HEADER APOPTOSIS/PROTEIN BINDING 19-OCT-12 4HNJ TITLE CRYSTALLOGRAPHIC STRUCTURE OF BCL-XL DOMAIN-SWAPPED DIMER IN COMPLEX TITLE 2 WITH PUMA BH3 PEPTIDE AT 2.9A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: BCL-2-LIKE PROTEIN 1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: BCL2-L-1, APOPTOSIS REGULATOR BCL-X; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: BCL-2-BINDING COMPONENT 3; COMPND 8 CHAIN: C; COMPND 9 FRAGMENT: BH3 DOMAIN PEPTIDE; COMPND 10 SYNONYM: JFY-1, P53 UP-REGULATED MODULATOR OF APOPTOSIS; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BCL2L1, BCL2L, BCLX; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-28; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_COMMON: HUMAN; SOURCE 15 ORGANISM_TAXID: 9606 KEYWDS BCL2-FAMILY, DOMAIN-SWAPPED DIMER, APOPTOSIS REGULATION, BCL-XL, KEYWDS 2 PUMA, APOPTOSIS-PROTEIN BINDING COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.C.FISHER,M.K.YUN,S.W.WHITE REVDAT 5 20-SEP-23 4HNJ 1 SEQADV REVDAT 4 15-NOV-17 4HNJ 1 REMARK REVDAT 3 06-MAR-13 4HNJ 1 JRNL REVDAT 2 06-FEB-13 4HNJ 1 JRNL REVDAT 1 23-JAN-13 4HNJ 0 JRNL AUTH A.V.FOLLIS,J.E.CHIPUK,J.C.FISHER,M.K.YUN,C.R.GRACE,A.NOURSE, JRNL AUTH 2 K.BARAN,L.OU,L.MIN,S.W.WHITE,D.R.GREEN,R.W.KRIWACKI JRNL TITL PUMA BINDING INDUCES PARTIAL UNFOLDING WITHIN BCL-XL TO JRNL TITL 2 DISRUPT P53 BINDING AND PROMOTE APOPTOSIS. JRNL REF NAT.CHEM.BIOL. V. 9 163 2013 JRNL REFN ISSN 1552-4450 JRNL PMID 23340338 JRNL DOI 10.1038/NCHEMBIO.1166 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.7.3_928 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.88 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 3 NUMBER OF REFLECTIONS : 11256 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.820 REMARK 3 FREE R VALUE TEST SET COUNT : 542 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.8829 - 4.6075 0.99 2944 137 0.2318 0.2643 REMARK 3 2 4.6075 - 3.6577 1.00 2772 139 0.1538 0.2188 REMARK 3 3 3.6577 - 3.1956 0.99 2745 129 0.1900 0.2179 REMARK 3 4 3.1956 - 2.9000 0.83 2253 137 0.2763 0.3617 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.30 REMARK 3 SHRINKAGE RADIUS : 1.11 REMARK 3 K_SOL : 0.34 REMARK 3 B_SOL : 68.85 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.420 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.010 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 93.86 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 9.07360 REMARK 3 B22 (A**2) : 9.07360 REMARK 3 B33 (A**2) : -18.14710 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 2381 REMARK 3 ANGLE : 0.775 3221 REMARK 3 CHIRALITY : 0.050 341 REMARK 3 PLANARITY : 0.002 416 REMARK 3 DIHEDRAL : 