data_4HKW # _entry.id 4HKW # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.329 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4HKW RCSB RCSB075593 WWPDB D_1000075593 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4HKW _pdbx_database_status.recvd_initial_deposition_date 2012-10-15 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kovalevsky, A.Y.' 1 'Wan, Q.' 2 'Langan, P.' 3 'Coates, L.' 4 # _citation.id primary _citation.title 'X-ray crystallographic studies of family 11 xylanase Michaelis and product complexes: implications for the catalytic mechanism.' _citation.journal_abbrev 'Acta Crystallogr.,Sect.D' _citation.journal_volume 70 _citation.page_first 11 _citation.page_last 23 _citation.year 2014 _citation.journal_id_ASTM ABCRE6 _citation.country DK _citation.journal_id_ISSN 0907-4449 _citation.journal_id_CSD 0766 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 24419374 _citation.pdbx_database_id_DOI 10.1107/S1399004713023626 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Wan, Q.' 1 ? primary 'Zhang, Q.' 2 ? primary 'Hamilton-Brehm, S.' 3 ? primary 'Weiss, K.' 4 ? primary 'Mustyakimov, M.' 5 ? primary 'Coates, L.' 6 ? primary 'Langan, P.' 7 ? primary 'Graham, D.' 8 ? primary 'Kovalevsky, A.' 9 ? # _cell.entry_id 4HKW _cell.length_a 41.879 _cell.length_b 38.428 _cell.length_c 56.315 _cell.angle_alpha 90.00 _cell.angle_beta 105.93 _cell.angle_gamma 90.00 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4HKW _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'Endo-1,4-beta-xylanase 2' 20838.436 1 3.2.1.8 ? ? ? 2 branched man 'beta-D-xylopyranose-(1-4)-beta-D-xylopyranose-(1-4)-alpha-D-xylopyranose' 414.360 1 ? ? ? ? 3 branched man 'beta-D-xylopyranose-(1-4)-beta-D-xylopyranose' 282.245 1 ? ? ? ? 4 non-polymer syn 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL 122.143 1 ? ? ? ? 5 non-polymer syn 'CALCIUM ION' 40.078 1 ? ? ? ? 6 water nat water 18.015 248 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 'Xylanase 2, 1,4-beta-D-xylan xylanohydrolase 2' 3 4beta-beta-xylobiose # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(PCA)TIQPGTGYNNGYFYSYWNDGHGGVTYTNGPGGQFSVNWSNSGNFVGGKGWQPGTKNKVINFSGSYNPNGNSYLSV YGWSRNPLIEYYIVENFGTYNPSTGATKLGEVTSDGSVYDIYRTQRVNQPSIIGTATFYQYWSVRRNHRSSGSVNTANHF NAWAQQGLTLGTMDYQIVAVEGYFSSGSASITVS ; _entity_poly.pdbx_seq_one_letter_code_can ;QTIQPGTGYNNGYFYSYWNDGHGGVTYTNGPGGQFSVNWSNSGNFVGGKGWQPGTKNKVINFSGSYNPNGNSYLSVYGWS RNPLIEYYIVENFGTYNPSTGATKLGEVTSDGSVYDIYRTQRVNQPSIIGTATFYQYWSVRRNHRSSGSVNTANHFNAWA QQGLTLGTMDYQIVAVEGYFSSGSASITVS ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 PCA n 1 2 THR n 1 3 ILE n 1 4 GLN n 1 5 PRO n 1 6 GLY n 1 7 THR n 1 8 GLY n 1 9 TYR n 1 10 ASN n 1 11 ASN n 1 12 GLY n 1 13 TYR n 1 14 PHE n 1 15 TYR n 1 16 SER n 1 17 TYR n 1 18 TRP n 1 19 ASN n 1 20 ASP n 1 21 GLY n 1 22 HIS n 1 23 GLY n 1 24 GLY n 1 25 VAL n 1 26 THR n 1 27 TYR n 1 28 THR n 1 29 ASN n 1 30 GLY n 1 31 PRO n 1 32 GLY n 1 33 GLY n 1 34 GLN n 1 35 PHE n 1 36 SER n 1 37 VAL n 1 38 ASN n 1 39 TRP n 1 40 SER n 1 41 ASN n 1 42 SER n 1 43 GLY n 1 44 ASN n 1 45 PHE n 1 46 VAL n 1 47 GLY n 1 48 GLY n 1 49 LYS n 1 50 GLY n 1 51 TRP n 1 52 GLN n 1 53 PRO n 1 54 GLY n 1 55 THR n 1 56 LYS n 1 57 ASN n 1 58 LYS n 1 59 VAL n 1 60 ILE n 1 61 ASN n 1 62 PHE n 1 63 SER n 1 64 GLY n 1 65 SER n 1 66 TYR n 1 67 ASN n 1 68 PRO n 1 69 ASN n 1 70 GLY n 1 71 ASN n 1 72 SER n 1 73 TYR n 1 74 LEU n 1 75 SER n 1 76 VAL n 1 77 TYR n 1 78 GLY n 1 79 TRP n 1 80 SER n 1 81 ARG n 1 82 ASN n 1 83 PRO n 1 84 LEU n 1 85 ILE n 1 86 GLU n 1 87 TYR n 1 88 TYR n 1 89 ILE n 1 90 VAL n 1 91 GLU n 1 92 ASN n 1 93 PHE n 1 94 GLY n 1 95 THR n 1 96 TYR n 1 97 ASN n 1 98 PRO n 1 99 SER n 1 100 THR n 1 101 GLY n 1 102 ALA n 1 103 THR n 1 104 LYS n 1 105 LEU n 1 106 GLY n 1 107 GLU n 1 108 VAL n 1 109 THR n 1 110 SER n 1 111 ASP n 1 112 GLY n 1 113 SER n 1 114 VAL n 1 115 TYR n 1 116 ASP n 1 117 ILE n 1 118 TYR n 1 119 ARG n 1 120 THR n 1 121 GLN n 1 122 ARG n 1 123 VAL n 1 124 ASN n 1 125 GLN n 1 126 PRO n 1 127 SER n 1 128 ILE n 1 129 ILE n 1 130 GLY n 1 131 THR n 1 132 ALA n 1 133 THR n 1 134 PHE n 1 135 TYR n 1 136 GLN n 1 137 TYR n 1 138 TRP n 1 139 SER n 1 140 VAL n 1 141 ARG n 1 142 ARG n 1 143 ASN n 1 144 HIS n 1 145 ARG n 1 146 SER n 1 147 SER n 1 148 GLY n 1 149 SER n 1 150 VAL n 1 151 ASN n 1 152 THR n 1 153 ALA n 1 154 ASN n 1 155 HIS n 1 156 PHE n 1 157 ASN n 1 158 ALA n 1 159 TRP n 1 160 ALA n 1 161 GLN n 1 162 GLN n 1 163 GLY n 1 164 LEU n 1 165 THR n 1 166 LEU n 1 167 GLY n 1 168 THR n 1 169 MET n 1 170 ASP n 1 171 TYR n 1 172 GLN n 1 173 ILE n 1 174 VAL n 1 175 ALA n 1 176 VAL n 1 177 GLU n 1 178 GLY n 1 179 TYR n 1 180 PHE n 1 181 SER n 1 182 SER n 1 183 GLY n 1 184 SER n 1 185 ALA n 1 186 SER n 1 187 ILE n 1 188 THR n 1 189 VAL n 1 190 SER n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name ? _entity_src_nat.pdbx_organism_scientific 'Trichoderma reesei' _entity_src_nat.pdbx_ncbi_taxonomy_id 51453 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code XYN2_HYPJE _struct_ref.pdbx_db_accession P36217 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;TIQPGTGYNNGYFYSYWNDGHGGVTYTNGPGGQFSVNWSNSGNFVGGKGWQPGTKNKVINFSGSYNPNGNSYLSVYGWSR NPLIEYYIVENFGTYNPSTGATKLGEVTSDGSVYDIYRTQRVNQPSIIGTATFYQYWSVRRNHRSSGSVNTANHFNAWAQ QGLTLGTMDYQIVAVEGYFSSGSASITVS ; _struct_ref.pdbx_align_begin 34 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4HKW _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 190 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P36217 _struct_ref_seq.db_align_beg 34 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 222 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 2 _struct_ref_seq.pdbx_auth_seq_align_end 190 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 4HKW _struct_ref_seq_dif.mon_id PCA _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code P36217 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'expression tag' _struct_ref_seq_dif.pdbx_auth_seq_num 1 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PCA 'L-peptide linking' n 'PYROGLUTAMIC ACID' ? 'C5 H7 N O3' 129.114 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TRS non-polymer . 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL 'TRIS BUFFER' 'C4 H12 N O3 1' 122.143 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 XYP 'D-saccharide, beta linking' . beta-D-xylopyranose ? 'C5 H10 O5' 150.130 XYS 'D-saccharide, alpha linking' . alpha-D-xylopyranose ? 'C5 H10 O5' 150.130 # _exptl.entry_id 4HKW _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.09 _exptl_crystal.density_percent_sol 41.18 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.pdbx_details '0.1M TRIS, 0.1M CaCl2, pH=8.5, 15% PEG4000, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IV++' _diffrn_detector.pdbx_collection_date 2012-06-01 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator none _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5417 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU MICROMAX-007 HF' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.5417 # _reflns.entry_id 4HKW _reflns.observed_criterion_sigma_I 2 _reflns.observed_criterion_sigma_F 4 _reflns.d_resolution_low 40 _reflns.d_resolution_high 1.65 _reflns.number_obs 16432 _reflns.number_all 19614 _reflns.percent_possible_obs 84 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _refine.entry_id 4HKW _refine.ls_number_reflns_obs 16432 _refine.ls_number_reflns_all 18694 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 10.00 _refine.ls_d_res_high 1.65 _refine.ls_percent_reflns_obs 89.8 _refine.ls_R_factor_obs 0.1587 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1554 _refine.ls_R_factor_R_free 0.2191 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free 944 _refine.ls_number_parameters 7135 _refine.ls_number_restraints 6377 _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method 'FREE R' _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'ENGH AND HUBER' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 4HKW _refine_analyze.Luzzati_coordinate_error_obs ? _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues 0 _refine_analyze.occupancy_sum_hydrogen 0.00 _refine_analyze.occupancy_sum_non_hydrogen 1778.00 _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1480 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 55 _refine_hist.number_atoms_solvent 248 _refine_hist.number_atoms_total 1783 _refine_hist.d_res_high 1.65 _refine_hist.d_res_low 10.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id s_bond_d 0.008 ? ? ? ? 'X-RAY DIFFRACTION' s_angle_d 0.025 ? ? ? ? 'X-RAY DIFFRACTION' s_similar_dist 0.000 ? ? ? ? 'X-RAY DIFFRACTION' s_from_restr_planes 0.0322 ? ? ? ? 'X-RAY DIFFRACTION' s_zero_chiral_vol 0.047 ? ? ? ? 'X-RAY DIFFRACTION' s_non_zero_chiral_vol 0.062 ? ? ? ? 'X-RAY DIFFRACTION' s_anti_bump_dis_restr 0.044 ? ? ? ? 'X-RAY DIFFRACTION' s_rigid_bond_adp_cmpnt 0.000 ? ? ? ? 'X-RAY DIFFRACTION' s_similar_adp_cmpnt 0.057 ? ? ? ? 'X-RAY DIFFRACTION' s_approx_iso_adps 0.000 ? ? ? ? 'X-RAY DIFFRACTION' # _pdbx_refine.