data_4HP1 # _entry.id 4HP1 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.389 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4HP1 pdb_00004hp1 10.2210/pdb4hp1/pdb NDB NA2109 ? ? RCSB RCSB075740 ? ? WWPDB D_1000075740 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-12-05 2 'Structure model' 1 1 2012-12-19 3 'Structure model' 1 2 2024-02-28 4 'Structure model' 1 3 2024-04-03 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_struct_conn_angle 5 3 'Structure model' struct_conn 6 3 'Structure model' struct_ref_seq_dif 7 3 'Structure model' struct_site 8 4 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 4 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 5 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 6 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 7 3 'Structure model' '_pdbx_struct_conn_angle.value' 8 3 'Structure model' '_struct_conn.pdbx_dist_value' 9 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 10 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 11 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 12 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 13 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 14 3 'Structure model' '_struct_ref_seq_dif.details' 15 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 16 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 17 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.entry_id 4HP1 _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2012-10-23 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 4HP3 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Chao, X.' 1 'Tempel, W.' 2 'Bian, C.' 3 'Bountra, C.' 4 'Arrowsmith, C.H.' 5 'Edwards, A.M.' 6 'Min, J.' 7 'Structural Genomics Consortium (SGC)' 8 # _citation.id primary _citation.title 'Tet3 CXXC Domain and Dioxygenase Activity Cooperatively Regulate Key Genes for Xenopus Eye and Neural Development.' _citation.journal_abbrev 'Cell(Cambridge,Mass.)' _citation.journal_volume 151 _citation.page_first 1200 _citation.page_last 1213 _citation.year 2012 _citation.journal_id_ASTM CELLB5 _citation.country US _citation.journal_id_ISSN 0092-8674 _citation.journal_id_CSD 0998 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23217707 _citation.pdbx_database_id_DOI 10.1016/j.cell.2012.11.014 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Xu, Y.' 1 ? primary 'Xu, C.' 2 ? primary 'Kato, A.' 3 ? primary 'Tempel, W.' 4 ? primary 'Abreu, J.G.' 5 ? primary 'Bian, C.' 6 ? primary 'Hu, Y.' 7 ? primary 'Hu, D.' 8 ? primary 'Zhao, B.' 9 ? primary 'Cerovina, T.' 10 ? primary 'Diao, J.' 11 ? primary 'Wu, F.' 12 ? primary 'He, H.H.' 13 ? primary 'Cui, Q.' 14 ? primary 'Clark, E.' 15 ? primary 'Ma, C.' 16 ? primary 'Barbara, A.' 17 ? primary 'Veenstra, G.J.' 18 ? primary 'Xu, G.' 19 ? primary 'Kaiser, U.B.' 20 ? primary 'Liu, X.S.' 21 ? primary 'Sugrue, S.P.' 22 ? primary 'He, X.' 23 ? primary 'Min, J.' 24 ? primary 'Kato, Y.' 25 ? primary 'Shi, Y.G.' 26 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*GP*CP*CP*AP*CP*(5CM)P*GP*GP*TP*GP*GP*C)-3') ; 3678.407 2 ? ? ? ? 2 polymer man 'LOC100036628 protein' 8430.049 1 ? ? ? ? 3 non-polymer syn 'ZINC ION' 65.409 2 ? ? ? ? 4 water nat water 18.015 10 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no yes '(DG)(DC)(DC)(DA)(DC)(5CM)(DG)(DG)(DT)(DG)(DG)(DC)' GCCACCGGTGGC A,B ? 2 'polypeptide(L)' no no MHHHHHHSSGRENLYFQGSNKKRKRCGVCVPCLRKEPCGACYNCVNRSTSHQICKMRKCEQLKKKRVVPMKG MHHHHHHSSGRENLYFQGSNKKRKRCGVCVPCLRKEPCGACYNCVNRSTSHQICKMRKCEQLKKKRVVPMKG C ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'ZINC ION' ZN 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DC n 1 3 DC n 1 4 DA n 1 5 DC n 1 6 5CM n 1 7 DG n 1 8 DG n 1 9 DT n 1 10 DG n 1 11 DG n 1 12 DC n 2 1 MET n 2 2 HIS n 2 3 HIS n 2 4 HIS n 2 5 HIS n 2 6 HIS n 2 7 HIS n 2 8 SER n 2 9 SER n 2 10 GLY n 2 11 ARG n 2 12 GLU n 2 13 ASN n 2 14 LEU n 2 15 TYR n 2 16 PHE n 2 17 GLN n 2 18 GLY n 2 19 SER n 2 20 ASN n 2 21 LYS n 2 22 LYS n 2 23 ARG n 2 24 LYS n 2 25 ARG n 2 26 CYS n 2 27 GLY n 2 28 VAL n 2 29 CYS n 2 30 VAL n 2 31 PRO n 2 32 CYS n 2 33 LEU n 2 34 ARG n 2 35 LYS n 2 36 GLU n 2 37 PRO n 2 38 CYS n 2 39 GLY n 2 40 ALA n 2 41 CYS n 2 42 TYR n 2 43 ASN n 2 44 CYS n 2 45 VAL n 2 46 ASN n 2 47 ARG n 2 48 SER n 2 49 THR n 2 50 SER n 2 51 HIS n 2 52 GLN n 2 53 ILE n 2 54 CYS n 2 55 LYS n 2 56 MET n 2 57 ARG n 2 58 LYS n 2 59 CYS n 2 60 GLU n 2 61 GLN n 2 62 LEU n 2 63 LYS n 2 64 LYS n 2 65 LYS n 2 66 ARG n 2 67 VAL n 2 68 VAL n 2 69 PRO n 2 70 MET n 2 71 LYS n 2 72 GLY n # _entity_src_gen.entity_id 2 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'Western clawed frog' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'tet3, LOC100036628' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Xenopus (Silurana) tropicalis' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 8364 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 511693 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain BL21-V2R-pRARE2 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET28-MHL _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 5CM 'DNA linking' n "5-METHYL-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE" ? 'C10 H16 N3 O7 P' 321.224 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 1 1 DG DG A . n A 1 2 DC 2 2 2 DC DC A . n A 1 3 DC 3 3 3 DC DC A . n A 1 4 DA 4 4 4 DA DA A . n A 1 5 DC 5 5 5 DC DC A . n A 1 6 5CM 6 6 6 5CM 5CM A . n A 1 7 DG 7 7 7 DG DG A . n A 1 8 DG 8 8 8 DG DG A . n A 1 9 DT 9 9 9 DT DT A . n A 1 10 DG 10 10 10 DG DG A . n A 1 11 DG 11 11 11 DG DG A . n A 1 12 DC 12 12 12 DC DC A . n B 1 1 DG 1 1 1 DG DG B . n B 1 2 DC 2 2 2 DC DC B . n B 1 3 DC 3 3 3 DC DC B . n B 1 4 DA 4 4 4 DA DA B . n B 1 5 DC 5 5 5 DC DC B . n B 1 6 5CM 6 6 6 5CM 5CM B . n B 1 7 DG 7 7 7 DG DG B . n B 1 8 DG 8 8 8 DG DG B . n B 1 9 DT 9 9 9 DT DT B . n B 1 10 DG 10 10 10 DG DG B . n B 1 11 DG 11 11 11 DG DG B . n B 1 12 DC 12 12 12 DC DC B . n C 2 1 MET 1 40 ? ? ? C . n C 2 2 HIS 2 41 ? ? ? C . n C 2 3 HIS 3 42 ? ? ? C . n C 2 4 HIS 4 43 ? ? ? C . n C 2 5 HIS 5 44 ? ? ? C . n C 2 6 HIS 6 45 ? ? ? C . n C 2 7 HIS 7 46 ? ? ? C . n C 2 8 SER 8 47 ? ? ? C . n C 2 9 SER 9 48 ? ? ? C . n C 2 10 GLY 10 49 ? ? ? C . n C 2 11 ARG 11 50 ? ? ? C . n C 2 12 GLU 12 51 ? ? ? C . n C 2 13 ASN 13 52 ? ? ? C . n C 2 14 LEU 14 53 ? ? ? C . n C 2 15 TYR 15 54 ? ? ? C . n C 2 16 PHE 16 55 ? ? ? C . n C 2 17 GLN 17 56 ? ? ? C . n C 2 18 GLY 18 57 ? ? ? C . n C 2 19 SER 19 58 ? ? ? C . n C 2 20 ASN 20 59 59 ASN ASN C . n C 2 21 LYS 21 60 60 LYS LYS C . n C 2 22 LYS 22 61 61 LYS LYS C . n C 2 23 ARG 23 62 62 ARG ARG C . n C 2 24 LYS 24 63 63 LYS LYS C . n C 2 25 ARG 25 64 64 