15.017 824 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): 42.1797 4.0749 -13.7386 REMARK 3 T TENSOR REMARK 3 T11: 0.4758 T22: 0.4124 REMARK 3 T33: 0.4081 T12: 0.1067 REMARK 3 T13: 0.0288 T23: -0.0052 REMARK 3 L TENSOR REMARK 3 L11: 2.7994 L22: 1.5291 REMARK 3 L33: 3.1577 L12: -0.8912 REMARK 3 L13: 0.5771 L23: -0.1484 REMARK 3 S TENSOR REMARK 3 S11: 0.3042 S12: 0.2192 S13: 0.1363 REMARK 3 S21: -0.2110 S22: -0.0843 S23: 0.1449 REMARK 3 S31: -0.3285 S32: -0.3133 S33: -0.2068 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): 32.0509 26.2863 -28.7465 REMARK 3 T TENSOR REMARK 3 T11: 0.5594 T22: 0.6674 REMARK 3 T33: 0.4257 T12: 0.3216 REMARK 3 T13: -0.0633 T23: 0.0239 REMARK 3 L TENSOR REMARK 3 L11: 3.0632 L22: 3.2714 REMARK 3 L33: 2.5659 L12: -0.5303 REMARK 3 L13: 0.1657 L23: 0.1287 REMARK 3 S TENSOR REMARK 3 S11: -0.3395 S12: -0.4089 S13: 0.2832 REMARK 3 S21: -0.4812 S22: -0.2171 S23: -0.1514 REMARK 3 S31: -0.5200 S32: 0.6089 S33: 0.0889 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN C REMARK 3 ORIGIN FOR THE GROUP (A): 24.8966 16.6157 -12.3952 REMARK 3 T TENSOR REMARK 3 T11: 0.6390 T22: 0.9974 REMARK 3 T33: 0.7492 T12: 0.3881 REMARK 3 T13: 0.0480 T23: 0.0073 REMARK 3 L TENSOR REMARK 3 L11: 4.5470 L22: 3.4371 REMARK 3 L33: 4.4945 L12: 3.5364 REMARK 3 L13: 4.5106 L23: 3.4258 REMARK 3 S TENSOR REMARK 3 S11: -0.1767 S12: -0.5211 S13: 1.0173 REMARK 3 S21: 0.1637 S22: -0.1261 S23: 0.5425 REMARK 3 S31: -0.4536 S32: -0.6968 S33: 0.7499 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4HNJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-OCT-12. REMARK 100 THE DEPOSITION ID IS D_1000075687. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-DEC-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11326 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.340 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 200 DATA REDUNDANCY : 21.70 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09400 REMARK 200 FOR THE DATA SET : 38.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 68.9 REMARK 200 DATA REDUNDANCY IN SHELL : 8.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1R2D REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M CACL2, 0.1 M NAOAC, 20% V/V REMARK 280 ISOPROPANOL, PH 4.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z+1/2 REMARK 290 4555 Y,-X,Z+1/2 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z+1/2 REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 55.77100 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 55.77100 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 55.77100 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 55.77100 