 ASN ASN A . n A 1 94 VAL 94 94 94 VAL VAL A . n A 1 95 ARG 95 95 95 ARG ARG A . n A 1 96 THR 96 96 96 THR THR A . n A 1 97 LYS 97 97 97 LYS LYS A . n A 1 98 ILE 98 98 98 ILE ILE A . n A 1 99 ASP 99 99 99 ASP ASP A . n A 1 100 HIS 100 100 100 HIS HIS A . n A 1 101 LEU 101 101 101 LEU LEU A . n A 1 102 GLY 102 102 102 GLY GLY A . n A 1 103 TYR 103 103 103 TYR TYR A . n A 1 104 LEU 104 104 104 LEU LEU A . n A 1 105 GLU 105 105 105 GLU GLU A . n A 1 106 CYS 106 106 106 CYS CYS A . n A 1 107 ILE 107 107 107 ILE ILE A . n A 1 108 LEU 108 108 108 LEU LEU A . n A 1 109 HIS 109 109 109 HIS HIS A . n A 1 110 GLY 110 110 110 GLY GLY A . n A 1 111 ASP 111 111 111 ASP ASP A . n A 1 112 SER 112 112 112 SER SER A . n A 1 113 ALA 113 113 113 ALA ALA A . n A 1 114 LYS 114 114 114 LYS LYS A . n A 1 115 ARG 115 115 115 ARG ARG A . n A 1 116 TYR 116 116 116 TYR TYR A . n A 1 117 ASN 117 117 117 ASN ASN A . n A 1 118 MSE 118 118 118 MSE MSE A . n A 1 119 SER 119 119 119 SER SER A . n A 1 120 ILE 120 120 120 ILE ILE A . n A 1 121 GLU 121 121 121 GLU GLU A . n A 1 122 LYS 122 122 122 LYS LYS A . n A 1 123 VAL 123 123 123 VAL VAL A . n A 1 124 ASP 124 124 124 ASP ASP A . n A 1 125 SER 125 125 125 SER SER A . n A 1 126 GLU 126 126 126 GLU GLU A . n A 1 127 GLU 127 127 127 GLU GLU A . n A 1 128 PRO 128 128 128 PRO PRO A . n A 1 129 GLU 129 129 129 GLU GLU A . n A 1 130 LEU 130 130 130 LEU LEU A . n A 1 131 ASN 131 131 131 ASN ASN A . n A 1 132 GLU 132 132 132 GLU GLU A . n A 1 133 ILE 133 133 133 ILE ILE A . n A 1 134 LYS 134 134 134 LYS LYS A . n A 1 135 SER 135 135 135 SER SER A . n A 1 136 ARG 136 136 136 ARG ARG A . n A 1 137 LYS 137 137 137 LYS LYS A . n A 1 138 ARG 138 138 138 ARG ARG A . n A 1 139 LEU 139 139 139 LEU LEU A . n A 1 140 TYR 140 140 140 TYR TYR A . n A 1 141 VAL 141 141 141 VAL VAL A . n A 1 142 GLN 142 142 ? ? ? A . n A 1 143 ASN 143 143 ? ? ? A . n B 2 1 DG 1 1 1 DG G B . n B 2 2 DG 2 2 2 DG G B . n B 2 3 DT 3 3 3 DT T B . n B 2 4 DT 4 4 4 DT T B . n B 2 5 DA 5 5 5 DA A B . n B 2 6 DC 6 6 6 DC C B . n B 2 7 DG 7 7 7 DG G B . n B 2 8 DG 8 8 8 DG G B . n B 2 9 DT 9 9 9 DT T B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 HOH 1 201 2 HOH HOH A . C 3 HOH 2 202 3 HOH HOH A . C 3 HOH 3 203 5 HOH HOH A . C 3 HOH 4 204 6 HOH HOH A . C 3 HOH 5 205 7 HOH HOH A . C 3 HOH 6 206 8 HOH HOH A . C 3 HOH 7 207 9 HOH HOH A . C 3 HOH 8 208 10 HOH HOH A . C 3 HOH 9 209 11 HOH HOH A . C 3 HOH 10 210 12 HOH HOH A . C 3 HOH 11 211 13 HOH HOH A . C 3 HOH 12 212 14 HOH HOH A . C 3 HOH 13 213 15 HOH HOH A . C 3 HOH 14 214 