ARG ARG C . n C 2 26 CYS 26 65 65 CYS CYS C . n C 2 27 GLY 27 66 66 GLY GLY C . n C 2 28 VAL 28 67 67 VAL VAL C . n C 2 29 CYS 29 68 68 CYS CYS C . n C 2 30 VAL 30 69 69 VAL VAL C . n C 2 31 PRO 31 70 70 PRO PRO C . n C 2 32 CYS 32 71 71 CYS CYS C . n C 2 33 LEU 33 72 72 LEU LEU C . n C 2 34 ARG 34 73 73 ARG ARG C . n C 2 35 LYS 35 74 74 LYS LYS C . n C 2 36 GLU 36 75 75 GLU GLU C . n C 2 37 PRO 37 76 76 PRO PRO C . n C 2 38 CYS 38 77 77 CYS CYS C . n C 2 39 GLY 39 78 78 GLY GLY C . n C 2 40 ALA 40 79 79 ALA ALA C . n C 2 41 CYS 41 80 80 CYS CYS C . n C 2 42 TYR 42 81 81 TYR TYR C . n C 2 43 ASN 43 82 82 ASN ASN C . n C 2 44 CYS 44 83 83 CYS CYS C . n C 2 45 VAL 45 84 84 VAL VAL C . n C 2 46 ASN 46 85 85 ASN ASN C . n C 2 47 ARG 47 86 86 ARG ARG C . n C 2 48 SER 48 87 87 SER SER C . n C 2 49 THR 49 88 88 THR THR C . n C 2 50 SER 50 89 89 SER SER C . n C 2 51 HIS 51 90 90 HIS HIS C . n C 2 52 GLN 52 91 91 GLN GLN C . n C 2 53 ILE 53 92 92 ILE ILE C . n C 2 54 CYS 54 93 93 CYS CYS C . n C 2 55 LYS 55 94 94 LYS LYS C . n C 2 56 MET 56 95 95 MET MET C . n C 2 57 ARG 57 96 96 ARG ARG C . n C 2 58 LYS 58 97 97 LYS LYS C . n C 2 59 CYS 59 98 98 CYS CYS C . n C 2 60 GLU 60 99 99 GLU GLU C . n C 2 61 GLN 61 100 100 GLN GLN C . n C 2 62 LEU 62 101 101 LEU LEU C . n C 2 63 LYS 63 102 102 LYS LYS C . n C 2 64 LYS 64 103 103 LYS LYS C . n C 2 65 LYS 65 104 104 LYS LYS C . n C 2 66 ARG 66 105 105 ARG ARG C . n C 2 67 VAL 67 106 106 VAL VAL C . n C 2 68 VAL 68 107 107 VAL VAL C . n C 2 69 PRO 69 108 108 PRO PRO C . n C 2 70 MET 70 109 109 MET MET C . n C 2 71 LYS 71 110 ? ? ? C . n C 2 72 GLY 72 111 ? ? ? C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 ZN 1 201 1 ZN ZN C . E 3 ZN 1 202 2 ZN ZN C . F 4 HOH 1 101 5 HOH HOH A . F 4 HOH 2 102 10 HOH HOH A . G 4 HOH 1 101 2 HOH HOH B . H 4 HOH 1 301 1 HOH HOH C . H 4 HOH 2 302 3 HOH HOH C . H 4 HOH 3 303 4 HOH HOH C . H 4 HOH 4 304 6 HOH HOH C . H 4 HOH 5 305 7 HOH HOH C . H 4 HOH 6 306 8 HOH HOH C . H 4 HOH 7 307 9 HOH HOH C . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A DG 1 ? "O5'" ? A DG 1 "O5'" 2 1 Y 1 C LYS 60 ? CG ? C LYS 21 CG 3 1 Y 1 C LYS 60 ? CD ? C LYS 21 CD 4 1 Y 1 C LYS 60 ? CE ? C LYS 21 CE 5 1 Y 1 C LYS 60 ? NZ ? C LYS 21 NZ 6 1 Y 1 C LYS 63 ? NZ ? C LYS 24 NZ 7 1 Y 1 C LYS 74 ? CD ? C LYS 35 CD 8 1 Y 1 C LYS 74 ? CE ? C LYS 35 CE 9 1 Y 1 C LYS 74 ? NZ ? C LYS 35 NZ 10 1 Y 1 C ARG 86 ? CG ? C ARG 47 CG 11 1 Y 1 C ARG 86 ? CD ? C ARG 47 CD 12 1 Y 1 C ARG 86 ? NE ? C ARG 47 NE 13 1 Y 1 C ARG 86 ? CZ ? C ARG 47 CZ 14 1 Y 1 C ARG 86 ? NH1 ? C ARG 47 NH1 15 1 Y 1 C ARG 86 ? NH2 ? C ARG 47 NH2 16 1 Y 1 C LYS 94 ? NZ ? C LYS 55 NZ 17 1 Y 1 C LYS 104 ? CD ? C LYS 65 CD 18 1 Y 1 C LYS 104 ? CE ? C LYS 65 CE 19 1 Y 1 C LYS 104 ? NZ ? C LYS 65 NZ 20 1 Y 1 C VAL 106 ? CG1 ? C VAL 67 CG1 21 1 Y 1 C VAL 106 ? CG2 ? C VAL 67 CG2 22 1 Y 1 C VAL 107 ? CG1 ? C VAL 68 CG1 23 1 Y 1 C VAL 107 ? CG2 ? C VAL 68 CG2 # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 SCALA CCP4_3.3.20 2011/05/18 other 'Phil R. Evans' pre@mrc-lmb.cam.ac.uk 'data scaling' http://www.ccp4.ac.uk/dist/html/scala.html Fortran_77 ? 2 PHASER . ? program 'Randy J. Read' cimr-phaser@lists.cam.ac.uk phasing http://www-structmed.cimr.cam.ac.uk/phaser/ ? ? 3 REFMAC 5.7.0027 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 4 PDB_EXTRACT 3.11 'August 3, 2011' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 5 XDS . ? ? ? ? 'data reduction' ? ? ? # _cell.length_a 71.027 _cell.length_b 39.517 _cell.length_c 57.634 _cell.angle_alpha 90.000 _cell.angle_beta 91.030 _cell.angle_gamma 90.000 _cell.entry_id 4HP1 _cell.pdbx_unique_axis ? _cell.Z_PDB 8 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4HP1 _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.Int_Tables_number 5 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # _exptl.crystals_number 1 _exptl.entry_id 4HP1 _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_percent_sol 51.98 _exptl_crystal.density_Matthews 2.56 _exptl_crystal.density_meas ? _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.temp 291 _exptl_crystal_grow.pdbx_details '30% PEG-1500, 0.2M sodium chloride, 0.1M HEPES, 5% MPD, pH 7.5, vapor diffusion, sitting drop, temperature 291K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 300 mm CCD' _diffrn_detector.pdbx_collection_date 2012-01-26 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97949 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'CLSI BEAMLINE 08ID-1' _diffrn_source.pdbx_wavelength_list 0.97949 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site CLSI _diffrn_source.pdbx_synchrotron_beamline 08ID-1 # _reflns.d_resolution_low 35.51 _reflns.d_resolution_high 2.25 _reflns.number_all ? _reflns.pdbx_Rmerge_I_obs 0.046 _reflns.pdbx_netI_over_sigmaI 14.6771 _reflns.percent_possible_obs 99.90 _reflns.pdbx_redundancy 4.12 _reflns.entry_id 4HP1 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.number_obs 7738 _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_low _reflns_shell.d_res_high _reflns_shell.number_measured_all _reflns_shell.number_unique_all _reflns_shell.Rmerge_I_obs _reflns_shell.percent_possible_all _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.number_measured_obs _reflns_shell.number_unique_obs _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2.37 2.25 4628 1110 0.49 100.00 4.17 ? ? ? ? ? ? 1 1 2.52 2.37 4434 1058 0.23 99.90 4.19 ? ? ? ? ? ? 2 1 2.69 2.52 4147 994 0.16 100.00 4.17 ? ? ? ? ? ? 3 1 2.90 2.69 3971 947 0.09 99.89 4.19 ? ? ? ? ? ? 4 1 3.18 2.90 3509 840 0.06 99.94 4.18 ? ? ? ? ? ? 5 1 3.56 3.18 3233 781 0.03 99.80 4.14 ? ? ? ? ? ? 6 1 4.11 3.56 2848 700 0.04 99.93 4.07 ? ? ? ? ? ? 7 1 5.03 4.11 2318 586 0.04 100.00 3.96 ? ? ? ? ? ? 8 1 7.12 5.03 1806 462 0.04 99.77 3.91 ? ? ? ? ? ? 9 1 35.51 7.12 956 260 0.04 99.24 3.68 ? ? ? ? ? ? 