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A 25 REMARK 465 GLN A 26 REMARK 465 PHE A 27 REMARK 465 SER A 28 REMARK 465 ASP A 29 REMARK 465 VAL A 30 REMARK 465 GLU A 31 REMARK 465 GLU A 32 REMARK 465 ASN A 33 REMARK 465 ARG A 34 REMARK 465 THR A 35 REMARK 465 GLU A 36 REMARK 465 ALA A 37 REMARK 465 PRO A 38 REMARK 465 GLU A 39 REMARK 465 GLY A 40 REMARK 465 THR A 41 REMARK 465 GLU A 42 REMARK 465 SER A 43 REMARK 465 GLU A 44 REMARK 465 MET A 45 REMARK 465 GLU A 46 REMARK 465 THR A 47 REMARK 465 PRO A 48 REMARK 465 SER A 49 REMARK 465 ALA A 50 REMARK 465 ILE A 51 REMARK 465 ASN A 52 REMARK 465 GLY A 53 REMARK 465 ASN A 54 REMARK 465 PRO A 55 REMARK 465 SER A 56 REMARK 465 TRP A 57 REMARK 465 HIS A 58 REMARK 465 LEU A 59 REMARK 465 ALA A 60 REMARK 465 ASP A 61 REMARK 465 SER A 62 REMARK 465 PRO A 63 REMARK 465 ALA A 64 REMARK 465 VAL A 65 REMARK 465 ASN A 66 REMARK 465 GLY A 67 REMARK 465 ALA A 68 REMARK 465 THR A 69 REMARK 465 GLY A 70 REMARK 465 HIS A 71 REMARK 465 SER A 72 REMARK 465 SER A 73 REMARK 465 SER A 74 REMARK 465 LEU A 75 REMARK 465 ASP A 76 REMARK 465 ALA A 77 REMARK 465 ARG A 78 REMARK 465 GLU A 79 REMARK 465 VAL A 80 REMARK 465 ASN A 197 REMARK 465 ASN A 198 REMARK 465 ALA A 199 REMARK 465 ALA A 200 REMARK 465 ALA A 201 REMARK 465 GLU A 202 REMARK 465 SER A 203 REMARK 465 ARG A 204 REMARK 465 LYS A 205 REMARK 465 GLY A 206 REMARK 465 GLN A 207 REMARK 465 GLU A 208 REMARK 465 ARG A 209 REMARK 465 GLY B -2 REMARK 465 ASN B 33 REMARK 465 ARG B 34 REMARK 465 THR B 35 REMARK 465 GLU B 36 REMARK 465 ALA B 37 REMARK 465 PRO B 38 REMARK 465 GLU B 39 REMARK 465 GLY B 40 REMARK 465 THR B 41 REMARK 465 GLU B 42 REMARK 465 SER B 43 REMARK 465 GLU B 44 REMARK 465 MET B 45 REMARK 465 GLU B 46 REMARK 465 THR B 47 REMARK 465 PRO B 48 REMARK 465 SER B 49 REMARK 465 ALA B 50 REMARK 465 ILE B 51 REMARK 465 ASN B 52 REMARK 465 GLY B 53 REMARK 465 ASN B 54 REMARK 465 PRO B 55 REMARK 465 SER B 56 REMARK 465 TRP B 57 REMARK 465 HIS B 58 REMARK 465 LEU B 59 REMARK 465 ALA B 60 REMARK 465 ASP B 61 REMARK 465 SER B 62 REMARK 465 PRO B 63 REMARK 465 ALA B 64 REMARK 465 VAL B 65 REMARK 465 ASN B 66 REMARK 465 GLY B 67 REMARK 465 ALA B 68 REMARK 465 THR B 69 REMARK 465 GLY B 70 REMARK 465 HIS B 71 REMARK 465 SER B 72 REMARK 465 SER B 73 REMARK 465 SER B 74 REMARK 465 LEU B 75 REMARK 465 ASP B 76 REMARK 465 ALA B 77 REMARK 465 ARG B 78 REMARK 465 GLU B 79 REMARK 465 VAL B 80 REMARK 465 ILE B 81 REMARK 465 SER B 106 REMARK 465 ASP B 107 REMARK 465 LEU B 108 REMARK 465 THR B 109 REMARK 465 SER B 110 REMARK 465 GLN B 111 REMARK 465 LEU B 112 REMARK 465 HIS B 113 REMARK 465 ILE B 114 REMARK 465 THR B 115 REMARK 465 PRO