HEADER HYDROLASE 20-OCT-12 4HNO TITLE HIGH RESOLUTION CRYSTAL STRUCTURE OF DNA APURINIC/APYRIMIDINIC (AP) TITLE 2 ENDONUCLEASE IV NFO FROM THERMATOGA MARITIMA COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE ENDONUCLEASE 4; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ENDODEOXYRIBONUCLEASE IV, ENDONUCLEASE IV; COMPND 5 EC: 3.1.21.2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 3 ORGANISM_TAXID: 243274; SOURCE 4 STRAIN: ATCC 43589 / MSB8 / DSM 3109 / JCM 10099; SOURCE 5 GENE: NFO, TM_0362; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ENDONUCLEASE 4, ENDODEOXYRIBONUCLEASE IV, ENDO IV, NFO, KEYWDS 2 METALLOPROTEIN, DNA DAMAGE, DNA REPAIR, BASE EXCISION REPAIR, KEYWDS 3 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR D.S.SHIN,D.J.HOSFIELD,A.S.ARVAI,S.E.TSUTAKAWA,J.A.TAINER REVDAT 5 20-SEP-23 4HNO 1 REMARK SEQADV LINK REVDAT 4 15-NOV-17 4HNO 1 REMARK REVDAT 3 10-APR-13 4HNO 1 JRNL REVDAT 2 13-FEB-13 4HNO 1 JRNL REVDAT 1 23-JAN-13 4HNO 0 JRNL AUTH S.E.TSUTAKAWA,D.S.SHIN,C.D.MOL,T.IZUMI,A.S.ARVAI,A.K.MANTHA, JRNL AUTH 2 B.SZCZESNY,I.N.IVANOV,D.J.HOSFIELD,B.MAITI,M.E.PIQUE, JRNL AUTH 3 K.A.FRANKEL,K.HITOMI,R.P.CUNNINGHAM,S.MITRA,J.A.TAINER JRNL TITL CONSERVED STRUCTURAL CHEMISTRY FOR INCISION ACTIVITY IN JRNL TITL 2 STRUCTURALLY NON-HOMOLOGOUS APURINIC/APYRIMIDINIC JRNL TITL 3 ENDONUCLEASE APE1 AND ENDONUCLEASE IV DNA REPAIR ENZYMES. JRNL REF J.BIOL.CHEM. V. 288 8445 2013 JRNL REFN ISSN 0021-9258 JRNL PMID 23355472 JRNL DOI 10.1074/JBC.M112.422774 REMARK 2 REMARK 2 RESOLUTION. 0.92 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.1_1168 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 0.92 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.51 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.9 REMARK 3 NUMBER OF REFLECTIONS : 204917 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.126 REMARK 3 R VALUE (WORKING SET) : 0.125 REMARK 3 FREE R VALUE : 0.139 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 10253 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 24.5198 - 2.8553 0.94 6617 365 0.1551 0.1599 REMARK 3 2 2.8553 - 2.2669 0.99 6778 388 0.1275 0.1436 REMARK 3 3 2.2669 - 1.9805 0.97 6592 363 0.1211 0.1329 REMARK 3 4 1.9805 - 1.7994 0.97 6661 337 0.1220 0.1461 REMARK 3 5 1.7994 - 1.6705 0.98 6643 366 0.1243 0.1352 REMARK 3 6 1.6705 - 1.5720 0.99 6793 314 0.1187 0.1478 REMARK 3 7 1.5720 - 1.4933 1.00 6741 347 0.1013 0.1110 REMARK 3 8 1.4933 - 1.4283 1.00 6750 355 0.0981 0.1213 REMARK 3 9 1.4283 - 1.3733 1.00 6719 384 0.1001 0.1159 REMARK 3 10 1.3733 - 1.3259 0.98 6606 333 0.1000 0.1186 REMARK 3 11 1.3259 - 1.2845 0.95 6434 327 0.0999 0.1140 REMARK 3 12 1.2845 - 1.2478 0.95 6451 329 0.1000 0.1151 REMARK 3 13 1.2478 - 1.2149 0.95 6447 318 0.0976 0.1071 REMARK 3 14 1.2149 - 1.1853 0.96 6470 359 0.1000 0.1188 REMARK 3 15 1.1853 - 1.1583 0.96 6459 372 0.0974 0.1107 REMARK 3 16 1.1583 - 1.1337 0.96 6497 334 0.0946 0.1148 REMARK 3 17 1.1337 - 1.1110 0.97 6480 362 0.0981 0.1141 REMARK 3 18 1.1110 - 1.0900 0.96 6539 349 0.1033 0.1095 REMARK 3 19 1.0900 - 1.0706 0.97 6473 347 0.1040 0.1219 REMARK 3 20 1.0706 - 1.0524 0.96 6456 372 0.1113 0.1345 REMARK 3 21 1.0524 - 1.0355 0.97 6537 333 0.1184 0.1293 REMARK 3 22 1.0355 - 1.0195 0.96 6517 331 0.1255 0.1498 REMARK 3 23 1.0195 - 1.0045 0.96 6473 333 0.1358 0.1494 REMARK 3 24 1.0045 - 0.9904 0.95 6459 319 0.1474 0.1573 REMARK 3 25 0.9904 - 0.9770 0.96 6415 342 0.1554 0.1653 REMARK 3 26 0.9770 - 0.9643 0.94 6341 321 0.1610 0.1774 REMARK 3 27 0.9643 - 0.9523 0.94 6337 337 0.1714 0.1783 REMARK 3 28 0.9523 - 0.9408 0.92 6184 313 0.1780 0.1881 REMARK 3 29 0.9408 - 0.9298 0.91 6078 315 0.1972 0.2195 REMARK 3 30 0.9298 - 0.9194 0.84 5717 288 0.2196 0.2396 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.060 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 11.610 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.02 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.017 2475 REMARK 3 ANGLE : 1.311 3352 REMARK 3 CHIRALITY : 0.080 349 REMARK 3 PLANARITY : 0.008 431 REMARK 3 DIHEDRAL : 12.775 961 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4HNO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-OCT-12. REMARK 100 THE DEPOSITION ID IS D_1000075692. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUL-99 REMARK 200 TEMPERATURE (KELVIN) : 90 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.78 REMARK 200 MONOCHROMATOR : MIRRORS POLAR 0.000 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 204938 REMARK 200 RESOLUTION RANGE HIGH (A) : 0.919 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 5.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.9 REMARK 200 DATA REDUNDANCY : 2.840 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05300 REMARK 200 FOR THE DATA SET : 10.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 0.92 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 0.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.42000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: EPMR 2.1 REMARK 200 STARTING MODEL: PDB ENTRY 1QTW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM TRIS-HCL PH 9.0, 4 MM DTT, 1.5% REMARK 280 SATURATED MGSO4, 16% ETHYLENE GLYCOL, 20% MPEG2K, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 11.79833 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 23.59667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 17.69750 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 29.49583 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 5.89917 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 CG SD CE REMARK 470 GLU A 285 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS A 156 O HOH A 695 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 38 -152.27 -146.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 69 NE2 REMARK 620 2 HIS A 109 NE2 107.0 REMARK 620 3 GLU A 144 OE2 104.8 95.8 REMARK 620 4 HOH A 786 O 116.1 122.4 107.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 304 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 144 OE1 REMARK 620 2 ASP A 178 OD1 91.2 REMARK 620 3 HIS A 215 ND1 90.1 109.1 REMARK 620 4 GLU A 260 OE1 175.6 90.0 85.5 REMARK 620 5 HOH A 786 O 89.6 137.1 113.7 92.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 305 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 144 OE1 REMARK 620 2 ASP A 178 OD1 93.5 REMARK 620 3 HIS A 215 ND1 94.9 117.7 REMARK 620 4 GLU A 260 OE1 172.7 90.6 88.6 REMARK 620 5 HOH A 786 O 85.7 129.3 112.8 87.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 302 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 181 NE2 REMARK 620 2 ASP A 228 OD2 92.6 REMARK 620 3 HIS A 230 NE2 106.2 97.1 REMARK 620 4 TRS A 307 N 151.0 97.2 99.7 REMARK 620 5 TRS A 307 O1 89.4 167.3 94.4 75.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 303 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 181 NE2 REMARK 620 2 ASP A 228 OD2 93.1 REMARK 620 3 HIS A 230 NE2 116.2 99.5 REMARK 620 4 TRS A 307 N 143.9 90.1 98.7 REMARK 620 5 TRS A 307 O1 92.1 156.7 98.6 72.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 306 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 613 O REMARK 620 2 HOH A 717 O 88.0 REMARK 620 3 HOH A 754 O 87.2 93.5 REMARK 620 4 HOH A 780 O 92.9 176.4 83.1 REMARK 620 5 HOH A 824 O 91.2 94.3 172.0 89.2 REMARK 620 6 HOH A 826 O 173.0 88.2 87.1 90.7 94.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRS A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 310 DBREF 4HNO A 2 285 UNP Q9WYJ7 END4_THEMA 2 285 SEQADV 4HNO GLY A -2 UNP Q9WYJ7 EXPRESSION TAG SEQADV 4HNO SER A -1 UNP Q9WYJ7 EXPRESSION TAG SEQADV 4HNO HIS A 0 UNP Q9WYJ7 EXPRESSION TAG SEQADV 4HNO MET A 1 UNP Q9WYJ7 EXPRESSION TAG SEQRES 1 A 288 GLY SER HIS MET ILE LYS ILE GLY ALA HIS MET PRO ILE SEQRES 2 A 288 SER LYS GLY PHE ASP ARG VAL PRO GLN ASP THR VAL ASN SEQRES 3 A 288 ILE GLY GLY ASN SER PHE GLN ILE PHE PRO HIS ASN ALA SEQRES 4 A 288 ARG SER TRP SER ALA LYS LEU PRO SER ASP GLU ALA ALA SEQRES 5 A 288 THR LYS PHE LYS ARG GLU MET LYS LYS HIS GLY ILE ASP SEQRES 6 A 288 TRP GLU ASN ALA PHE CYS HIS SER GLY TYR LEU ILE ASN SEQRES 7 A 288 LEU ALA SER PRO LYS ASP ASP ILE TRP GLN LYS SER VAL SEQRES 8 A 288 GLU LEU LEU LYS LYS GLU VAL GLU ILE CYS ARG LYS LEU SEQRES 9 A 288 GLY ILE ARG TYR LEU ASN ILE HIS PRO GLY SER HIS LEU SEQRES 10 A 288 GLY THR GLY GLU GLU GLU GLY ILE ASP ARG ILE VAL ARG SEQRES 11 A 288 GLY LEU ASN GLU VAL LEU ASN ASN THR GLU GLY VAL VAL SEQRES 12 A 288 ILE LEU LEU GLU ASN VAL SER GLN LYS GLY GLY ASN ILE SEQRES 13 A 288 GLY TYR LYS LEU GLU GLN LEU LYS LYS ILE ARG ASP LEU SEQRES 14 A 288 VAL ASP GLN ARG ASP ARG VAL ALA ILE THR TYR ASP THR SEQRES 15 A 288 CYS HIS GLY PHE ASP SER GLY TYR ASP ILE THR LYS LYS SEQRES 16 A 288 GLU GLY VAL GLU ALA LEU LEU ASN GLU ILE GLU SER LEU SEQRES 17 A 288 PHE GLY LEU GLU ARG LEU LYS MET ILE HIS LEU ASN ASP SEQRES 18 A 288 SER LYS TYR PRO LEU GLY ALA ALA LYS ASP ARG HIS GLU SEQRES 19 A 288 ARG ILE GLY SER GLY PHE ILE GLY GLU GLU GLY PHE ALA SEQRES 20 A 288 VAL PHE PHE SER PHE LYS GLU ILE GLN GLU VAL PRO TRP SEQRES 21 A 288 ILE LEU GLU THR PRO GLY GLY ASN GLU GLU HIS ALA GLU SEQRES 22 A 288 ASP ILE LYS LYS VAL PHE GLU ILE ILE GLU LYS PHE GLY SEQRES 23 A 288 ILE GLU HET ZN A 301 1 HET MN A 302 1 HET ZN A 303 1 HET MN A 304 1 HET ZN A 305 1 HET MG A 306 1 HET TRS A 307 38 HET EDO A 308 8 HET EDO A 309 10 HET SO4 A 310 5 HETNAM ZN ZINC ION HETNAM MN MANGANESE (II) ION HETNAM MG MAGNESIUM ION HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETNAM EDO 1,2-ETHANEDIOL HETNAM SO4 SULFATE ION HETSYN TRS TRIS BUFFER HETSYN EDO ETHYLENE GLYCOL FORMUL 2 ZN 3(ZN 2+) FORMUL 3 MN 2(MN 2+) FORMUL 7 MG MG 2+ FORMUL 8 TRS C4 H12 N O3 1+ FORMUL 9 EDO 2(C2 H6 O2) FORMUL 11 SO4 O4 S 2- FORMUL 12 HOH *427(H2 O) HELIX 1 1 GLY A 13 ASP A 15 5 3 HELIX 2 2 ARG A 16 ILE A 24 1 9 HELIX 3 3 SER A 45 HIS A 59 1 15 HELIX 4 4 ASP A 62 GLU A 64 5 3 HELIX 5 5 LYS A 80 GLY A 102 1 23 HELIX 6 6 GLY A 117 ASN A 134 1 18 HELIX 7 7 LYS A 156 VAL A 167 1 12 HELIX 8 8 GLN A 169 ASP A 171 5 3 HELIX 9 9 THR A 179 SER A 185 1 7 HELIX 10 10 LYS A 191 PHE A 206 1 16 HELIX 11 11 GLY A 207 GLU A 209 5 3 HELIX 12 12 ILE A 238 SER A 248 1 11 HELIX 13 13 PHE A 249 GLU A 254 1 6 HELIX 14 14 GLY A 264 PHE A 282 1 19 SHEET 1 A 9 ILE A 4 HIS A 7 0 SHEET 2 A 9 SER A 28 ILE A 31 1 O GLN A 30 N ALA A 6 SHEET 3 A 9 ALA A 66 HIS A 69 1 O HIS A 69 N ILE A 31 SHEET 4 A 9 TYR A 105 ILE A 108 1 O ASN A 107 N CYS A 68 SHEET 5 A 9 VAL A 140 GLU A 144 1 O LEU A 142 N ILE A 108 SHEET 6 A 9 VAL A 173 ASP A 178 1 O ALA A 174 N LEU A 143 SHEET 7 A 9 LEU A 211 LEU A 216 1 O LYS A 212 N ILE A 175 SHEET 8 A 9 TRP A 257 LEU A 259 1 O ILE A 258 N ILE A 214 SHEET 9 A 9 ILE A 4 HIS A 7 1 N GLY A 5 O LEU A 259 SHEET 1 B 2 GLY A 111 SER A 112 0 SHEET 2 B 2 ASN A 152 ILE A 153 -1 O ILE A 153 N GLY A 111 SHEET 1 C 2 ASP A 218 SER A 219 0 SHEET 2 C 2 HIS A 230 GLU A 231 -1 O GLU A 231 N ASP A 218 LINK NE2 HIS A 69 ZN ZN A 301 1555 1555 2.05 LINK NE2 HIS A 109 ZN ZN A 301 1555 1555 1.99 LINK OE2 GLU A 144 ZN ZN A 301 1555 1555 2.02 LINK OE1 GLU A 144 MN C MN A 304 1555 1555 2.15 LINK OE1 GLU A 144 ZN D ZN A 305 1555 1555 2.12 LINK OD1 ASP A 178 MN C MN A 304 1555 1555 2.05 LINK OD1 ASP A 178 ZN D ZN A 305 1555 1555 1.99 LINK NE2 HIS A 181 MN A MN A 302 1555 1555 2.07 LINK NE2 HIS A 181 ZN B ZN A 303 1555 1555 1.98 LINK ND1 HIS A 215 MN C MN A 304 1555 1555 2.24 LINK ND1 HIS A 215 ZN D ZN A 305 1555 1555 2.09 LINK OD2 ASP A 228 MN A MN A 302 1555 1555 2.03 LINK OD2 ASP A 228 ZN B ZN A 303 1555 1555 2.11 LINK NE2 HIS A 230 MN A MN A 302 1555 1555 2.14 LINK NE2 HIS A 230 ZN B ZN A 303 1555 1555 1.99 LINK OE1 GLU A 260 MN C MN A 304 1555 1555 2.11 LINK OE1 GLU A 260 ZN D ZN A 305 1555 1555 2.14 LINK ZN ZN A 301 O HOH A 786 1555 1555 1.92 LINK MN A MN A 302 N ATRS A 307 1555 1555 2.02 LINK MN A MN A 302 O1 ATRS A 307 1555 1555 2.34 LINK ZN B ZN A 303 N BTRS A 307 1555 1555 2.20 LINK ZN B ZN A 303 O1 BTRS A 307 1555 1555 2.33 LINK MN C MN A 304 O HOH A 786 1555 1555 1.95 LINK ZN D ZN A 305 O HOH A 786 1555 1555 2.13 LINK MG MG A 306 O HOH A 613 1555 1555 2.17 LINK MG MG A 306 O HOH A 717 1555 1555 2.04 LINK MG MG A 306 O HOH A 754 1555 1555 2.07 LINK MG MG A 306 O HOH A 780 1555 1555 2.05 LINK MG MG A 306 O HOH A 824 1555 1555 2.06 LINK MG MG A 306 O HOH A 826 1555 1555 2.10 SITE 1 AC1 6 HIS A 69 HIS A 109 GLU A 144 MN A 304 SITE 2 AC1 6 ZN A 305 HOH A 786 SITE 1 AC2 5 HIS A 181 ASP A 228 HIS A 230 TRS A 307 SITE 2 AC2 5 EDO A 308 SITE 1 AC3 5 HIS A 181 ASP A 228 HIS A 230 TRS A 307 SITE 2 AC3 5 EDO A 308 SITE 1 AC4 9 GLU A 144 ASP A 178 HIS A 181 HIS A 215 SITE 2 AC4 9 GLU A 260 ZN A 301 TRS A 307 EDO A 308 SITE 3 AC4 9 HOH A 786 SITE 1 AC5 6 GLU A 144 ASP A 178 HIS A 215 GLU A 260 SITE 2 AC5 6 ZN A 301 HOH A 786 SITE 1 AC6 6 HOH A 613 HOH A 717 HOH A 754 HOH A 780 SITE 2 AC6 6 HOH A 824 HOH A 826 SITE 1 AC7 14 TYR A 72 HIS A 109 HIS A 181 ASP A 228 SITE 2 AC7 14 HIS A 230 MN A 302 ZN A 303 MN A 304 SITE 3 AC7 14 HOH A 614 HOH A 688 HOH A 701 HOH A 711 SITE 4 AC7 14 HOH A 786 HOH A 823 SITE 1 AC8 10 TYR A 72 HIS A 181 ASP A 228 HIS A 230 SITE 2 AC8 10 MN A 302 ZN A 303 MN A 304 HOH A 614 SITE 3 AC8 10 HOH A 786 HOH A 823 SITE 1 AC9 4 ARG A 127 ASP A 188 THR A 190 HOH A 411 SITE 1 BC1 8 GLU A 47 LYS A 51 ARG A 54 LYS A 220 SITE 2 BC1 8 HOH A 722 HOH A 747 HOH A 750 HOH A 810 CRYST1 123.370 123.370 35.395 90.00 90.00 120.00 P 61 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008106 0.004680 0.000000 0.00000 SCALE2 0.000000 0.009360 0.000000 0.00000 SCALE3 0.000000 0.000000 0.028253 0.00000