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine.entry_id 4HKW _pdbx_refine.R_factor_all_no_cutoff 0.1587 _pdbx_refine.R_factor_obs_no_cutoff ? _pdbx_refine.free_R_factor_no_cutoff ? _pdbx_refine.free_R_error_no_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_no_cutoff ? _pdbx_refine.free_R_val_test_set_ct_no_cutoff ? _pdbx_refine.R_factor_all_4sig_cutoff 0.1454 _pdbx_refine.R_factor_obs_4sig_cutoff ? _pdbx_refine.free_R_factor_4sig_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff ? _pdbx_refine.free_R_val_test_set_ct_4sig_cutoff ? _pdbx_refine.number_reflns_obs_4sig_cutoff 16432 # _struct.entry_id 4HKW _struct.title 'Crystal Structures of Mutant Endo-beta-1,4-xylanase II Complexed with Substrate and Products' _struct.pdbx_descriptor 'Endo-1,4-beta-xylanase 2 (E.C.3.2.1.8)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4HKW _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text 'xylanase II, xylopentaose, induced fit mechanism, oxocarbenium ion, glycosidase, HYDROLASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 6 ? # _struct_biol.id 1 _struct_biol.details ? # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id 1 _struct_conf.beg_label_comp_id THR _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 152 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id GLN _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 162 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id THR _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 152 _struct_conf.end_auth_comp_id GLN _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 162 _struct_conf.pdbx_PDB_helix_class 1 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A PCA 1 C ? ? ? 1_555 A THR 2 N ? ? A PCA 1 A THR 2 1_555 ? ? ? ? ? ? ? 1.321 ? ? covale2 covale one ? D TRS . O1 ? ? ? 1_555 C XYP . C1 ? ? A TRS 406 C XYP 1 1_555 ? ? ? ? ? ? ? 1.438 ? ? covale3 covale one ? B XYS . O4 ? ? ? 1_555 B XYP . C1 ? ? B XYS 1 B XYP 2 1_555 ? ? ? ? ? ? ? 1.443 ? ? covale4 covale one ? B XYP . O4 ? ? ? 1_555 B XYP . C1 ? ? B XYP 2 B XYP 3 1_555 ? ? ? ? ? ? ? 1.435 ? ? covale5 covale one ? C XYP . O4 ? ? ? 1_555 C XYP . C1 ? ? C XYP 1 C XYP 2 1_555 ? ? ? ? ? ? ? 1.432 ? ? metalc1 metalc ? ? A ASN 92 OD1 ? ? ? 1_555 E CA . CA ? ? A ASN 92 A CA 407 1_555 ? ? ? ? ? ? ? 2.461 ? ? metalc2 metalc ? ? A PHE 93 O ? ? ? 1_555 E CA . CA ? ? A PHE 93 A CA 407 1_555 ? ? ? ? ? ? ? 2.436 ? ? metalc3 metalc ? ? E CA . CA ? ? ? 1_555 F HOH . O ? ? A CA 407 A HOH 1096 1_555 ? ? ? ? ? ? ? 2.552 ? ? metalc4 metalc ? ? E CA . CA ? ? ? 1_555 F HOH . O ? ? A CA 407 A HOH 1101 1_555 ? ? ? ? ? ? ? 2.525 ? ? metalc5 metalc ? ? E CA . CA ? ? ? 1_555 F HOH . O ? ? A CA 407 A HOH 1108 1_555 ? ? ? ? ? ? ? 2.391 ? ? metalc6 metalc ? ? E CA . CA ? ? ? 1_555 F HOH . O ? ? A CA 407 A HOH 1181 1_555 ? ? ? ? ? ? ? 2.633 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 GLN 52 A . ? GLN 52 A PRO 53 A ? PRO 53 A 1 -3.58 2 ASN 82 A . ? ASN 82 A PRO 83 A ? PRO 83 A 1 1.95 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 9 ? B ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? parallel A 7 8 ? anti-parallel A 8 9 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLY A 6 ? ASN A 10 ? GLY A 6 ASN A 10 A 2 TYR A 13 ? ASN A 19 ? TYR A 13 ASN A 19 A 3 ASN A 44 ? TRP A 51 ? ASN A 44 TRP A 51 A 4 THR A 168 ? TYR A 179 ? THR A 168 TYR A 179 A 5 SER A 72 ? ARG A 81 ? SER A 72 ARG A 81 A 6 ILE A 85 ? PHE A 93 ? ILE A 85 PHE A 93 A 7 ALA A 132 ? ARG A 141 ? ALA A 132 ARG A 141 A 8 SER A 113 ? GLN A 125 ? SER A 113 GLN A 125 A 9 LYS A 104 ? SER A 110 ? LYS A 104 SER A 110 B 1 VAL A 25 ? ASN A 29 ? VAL A 25 ASN A 29 B 2 GLN A 34 ? TRP A 39 ? GLN A 34 TRP A 39 B 3 SER A 182 ? SER A 190 ? SER A 182 SER A 190 B 4 VAL A 59 ? ASN A 69 ? VAL A 59 ASN A 69 B 5 GLY A 148 ? ASN A 151 ? GLY A 148 ASN A 151 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ASN A 10 ? N ASN A 10 O TYR A 13 ? O TYR A 13 A 2 3 N TRP A 18 ? N TRP A 18 O VAL A 46 ? O VAL A 46 A 3 4 N TRP A 51 ? N TRP A 51 O GLN A 172 ? O GLN A 172 A 4 5 O ASP A 170 ? O ASP A 170 N TRP A 79 ? N TRP A 79 A 5 6 N VAL A 76 ? N VAL A 76 O ILE A 89 ? O ILE A 89 A 6 7 N VAL A 90 ? N VAL A 90 O SER A 139 ? O SER A 139 A 7 8 O PHE A 134 ? O PHE A 134 N ARG A 122 ? N ARG A 122 A 8 9 O ILE A 117 ? O ILE A 117 N LEU A 105 ? N LEU A 105 B 1 2 N THR A 28 ? N THR A 28 O SER A 36 ? O SER A 36 B 2 3 N TRP A 39 ? N TRP A 39 O GLY A 183 ? O GLY A 183 B 3 4 O SER A 190 ? O SER A 190 N ASN A 61 ? N ASN A 61 B 4 5 N PHE A 62 ? N PHE A 62 O GLY A 148 ? O GLY A 148 # _database_PDB_matrix.entry_id 4HKW _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.000000 _database_PDB_matrix.origx_vector[2] 0.000000 _database_PDB_matrix.origx_vector[3] 0.000000 # _atom_sites.entry_id 4HKW _atom_sites.fract_transf_matrix[1][1] 0.023878 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.006815 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.026023 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.018466 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C CA N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 PCA 1 1 1 PCA PCA A . n A 1 2 THR 2 2 2 THR THR A . n A 1 3 ILE 3 3 3 ILE ILE A . n A 1 4 GLN 4 4 4 GLN GLN A . n A 1 5 PRO 5 5 5 PRO PRO A . n A 1 6 GLY 6 6 6 GLY GLY A . n A 1 7 THR 7 7 7 THR THR A . n A 1 8 GLY 8 8 8 GLY GLY A . n A 1 9 TYR 9 9 9 TYR TYR A . n A 1 10 ASN 10 10 10 ASN ASN A . n A 1 11 ASN 11 11 11 ASN ASN A . n A 1 12 GLY 12 