10 1 # _refine.entry_id 4HP1 _refine.ls_d_res_high 2.2500 _refine.ls_d_res_low 35.0000 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.7810 _refine.ls_number_reflns_obs 7736 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. U VALUES WITH TLS ADDED. COOT and the MOLPROBITY server were also used during refinement. ; _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2210 _refine.ls_R_factor_R_work 0.2196 _refine.ls_wR_factor_R_work 0.2410 _refine.ls_R_factor_R_free 0.2502 _refine.ls_wR_factor_R_free 0.2760 _refine.ls_percent_reflns_R_free 4.5370 _refine.ls_number_reflns_R_free 351 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 70.5470 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] -2.0920 _refine.aniso_B[2][2] -3.4060 _refine.aniso_B[3][3] 5.4480 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] -1.3750 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9640 _refine.correlation_coeff_Fo_to_Fc_free 0.9540 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R 0.2410 _refine.pdbx_overall_ESU_R_Free 0.1980 _refine.overall_SU_ML 0.1890 _refine.overall_SU_B 14.1950 _refine.solvent_model_details 'MASK BULK SOLVENT' _refine.pdbx_solvent_vdw_probe_radii 1.2000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ;unpublished model of complex between same protein and DNA fragment. That structure was solved by a combination of zinc-SAD (SHELXD/E) and molecular replacement in "density" mode (MOLREP), using ideal DNA (COOT) and human MLL2 (currently unpublished) as search models. ; _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 128.140 _refine.B_iso_min 41.420 _refine.pdbx_overall_phase_error ? _refine.occupancy_max 1.000 _refine.occupancy_min 0.500 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 383 _refine_hist.pdbx_number_atoms_nucleic_acid 487 _refine_hist.pdbx_number_atoms_ligand 2 _refine_hist.number_atoms_solvent 10 _refine_hist.number_atoms_total 882 _refine_hist.d_res_high 2.2500 _refine_hist.d_res_low 35.0000 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 944 0.012 0.015 ? ? 'X-RAY DIFFRACTION' r_bond_other_d 657 0.003 0.020 ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 1367 1.377 1.673 ? ? 'X-RAY DIFFRACTION' r_angle_other_deg 1518 1.155 3.011 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 50 5.478 5.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 15 33.295 22.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 80 15.397 15.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 5 17.228 15.000 ? ? 'X-RAY DIFFRACTION' r_chiral_restr 128 0.061 0.200 ? ? 'X-RAY DIFFRACTION' r_gen_planes_refined 730 0.008 0.020 ? ? 'X-RAY DIFFRACTION' r_gen_planes_other 217 0.001 0.020 ? ? 'X-RAY DIFFRACTION' # loop_ _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_low _refine_ls_shell.d_res_high _refine_ls_shell.number_reflns_all _refine_ls_shell.percent_reflns_obs _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.number_reflns_R_free _refine_ls_shell.R_factor_R_free _refine_ls_shell.number_reflns_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.R_factor_all _refine_ls_shell.pdbx_refine_id 20 2.308 2.250 565 100.000 539 0.467 26 0.466 . . . . . 'X-RAY DIFFRACTION' 20 2.371 2.308 538 100.000 515 0.442 23 0.575 . . . . . 'X-RAY DIFFRACTION' 20 2.440 2.371 537 99.814 512 0.380 24 0.528 . . . . . 'X-RAY DIFFRACTION' 20 2.514 2.440 522 99.808 498 0.364 23 0.405 . . . . . 'X-RAY DIFFRACTION' 20 2.596 2.514 507 100.000 488 0.339 19 0.459 . . . . . 'X-RAY DIFFRACTION' 20 2.687 2.596 486 100.000 458 0.324 28 0.371 . . . . . 'X-RAY DIFFRACTION' 20 2.788 2.687 473 100.000 455 0.315 18 0.327 . . . . . 'X-RAY DIFFRACTION' 20 2.901 2.788 469 99.787 445 0.292 23 0.359 . . . . . 'X-RAY DIFFRACTION' 20 3.029 2.901 427 100.000 404 0.262 23 0.347 . . . . . 'X-RAY DIFFRACTION' 20 3.175 3.029 417 99.760 395 0.257 21 0.258 . . . . . 'X-RAY DIFFRACTION' 20 3.346 3.175 406 99.754 393 0.198 12 0.217 . . . . . 'X-RAY DIFFRACTION' 20 3.547 3.346 367 99.455 350 0.198 15 0.252 . . . . . 'X-RAY DIFFRACTION' 20 3.789 3.547 357 99.720 346 0.214 10 0.173 . . . . . 'X-RAY DIFFRACTION' 20 4.088 3.789 341 100.000 321 0.183 20 0.249 . . . . . 'X-RAY DIFFRACTION' 20 4.472 4.088 310 100.000 293 0.157 17 0.211 . . . . . 'X-RAY DIFFRACTION' 20 4.990 4.472 285 100.000 273 0.167 12 0.176 . . . . . 'X-RAY DIFFRACTION' 20 5.743 4.990 249 99.598 237 0.172 11 0.167 . . . . . 'X-RAY DIFFRACTION' 20 6.986 5.743 212 100.000 202 0.192 10 0.221 . . . . . 'X-RAY DIFFRACTION' 20 9.689 6.986 171 99.415 160 0.172 10 0.279 . . . . . 'X-RAY DIFFRACTION' 20 35.000 9.689 106 100.000 100 0.178 6 0.161 . . . . . 'X-RAY DIFFRACTION' # _struct.entry_id 4HP1 _struct.title 'Crystal structure of Tet3 in complex with a non-CpG dsDNA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4HP1 _struct_keywords.text 'CXXC, DNA methylation, Structural Genomics, Structural Genomics Consortium, SGC, DNA BINDING PROTEIN-DNA complex' _struct_keywords.pdbx_keywords 'DNA BINDING PROTEIN/DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 3 ? F N N 4 ? G N N 4 ? H N N 4 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP A0JP82_XENTR A0JP82 2 SNKKRKRCGVCVPCLRKEPCGACYNCVNRSTSHQICKMRKCEQLKKKRVVPMKG 58 ? 2 PDB 4HP1 4HP1 1 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4HP1 C 19 ? 72 ? A0JP82 58 ? 111 ? 58 111 2 2 4HP1 A 1 ? 12 ? 4HP1 1 ? 12 ? 1 12 3 2 4HP1 B 1 ? 12 ? 4HP1 1 ? 12 ? 1 12 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4HP1 MET C 1 ? UNP A0JP82 ? ? 'expression tag' 40 1 1 4HP1 HIS C 2 ? UNP A0JP82 ? ? 'expression tag' 41 2 1 4HP1 HIS C 3 ? UNP A0JP82 ? ? 'expression tag' 42 3 1 4HP1 HIS C 4 ? UNP A0JP82 ? ? 'expression tag' 43 4 1 4HP1 HIS C 5 ? UNP A0JP82 ? ? 'expression tag' 44 5 1 4HP1 HIS C 6 ? UNP A0JP82 ? ? 'expression tag' 45 6 1 4HP1 HIS C 7 ? UNP A0JP82 ? ? 'expression tag' 46 7 1 4HP1 SER C 8 ? UNP A0JP82 ? ? 'expression tag' 47 8 1 4HP1 SER C 9 ? UNP A0JP82 ? ? 'expression tag' 48 9 1 4HP1 GLY C 10 ? UNP A0JP82 ? ? 'expression tag' 49 10 1 4HP1 ARG C 11 ? UNP A0JP82 ? ? 'expression tag' 50 11 1 4HP1 GLU C 12 ? UNP A0JP82 ? ? 'expression tag' 51 12 1 4HP1 ASN C 13 ? UNP A0JP82 ? ? 'expression tag' 52 13 1 4HP1 LEU C 14 ? UNP A0JP82 ? ? 'expression tag' 53 14 1 4HP1 TYR C 15 ? UNP A0JP82 ? ? 'expression tag' 54 15 1 4HP1 PHE C 16 ? UNP A0JP82 ? ? 'expression tag' 55 16 1 4HP1 GLN C 17 ? UNP A0JP82 ? ? 'expression tag' 56 17 1 4HP1 GLY C 18 ? UNP A0JP82 ? ? 'expression tag' 57 18 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4080 ? 1 MORE -11 ? 1 'SSA (A^2)' 7020 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details 'AUTHORS STATE THAT THE BIOLOGICAL ASSEMBLY IS UNKNOWN.' # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 CYS C 29 ? ARG C 34 ? CYS C 68 ARG C 73 1 ? 6 HELX_P HELX_P2 2 CYS C 41 ? ASN C 46 ? CYS C 80 ASN C 85 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A DC 5 "O3'" ? ? ? 1_555 A 5CM 6 P ? ? A DC 5 A 5CM 6 1_555 ? ? ? ? ? ? ? 1.611 ? ? covale2 covale both ? A 5CM 6 "O3'" ? ? ? 1_555 A DG 7 P ? ? A 5CM 6 A DG 7 1_555 ? ? ? ? ? ? ? 1.612 ? ? covale3 covale both ? B DC 5 "O3'" ? ? ? 1_555 B 5CM 6 P ? ? B DC 5 B 5CM 6 1_555 ? ? ? ? ? ? ? 1.590 ? ? covale4 covale both ? B 5CM 6 "O3'" ? ? ? 1_555 B DG 7 P ? ? B 5CM 6 B DG 7 1_555 ? ? ? ? ? ? ? 1.577 ? ? metalc1 metalc ? ? C CYS 26 SG ? ? ? 1_555 D ZN . ZN ? ? C CYS 65 C ZN 201 1_555 ? ? ? ? ? ? ? 2.331 ? ? metalc2 metalc ? ? C CYS 29 SG ? ? ? 1_555 D ZN . ZN ? ? C CYS 68 C ZN 201 1_555 ? ? ? ? ? ? ? 2.339 ? ? metalc3 metalc ? ? C CYS 32 SG ? ? ? 