16 HOH HOH A . C 3 HOH 15 215 19 HOH HOH A . C 3 HOH 16 216 20 HOH HOH A . C 3 HOH 17 217 21 HOH HOH A . C 3 HOH 18 218 23 HOH HOH A . C 3 HOH 19 219 24 HOH HOH A . C 3 HOH 20 220 25 HOH HOH A . C 3 HOH 21 221 26 HOH HOH A . C 3 HOH 22 222 28 HOH HOH A . C 3 HOH 23 223 29 HOH HOH A . C 3 HOH 24 224 30 HOH HOH A . C 3 HOH 25 225 31 HOH HOH A . C 3 HOH 26 226 32 HOH HOH A . C 3 HOH 27 227 34 HOH HOH A . C 3 HOH 28 228 35 HOH HOH A . C 3 HOH 29 229 36 HOH HOH A . C 3 HOH 30 230 37 HOH HOH A . C 3 HOH 31 231 38 HOH HOH A . C 3 HOH 32 232 39 HOH HOH A . C 3 HOH 33 233 41 HOH HOH A . C 3 HOH 34 234 42 HOH HOH A . C 3 HOH 35 235 43 HOH HOH A . C 3 HOH 36 236 44 HOH HOH A . C 3 HOH 37 237 46 HOH HOH A . C 3 HOH 38 238 47 HOH HOH A . C 3 HOH 39 239 48 HOH HOH A . C 3 HOH 40 240 49 HOH HOH A . C 3 HOH 41 241 51 HOH HOH A . C 3 HOH 42 242 53 HOH HOH A . C 3 HOH 43 243 55 HOH HOH A . C 3 HOH 44 244 57 HOH HOH A . C 3 HOH 45 245 58 HOH HOH A . C 3 HOH 46 246 61 HOH HOH A . C 3 HOH 47 247 62 HOH HOH A . C 3 HOH 48 248 63 HOH HOH A . C 3 HOH 49 249 64 HOH HOH A . C 3 HOH 50 250 65 HOH HOH A . C 3 HOH 51 251 66 HOH HOH A . C 3 HOH 52 252 67 HOH HOH A . C 3 HOH 53 253 68 HOH HOH A . C 3 HOH 54 254 69 HOH HOH A . C 3 HOH 55 255 70 HOH HOH A . C 3 HOH 56 256 71 HOH HOH A . C 3 HOH 57 257 72 HOH HOH A . C 3 HOH 58 258 73 HOH HOH A . C 3 HOH 59 259 74 HOH HOH A . C 3 HOH 60 260 75 HOH HOH A . C 3 HOH 61 261 76 HOH HOH A . C 3 HOH 62 262 77 HOH HOH A . C 3 HOH 63 263 79 HOH HOH A . C 3 HOH 64 264 81 HOH HOH A . C 3 HOH 65 265 82 HOH HOH A . C 3 HOH 66 266 83 HOH HOH A . C 3 HOH 67 267 85 HOH HOH A . C 3 HOH 68 268 86 HOH HOH A . C 3 HOH 69 269 89 HOH HOH A . C 3 HOH 70 270 90 HOH HOH A . C 3 HOH 71 271 91 HOH HOH A . C 3 HOH 72 272 92 HOH HOH A . C 3 HOH 73 273 93 HOH HOH A . C 3 HOH 74 274 94 HOH HOH A . C 3 HOH 75 275 95 HOH HOH A . C 3 HOH 76 276 96 HOH HOH A . C 3 HOH 77 277 98 HOH HOH A . C 3 HOH 78 278 99 HOH HOH A . C 3 HOH 79 279 100 HOH HOH A . C 3 HOH 80 280 103 HOH HOH A . C 3 HOH 81 281 104 HOH HOH A . C 3 HOH 82 282 105 HOH HOH A . C 3 HOH 83 283 106 HOH HOH A . C 3 HOH 84 284 107 HOH HOH A . C 3 HOH 85 285 108 HOH HOH A . C 3 HOH 86 286 109 HOH HOH A . C 3 HOH 87 287 110 HOH HOH A . C 3 HOH 88 288 111 HOH HOH A . C 3 HOH 89 289 113 HOH HOH A . C 3 HOH 90 290 114 HOH HOH A . C 3 HOH 91 291 115 HOH HOH A . C 3 HOH 92 292 116 HOH HOH A . C 3 HOH 93 293 117 HOH HOH A . C 3 HOH 94 294 118 HOH HOH A . C 3 HOH 95 295 119 HOH HOH A . C 3 HOH 96 296 120 HOH HOH A . C 3 HOH 97 297 121 HOH HOH A . C 3 HOH 98 298 122 