12 12 GLY GLY A . n A 1 13 TYR 13 13 13 TYR TYR A . n A 1 14 PHE 14 14 14 PHE PHE A . n A 1 15 TYR 15 15 15 TYR TYR A . n A 1 16 SER 16 16 16 SER SER A . n A 1 17 TYR 17 17 17 TYR TYR A . n A 1 18 TRP 18 18 18 TRP TRP A . n A 1 19 ASN 19 19 19 ASN ASN A . n A 1 20 ASP 20 20 20 ASP ASP A . n A 1 21 GLY 21 21 21 GLY GLY A . n A 1 22 HIS 22 22 22 HIS HIS A . n A 1 23 GLY 23 23 23 GLY GLY A . n A 1 24 GLY 24 24 24 GLY GLY A . n A 1 25 VAL 25 25 25 VAL VAL A . n A 1 26 THR 26 26 26 THR THR A . n A 1 27 TYR 27 27 27 TYR TYR A . n A 1 28 THR 28 28 28 THR THR A . n A 1 29 ASN 29 29 29 ASN ASN A . n A 1 30 GLY 30 30 30 GLY GLY A . n A 1 31 PRO 31 31 31 PRO PRO A . n A 1 32 GLY 32 32 32 GLY GLY A . n A 1 33 GLY 33 33 33 GLY GLY A . n A 1 34 GLN 34 34 34 GLN GLN A . n A 1 35 PHE 35 35 35 PHE PHE A . n A 1 36 SER 36 36 36 SER SER A . n A 1 37 VAL 37 37 37 VAL VAL A . n A 1 38 ASN 38 38 38 ASN ASN A . n A 1 39 TRP 39 39 39 TRP TRP A . n A 1 40 SER 40 40 40 SER SER A . n A 1 41 ASN 41 41 41 ASN ASN A . n A 1 42 SER 42 42 42 SER SER A . n A 1 43 GLY 43 43 43 GLY GLY A . n A 1 44 ASN 44 44 44 ASN ASN A . n A 1 45 PHE 45 45 45 PHE PHE A . n A 1 46 VAL 46 46 46 VAL VAL A . n A 1 47 GLY 47 47 47 GLY GLY A . n A 1 48 GLY 48 48 48 GLY GLY A . n A 1 49 LYS 49 49 49 LYS LYS A . n A 1 50 GLY 50 50 50 GLY GLY A . n A 1 51 TRP 51 51 51 TRP TRP A . n A 1 52 GLN 52 52 52 GLN GLN A . n A 1 53 PRO 53 53 53 PRO PRO A . n A 1 54 GLY 54 54 54 GLY GLY A . n A 1 55 THR 55 55 55 THR THR A . n A 1 56 LYS 56 56 56 LYS LYS A . n A 1 57 ASN 57 57 57 ASN ASN A . n A 1 58 LYS 58 58 58 LYS LYS A . n A 1 59 VAL 59 59 59 VAL VAL A . n A 1 60 ILE 60 60 60 ILE ILE A . n A 1 61 ASN 61 61 61 ASN ASN A . n A 1 62 PHE 62 62 62 PHE PHE A . n A 1 63 SER 63 63 63 SER SER A . n A 1 64 GLY 64 64 64 GLY GLY A . n A 1 65 SER 65 65 65 SER SER A . n A 1 66 TYR 66 66 66 TYR TYR A . n A 1 67 ASN 67 67 67 ASN ASN A . n A 1 68 PRO 68 68 68 PRO PRO A . n A 1 69 ASN 69 69 69 ASN ASN A . n A 1 70 GLY 70 70 70 GLY GLY A . n A 1 71 ASN 71 71 71 ASN ASN A . n A 1 72 SER 72 72 72 SER SER A . n A 1 73 TYR 73 73 73 TYR TYR A . n A 1 74 LEU 74 74 74 LEU LEU A . n A 1 75 SER 75 75 75 SER SER A . n A 1 76 VAL 76 76 76 VAL VAL A . n A 1 77 TYR 77 77 77 TYR TYR A . n A 1 78 GLY 78 78 78 GLY GLY A . n A 1 79 TRP 79 79 79 TRP TRP A . n A 1 80 SER 80 80 80 SER SER A . n A 1 81 ARG 81 81 81 ARG ARG A . n A 1 82 ASN 82 82 82 ASN ASN A . n A 1 83 PRO 83 83 83 PRO PRO A . n A 1 84 LEU 84 84 84 LEU LEU A . n A 1 85 ILE 85 85 85 ILE ILE A . n A 1 86 GLU 86 86 86 GLU GLU A . n A 1 87 TYR 87 87 87 TYR TYR A . n A 1 88 TYR 88 88 88 TYR TYR A . n A 1 89 ILE 89 89 89 ILE ILE A . n A 1 90 VAL 90 90 90 VAL VAL A . n A 1 91 GLU 91 91 91 GLU GLU A . n A 1 92 ASN 92 92 92 ASN ASN A . n A 1 93 PHE 93 93 93 PHE PHE A . n A 1 94 GLY 94 94 94 GLY GLY A . n A 1 95 THR 95 95 95 THR THR A . n A 1 96 TYR 96 96 96 TYR TYR A . n A 1 97 ASN 97 97 97 ASN ASN A . n A 1 98 PRO 98 98 98 PRO PRO A . n A 1 99 SER 99 99 99 SER SER A . n A 1 100 THR 100 100 100 THR THR A . n A 1 101 GLY 101 101 101 GLY GLY A . n A 1 102 ALA 102 102 102 ALA ALA A . n A 1 103 THR 103 103 103 THR THR A . n A 1 104 LYS 104 104 104 LYS LYS A . n A 1 105 LEU 105 105 105 LEU LEU A . n A 1 106 GLY 106 106 106 GLY GLY A . n A 1 107 GLU 107 107 107 GLU GLU A . n A 1 108 VAL 108 108 108 VAL VAL A . n A 1 109 THR 109 109 109 THR THR A . n A 1 110 SER 110 110 110 SER SER A . n A 1 111 ASP 111 111 111 ASP ASP A . n A 1 112 GLY 112 112 112 GLY GLY A . n A 1 113 SER 113 113 113 SER SER A . n A 1 114 VAL 114 114 114 VAL VAL A . n A 1 115 TYR 115 115 115 TYR TYR A . n A 1 116 ASP 116 116 116 ASP ASP A . n A 1 117 ILE 117 117 117 ILE ILE A . n A 1 118 TYR 118 118 118 TYR TYR A . n A 1 119 ARG 119 119 119 ARG ARG A . n A 1 120 THR 120 120 120 THR THR A . n A 1 121 GLN 121 121 121 GLN GLN A . n A 1 122 ARG 122 122 122 ARG ARG A . n A 1 123 VAL 123 123 123 VAL VAL A . n A 1 124 ASN 124 124 124 ASN ASN A . n A 1 125 GLN 125 125 125 GLN GLN A . n A 1 126 PRO 126 126 126 PRO PRO A . n A 1 127 SER 127 127 127 SER SER A . n A 1 128 ILE 128 128 128 ILE ILE A . n A 1 129 ILE 129 129 129 ILE ILE A . n A 1 130 GLY 130 130 130 GLY GLY A . n A 1 131 THR 131 131 131 THR THR A . n A 1 132 ALA 132 132 132 ALA ALA A . n A 1 133 THR 133 133 133 THR THR A . n A 1 134 PHE 134 134 134 PHE PHE A . n A 1 135 TYR 135 135 135 TYR TYR A . n A 1 136 GLN 136 136 136 GLN GLN A . n A 1 137 TYR 137 137 137 TYR TYR A . n A 1 138 TRP 138 138 138 TRP TRP A . n A 1 139 SER 139 139 139 SER SER A . n A 1 140 VAL 140 140 140 VAL VAL A . n A 1 141 ARG 141 141 141 ARG ARG A . n A 1 142 ARG 142 142 142 ARG ARG A . n A 1 143 ASN 143 143 143 ASN ASN A . n A 1 144 HIS 144 144 144 HIS HIS A . n A 1 145 ARG 145 145 145 ARG ARG A . n A 1 146 SER 146 146 146 SER SER A . n A 1 147 SER 147 147 147 SER SER A . n A 1 148 GLY 148 148 