B 116 REMARK 465 GLY B 117 REMARK 465 THR B 118 REMARK 465 ALA B 119 REMARK 465 TYR B 120 REMARK 465 ARG B 132 REMARK 465 ASP B 133 REMARK 465 GLY B 134 REMARK 465 GLY B 196 REMARK 465 ASN B 197 REMARK 465 ASN B 198 REMARK 465 ALA B 199 REMARK 465 ALA B 200 REMARK 465 ALA B 201 REMARK 465 GLU B 202 REMARK 465 SER B 203 REMARK 465 ARG B 204 REMARK 465 LYS B 205 REMARK 465 GLY B 206 REMARK 465 GLN B 207 REMARK 465 GLU B 208 REMARK 465 ARG B 209 REMARK 465 GLU C 301 REMARK 465 GLU C 324 REMARK 465 ARG C 325 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A -1 OG REMARK 470 HIS A 0 CG ND1 CD2 CE1 NE2 REMARK 470 MET A 1 CG SD CE REMARK 470 TRP A 24 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 24 CZ3 CH2 REMARK 470 ILE A 81 CG1 CG2 CD1 REMARK 470 SER A 106 OG REMARK 470 GLU A 193 CG CD OE1 OE2 REMARK 470 SER B -1 OG REMARK 470 HIS B 0 CG ND1 CD2 CE1 NE2 REMARK 470 MET B 1 CG SD CE REMARK 470 ARG B 6 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 32 CG CD OE1 OE2 REMARK 470 ARG B 102 CG CD NE CZ NH1 NH2 REMARK 470 PHE B 105 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU B 124 CG CD OE1 OE2 REMARK 470 GLN B 125 CG CD OE1 NE2 REMARK 470 LEU B 130 CG CD1 CD2 REMARK 470 ARG C 306 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 106 -92.83 -99.27 REMARK 500 TYR B 22 65.15 -114.81 REMARK 500 ASN B 185 44.50 -105.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2M04 RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF BCL-XL IN COMPLEX WITH PUMA BH3 PEPTIDE REMARK 900 RELATED ID: 2M03 RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF BCL-XL DETERMINED WITH SELECTIVE ISOTOPE REMARK 900 LABELLING OF I,L,V SIDECHAINS DBREF 4HNJ A 1 209 UNP Q07817 B2CL1_HUMAN 1 209 DBREF 4HNJ B 1 209 UNP Q07817 B2CL1_HUMAN 1 209 DBREF 4HNJ C 301 325 UNP Q9BXH1 BBC3_HUMAN 130 154 SEQADV 4HNJ GLY A -2 UNP Q07817 EXPRESSION TAG SEQADV 4HNJ SER A -1 UNP Q07817 EXPRESSION TAG SEQADV 4HNJ HIS A 0 UNP Q07817 EXPRESSION TAG SEQADV 4HNJ GLY B -2 UNP Q07817 EXPRESSION TAG SEQADV 4HNJ SER B -1 UNP Q07817 EXPRESSION TAG SEQADV 4HNJ HIS B 0 UNP Q07817 EXPRESSION TAG SEQRES 1 A 212 GLY SER HIS MET SER GLN SER ASN ARG GLU LEU VAL VAL SEQRES 2 A 212 ASP PHE LEU SER TYR LYS LEU SER GLN LYS GLY TYR SER SEQRES 3 A 212 TRP SER GLN PHE SER ASP VAL GLU GLU ASN ARG THR GLU SEQRES 4 A 212 ALA PRO GLU GLY THR GLU SER GLU MET GLU THR PRO SER SEQRES 5 A 212 ALA ILE ASN GLY ASN PRO SER TRP HIS LEU ALA ASP SER SEQRES 6 A 212 PRO ALA VAL ASN GLY ALA THR GLY HIS SER SER SER LEU SEQRES 7 A 212 ASP ALA ARG GLU VAL ILE PRO MET ALA ALA VAL LYS GLN SEQRES 8 A 212 ALA LEU ARG GLU ALA GLY ASP GLU PHE GLU LEU ARG TYR SEQRES 9 A 212 ARG ARG ALA PHE SER ASP LEU THR SER GLN LEU HIS ILE SEQRES 10 A 212 THR PRO GLY THR ALA TYR GLN SER PHE GLU GLN VAL VAL SEQRES 11 A 212 ASN GLU LEU PHE ARG ASP GLY VAL ASN TRP GLY ARG ILE SEQRES 12 A 212 VAL ALA PHE PHE SER PHE GLY GLY ALA LEU CYS VAL GLU SEQRES 13 A 212 SER VAL ASP LYS GLU MET GLN VAL LEU VAL SER ARG ILE SEQRES 14 A 212 ALA ALA TRP MET ALA THR TYR LEU ASN ASP HIS LEU GLU SEQRES 15 A 212 PRO TRP ILE GLN GLU ASN GLY GLY TRP ASP THR PHE VAL SEQRES 16 A 212 GLU LEU TYR GLY ASN ASN ALA ALA ALA GLU SER ARG LYS SEQRES 17 A 212 GLY GLN GLU ARG SEQRES 1 B 212 GLY SER HIS MET SER GLN SER ASN ARG GLU LEU VAL VAL SEQRES 2 B 212 ASP PHE LEU SER TYR LYS LEU SER GLN LYS GLY TYR SER SEQRES 3 B 212 TRP SER GLN PHE SER ASP VAL GLU GLU ASN ARG THR GLU SEQRES 4 B 212 ALA PRO GLU GLY THR GLU SER GLU MET GLU THR PRO SER SEQRES 5 B 212 ALA ILE ASN GLY ASN PRO SER TRP HIS LEU ALA ASP SER SEQRES 6 B 212 PRO ALA VAL ASN GLY ALA THR GLY HIS SER SER SER LEU SEQRES 7 B 212 ASP ALA ARG GLU VAL ILE PRO MET ALA ALA VAL LYS GLN SEQRES 8 B 212 ALA LEU ARG GLU ALA GLY ASP GLU PHE GLU LEU ARG TYR SEQRES 9 B 212 ARG ARG ALA PHE SER ASP LEU THR SER GLN LEU HIS ILE SEQRES 10 B 212 THR PRO GLY THR ALA TYR GLN SER PHE GLU GLN VAL VAL SEQRES 11 B 212 ASN GLU LEU PHE ARG ASP GLY VAL ASN TRP GLY ARG ILE SEQRES 12 B 212 VAL ALA PHE PHE SER PHE GLY GLY ALA LEU CYS VAL GLU SEQRES 13 B 212 SER VAL ASP LYS GLU MET GLN VAL LEU VAL SER ARG ILE SEQRES 14 B 212 ALA ALA TRP MET ALA THR TYR LEU ASN ASP HIS LEU GLU SEQRES 15 B 212 PRO TRP ILE GLN GLU ASN GLY GLY TRP ASP THR PHE VAL SEQRES 16 B 212 GLU LEU TYR GLY ASN ASN ALA ALA ALA GLU SER ARG LYS SEQRES 17 B 212 GLY GLN GLU ARG SEQRES 1 C 25 GLU GLU GLN TRP ALA ARG GLU ILE GLY ALA GLN LEU ARG SEQRES 2 C 25 ARG MET ALA ASP ASP LEU ASN ALA GLN TYR GLU ARG FORMUL 4 HOH *4(H2 O) HELIX 1 1 SER A -1 LYS A 20 1 22 HELIX 2 2 PRO A 82 ARG A 102 1 21 HELIX 3 3 ARG A 103 PHE A 105 5 3 HELIX 4 4 ASP A 107 HIS A 113 1 7 HELIX 5 5 THR A 115 GLY A 117 5 3 HELIX 6 6 THR A 118 PHE A 131 1 14 HELIX 7 7 ASN A 136 LEU A 178 1 43 HELIX 8 8 LEU A 178 ASN A 185 1 8 HELIX 9 9 GLY A 186 TYR A 195 1 10 HELIX 10 10 HIS B 0 LYS B 20 1 21 HELIX 11 11 TYR B 22 SER B 28 5 7 HELIX 12 12 MET B 83 TYR B 101 1 19 HELIX 13 13 SER B 122 PHE B 131 1 10 HELIX 14 14 ASN B 136 LEU B 178 1 43 HELIX 15 15 LEU B 178 ASN B 185 1 8 HELIX 16 16 GLY B 186 TYR B 195 1 10 HELIX 17 17 GLN C 303 TYR C 323 1 21 CRYST1 94.829 94.829 111.542 90.00 90.00 90.00 P 42 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010545 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010545 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008965 0.00000