HOH HOH A . C 3 HOH 99 299 124 HOH HOH A . C 3 HOH 100 300 125 HOH HOH A . C 3 HOH 101 301 126 HOH HOH A . C 3 HOH 102 302 127 HOH HOH A . C 3 HOH 103 303 128 HOH HOH A . C 3 HOH 104 304 129 HOH HOH A . C 3 HOH 105 305 130 HOH HOH A . C 3 HOH 106 306 131 HOH HOH A . C 3 HOH 107 307 132 HOH HOH A . C 3 HOH 108 308 134 HOH HOH A . C 3 HOH 109 309 135 HOH HOH A . C 3 HOH 110 310 136 HOH HOH A . C 3 HOH 111 311 140 HOH HOH A . C 3 HOH 112 312 141 HOH HOH A . C 3 HOH 113 313 142 HOH HOH A . C 3 HOH 114 314 144 HOH HOH A . C 3 HOH 115 315 145 HOH HOH A . C 3 HOH 116 316 146 HOH HOH A . C 3 HOH 117 317 147 HOH HOH A . C 3 HOH 118 318 148 HOH HOH A . C 3 HOH 119 319 149 HOH HOH A . C 3 HOH 120 320 150 HOH HOH A . C 3 HOH 121 321 151 HOH HOH A . C 3 HOH 122 322 152 HOH HOH A . C 3 HOH 123 323 154 HOH HOH A . C 3 HOH 124 324 155 HOH HOH A . C 3 HOH 125 325 156 HOH HOH A . C 3 HOH 126 326 157 HOH HOH A . C 3 HOH 127 327 158 HOH HOH A . C 3 HOH 128 328 159 HOH HOH A . C 3 HOH 129 329 160 HOH HOH A . C 3 HOH 130 330 161 HOH HOH A . C 3 HOH 131 331 162 HOH HOH A . C 3 HOH 132 332 164 HOH HOH A . C 3 HOH 133 333 165 HOH HOH A . C 3 HOH 134 334 166 HOH HOH A . C 3 HOH 135 335 167 HOH HOH A . C 3 HOH 136 336 168 HOH HOH A . C 3 HOH 137 337 169 HOH HOH A . C 3 HOH 138 338 170 HOH HOH A . C 3 HOH 139 339 171 HOH HOH A . C 3 HOH 140 340 172 HOH HOH A . C 3 HOH 141 341 173 HOH HOH A . C 3 HOH 142 342 174 HOH HOH A . C 3 HOH 143 343 175 HOH HOH A . D 3 HOH 1 101 1 HOH HOH B . D 3 HOH 2 102 4 HOH HOH B . D 3 HOH 3 103 17 HOH HOH B . D 3 HOH 4 104 18 HOH HOH B . D 3 HOH 5 105 22 HOH HOH B . D 3 HOH 6 106 27 HOH HOH B . D 3 HOH 7 107 33 HOH HOH B . D 3 HOH 8 108 40 HOH HOH B . D 3 HOH 9 109 45 HOH HOH B . D 3 HOH 10 110 50 HOH HOH B . D 3 HOH 11 111 52 HOH HOH B . D 3 HOH 12 112 54 HOH HOH B . D 3 HOH 13 113 56 HOH HOH B . D 3 HOH 14 114 59 HOH HOH B . D 3 HOH 15 115 60 HOH HOH B . D 3 HOH 16 116 78 HOH HOH B . D 3 HOH 17 117 80 HOH HOH B . D 3 HOH 18 118 84 HOH HOH B . D 3 HOH 19 119 87 HOH HOH B . D 3 HOH 20 120 88 HOH HOH B . D 3 HOH 21 121 97 HOH HOH B . D 3 HOH 22 122 101 HOH HOH B . D 3 HOH 23 123 102 HOH HOH B . D 3 HOH 24 124 112 HOH HOH B . D 3 HOH 25 125 123 HOH HOH B . D 3 HOH 26 126 133 HOH HOH B . D 3 HOH 27 127 137 HOH HOH B . D 3 HOH 28 128 138 HOH HOH B . D 3 HOH 29 129 139 HOH HOH B . D 3 HOH 30 130 143 HOH HOH B . D 3 HOH 31 131 153 HOH HOH B . D 3 HOH 32 132 163 HOH HOH B . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 49 A MSE 49 ? MET SELENOMETHIONINE 2 A MSE 91 A MSE 91 ? MET SELENOMETHIONINE 3 A MSE 118 A MSE 118 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2070 ? 