148 GLY GLY A . n A 1 149 SER 149 149 149 SER SER A . n A 1 150 VAL 150 150 150 VAL VAL A . n A 1 151 ASN 151 151 151 ASN ASN A . n A 1 152 THR 152 152 152 THR THR A . n A 1 153 ALA 153 153 153 ALA ALA A . n A 1 154 ASN 154 154 154 ASN ASN A . n A 1 155 HIS 155 155 155 HIS HIS A . n A 1 156 PHE 156 156 156 PHE PHE A . n A 1 157 ASN 157 157 157 ASN ASN A . n A 1 158 ALA 158 158 158 ALA ALA A . n A 1 159 TRP 159 159 159 TRP TRP A . n A 1 160 ALA 160 160 160 ALA ALA A . n A 1 161 GLN 161 161 161 GLN GLN A . n A 1 162 GLN 162 162 162 GLN GLN A . n A 1 163 GLY 163 163 163 GLY GLY A . n A 1 164 LEU 164 164 164 LEU LEU A . n A 1 165 THR 165 165 165 THR THR A . n A 1 166 LEU 166 166 166 LEU LEU A . n A 1 167 GLY 167 167 167 GLY GLY A . n A 1 168 THR 168 168 168 THR THR A . n A 1 169 MET 169 169 169 MET MET A . n A 1 170 ASP 170 170 170 ASP ASP A . n A 1 171 TYR 171 171 171 TYR TYR A . n A 1 172 GLN 172 172 172 GLN GLN A . n A 1 173 ILE 173 173 173 ILE ILE A . n A 1 174 VAL 174 174 174 VAL VAL A . n A 1 175 ALA 175 175 175 ALA ALA A . n A 1 176 VAL 176 176 176 VAL VAL A . n A 1 177 GLU 177 177 177 GLU GLU A . n A 1 178 GLY 178 178 178 GLY GLY A . n A 1 179 TYR 179 179 179 TYR TYR A . n A 1 180 PHE 180 180 180 PHE PHE A . n A 1 181 SER 181 181 181 SER SER A . n A 1 182 SER 182 182 182 SER SER A . n A 1 183 GLY 183 183 183 GLY GLY A . n A 1 184 SER 184 184 184 SER SER A . n A 1 185 ALA 185 185 185 ALA ALA A . n A 1 186 SER 186 186 186 SER SER A . n A 1 187 ILE 187 187 187 ILE ILE A . n A 1 188 THR 188 188 188 THR THR A . n A 1 189 VAL 189 189 189 VAL VAL A . n A 1 190 SER 190 190 190 SER SER A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 TRS 1 406 404 TRS TRS A . E 5 CA 1 407 501 CA CA A . F 6 HOH 1 1001 1001 HOH HOH A . F 6 HOH 2 1002 1002 HOH HOH A . F 6 HOH 3 1003 1003 HOH HOH A . F 6 HOH 4 1004 1004 HOH HOH A . F 6 HOH 5 1005 1005 HOH HOH A . F 6 HOH 6 1006 1006 HOH HOH A . F 6 HOH 7 1007 1007 HOH HOH A . F 6 HOH 8 1008 1008 HOH HOH A . F 6 HOH 9 1009 1009 HOH HOH A . F 6 HOH 10 1010 1010 HOH HOH A . F 6 HOH 11 1011 1011 HOH HOH A . F 6 HOH 12 1012 1012 HOH HOH A . F 6 HOH 13 1013 1013 HOH HOH A . F 6 HOH 14 1014 1014 HOH HOH A . F 6 HOH 15 1015 1015 HOH HOH A . F 6 HOH 16 1016 1016 HOH HOH A . F 6 HOH 17 1017 1017 HOH HOH A . F 6 HOH 18 1018 1018 HOH HOH A . F 6 HOH 19 1019 1019 HOH HOH A . F 6 HOH 20 1020 1020 HOH HOH A . F 6 HOH 21 1021 1021 HOH HOH A . F 6 HOH 22 1022 1022 HOH HOH A . F 6 HOH 23 1023 1023 HOH HOH A . F 6 HOH 24 1024 1024 HOH HOH A . F 6 HOH 25 1025 1025 HOH HOH A . F 6 HOH 26 1026 1026 HOH HOH A . F 6 HOH 27 1027 1027 HOH HOH A . F 6 HOH 28 1028 1028 HOH HOH A . F 6 HOH 29 1029 1029 HOH HOH A . F 6 HOH 30 1030 1030 HOH HOH A . F 6 HOH 31 1031 1031 HOH HOH A . F 6 HOH 32 1032 1032 HOH HOH A . F 6 HOH 33 1033 1033 HOH HOH A . F 6 HOH 34 1034 1034 HOH HOH A . F 6 HOH 35 1035 1035 HOH HOH A . F 6 HOH 36 1036 1036 HOH HOH A . F 6 HOH 37 1037 1037 HOH HOH A . F 6 HOH 38 1038 1038 HOH HOH A . F 6 HOH 39 1039 1039 HOH HOH A . F 6 HOH 40 1040 1040 HOH HOH A . F 6 HOH 41 1041 1041 HOH HOH A . F 6 HOH 42 1042 1042 HOH HOH A . F 6 HOH 43 1043 1043 HOH HOH A . F 6 HOH 44 1044 1044 HOH HOH A . F 6 HOH 45 1045 1045 HOH HOH A . F 6 HOH 46 1046 1046 HOH HOH A . F 6 HOH 47 1047 1047 HOH HOH A . F 6 HOH 48 1048 1048 HOH HOH A . F 6 HOH 49 1049 1049 HOH HOH A . F 6 HOH 50 1050 1050 HOH HOH A . F 6 HOH 51 1051 1051 HOH HOH A . F 6 HOH 52 1052 1052 HOH HOH A . F 6 HOH 53 1053 1053 HOH HOH A . F 6 HOH 54 1054 1054 HOH HOH A . F 6 HOH 55 1055 1055 HOH HOH A . F 6 HOH 56 1056 1056 HOH HOH A . F 6 HOH 57 1057 1057 HOH HOH A . F 6 HOH 58 1058 1058 HOH HOH A . F 6 HOH 59 1059 1059 HOH HOH A . F 6 HOH 60 1060 1060 HOH HOH A . F 6 HOH 61 1061 1061 HOH HOH A . F 6 HOH 62 1062 1062 HOH HOH A . F 6 HOH 63 1063 1063 HOH HOH A . F 6 HOH 64 1064 1064 HOH HOH A . F 6 HOH 65 1065 1065 HOH HOH A . F 6 HOH 66 1066 1066 HOH HOH A . F 6 HOH 67 1067 1067 HOH HOH A . F 6 HOH 68 1068 1068 HOH HOH A . F 6 HOH 69 1069 1069 HOH HOH A . F 6 HOH 70 1070 1070 HOH HOH A . F 6 HOH 71 1071 1071 HOH HOH A . F 6 HOH 72 1072 1072 HOH HOH A . F 6 HOH 73 1073 1073 HOH HOH A . F 6 HOH 74 1074 1074 HOH HOH A . F 6 HOH 75 1075 1075 HOH HOH A . F 6 HOH 76 1076 1076 HOH HOH A . F 6 HOH 77 1077 1077 HOH HOH A . F 6 HOH 78 1078 1078 HOH HOH A . F 6 HOH 79 1079 1079 HOH HOH A . F 6 HOH 80 1080 1080 HOH HOH A . F 6 HOH 81 1081 1081 HOH HOH A . F 6 HOH 82 1082 1082 HOH HOH A . F 6 HOH 83 1083 1083 HOH HOH A . F 6 HOH 84 1084 1084 HOH HOH A . F 6 HOH 85 1085 1085 HOH HOH A . F 6 HOH 86 1086 1086 HOH HOH A . F 6 HOH 87 1087 1087 HOH HOH A . F 6 HOH 88 1088 1088 HOH HOH A . F 6 HOH 89 1089 1089 HOH HOH A . F 6 HOH 90 1090 1090 HOH HOH A . F 6 HOH 91 1091 1091 HOH HOH A . F 6 HOH 92 1092 1092 HOH HOH A . F 6 HOH 93 1093 1093 HOH HOH A . F 6 HOH 94 1094 1094 HOH HOH A . F 6 HOH 95 1095 1095 HOH HOH A . F 6 HOH 96 1096 1096 HOH HOH A . F 6 HOH 97 1097 1097 HOH HOH A . F 6 HOH 98 1098 1098 HOH HOH A . F 6 HOH 99 1099 1099 HOH HOH A . F 6 HOH 100 1100 1100 HOH HOH A . F 6 HOH 101 1101 1101 HOH HOH A . F 6 HOH 102 1102 1102 HOH HOH A . F 6 HOH 103 1103 1103 HOH HOH A . F 6 HOH 104 1104 1104 HOH HOH A . F 6 HOH 105 1105 1105 HOH HOH A . F 6 HOH 106 1106 1106 HOH HOH A . F 6 HOH 107 1107 1107 HOH HOH A . F 6 HOH 108 1108 1108 HOH HOH A . F 6 HOH 109 1109 1109 HOH HOH A . F 6 HOH 110 1110 1110 HOH HOH A . F 6 HOH 111 1111 1111 HOH HOH A . F 6 HOH 112 1112 1112 HOH HOH A . F 6 HOH 113 1113 1113 HOH HOH A . F 6 HOH 114 1114 1114 HOH HOH A . F 6 HOH 115 1115 1115 HOH HOH A . F 6 HOH 116 1116 1116 HOH HOH A . F 6 HOH 117 1117 1117 HOH HOH A . F 6 HOH 118 1118 1118 HOH HOH A . F 6 HOH 119 1119 1119 HOH HOH A . F 6 HOH 120 1120 1120 HOH HOH A . F 6 HOH 121 1121 1121 HOH HOH A . F 6 HOH 122 1122 1122 HOH HOH A . F 6 HOH 123 1123 1123 HOH HOH A . F 6 HOH 124 1124 1124 HOH HOH A . F 6 HOH 125 1125 1125 HOH HOH A . F 6 HOH 126 1126 1126 HOH HOH A . F 6 HOH 127 1127 1127 HOH HOH A . F 6 HOH 128 1128 1128 HOH HOH A . F 6 HOH 129 1129 1129 HOH HOH A . F 6 HOH 130 1130 1130 HOH HOH A . F 6 HOH 131 1131 1131 HOH HOH A . F 6 HOH 132 1132 1132 HOH HOH A . F 6 HOH 133 1133 1133 HOH HOH A . F 6 HOH 134 1134 1134 HOH HOH A . F 6 HOH 135 1135 1135 HOH HOH A . F 6 HOH 136 1136 1136 HOH HOH A . F 6 HOH 137 1137 1137 HOH HOH A . F 6 HOH 138 1138 1138 HOH HOH A . F 6 HOH 139 1139 1139 HOH HOH A . F 6 HOH 140 1140 1140 HOH HOH A . F 6 HOH 141 1141 1141 HOH HOH A . F 6 HOH 142 1142 1142 HOH HOH A . F 6 HOH 143 1143 1143 HOH HOH A . F 6 HOH 144 1144 1144 HOH HOH A . F 6 HOH 145 1145 1145 HOH HOH A . F 6 HOH 146 1146 1146 HOH HOH A . F 6 HOH 147 1147 1147 HOH HOH A . F 6 HOH 148 1148 1148 HOH HOH A . F 6 HOH 149 1149 1149 HOH HOH A . F 6 HOH 150 1150 1150 HOH HOH A . F 6 HOH 151 1151 1151 HOH HOH A . F 6 HOH 152 1152 1152 HOH HOH A . F 6 HOH 153 1153 1153 HOH HOH A . F 6 HOH 154 1154 1154 HOH HOH A . F 6 HOH 155 1155 1155 HOH HOH A . F 6 HOH 156 1156 1156 HOH HOH A . F 6 HOH 157 1157 1157 HOH HOH A . F 6 HOH 158 1158 1158 HOH HOH A . F 6 HOH 159 1159 1159 HOH HOH A . F 6 HOH 160 1160 1160 HOH HOH A . F 6 HOH 161 1161 1161 HOH HOH A . F 6 HOH 162 1162 1162 HOH HOH A . F 6 HOH 163 1163 1163 HOH HOH A . F 6 HOH 164 1164 1164 HOH HOH A . F 6 HOH 165 1165 1165 HOH HOH A . F 6 HOH 166 1166 1166 HOH HOH A . F 6 HOH 167 1167 1167 HOH HOH A . F 6 HOH 168 1168 1168 HOH HOH A . F 6 HOH 169 1169 1169 HOH HOH A . F 6 HOH 170 1170 1170 HOH HOH A . F 6 HOH 171 1171 1171 HOH HOH A . F 6 HOH 172 1172 1172 HOH HOH A . F 6 HOH 173 1173 1173 HOH HOH A . F 6 HOH 174 1174 1174 HOH HOH A . F 6 HOH 175 1175 1175 HOH HOH A . F 6 HOH 176 1176 1176 HOH HOH A . F 6 HOH 177 1177 1177 HOH HOH A . F 6 HOH 178 1178 1178 HOH HOH A . F 6 HOH 179 1179 1179 HOH HOH A . F 6 HOH 180 1180 1180 HOH HOH A . F 6 HOH 181 1181 1181 HOH HOH A . F 6 HOH 182 1182 1182 HOH HOH A . F 6 HOH 183 1183 1183 HOH HOH A . F 6 HOH 184 1184 1184 HOH HOH A . F 6 HOH 185 1185 1185 HOH HOH A . F 6 HOH 186 1186 1186 HOH HOH A . F 6 HOH 187 1187 1187 HOH HOH A . F 6 HOH 188 1188 1188 HOH HOH A . F 6 HOH 189 1189 1189 HOH HOH A . F 6 HOH 190 1190 1190 HOH HOH A . F 6 HOH 191 1191 1191 HOH HOH A . F 6 HOH 192 1192 1192 HOH HOH A . F 6 HOH 193 1193 1193 HOH HOH A . F 6 HOH 194 1194 1194 HOH HOH A . F 6 HOH 195 1195 1195 HOH HOH A . F 6 HOH 196 1196 1196 HOH HOH A . F 6 HOH 197 1197 1197 HOH HOH A . F 6 HOH 198 1198 1198 HOH HOH A . F 6 HOH 199 1199 1199 HOH HOH A . F 6 HOH 200 1200 1200 HOH HOH A . F 6 HOH 201 1201 1201 HOH HOH A . F 6 HOH 202 1202 1202 HOH HOH A . F 6 HOH 203 1203 1203 HOH HOH A . F 6 HOH 204 1204 1204 HOH HOH A . F 6 HOH 205 1205 1205 HOH HOH A . F 6 HOH 206 1206 1206 HOH HOH A . F 6 HOH 207 1207 1207 HOH HOH A . F 6 HOH 208 1208 1208 HOH HOH A . F 6 HOH 209 1209 1209 HOH HOH A . F 6 HOH 210 1210 1210 HOH HOH A . F 6 HOH 211 1211 1211 HOH HOH A . F 6 HOH 212 1212 1212 HOH HOH A . F 6 HOH 213 1213 1213 HOH HOH A . F 6 HOH 214 1214 1214 HOH HOH A . F 6 HOH 215 1215 1215 HOH HOH A . F 6 HOH 216 1216 1216 HOH HOH A . F 6 HOH 217 1217 1217 HOH HOH A . F 6 HOH 218 1218 1218 HOH HOH A . F 6 HOH 219 1219 1219 HOH HOH A . F 6 HOH 220 1220 1220 HOH HOH A . F 6 HOH 221 1221 1221 HOH HOH A . F 6 HOH 222 1222 1222 HOH HOH A . F 6 HOH 223 1223 1223 HOH HOH A . F 6 HOH 224 1224 1224 HOH HOH A . F 6 HOH 225 1225 1225 HOH HOH A . F 6 HOH 226 1226 1226 HOH HOH A . F 6 HOH 227 1227 1227 HOH HOH A . F 6 HOH 228 1228 1228 HOH HOH A . F 6 HOH 229 1229 1229 HOH HOH A . F 6 HOH 230 1230 1230 HOH HOH A . F 6 HOH 231 1231 1231 HOH HOH A . F 6 HOH 232 1232 1232 HOH HOH A . F 6 HOH 233 1233 1233 HOH HOH A . F 6 HOH 234 1234 1234 HOH HOH A . F 6 HOH 235 1235 1235 HOH HOH A . F 6 HOH 236 1236 1236 HOH HOH A . F 6 HOH 237 1237 1237 HOH HOH A . F 6 HOH 238 1238 1238 HOH HOH A . F 6 HOH 239 1239 1239 HOH HOH A . F 6 HOH 240 1240 1240 HOH HOH A . F 6 HOH 241 1241 1241 HOH HOH A . F 6 HOH 242 1242 1242 HOH HOH A . F 6 HOH 243 1243 1243 HOH HOH A . F 6 HOH 244 1244 1244 HOH HOH A . F 6 HOH 245 1245 1245 HOH HOH A . F 6 HOH 246 1246 1246 HOH HOH A . F 6 HOH 247 1247 1247 HOH HOH A . F 6 HOH 248 1248 1248 HOH HOH A . # _pdbx_molecule_features.prd_id PRD_900116 _pdbx_molecule_features.name 4beta-beta-xylobiose _pdbx_molecule_features.type Oligosaccharide _pdbx_molecule_features.class Metabolism _pdbx_molecule_features.details oligosaccharide # _pdbx_molecule.instance_id 1 _pdbx_molecule.prd_id PRD_900116 _pdbx_molecule.asym_id C # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id PCA _pdbx_struct_mod_residue.label_seq_id 1 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id PCA _pdbx_struct_mod_residue.auth_seq_id 1 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id GLN _pdbx_struct_mod_residue.details 'PYROGLUTAMIC ACID' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OD1 ? A ASN 92 ? A ASN 92 ? 1_555 CA ? E CA . ? A CA 407 ? 1_555 O ? A PHE 93 ? A PHE 93 ? 1_555 75.5 ? 2 OD1 ? A ASN 92 ? A ASN 92 ? 1_555 CA ? E CA . ? A CA 407 ? 1_555 O ? F HOH . ? A HOH 1096 ? 1_555 77.0 ? 3 O ? A PHE 93 ? A PHE 93 ? 1_555 CA ? E CA . ? A CA 407 ? 1_555 O ? F HOH . ? A HOH 1096 ? 1_555 75.1 ? 4 OD1 ? A ASN 92 ? A ASN 92 ? 1_555 CA ? E CA . ? A CA 407 ? 1_555 O ? F HOH . ? A HOH 1101 ? 1_555 145.2 ? 5 O ? A PHE 93 ? A PHE 93 ? 1_555 CA ? E CA . ? A CA 407 ? 1_555 O ? F HOH . ? A HOH 1101 ? 1_555 73.3 ? 6 O ? F HOH . ? A HOH 1096 ? 1_555 CA ? E CA . ? A CA 407 ? 1_555 O ? F HOH . ? A HOH 1101 ? 1_555 109.1 ? 7 OD1 ? A ASN 92 ? A ASN 92 ? 1_555 CA ? E CA . ? A CA 407 ? 1_555 O ? F HOH . ? A HOH 1108 ? 1_555 135.1 ? 8 O ? A PHE 93 ? A PHE 93 ? 1_555 CA ? E CA . ? A CA 407 ? 1_555 O ? F HOH . ? A HOH 1108 ? 1_555 139.2 ? 9 O ? F HOH . ? A HOH 1096 ? 1_555 CA ? E CA . ? A CA 407 ? 1_555 O ? F HOH . ? A HOH 1108 ? 1_555 129.9 ? 10 O ? F HOH . ? A HOH 1101 ? 1_555 CA ? E CA . ? A CA 407 ? 1_555 O ? F HOH . ? A HOH 1108 ? 1_555 68.0 ? 11 OD1 ? A ASN 92 ? A ASN 92 ? 1_555 CA ? E CA . ? A CA 407 ? 1_555 O ? F HOH . ? A HOH 1181 ? 1_555 77.4 ? 12 O ? A PHE 93 ? A PHE 93 ? 1_555 CA ? E CA . ? A CA 407 ? 1_555 O ? F HOH . ? A HOH 1181 ? 1_555 148.0 ? 13 O ? F HOH . ? A HOH 1096 ? 1_555 CA ? E CA . ? A CA 407 ? 1_555 O ? F HOH . ? A HOH 1181 ? 1_555 82.5 ? 14 O ? F HOH . ? A HOH 1101 ? 1_555 CA ? E CA . ? A CA 407 ? 1_555 O ? F HOH . ? A HOH 1181 ? 1_555 136.7 ? 15 O ? F HOH . ? A HOH 1108 ? 1_555 CA ? E CA . ? A CA 407 ? 1_555 O ? F HOH . ? A HOH 1181 ? 1_555 72.8 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-01-08 2 'Structure model' 1 1 2014-02-12 3 'Structure model' 2 0 2019-12-25 4 'Structure model' 3 0 2020-07-29 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 4 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Polymer sequence' 6 4 'Structure model' 'Atomic model' 7 4 'Structure model' 'Data collection' 8 4 'Structure model' 'Derived calculations' 9 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp 2 3 'Structure model' entity_poly 3 3 'Structure model' pdbx_struct_mod_residue 4 3 'Structure model' struct_conn 5 3 'Structure model' struct_ref_seq_dif 6 4 'Structure model' atom_site 7 4 'Structure model' chem_comp 8 4 'Structure model' entity 9 4 'Structure model' entity_name_com 10 4 'Structure model' pdbx_branch_scheme 11 4 'Structure model' pdbx_chem_comp_identifier 12 4 'Structure model' pdbx_entity_branch 13 4 'Structure model' pdbx_entity_branch_descriptor 14 4 'Structure model' pdbx_entity_branch_link 15 4 'Structure model' pdbx_entity_branch_list 16 4 'Structure model' pdbx_entity_nonpoly 17 4 'Structure model' pdbx_molecule_features 18 4 'Structure model' pdbx_nonpoly_scheme 19 4 'Structure model' pdbx_struct_assembly_gen 20 4 'Structure model' pdbx_struct_conn_angle 21 4 'Structure model' struct_asym 22 4 'Structure model' struct_conn 23 4 'Structure model' struct_site 24 4 'Structure model' struct_site_gen # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_chem_comp.type' 2 3 'Structure model' '_entity_poly.pdbx_seq_one_letter_code_can' 3 3 'Structure model' '_pdbx_struct_mod_residue.parent_comp_id' 4 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 5 3 'Structure model' '_struct_ref_seq_dif.details' 6 4 'Structure model' '_atom_site.B_iso_or_equiv' 7 4 'Structure model' '_atom_site.Cartn_x' 8 4 'Structure model' '_atom_site.Cartn_y' 9 4 'Structure model' '_atom_site.Cartn_z' 10 4 'Structure model' '_atom_site.auth_asym_id' 11 4 'Structure model' '_atom_site.auth_atom_id' 12 4 'Structure model' '_atom_site.auth_comp_id' 13 4 'Structure model' '_atom_site.auth_seq_id' 14 4 'Structure model' '_atom_site.label_asym_id' 15 4 