1_555 D ZN . ZN ? ? C CYS 71 C ZN 201 1_555 ? ? ? ? ? ? ? 2.303 ? ? metalc4 metalc ? ? C CYS 38 SG ? ? ? 1_555 E ZN . ZN ? ? C CYS 77 C ZN 202 1_555 ? ? ? ? ? ? ? 2.329 ? ? metalc5 metalc ? ? C CYS 41 SG ? ? ? 1_555 E ZN . ZN ? ? C CYS 80 C ZN 202 1_555 ? ? ? ? ? ? ? 2.324 ? ? metalc6 metalc ? ? C CYS 44 SG ? ? ? 1_555 E ZN . ZN ? ? C CYS 83 C ZN 202 1_555 ? ? ? ? ? ? ? 2.357 ? ? metalc7 metalc ? ? C CYS 54 SG ? ? ? 1_555 E ZN . ZN ? ? C CYS 93 C ZN 202 1_555 ? ? ? ? ? ? ? 2.357 ? ? metalc8 metalc ? ? C CYS 59 SG ? ? ? 1_555 D ZN . ZN ? ? C CYS 98 C ZN 201 1_555 ? ? ? ? ? ? ? 2.285 ? ? hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 B DC 12 N3 ? ? A DG 1 B DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 B DC 12 O2 ? ? A DG 1 B DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 1 O6 ? ? ? 1_555 B DC 12 N4 ? ? A DG 1 B DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DC 2 N3 ? ? ? 1_555 B DG 11 N1 ? ? A DC 2 B DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DC 2 N4 ? ? ? 1_555 B DG 11 O6 ? ? A DC 2 B DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DC 2 O2 ? ? ? 1_555 B DG 11 N2 ? ? A DC 2 B DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DC 3 N3 ? ? ? 1_555 B DG 10 N1 ? ? A DC 3 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 3 N4 ? ? ? 1_555 B DG 10 O6 ? ? A DC 3 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 3 O2 ? ? ? 1_555 B DG 10 N2 ? ? A DC 3 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DA 4 N1 ? ? ? 1_555 B DT 9 N3 ? ? A DA 4 B DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DA 4 N6 ? ? ? 1_555 B DT 9 O4 ? ? A DA 4 B DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DC 5 N3 ? ? ? 1_555 B DG 8 N1 ? ? A DC 5 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 5 N4 ? ? ? 1_555 B DG 8 O6 ? ? A DC 5 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 5 O2 ? ? ? 1_555 B DG 8 N2 ? ? A DC 5 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A 5CM 6 N3 ? ? ? 1_555 B DG 7 N1 ? ? A 5CM 6 B DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A 5CM 6 N4 ? ? ? 1_555 B DG 7 O6 ? ? A 5CM 6 B DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A 5CM 6 O2 ? ? ? 1_555 B DG 7 N2 ? ? A 5CM 6 B DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DG 7 N1 ? ? ? 1_555 B 5CM 6 N3 ? ? A DG 7 B 5CM 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DG 7 N2 ? ? ? 1_555 B 5CM 6 O2 ? ? A DG 7 B 5CM 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DG 7 O6 ? ? ? 1_555 B 5CM 6 N4 ? ? A DG 7 B 5CM 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DG 8 N1 ? ? ? 1_555 B DC 5 N3 ? ? A DG 8 B DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DG 8 N2 ? ? ? 1_555 B DC 5 O2 ? ? A DG 8 B DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DG 8 O6 ? ? ? 1_555 B DC 5 N4 ? ? A DG 8 B DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DT 9 N3 ? ? ? 1_555 B DA 4 N1 ? ? A DT 9 B DA 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DT 9 O4 ? ? ? 1_555 B DA 4 N6 ? ? A DT 9 B DA 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DG 10 N1 ? ? ? 1_555 B DC 3 N3 ? ? A DG 10 B DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DG 10 N2 ? ? ? 1_555 B DC 3 O2 ? ? A DG 10 B DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DG 10 O6 ? ? ? 1_555 B DC 3 N4 ? ? A DG 10 B DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DG 11 N1 ? ? ? 1_555 B DC 2 N3 ? ? A DG 11 B DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DG 11 N2 ? ? ? 1_555 B DC 2 O2 ? ? A DG 11 B DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A DG 11 O6 ? ? ? 1_555 B DC 2 N4 ? ? A DG 11 B DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A DC 12 N3 ? ? ? 1_555 B DG 1 N1 ? ? A DC 12 B DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A DC 12 N4 ? ? ? 1_555 B DG 1 O6 ? ? A DC 12 B DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A DC 12 O2 ? ? ? 1_555 B DG 1 N2 ? ? A DC 12 B DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 SG ? C CYS 26 ? C CYS 65 ? 1_555 ZN ? D ZN . ? C ZN 201 ? 1_555 SG ? C CYS 29 ? C CYS 68 ? 1_555 109.9 ? 2 SG ? C CYS 26 ? C CYS 65 ? 1_555 ZN ? D ZN . ? C ZN 201 ? 1_555 SG ? C CYS 32 ? C CYS 71 ? 1_555 116.1 ? 3 SG ? C CYS 29 ? C CYS 68 ? 1_555 ZN ? D ZN . ? C ZN 201 ? 1_555 SG ? C CYS 32 ? C CYS 71 ? 1_555 98.9 ? 4 SG ? C CYS 26 ? C CYS 65 ? 1_555 ZN ? D ZN . ? C ZN 201 ? 1_555 SG ? C CYS 59 ? C CYS 98 ? 1_555 108.8 ? 5 SG ? C CYS 29 ? C CYS 68 ? 1_555 ZN ? D ZN . ? C ZN 201 ? 1_555 SG ? C CYS 59 ? C CYS 98 ? 1_555 122.6 ? 6 SG ? C CYS 32 ? C CYS 71 ? 1_555 ZN ? D ZN . ? C ZN 201 ? 1_555 SG ? C CYS 59 ? C CYS 98 ? 1_555 100.4 ? 7 SG ? C CYS 38 ? C CYS 77 ? 1_555 ZN ? E ZN . ? C ZN 202 ? 1_555 SG ? C CYS 41 ? C CYS 80 ? 1_555 111.5 ? 8 SG ? C CYS 38 ? C CYS 77 ? 1_555 ZN ? E ZN . ? C ZN 202 ? 1_555 SG ? C CYS 44 ? C CYS 83 ? 1_555 114.4 ? 9 SG ? C CYS 41 ? C CYS 80 ? 1_555 ZN ? E ZN . ? C ZN 202 ? 1_555 SG ? C CYS 44 ? C CYS 83 ? 1_555 104.2 ? 10 SG ? C CYS 38 ? C CYS 77 ? 1_555 ZN ? E ZN . ? C ZN 202 ? 1_555 SG ? C CYS 54 ? C CYS 93 ? 1_555 107.0 ? 11 SG ? C CYS 41 ? C CYS 80 ? 1_555 ZN ? E ZN . ? C ZN 202 ? 1_555 SG ? C CYS 54 ? C CYS 93 ? 1_555 117.2 ? 12 SG ? C CYS 44 ? C CYS 83 ? 1_555 ZN ? E ZN . ? C ZN 202 ? 1_555 SG ? C CYS 54 ? C CYS 93 ? 1_555 102.4 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software C ZN 201 ? 4 'BINDING SITE FOR RESIDUE ZN C 201' AC2 Software C ZN 202 ? 4 'BINDING SITE FOR RESIDUE ZN C 202' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 CYS C 26 ? CYS C 65 . ? 1_555 ? 2 AC1 4 CYS C 29 ? CYS C 68 . ? 1_555 ? 3 AC1 4 CYS C 32 ? CYS C 71 . ? 1_555 ? 4 AC1 4 CYS C 59 ? CYS C 98 . ? 1_555 ? 5 AC2 4 CYS C 38 ? CYS C 77 . ? 1_555 ? 6 AC2 4 CYS C 41 ? CYS C 80 . ? 1_555 ? 7 AC2 4 CYS C 44 ? CYS C 83 . ? 1_555 ? 8 AC2 4 CYS C 54 ? CYS C 93 . ? 1_555 ? # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name ? _pdbx_SG_project.full_name_of_center 'Structural Genomics Consortium' _pdbx_SG_project.initial_of_center SGC # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A 5CM 6 A 5CM 6 ? DC ? 2 B 5CM 6 B 5CM 6 ? DC ? # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 21.2959 0.3332 9.2652 0.4839 0.5631 0.3110 -0.2503 -0.0562 -0.0483 9.2194 10.0492 5.9178 4.6015 -0.7036 -1.7156 -0.4552 0.2957 0.1595 1.3601 0.0956 -0.4826 -0.5914 -0.1728 0.4087 'X-RAY DIFFRACTION' 2 ? refined 22.0503 -1.0194 9.7846 0.4996 0.5766 0.3125 -0.2011 0.0040 -0.0722 15.9835 8.4588 4.3401 7.2740 0.6816 -0.0316 -0.0407 -0.0616 0.1023 -0.0128 0.1235 -0.4126 -0.0092 -0.3767 0.4751 'X-RAY DIFFRACTION' 3 ? refined 17.0095 -2.4406 21.3559 0.5320 0.1555 0.2993 -0.1071 -0.0218 -0.0365 4.5889 7.6649 9.7911 -0.4331 1.7374 -0.3340 -0.2312 0.1989 0.0324 0.5210 -0.1007 -0.2583 -0.0583 0.0994 0.2059 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 1 A 12 ? . . . . ? 'X-RAY DIFFRACTION' 2 2 B 1 B 12 ? . . . . ? 'X-RAY DIFFRACTION' 3 3 C 59 C 109 ? . . . . ? # _phasing.method MR # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 C MET 40 ? C MET 1 2 1 Y 1 C HIS 41 ? C HIS 2 3 1 Y 1 C HIS 42 ? C HIS 3 4 1 Y 1 C HIS 43 ? C HIS 4 5 1 Y 1 C HIS 44 ? C HIS 5 6 1 Y 1 C HIS 45 ? C HIS 6 7 1 Y 1 C HIS 46 ? C HIS 7 8 1 Y 1 C SER 47 ? C SER 8 9 1 Y 1 C SER 48 ? C SER 9 10 1 Y 1 C GLY 49 ? C GLY 10 11 1 Y 1 C ARG 50 ? C ARG 11 12 1 Y 1 C GLU 51 ? C GLU 12 13 1 Y 1 C ASN 52 ? C ASN 13 14 1 Y 1 C LEU 53 ? C LEU 14 15 1 Y 1 C TYR 54 ? C TYR 15 16 1 Y 1 C PHE 55 ? C PHE 16 17 1 Y 1 C GLN 56 ? C GLN 17 18 1 Y 1 C GLY 57 ? C GLY 18 19 1 Y 1 C SER 58 ? C SER 19 20 1 Y 1 C LYS 110 ? C LYS 71 21 1 Y 1 C GLY 111 ? C GLY 72 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 5CM N1 N N N 1 5CM C2 C N N 2 5CM N3 N N N 3 5CM C4 C N N 4 5CM C5 C N N 5 5CM C5A C N N 6 5CM C6 C N N 7 5CM O2 O N N 8 5CM N4 N N N 9 5CM "C1'" C N R 10 5CM "C2'" C N N 11 5CM "C3'" C N S 12 5CM "C4'" C N R 13 5CM "O4'" O N N 14 5CM "O3'" O N N 15 5CM "C5'" C N N 16 5CM "O5'" O N N 17 5CM P P N N 18 5CM OP1 O N N 19 5CM OP2 O N N 20 5CM OP3 O N N 21 5CM H5A1 H N N 22 5CM H5A2 H N N 23 5CM H5A3 H N N 24 5CM H6 H N N 25 5CM HN41 H N N 26 5CM HN42 H N N 27 5CM "H1'" H N N 28 5CM "H2'" H N N 29 5CM "H2''" H N N 30 5CM "H3'" H N N 31 5CM "H4'" H N N 32 5CM "HO3'" H N N 33 5CM "H5'" H N N 34 5CM "H5''" H N N 35 5CM HOP2 H N N 36 5CM HOP3 H N N 37 ALA N N N N 38 ALA CA C N S 39 ALA C C N N 40 ALA O O N N 41 ALA CB C N N 42 ALA OXT O N N 43 ALA H H N N 44 ALA H2 H N N 45 ALA HA H N N 46 ALA HB1 H N N 47 ALA HB2 H N N 48 ALA HB3 H N N 49 ALA HXT H N N 50 ARG N N N N 51 ARG CA C N S 52 ARG C C N N 53 ARG O O N N 54 ARG CB C N N 55 ARG CG C N N 56 ARG CD C N N 57 ARG NE N N N 58 ARG CZ C N N 59 ARG NH1 N N N 60 ARG NH2 N N N 61 ARG OXT O N N 62 ARG H H N N 63 ARG H2 H N N 64 ARG HA H N N 65 ARG HB2 H N N 66 ARG HB3 H N N 67 ARG HG2 H N N 68 ARG HG3 H N N 69 ARG HD2 H N N 70 ARG HD3 H N N 71 ARG HE H N N 72 ARG HH11 H N N 73 ARG HH12 H N N 74 ARG HH21 H N N 75 ARG HH22 H N N 76 ARG HXT H N N 77 ASN N N N N 78 ASN CA C N S 79 ASN C C N N 80 ASN O O N N 81 ASN CB C N N 82 ASN CG C N N 83 ASN OD1 O N N 84 ASN ND2 N N N 85 ASN OXT O N N 86 ASN H H N N 87 ASN H2 H N N 88 ASN HA H N N 89 ASN HB2 H N N 90 ASN HB3 H N N 91 ASN HD21 H N N 92 ASN HD22 H N N 93 ASN HXT H N N 94 CYS N N N N 95 CYS CA C N R 96 CYS C C N N 97 CYS O O N N 98 CYS CB C N N 99 CYS SG S N N 100 CYS OXT O N N 101 CYS H H N N 102 CYS H2 H N N 103 CYS HA H N N 104 CYS HB2 H N N 105 CYS HB3 H N N 106 CYS HG H N N 107 CYS HXT H N N 108 DA OP3 O N N 109 DA P P N N 110 DA OP1 O N N 111 DA OP2 O N N 112 DA "O5'" O N N 113 DA "C5'" C N N 114 DA "C4'" C N R 115 DA "O4'" O N N 116 DA "C3'" C N S 117 DA "O3'" O N N 118 DA "C2'" C N N 119 DA "C1'" C N R 120 DA N9 N Y N 121 DA C8 C Y N 122 DA N7 N Y N 123 DA C5 C Y N 124 DA C6 C Y N 125 DA N6 N N N 126 DA N1 N Y N 127 DA C2 C Y N 128 DA N3 N Y N 129 DA C4 C Y N 130 DA HOP3 H N N 131 DA HOP2 H N N 132 DA "H5'" H N N 133 DA "H5''" H N N 134 DA "H4'" H N N 135 DA "H3'" H N N 136 DA "HO3'" H N N 137 DA "H2'" H N N 138 DA "H2''" H N N 139 DA "H1'" H N N 140 DA H8 H N N 141 DA H61 H N N 142 DA H62 H N N 143 DA H2 H N N 144 DC OP3 O N N 145 DC P P N N 146 DC OP1 O N N 147 DC OP2 O N N 148 DC "O5'" O N N 149 DC "C5'" C N N 150 DC "C4'" C N R 151 DC "O4'" O N N 152 DC "C3'" C N S 153 DC "O3'" O N N 154 DC "C2'" C N N 155 DC "C1'" C N R 156 DC N1 N N N 157 DC C2 C N N 158 DC O2 O N N 159 DC N3 N N N 160 DC C4 C N N 161 DC N4 N N N 162 DC C5 C N N 163 DC C6 C N N 164 DC HOP3 H N N 165 DC HOP2 H N N 166 DC "H5'" H N N 167 DC "H5''" H N N 168 DC "H4'" H N N 169 DC "H3'" H N N 170 DC "HO3'" H N N 171 DC "H2'" H N N 172 DC "H2''" H N N 173 DC "H1'" H N N 174 DC H41 H N N 175 DC H42 H N N 176 DC H5 H N N 177 DC H6 H N N 178 DG OP3 O N N 179 DG P P N N 180 DG OP1 O N N 181 DG OP2 O N N 182 DG "O5'" O N N 183 DG "C5'" C N N 184 DG "C4'" C N R 185 DG "O4'" O N N 186 DG "C3'" C N S 187 DG "O3'" O N N 188 DG "C2'" C N N 189 DG "C1'" C N R 190 DG N9 N Y N 191 DG C8 C Y N 192 DG N7 N Y N 193 DG C5 C Y N 194 DG C6 C N N 195 DG O6 O N N 196 DG N1 N N N 197 DG C2 C N N 198 DG N2 N N N 199 DG N3 N N N 200 DG C4 C Y N 201 DG HOP3 H N N 202 DG HOP2 H N N 203 DG "H5'" H N N 204 DG "H5''" H N N 205 DG "H4'" H N N 206 DG "H3'" H N N 207 DG "HO3'" H N N 208 DG "H2'" H N N 209 DG "H2''" H N N 210 DG "H1'" H N N 211 DG H8 H N N 212 DG H1 H N N 213 DG H21 H N N 214 DG H22 H N N 215 DT OP3 O N N 216 DT P P N N 217 DT OP1 O N N 218 DT OP2 O N N 219 DT "O5'" O N N 220 DT "C5'" C N N 221 DT "C4'" C N R 222 DT "O4'" O N N 223 DT "C3'" C N S 224 DT "O3'" O N N 225 DT "C2'" C N N 226 DT "C1'" C N R 227 DT N1 N N N 228 DT C2 C N N 229 DT O2 O N N 230 DT N3 N N N 231 DT C4 C N N 232 DT O4 O N N 233 DT C5 C N N 234 DT C7 C N N 235 DT C6 C N N 236 DT HOP3 H N N 237 DT HOP2 H N N 238 DT "H5'" H N N 239 DT "H5''" H N N 240 DT "H4'" H N N 241 DT "H3'" H N N 242 DT "HO3'" H N N 243 DT "H2'" H N N 244 DT "H2''" H N N 245 DT "H1'" H N N 246 DT H3 H N N 247 DT H71 H N N 248 DT H72 H N N 249 DT H73 H N N 250 DT H6 H N N 251 GLN N N N N 252 GLN CA C N S 253 GLN C C N N 254 GLN O O N N 255 GLN CB C N N 256 GLN CG C N N 257 GLN CD C N N 258 GLN OE1 O N N 259 GLN NE2 N N N 260 GLN OXT O N N 261 GLN H H N N 262 GLN H2 H N N 263 GLN HA H N N 264 GLN HB2 H N N 265 GLN HB3 H N N 266 GLN HG2 H N N 267 GLN HG3 H N N 268 GLN HE21 H N N 269 GLN HE22 H N N 270 GLN HXT H N N 271 GLU N N N N 272 GLU CA C N S 273 GLU C C N N 274 GLU O O N N 275 GLU CB C N N 276 GLU CG C N N 277 GLU CD C N N 278 GLU OE1 O N N 279 GLU OE2 O N N 280 GLU OXT O N N 281 GLU H H N N 282 GLU H2 H N N 283 GLU HA H N N 284 GLU HB2 H N N 285 GLU HB3 H N N 286 GLU HG2 H N N 287 GLU HG3 H N N 288 GLU HE2 H N N 289 GLU HXT H N N 290 GLY N N N N 291 GLY CA C N N 292 GLY C C N N 293 GLY O O N N 294 GLY OXT O N N 295 GLY H H N N 296 GLY H2 H N N 297 GLY HA2 H N N 298 GLY HA3 H N N 299 GLY HXT H N N 300 HIS N N N N 301 HIS CA C N S 302 HIS C C N N 303 HIS O O N N 304 HIS CB C N N 305 HIS CG C Y N 306 HIS ND1 N Y N 307 HIS CD2 C Y N 308 HIS CE1 C Y N 309 HIS NE2 N Y N 310 HIS OXT O N N 311 HIS H H N N 312 HIS H2 H N N 313 HIS HA H N N 314 HIS HB2 H N N 315 HIS HB3 H N N 316 HIS HD1 H N N 317 HIS HD2 H N N 318 HIS HE1 H N N 319 HIS HE2 H N N 320 HIS HXT H N N 321 HOH O O N N 322 HOH H1 H N N 323 HOH H2 H N N 324 ILE N N N N 325 ILE CA C N S 326 ILE C C N N 327 ILE O O N N 328 ILE CB C N S 329 ILE CG1 C N N 330 ILE CG2 C N N 331 ILE CD1 C N N 332 ILE OXT O N N 333 ILE H H N N 334 ILE H2 H N N 335 ILE HA H N N 336 ILE HB H N N 337 ILE HG12 H N N 338 ILE HG13 H N N 339 ILE HG21 H N N 340 ILE HG22 H N N 341 ILE HG23 H N N 342 ILE HD11 H N N 343 ILE HD12 H N N 344 ILE HD13 H N N 345 ILE HXT H N N 346 LEU N N N N 347 LEU CA C N S 348 LEU C C N N 349 LEU O O N N 350 LEU CB C N N 351 LEU CG C N N 352 LEU CD1 C N N 353 LEU CD2 C N N 354 LEU OXT O N N 355 LEU H H N N 356 LEU H2 H N N 357 LEU HA H N N 358 LEU HB2 H N N 359 LEU HB3 H N N 360 LEU HG H N N 361 LEU HD11 H N N 362 LEU HD12 H N N 363 LEU HD13 H N N 364 LEU HD21 H N N 365 LEU HD22 H N N 366 LEU HD23 H N N 367 LEU HXT H N N 368 LYS N N N N 369 LYS CA C N S 370 LYS C C N N 371 LYS O O N N 372 LYS CB C N N 373 LYS CG C N N 374 LYS CD C N N 375 LYS CE C N N 376 LYS NZ N N N 377 LYS OXT O N N 378 LYS H H N N 379 LYS H2 H N N 380 LYS HA H N N 381 LYS HB2 H N N 382 LYS HB3 H N N 383 LYS HG2 H N N 384 LYS HG3 H N N 385 LYS HD2 H N N 386 LYS HD3 H N N 387 LYS HE2 H N N 388 LYS HE3 H N N 389 LYS HZ1 H N N 390 LYS HZ2 H N N 391 LYS HZ3 H N N 392 LYS HXT H N N 393 MET N N N N 394 MET CA C N S 395 MET C C N N 396 MET O O N N 397 MET CB C N N 398 MET CG C N N 399 MET SD S N N 400 MET CE C N N 401 MET OXT O N N 402 MET H H N N 403 MET H2 H N N 404 MET HA H N N 405 MET HB2 H N N 406 MET HB3 H N N 407 MET HG2 H N N 408 MET HG3 H N N 409 MET HE1 H N N 410 MET HE2 H N N 411 MET HE3 H N N 412 MET HXT H N N 413 PHE N N N N 414 PHE CA C N S 415 PHE C C N N 416 PHE O O N N 417 PHE CB C N N 418 PHE CG C Y N 419 PHE CD1 C Y N 420 PHE CD2 C Y N 421 PHE CE1 C Y N 422 PHE CE2 C Y N 423 PHE CZ C Y N 424 PHE OXT O N N 425 PHE H H N N 426 PHE H2 H N N 427 PHE HA H N N 428 PHE HB2 H N N 429 PHE HB3 H N N 430 PHE HD1 H N N 431 PHE HD2 H N N 432 PHE HE1 H N N 433 PHE HE2 H N N 434 PHE HZ H N N 435 PHE HXT H N N 436 PRO N N N N 437 PRO CA C N S 438 PRO C C N N 439 PRO O O N N 440 PRO CB C N N 441 PRO CG C N N 442 PRO CD C N N 443 PRO OXT O N N 444 PRO H H N N 445 PRO HA H N N 446 PRO HB2 H N N 447 PRO HB3 H N N 448 PRO HG2 H N N 449 PRO HG3 H N N 450 PRO HD2 H N N 451 PRO HD3 H N N 452 PRO HXT H N N 453 SER N N N N 454 SER CA C N S 455 SER C C N N 456 SER O O N N 457 SER CB C N N 458 SER OG O N N 459 SER OXT O N N 460 SER H H N N 461 SER H2 H N N 462 SER HA H N N 463 SER HB2 H N N 464 SER HB3 H N N 465 SER HG H N N 466 SER HXT H N N 467 THR N N N N 468 THR CA C N S 469 THR C C N N 470 THR O O N N 471 THR CB C N R 472 THR OG1 O N N 473 THR CG2 C N N 474 THR OXT O N N 475 THR H H N N 476 THR H2 H N N 477 THR HA H N N 478 THR HB H N N 479 THR HG1 H N N 480 THR HG21 H N N 481 THR HG22 H N N 482 THR HG23 H N N 483 THR HXT H N N 484 TYR N N N N 485 TYR CA C N S 486 TYR C C N N 487 TYR O O N N 488 TYR CB C N N 489 TYR CG C Y N 490 TYR CD1 C Y N 491 TYR CD2 C Y N 492 TYR CE1 C Y N 493 TYR CE2 C Y N 494 TYR CZ C Y N 495 TYR OH O N N 496 TYR OXT O N N 497 TYR H H N N 498 TYR H2 H N N 499 TYR HA H N N 500 TYR HB2 H N N 501 TYR HB3 H N N 502 TYR HD1 H N N 503 TYR HD2 H N N 504 TYR HE1 H N N 505 TYR HE2 H N N 506 TYR HH H N N 507 TYR HXT H N N 508 VAL N N N N 509 VAL CA C N S 510 VAL C C N N 511 VAL O O N N 512 VAL CB C N N 513 VAL CG1 C N N 514 VAL CG2 C N N 515 VAL OXT O N N 516 VAL H H N N 517 VAL H2 H N N 518 VAL HA H N N 519 VAL HB H N N 520 VAL HG11 H N N 521 VAL HG12 H N N 522 VAL HG13 H N N 523 VAL HG21 H N N 524 VAL HG22 H N N 525 VAL HG23 H N N 526 VAL HXT H N N 527 ZN ZN ZN N N 528 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5CM N1 C2 sing N N 1 5CM N1 C6 sing N N 2 5CM N1 "C1'" sing N N 3 5CM C2 N3 sing N N 4 5CM C2 O2 doub N N 5 5CM N3 C4 doub N N 6 5CM C4 C5 sing N N 7 5CM C4 N4 sing N N 8 5CM C5 C5A sing N N 9 5CM C5 C6 doub N N 10 5CM C5A H5A1 sing N N 11 5CM C5A H5A2 sing N N 12 5CM C5A H5A3 sing N N 13 5CM C6 H6 sing N N 14 5CM N4 HN41 sing N N 15 5CM N4 HN42 sing N N 16 5CM "C1'" "C2'" sing N N 17 5CM "C1'" "O4'" sing N N 18 5CM "C1'" "H1'" sing N N 19 5CM "C2'" "C3'" sing N N 20 5CM "C2'" "H2'" sing N N 21 5CM "C2'" "H2''" sing N N 22 5CM "C3'" "C4'" sing N N 23 5CM "C3'" "O3'" sing N N 24 5CM "C3'" "H3'" sing N N 25 5CM "C4'" "O4'" sing N N 26 5CM "C4'" "C5'" sing N N 27 5CM "C4'" "H4'" sing N N 28 5CM "O3'" "HO3'" sing N N 29 5CM "C5'" "O5'" sing N N 30 5CM "C5'" "H5'" sing N N 31 5CM "C5'" "H5''" sing N N 32 5CM "O5'" P sing N N 33 5CM P OP1 doub N N 34 5CM P OP2 sing N N 35 5CM P OP3 sing N N 36 5CM OP2 HOP2 sing N N 37 5CM OP3 HOP3 sing N N 38 ALA N CA sing N N 39 ALA N H sing N N 40 ALA N H2 sing N N 41 ALA CA C sing N N 42 ALA CA CB sing N N 43 ALA CA HA sing N N 44 ALA C O doub N N 45 ALA C OXT sing N N 46 ALA CB HB1 sing N N 47 ALA CB HB2 sing N N 48 ALA CB HB3 sing N N 49 ALA OXT HXT sing N N 50 ARG N CA sing N N 51 ARG N H sing N N 52 ARG N H2 sing N N 53 ARG CA C sing N N 54 ARG CA CB sing N N 55 ARG CA HA sing N N 56 ARG C O doub N N 57 ARG C OXT sing N N 58 ARG CB CG sing N N 59 ARG CB HB2 sing N N 60 ARG CB HB3 sing N N 61 ARG CG CD sing N N 62 ARG CG HG2 sing N N 63 ARG CG HG3 sing N N 64 ARG CD NE sing N N 65 ARG CD HD2 sing N N 66 ARG CD HD3 sing N N 67 ARG NE CZ sing N N 68 ARG NE HE sing N N 69 ARG CZ NH1 sing N N 70 ARG CZ NH2 doub N N 71 ARG NH1 HH11 sing N N 72 ARG NH1 HH12 sing N N 73 ARG NH2 HH21 sing N N 74 ARG NH2 HH22 sing N N 75 ARG OXT HXT sing N N 76 ASN N CA sing N N 77 ASN N H sing N N 78 ASN N H2 sing N N 79 ASN CA C sing N N 80 ASN CA CB sing N N 81 ASN CA HA sing N N 82 ASN C O doub N N 83 ASN C OXT sing N N 84 ASN CB CG sing N N 85 ASN CB HB2 sing N N 86 ASN CB HB3 sing N N 87 ASN CG OD1 doub N N 88 ASN CG ND2 sing N N 89 ASN ND2 HD21 sing N N 90 ASN ND2 HD22 sing N N 91 ASN OXT HXT sing N N 92 CYS N CA sing N N 93 CYS N H sing N N 94 CYS N H2 sing N N 95 CYS CA C sing N N 96 CYS CA CB sing N N 97 CYS CA HA sing N N 98 CYS C O doub N N 99 CYS C OXT sing N N 100 CYS CB SG sing N N 101 CYS CB HB2 sing N N 102 CYS CB HB3 sing N N 103 CYS SG HG sing N N 104 CYS OXT HXT sing N N 105 DA OP3 P sing N N 106 DA OP3 HOP3 sing N N 107 DA P OP1 doub N N 108 DA P OP2 sing N N 109 DA P "O5'" sing N N 110 DA OP2 HOP2 sing N N 111 DA "O5'" "C5'" sing N N 112 DA "C5'" "C4'" sing N N 113 DA "C5'" "H5'" sing N N 114 DA "C5'" "H5''" sing N N 115 DA "C4'" "O4'" sing N N 116 DA "C4'" "C3'" sing N N 117 DA "C4'" "H4'" sing N N 118 DA "O4'" "C1'" sing N N 119 DA "C3'" "O3'" sing N N 120 DA "C3'" "C2'" sing N N 121 DA "C3'" "H3'" sing N N 122 DA "O3'" "HO3'" sing N N 123 DA "C2'" "C1'" sing N N 124 DA "C2'" "H2'" sing N N 125 DA "C2'" "H2''" sing N N 126 DA "C1'" N9 sing N N 127 DA "C1'" "H1'" sing N N 128 DA N9 C8 sing Y N 129 DA N9 C4 sing Y N 130 DA C8 N7 doub Y N 131 DA C8 H8 sing N N 132 DA N7 C5 sing Y N 133 DA C5 C6 sing Y N 134 DA C5 C4 doub Y N 135 DA C6 N6 sing N N 136 DA C6 N1 doub Y N 137 DA N6 H61 sing N N 138 DA N6 H62 sing N N 139 DA N1 C2 sing Y N 140 DA C2 N3 doub Y N 141 DA C2 H2 sing N N 142 DA N3 C4 sing Y N 143 DC OP3 P sing N N 144 DC OP3 HOP3 sing N N 145 DC P OP1 doub N N 146 DC P OP2 sing N N 147 DC P "O5'" sing N N 148 DC OP2 HOP2 sing N N 149 DC "O5'" "C5'" sing N N 150 DC "C5'" "C4'" sing N N 151 DC "C5'" "H5'" sing N N 152 DC "C5'" "H5''" sing N N 153 DC "C4'" "O4'" sing N N 154 DC "C4'" "C3'" sing N N 155 DC "C4'" "H4'" sing N N 156 DC "O4'" "C1'" sing N N 157 DC "C3'" "O3'" sing N N 158 DC "C3'" "C2'" sing N N 159 DC "C3'" "H3'" sing N N 160 DC "O3'" "HO3'" sing N N 161 DC "C2'" "C1'" sing N N 162 DC "C2'" "H2'" sing N N 163 DC "C2'" "H2''" sing N N 164 DC "C1'" N1 sing N N 165 DC "C1'" "H1'" sing N N 166 DC N1 C2 sing N N 167 DC N1 C6 sing N N 168 DC C2 O2 doub N N 169 DC C2 N3 sing N N 170 DC N3 C4 doub N N 171 DC C4 N4 sing N N 172 DC C4 C5 sing N N 173 DC N4 H41 sing N N 174 DC N4 H42 sing N N 175 DC C5 C6 doub N N 176 DC C5 H5 sing N N 177 DC C6 H6 sing N N 178 DG OP3 P sing N N 179 DG OP3 HOP3 sing N N 180 DG P OP1 doub N N 181 DG P OP2 sing N N 182 DG P "O5'" sing N N 183 DG OP2 HOP2 sing N N 184 DG "O5'" "C5'" sing N N 185 DG "C5'" "C4'" sing N N 186 DG "C5'" "H5'" sing N N 187 DG "C5'" "H5''" sing N N 188 DG "C4'" "O4'" sing N N 189 DG "C4'" "C3'" sing N N 190 DG "C4'" "H4'" sing N N 191 DG "O4'" "C1'" sing N N 192 DG "C3'" "O3'" sing N N 193 DG "C3'" "C2'" sing N N 194 DG "C3'" "H3'" sing N N 195 DG "O3'" "HO3'" sing N N 196 DG "C2'" "C1'" sing N N 197 DG "C2'" "H2'" sing N N 198 DG "C2'" "H2''" sing N N 199 DG "C1'" N9 sing N N 200 DG "C1'" "H1'" sing N N 201 DG N9 C8 sing Y N 202 DG N9 C4 sing Y N 203 DG C8 N7 doub Y N 204 DG C8 H8 sing N N 205 DG N7 C5 sing Y N 206 DG C5 C6 sing N N 207 DG C5 C4 doub Y N 208 DG C6 O6 doub N N 209 DG C6 N1 sing N N 210 DG N1 C2 sing N N 211 DG N1 H1 sing N N 212 DG C2 N2 sing N N 213 DG C2 N3 doub N N 214 DG N2 H21 sing N N 215 DG N2 H22 sing N N 216 DG N3 C4 sing N N 217 DT OP3 P sing N N 218 DT OP3 HOP3 sing N N 219 DT P OP1 doub N N 220 DT P OP2 sing N N 221 DT P "O5'" sing N N 222 DT OP2 HOP2 sing N N 223 DT "O5'" "C5'" sing N N 224 DT "C5'" "C4'" sing N N 225 DT "C5'" "H5'" sing N N 226 DT "C5'" "H5''" sing N N 227 DT "C4'" "O4'" sing N N 228 DT "C4'" "C3'" sing N N 229 DT "C4'" "H4'" sing N N 230 DT "O4'" "C1'" sing N N 231 DT "C3'" "O3'" sing N N 232 DT "C3'" "C2'" sing N N 233 DT "C3'" "H3'" sing N N 234 DT "O3'" "HO3'" sing N N 235 DT "C2'" "C1'" sing N N 236 DT "C2'" "H2'" sing N N 237 DT "C2'" "H2''" sing N N 238 DT "C1'" N1 sing N N 239 DT "C1'" "H1'" sing N N 240 DT N1 C2 sing N N 241 DT N1 C6 sing N N 242 DT C2 O2 doub N N 243 DT C2 N3 sing N N 244 DT N3 C4 sing N N 245 DT N3 H3 sing N N 246 DT C4 O4 doub N N 247 DT C4 C5 sing N N 248 DT C5 C7 sing N N 249 DT C5 C6 doub N N 250 DT C7 H71 sing N N 251 DT C7 H72 sing N N 252 DT C7 H73 sing N N 253 DT C6 H6 sing N N 254 GLN N CA sing N N 255 GLN N H sing N N 256 GLN N H2 sing N N 257 GLN CA C sing N N 258 GLN CA CB sing N N 259 GLN CA HA sing N N 260 GLN C O doub N N 261 GLN C OXT sing N N 262 GLN CB CG sing N N 263 GLN CB HB2 sing N N 264 GLN CB HB3 sing N N 265 GLN CG CD sing N N 266 GLN CG HG2 sing N N 267 GLN CG HG3 sing N N 268 GLN CD OE1 doub N N 269 GLN CD NE2 sing N N 270 GLN NE2 HE21 sing N N 271 GLN NE2 HE22 sing N N 272 GLN OXT HXT sing N N 273 GLU N CA sing N N 274 GLU N H sing N N 275 GLU N H2 sing N N 276 GLU CA C sing N N 277 GLU CA CB sing N N 278 GLU CA HA sing N N 279 GLU C O doub N N 280 GLU C OXT sing N N 281 GLU CB CG sing N N 282 GLU CB HB2 sing N N 283 GLU CB HB3 sing N N 284 GLU CG CD sing N N 285 GLU CG HG2 sing N N 286 GLU CG HG3 sing N N 287 GLU CD OE1 doub N N 288 GLU CD OE2 sing N N 289 GLU OE2 HE2 sing N N 290 GLU OXT HXT sing N N 291 GLY N CA sing N N 292 GLY N H sing N N 293 GLY N H2 sing N N 294 GLY CA C sing N N 295 GLY CA HA2 sing N N 296 GLY CA HA3 sing N N 297 GLY C O doub N N 298 GLY C OXT sing N N 299 GLY OXT HXT sing N N 300 HIS N CA sing N N 301 HIS N H sing N N 302 HIS N H2 sing N N 303 HIS CA C sing N N 304 HIS CA CB sing N N 305 HIS CA HA sing N N 306 HIS C O doub N N 307 HIS C OXT sing N N 308 HIS CB CG sing N N 309 HIS CB HB2 sing N N 310 HIS CB HB3 sing N N 311 HIS CG ND1 sing Y N 312 HIS CG CD2 doub Y N 313 HIS ND1 CE1 doub Y N 314 HIS ND1 HD1 sing N N 315 HIS CD2 NE2 sing Y N 316 HIS CD2 HD2 sing N N 317 HIS CE1 NE2 sing Y N 318 HIS CE1 HE1 sing N N 319 HIS NE2 HE2 sing N N 320 HIS OXT HXT sing N N 321 HOH O H1 sing N N 322 HOH O H2 sing N N 323 ILE N CA sing N N 324 ILE N H sing N N 325 ILE N H2 sing N N 326 ILE CA C sing N N 327 ILE CA CB sing N N 328 ILE CA HA sing N N 329 ILE C O doub N N 330 ILE C OXT sing N N 331 ILE CB CG1 sing N N 332 ILE CB CG2 sing N N 333 ILE CB HB sing N N 334 ILE CG1 CD1 sing N N 335 ILE CG1 HG12 sing N N 336 ILE CG1 HG13 sing N N 337 ILE CG2 HG21 sing N N 338 ILE CG2 HG22 sing N N 339 ILE CG2 HG23 sing N N 340 ILE CD1 HD11 sing N N 341 ILE CD1 HD12 sing N N 342 ILE CD1 HD13 sing N N 343 ILE OXT HXT sing N N 344 LEU N CA sing N N 345 LEU N H sing N N 346 LEU N H2 sing N N 347 LEU CA C sing N N 348 LEU CA CB sing N N 349 LEU CA HA sing N N 350 LEU C O doub N N 351 LEU C OXT sing N N 352 LEU CB CG sing N N 353 LEU CB HB2 sing N N 354 LEU CB HB3 sing N N 355 LEU CG CD1 sing N N 356 LEU CG CD2 sing N N 357 LEU CG HG sing N N 358 LEU CD1 HD11 sing N N 359 LEU CD1 HD12 sing N N 360 LEU CD1 HD13 sing N N 361 LEU CD2 HD21 sing N N 362 LEU CD2 HD22 sing N N 363 LEU CD2 HD23 sing N N 364 LEU OXT HXT sing N N 365 LYS N CA sing N N 366 LYS N H sing N N 367 LYS N H2 sing N N 368 LYS CA C sing N N 369 LYS CA CB sing N N 370 LYS CA HA sing N N 371 LYS C O doub N N 372 LYS C OXT sing N N 373 LYS CB CG sing N N 374 LYS CB HB2 sing N N 375 LYS CB HB3 sing N N 376 LYS CG CD sing N N 377 LYS CG HG2 sing N N 378 LYS CG HG3 sing N N 379 LYS CD CE sing N N 380 LYS CD HD2 sing N N 381 LYS CD HD3 sing N N 382 LYS CE NZ sing N N 383 LYS CE HE2 sing N N 384 LYS CE HE3 sing N N 385 LYS NZ HZ1 sing N N 386 LYS NZ HZ2 sing N N 387 LYS NZ HZ3 sing N N 388 LYS OXT HXT sing N N 389 MET N CA sing N N 390 MET N H sing N N 391 MET N H2 sing N N 392 MET CA C sing N N 393 MET CA CB sing N N 394 MET CA HA sing N N 395 MET C O doub N N 396 MET C OXT sing N N 397 MET CB CG sing N N 398 MET CB HB2 sing N N 399 MET CB HB3 sing N N 400 MET CG SD sing N N 401 MET CG HG2 sing N N 402 MET CG HG3 sing N N 403 MET SD CE sing N N 404 MET CE HE1 sing N N 405 MET CE HE2 sing N N 406 MET CE HE3 sing N N 407 MET OXT HXT sing N N 408 PHE N CA sing N N 409 PHE N H sing N N 410 PHE N H2 sing N N 411 PHE CA C sing N N 412 PHE CA CB sing N N 413 PHE CA HA sing N N 414 PHE C O doub N N 415 PHE C OXT sing N N 416 PHE CB CG sing N N 417 PHE CB HB2 sing N N 418 PHE CB HB3 sing N N 419 PHE CG CD1 doub Y N 420 PHE CG CD2 sing Y N 421 PHE CD1 CE1 sing Y N 422 PHE CD1 HD1 sing N N 423 PHE CD2 CE2 doub Y N 424 PHE CD2 HD2 sing N N 425 PHE CE1 CZ doub Y N 426 PHE CE1 HE1 sing N N 427 PHE CE2 CZ sing Y N 428 PHE CE2 HE2 sing N N 429 PHE CZ HZ sing N N 430 PHE OXT HXT sing N N 431 PRO N CA sing N N 432 PRO N CD sing N N 433 PRO N H sing N N 434 PRO CA C sing N N 435 PRO CA CB sing N N 436 PRO CA HA sing N N 437 PRO C O doub N N 438 PRO C OXT sing N N 439 PRO CB CG sing N N 440 PRO CB HB2 sing N N 441 PRO CB HB3 sing N N 442 PRO CG CD sing N N 443 PRO CG HG2 sing N N 444 PRO CG HG3 sing N N 445 PRO CD HD2 sing N N 446 PRO CD HD3 sing N N 447 PRO OXT HXT sing N N 448 SER N CA sing N N 449 SER N H sing N N 450 SER N H2 sing N N 451 SER CA C sing N N 452 SER CA CB sing N N 453 SER CA HA sing N N 454 SER C O doub N N 455 SER C OXT sing N N 456 SER CB OG sing N N 457 SER CB HB2 sing N N 458 SER CB HB3 sing N N 459 SER OG HG sing N N 460 SER OXT HXT sing N N 461 THR N CA sing N N 462 THR N H sing N N 463 THR N H2 sing N N 464 THR CA C sing N N 465 THR CA CB sing N N 466 THR CA HA sing N N 467 THR C O doub N N 468 THR C OXT sing N N 469 THR CB OG1 sing N N 470 THR CB CG2 sing N N 471 THR CB HB sing N N 472 THR OG1 HG1 sing N N 473 THR CG2 HG21 sing N N 474 THR CG2 HG22 sing N N 475 THR CG2 HG23 sing N N 476 THR OXT HXT sing N N 477 TYR N CA sing N N 478 TYR N H sing N N 479 TYR N H2 sing N N 480 TYR CA C sing N N 481 TYR CA CB sing N N 482 TYR CA HA sing N N 483 TYR C O doub N N 484 TYR C OXT sing N N 485 TYR CB CG sing N N 486 TYR CB HB2 sing N N 487 TYR CB HB3 sing N N 488 TYR CG CD1 doub Y N 489 TYR CG CD2 sing Y N 490 TYR CD1 CE1 sing Y N 491 TYR CD1 HD1 sing N N 492 TYR CD2 CE2 doub Y N 493 TYR CD2 HD2 sing N N 494 TYR CE1 CZ doub Y N 495 TYR CE1 HE1 sing N N 496 TYR CE2 CZ sing Y N 497 TYR CE2 HE2 sing N N 498 TYR CZ OH sing N N 499 TYR OH HH sing N N 500 TYR OXT HXT sing N N 501 VAL N CA sing N N 502 VAL N H sing N N 503 VAL N H2 sing N N 504 VAL CA C sing N N 505 VAL CA CB sing N N 506 VAL CA HA sing N N 507 VAL C O doub N N 508 VAL C OXT sing N N 509 VAL CB CG1 sing N N 510 VAL CB CG2 sing N N 511 VAL CB HB sing N N 512 VAL CG1 HG11 sing N N 513 VAL CG1 HG12 sing N N 514 VAL CG1 HG13 sing N N 515 VAL CG2 HG21 sing N N 516 VAL CG2 HG22 sing N N 517 VAL CG2 HG23 sing N N 518 VAL OXT HXT sing N N 519 # _ndb_struct_conf_na.entry_id 4HP1 _ndb_struct_conf_na.feature 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 1 1_555 B DC 12 1_555 0.085 0.096 -0.140 -2.922 -1.993 -1.509 1 A_DG1:DC12_B A 1 ? B 12 ? 19 1 1 A DC 2 1_555 B DG 11 1_555 -0.078 -0.145 0.480 -4.703 -4.976 -2.923 2 A_DC2:DG11_B A 2 ? B 11 ? 19 1 1 A DC 3 1_555 B DG 10 1_555 0.033 -0.144 0.385 -3.631 -14.389 -0.019 3 A_DC3:DG10_B A 3 ? B 10 ? 19 1 1 A DA 4 1_555 B DT 9 1_555 0.226 -0.217 -0.072 -0.845 -0.108 1.432 4 A_DA4:DT9_B A 4 ? B 9 ? 20 1 1 A DC 5 1_555 B DG 8 1_555 -0.202 -0.143 0.246 1.465 -7.826 -5.281 5 A_DC5:DG8_B A 5 ? B 8 ? 19 1 1 A 5CM 6 1_555 B DG 7 1_555 0.537 -0.350 0.101 0.147 -2.279 -1.187 6 A_5CM6:DG7_B A 6 ? B 7 ? 19 1 1 A DG 7 1_555 B 5CM 6 1_555 -0.168 -0.219 0.274 5.792 -11.009 -3.946 7 A_DG7:5CM6_B A 7 ? B 6 ? 19 1 1 A DG 8 1_555 B DC 5 1_555 0.158 0.081 0.290 3.390 -11.023 3.506 8 A_DG8:DC5_B A 8 ? B 5 ? 19 1 1 A DT 9 1_555 B DA 4 1_555 0.210 -0.129 0.147 0.659 -13.893 -3.065 9 A_DT9:DA4_B A 9 ? B 4 ? 20 1 1 A DG 10 1_555 B DC 3 1_555 -0.627 -0.412 0.124 -0.950 -7.185 -2.010 10 A_DG10:DC3_B A 10 ? B 3 ? 19 1 1 A DG 11 1_555 B DC 2 1_555 0.183 -0.002 0.455 10.141 -5.949 -4.082 11 A_DG11:DC2_B A 11 ? B 2 ? 19 1 1 A DC 12 1_555 B DG 1 1_555 0.759 0.033 0.046 2.967 -1.418 3.684 12 A_DC12:DG1_B A 12 ? B 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 1 1_555 B DC 12 1_555 A DC 2 1_555 B DG 11 1_555 -0.698 -0.316 3.347 -5.677 -1.753 33.366 -0.249 0.244 3.427 -3.023 9.790 33.876 1 AA_DG1DC2:DG11DC12_BB A 1 ? B 12 ? A 2 ? B 11 ? 1 A DC 2 1_555 B DG 11 1_555 A DC 3 1_555 B DG 10 1_555 -0.239 0.114 3.242 1.863 3.160 34.473 -0.290 0.685 3.222 5.313 -3.133 34.661 2 AA_DC2DC3:DG10DG11_BB A 2 ? B 11 ? A 3 ? B 10 ? 1 A DC 3 1_555 B DG 10 1_555 A DA 4 1_555 B DT 9 1_555 1.519 1.120 3.322 5.304 2.282 37.239 1.422 -1.625 3.558 3.547 -8.245 37.669 3 AA_DC3DA4:DT9DG10_BB A 3 ? B 10 ? A 4 ? B 9 ? 1 A DA 4 1_555 B DT 9 1_555 A DC 5 1_555 B DG 8 1_555 -1.790 0.501 3.386 -5.270 -2.233 34.558 1.192 2.125 3.573 -3.727 8.796 35.015 4 AA_DA4DC5:DG8DT9_BB A 4 ? B 9 ? A 5 ? B 8 ? 1 A DC 5 1_555 B DG 8 1_555 A 5CM 6 1_555 B DG 7 1_555 1.191 0.749 3.450 4.556 1.768 39.109 0.885 -1.184 3.590 2.628 -6.774 39.402 5 AA_DC55CM6:DG7DG8_BB A 5 ? B 8 ? A 6 ? B 7 ? 1 A 5CM 6 1_555 B DG 7 1_555 A DG 7 1_555 B 5CM 6 1_555 -0.919 1.483 3.278 -3.213 -0.230 33.773 2.579 1.053 3.339 -0.394 5.514 33.922 6 AA_5CM6DG7:5CM6DG7_BB A 6 ? B 7 ? A 7 ? B 6 ? 1 A DG 7 1_555 B 5CM 6 1_555 A DG 8 1_555 B DC 5 1_555 0.234 -0.249 3.431 -0.935 4.638 34.366 -1.160 -0.543 3.362 7.804 1.573 34.681 7 AA_DG7DG8:DC55CM6_BB A 7 ? B 6 ? A 8 ? B 5 ? 1 A DG 8 1_555 B DC 5 1_555 A DT 9 1_555 B DA 4 1_555 -0.171 -0.442 3.372 2.129 5.552 31.340 -1.833 0.706 3.230 10.164 -3.898 31.885 8 AA_DG8DT9:DA4DC5_BB A 8 ? B 5 ? A 9 ? B 4 ? 1 A DT 9 1_555 B DA 4 1_555 A DG 10 1_555 B DC 3 1_555 -0.189 2.126 3.309 0.984 -6.949 44.037 3.419 0.336 2.953 -9.198 -1.302 44.565 9 AA_DT9DG10:DC3DA4_BB A 9 ? B 4 ? A 10 ? B 3 ? 1 A DG 10 1_555 B DC 3 1_555 A DG 11 1_555 B DC 2 1_555 -0.198 0.442 3.173 -3.691 1.444 33.939 0.530 -0.233 3.191 2.462 6.297 34.163 10 AA_DG10DG11:DC2DC3_BB A 10 ? B 3 ? A 11 ? B 2 ? 1 A DG 11 1_555 B DC 2 1_555 A DC 12 1_555 B DG 1 1_555 1.072 -0.308 3.470 3.552 -2.391 39.152 -0.153 -1.137 3.562 -3.555 -5.281 39.377 11 AA_DG11DC12:DG1DC2_BB A 11 ? B 2 ? A 12 ? B 1 ? # _pdbx_initial_refinement_model.accession_code ? _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name Other _pdbx_initial_refinement_model.details ;unpublished model of complex between same protein and DNA fragment. That structure was solved by a combination of zinc-SAD (SHELXD/E) and molecular replacement in ""density"" mode (MOLREP), using ideal DNA (COOT) and human MLL2 (currently unpublished) as search models. ; # _atom_sites.entry_id 4HP1 _atom_sites.fract_transf_matrix[1][1] 0.014079 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000253 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.025306 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.017354 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O P S ZN # loop_