1 MORE -7 ? 1 'SSA (A^2)' 8660 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-12-12 2 'Structure model' 1 1 2013-02-27 3 'Structure model' 1 2 2017-11-15 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Refinement description' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 3 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category software # _diffrn_reflns.diffrn_id 1 _diffrn_reflns.pdbx_d_res_high 1.640 _diffrn_reflns.pdbx_d_res_low 50.000 _diffrn_reflns.pdbx_number_obs 40149 _diffrn_reflns.pdbx_Rmerge_I_obs 0.041 _diffrn_reflns.pdbx_Rsym_value ? _diffrn_reflns.pdbx_chi_squared 2.05 _diffrn_reflns.av_sigmaI_over_netI 50.20 _diffrn_reflns.pdbx_redundancy 4.50 _diffrn_reflns.pdbx_percent_possible_obs 99.10 _diffrn_reflns.number 179702 _diffrn_reflns.pdbx_observed_criterion ? _diffrn_reflns.limit_h_max ? _diffrn_reflns.limit_h_min ? _diffrn_reflns.limit_k_max ? _diffrn_reflns.limit_k_min ? _diffrn_reflns.limit_l_max ? _diffrn_reflns.limit_l_min ? # loop_ _pdbx_diffrn_reflns_shell.diffrn_id _pdbx_diffrn_reflns_shell.d_res_high _pdbx_diffrn_reflns_shell.d_res_low _pdbx_diffrn_reflns_shell.number_obs _pdbx_diffrn_reflns_shell.rejects _pdbx_diffrn_reflns_shell.Rmerge_I_obs _pdbx_diffrn_reflns_shell.Rsym_value _pdbx_diffrn_reflns_shell.chi_squared _pdbx_diffrn_reflns_shell.redundancy _pdbx_diffrn_reflns_shell.percent_possible_obs 1 4.45 50.00 ? ? 0.024 ? 1.472 4.60 98.50 1 3.53 4.45 ? ? 0.032 ? 2.567 4.50 99.20 1 3.09 3.53 ? ? 0.040 ? 3.066 4.60 99.80 1 2.80 3.09 ? ? 0.041 ? 2.887 4.60 100.00 1 2.60 2.80 ? ? 0.043 ? 2.547 4.60 100.00 1 2.45 2.60 ? ? 0.041 ? 2.131 4.70 100.00 1 2.33 2.45 ? ? 0.043 ? 2.081 4.70 99.90 1 2.23 2.33 ? ? 0.047 ? 2.232 4.60 99.80 1 2.14 2.23 ? ? 0.050 ? 2.122 4.70 99.80 1 2.07 2.14 ? ? 0.053 ? 2.095 4.60 99.70 1 2.00 2.07 ? ? 0.056 ? 2.138 4.60 99.90 1 1.94 2.00 ? ? 0.060 ? 1.974 4.60 99.80 1 1.89 1.94 ? ? 0.075 ? 2.057 4.60 99.80 1 1.85 1.89 ? ? 0.078 ? 1.893 4.60 99.70 1 1.81 1.85 ? ? 0.086 ? 1.612 4.70 99.70 1 1.77 1.81 ? ? 0.096 ? 1.522 4.50 99.60 1 1.73 1.77 ? ? 0.105 ? 1.577 4.20 99.30 1 1.70 1.73 ? ? 0.118 ? 1.603 4.00 96.50 1 1.67 1.70 ? ? 0.125 ? 1.558 3.80 97.40 1 1.64 1.67 ? ? 0.134 ? 