'Structure model' '_atom_site.label_atom_id' 16 4 'Structure model' '_atom_site.label_comp_id' 17 4 'Structure model' '_atom_site.label_entity_id' 18 4 'Structure model' '_atom_site.type_symbol' 19 4 'Structure model' '_chem_comp.name' 20 4 'Structure model' '_chem_comp.type' 21 4 'Structure model' '_entity.formula_weight' 22 4 'Structure model' '_entity.pdbx_description' 23 4 'Structure model' '_entity.pdbx_number_of_molecules' 24 4 'Structure model' '_entity.type' 25 4 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list' 26 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 27 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 28 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 29 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 30 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 31 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 32 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 33 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 34 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 35 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 36 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 37 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 38 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 39 4 'Structure model' '_pdbx_struct_conn_angle.value' 40 4 'Structure model' '_struct_conn.pdbx_dist_value' 41 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 42 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 43 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 44 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 45 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 46 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 47 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 48 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 49 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 50 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 51 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 52 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 53 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-3000 'data collection' . ? 1 PHASER phasing . ? 2 SHELXL-97 refinement . ? 3 HKL-3000 'data reduction' . ? 4 HKL-3000 'data scaling' . ? 5 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 CB _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 TYR _pdbx_validate_rmsd_angle.auth_seq_id_1 87 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CG _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 TYR _pdbx_validate_rmsd_angle.auth_seq_id_2 87 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 CD1 _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 TYR _pdbx_validate_rmsd_angle.auth_seq_id_3 87 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 126.44 _pdbx_validate_rmsd_angle.angle_target_value 121.00 _pdbx_validate_rmsd_angle.angle_deviation 5.44 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.60 _pdbx_validate_rmsd_angle.linker_flag N # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ASP _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 170 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -104.62 _pdbx_validate_torsion.psi -138.09 # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero B 2 XYS 1 B XYS 1 1 XYS 403 n B 2 XYP 2 B XYP 2 1 XYP 402 n B 2 XYP 3 B XYP 3 1 XYP 401 n C 3 XYP 1 C XYP 1 2 XYP 403 n C 3 XYP 2 C XYP 2 2 XYP 402 n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier XYP 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DXylpb XYP 'COMMON NAME' GMML 1.0 b-D-xylopyranose XYP 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-Xylp XYP 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Xyl XYS 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DXylpa XYS 'COMMON NAME' GMML 1.0 a-D-xylopyranose XYS 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-D-Xylp XYS 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Xyl # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 2 DXylpb1-4DXylpb1-4DXylpa1-ROH 'Glycam Condensed Sequence' GMML 1.0 2 2 'WURCS=2.0/2,3,2/[a212h-1a_1-5][a212h-1b_1-5]/1-2-2/a4-b1_b4-c1' WURCS PDB2Glycan 1.1.0 3 2 '[][a-D-Xylp]{[(4+1)][b-D-Xylp]{[(4+1)][b-D-Xylp]{}}}' LINUCS PDB-CARE ? 4 3 DXylpb1-4DXylpb1-ROH 'Glycam Condensed Sequence' GMML 1.0 5 3 'WURCS=2.0/1,2,1/[a212h-1b_1-5]/1-1/a4-b1' WURCS PDB2Glycan 1.1.0 6 3 '[][<C5O3>]{[(1+1)][b-D-Xylp]{}}' LINUCS PDB-CARE ? # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.value_order _pdbx_entity_branch_link.details 1 2 2 XYP C1 O1 1 XYS O4 HO4 sing ? 2 2 3 XYP C1 O1 2 XYP O4 HO4 sing ? 3 3 2 XYP C1 O1 1 XYP O4 HO4 sing ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 2 XYS 1 n 2 XYP 2 n 2 XYP 3 n 3 XYP 1 n 3 XYP 2 n # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL TRS 5 'CALCIUM ION' CA 6 water HOH #