1.403 3.60 93.80 # loop_ _pdbx_phasing_MAD_set.id _pdbx_phasing_MAD_set.d_res_low _pdbx_phasing_MAD_set.d_res_high _pdbx_phasing_MAD_set.fom_centric _pdbx_phasing_MAD_set.fom_acentric _pdbx_phasing_MAD_set.fom _pdbx_phasing_MAD_set.R_cullis_centric _pdbx_phasing_MAD_set.R_kraut_acentric _pdbx_phasing_MAD_set.power PK_iso 1.74 5.74 0.376 0.247 0.263 0.641 0.035 1.130 IP_iso 1.74 5.74 0.512 0.359 0.377 0.530 0.023 1.760 # _phasing.method MAD # _phasing_MAD.entry_id 4HIK _phasing_MAD.pdbx_d_res_high 1.74 _phasing_MAD.pdbx_d_res_low 5.74 _phasing_MAD.pdbx_fom 0.704 _phasing_MAD.pdbx_reflns 17982 # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 DENZO . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data reduction' http://www.hkl-xray.com/ ? ? 2 SCALEPACK . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 3 SnB . ? package 'Charles M. Weeks' bnp-help@hwi.buffalo.edu phasing http://www.hwi.buffalo.edu/BnP/ 'Java & Fortran' ? 4 PHENIX 1.7_650 ? package 'Paul D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 5 PDB_EXTRACT 3.11 'April 22, 2011' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 6 HKL-2000 . ? ? ? ? 'data collection' ? ? ? 7 HKL-2000 . ? ? ? ? 'data reduction' ? ? ? 8 HKL-2000 . ? ? ? ? 'data scaling' ? ? ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 338 ? ? O A HOH 340 ? ? 2.01 2 1 O A HOH 210 ? ? O A HOH 333 ? ? 2.15 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 73 ? ? 56.22 -131.53 2 1 TYR A 82 ? ? -130.33 -56.05 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MSE 1 ? A MSE 1 2 1 Y 1 A SER 2 ? A SER 2 3 1 Y 1 A ASP 3 ? A ASP 3 4 1 Y 1 A GLN 142 ? A GLN 142 5 1 Y 1 A ASN 143 ? A ASN 143 # _ndb_struct_conf_na.entry_id 4HIK _ndb_struct_conf_na.feature 'double helix' # _ndb_struct_na_base_pair.model_number 1 _ndb_struct_na_base_pair.i_label_asym_id B _ndb_struct_na_base_pair.i_label_comp_id DT _ndb_struct_na_base_pair.i_label_seq_id 4 _ndb_struct_na_base_pair.i_symmetry 1_555 _ndb_struct_na_base_pair.j_label_asym_id B _ndb_struct_na_base_pair.j_label_comp_id DA _ndb_struct_na_base_pair.j_label_seq_id 5 _ndb_struct_na_base_pair.j_symmetry 1_555 _ndb_struct_na_base_pair.shear 5.283 _ndb_struct_na_base_pair.stretch 0.419 _ndb_struct_na_base_pair.stagger -0.524 _ndb_struct_na_base_pair.buckle -27.739 _ndb_struct_na_base_pair.propeller 22.711 _ndb_struct_na_base_pair.opening -9.119 _ndb_struct_na_base_pair.pair_number 1 _ndb_struct_na_base_pair.pair_name B_DT4:DA5_B _ndb_struct_na_base_pair.i_auth_asym_id B _ndb_struct_na_base_pair.i_auth_seq_id 4 _ndb_struct_na_base_pair.i_PDB_ins_code ? _ndb_struct_na_base_pair.j_auth_asym_id B _ndb_struct_na_base_pair.j_auth_seq_id 5 _ndb_struct_na_base_pair.j_PDB_ins_code ? _ndb_struct_na_base_pair.hbond_type_28 ? _ndb_struct_na_base_pair.hbond_type_12 ? # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #