HEADER DNA BINDING PROTEIN/DNA 23-OCT-12 4HP1 TITLE CRYSTAL STRUCTURE OF TET3 IN COMPLEX WITH A NON-CPG DSDNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(*GP*CP*CP*AP*CP*(5CM)P*GP*GP*TP*GP*GP*C)-3'); COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: LOC100036628 PROTEIN; COMPND 7 CHAIN: C; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 ORGANISM_SCIENTIFIC: XENOPUS (SILURANA) TROPICALIS; SOURCE 5 ORGANISM_COMMON: WESTERN CLAWED FROG; SOURCE 6 ORGANISM_TAXID: 8364; SOURCE 7 GENE: TET3, LOC100036628; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: BL21-V2R-PRARE2; SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PET28-MHL KEYWDS CXXC, DNA METHYLATION, STRUCTURAL GENOMICS, STRUCTURAL GENOMICS KEYWDS 2 CONSORTIUM, SGC, DNA BINDING PROTEIN-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR X.CHAO,W.TEMPEL,C.BIAN,C.BOUNTRA,C.H.ARROWSMITH,A.M.EDWARDS,J.MIN, AUTHOR 2 STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 4 03-APR-24 4HP1 1 REMARK REVDAT 3 28-FEB-24 4HP1 1 REMARK SEQADV LINK REVDAT 2 19-DEC-12 4HP1 1 JRNL REVDAT 1 05-DEC-12 4HP1 0 JRNL AUTH Y.XU,C.XU,A.KATO,W.TEMPEL,J.G.ABREU,C.BIAN,Y.HU,D.HU,B.ZHAO, JRNL AUTH 2 T.CEROVINA,J.DIAO,F.WU,H.H.HE,Q.CUI,E.CLARK,C.MA,A.BARBARA, JRNL AUTH 3 G.J.VEENSTRA,G.XU,U.B.KAISER,X.S.LIU,S.P.SUGRUE,X.HE,J.MIN, JRNL AUTH 4 Y.KATO,Y.G.SHI JRNL TITL TET3 CXXC DOMAIN AND DIOXYGENASE ACTIVITY COOPERATIVELY JRNL TITL 2 REGULATE KEY GENES FOR XENOPUS EYE AND NEURAL DEVELOPMENT. JRNL REF CELL(CAMBRIDGE,MASS.) V. 151 1200 2012 JRNL REFN ISSN 0092-8674 JRNL PMID 23217707 JRNL DOI 10.1016/J.CELL.2012.11.014 REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0027 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 7736 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.250 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.537 REMARK 3 FREE R VALUE TEST SET COUNT : 351 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.25 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.31 REMARK 3 REFLECTION IN BIN (WORKING SET) : 539 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.4670 REMARK 3 BIN FREE R VALUE SET COUNT : 26 REMARK 3 BIN FREE R VALUE : 0.4660 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 383 REMARK 3 NUCLEIC ACID ATOMS : 487 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 10 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 70.55 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.09200 REMARK 3 B22 (A**2) : -3.40600 REMARK 3 B33 (A**2) : 5.44800 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.37500 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.241 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.198 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.189 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 14.195 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.954 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 944 ; 0.012 ; 0.015 REMARK 3 BOND LENGTHS OTHERS (A): 657 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1367 ; 1.377 ; 1.673 REMARK 3 BOND ANGLES OTHERS (DEGREES): 1518 ; 1.155 ; 3.011 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 50 ; 5.478 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 15 ;33.295 ;22.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 80 ;15.397 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 5 ;17.228 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 128 ; 0.061 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 730 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 217 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 12 REMARK 3 ORIGIN FOR THE GROUP (A): 21.2959 0.3332 9.2652 REMARK 3 T TENSOR REMARK 3 T11: 0.4839 T22: 0.5631 REMARK 3 T33: 0.3110 T12: -0.2503 REMARK 3 T13: -0.0562 T23: -0.0483 REMARK 3 L TENSOR REMARK 3 L11: 9.2194 L22: 10.0492 REMARK 3 L33: 5.9178 L12: 4.6015 REMARK 3 L13: -0.7036 L23: -1.7156 REMARK 3 S TENSOR REMARK 3 S11: -0.4552 S12: 1.3601 S13: 0.0956 REMARK 3 S21: -0.5914 S22: 0.2957 S23: -0.4826 REMARK 3 S31: -0.1728 S32: 0.4087 S33: 0.1595 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 12 REMARK 3 ORIGIN FOR THE GROUP (A): 22.0503 -1.0194 9.7846 REMARK 3 T TENSOR REMARK 3 T11: 0.4996 T22: 0.5766 REMARK 3 T33: 0.3125 T12: -0.2011 REMARK 3 T13: 0.0040 T23: -0.0722 REMARK 3 L TENSOR REMARK 3 L11: 15.9835 L22: 8.4588 REMARK 3 L33: 4.3401 L12: 7.2740 REMARK 3 L13: 0.6816 L23: -0.0316 REMARK 3 S TENSOR REMARK 3 S11: -0.0407 S12: -0.0128 S13: 0.1235 REMARK 3 S21: -0.0092 S22: -0.0616 S23: -0.4126 REMARK 3 S31: -0.3767 S32: 0.4751 S33: 0.1023 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 59 C 109 REMARK 3 ORIGIN FOR THE GROUP (A): 17.0095 -2.4406 21.3559 REMARK 3 T TENSOR REMARK 3 T11: 0.5320 T22: 0.1555 REMARK 3 T33: 0.2993 T12: -0.1071 REMARK 3 T13: -0.0218 T23: -0.0365 REMARK 3 L TENSOR REMARK 3 L11: 4.5889 L22: 7.6649 REMARK 3 L33: 9.7911 L12: -0.4331 REMARK 3 L13: 1.7374 L23: -0.3340 REMARK 3 S TENSOR REMARK 3 S11: -0.2312 S12: 0.5210 S13: -0.1007 REMARK 3 S21: -0.0583 S22: 0.1989 S23: -0.2583 REMARK 3 S31: 0.0994 S32: 0.2059 S33: 0.0324 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES WITH TLS ADDED. COOT AND THE MOLPROBITY REMARK 3 SERVER WERE ALSO USED DURING REFINEMENT. REMARK 4 REMARK 4 4HP1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-NOV-12. REMARK 100 THE DEPOSITION ID IS D_1000075740. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-JAN-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA CCP4_3.3.20 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 7738 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 35.510 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 4.120 REMARK 200 R MERGE (I) : 0.04600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.6771 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.37 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.17 REMARK 200 R MERGE FOR SHELL (I) : 0.49000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: UNPUBLISHED MODEL OF COMPLEX BETWEEN SAME PROTEIN REMARK 200 AND DNA FRAGMENT. THAT STRUCTURE WAS SOLVED BY A COMBINATION OF REMARK 200 ZINC-SAD (SHELXD/E) AND MOLECULAR REPLACEMENT IN "DENSITY" MODE REMARK 200 (MOLREP), USING IDEAL DNA (COOT) AND HUMAN MLL2 (CURRENTLY REMARK 200 UNPUBLISHED) AS SEARCH MODELS. REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG-1500, 0.2M SODIUM CHLORIDE, REMARK 280 0.1M HEPES, 5% MPD, PH 7.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 35.51350 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 19.75850 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 35.51350 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 19.75850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHORS STATE THAT THE BIOLOGICAL ASSEMBLY IS UNKNOWN. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4080 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7020 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET C 40 REMARK 465 HIS C 41 REMARK 465 HIS C 42 REMARK 465 HIS C 43 REMARK 465 HIS C 44 REMARK 465 HIS C 45 REMARK 465 HIS C 46 REMARK 465 SER C 47 REMARK 465 SER C 48 REMARK 465 GLY C 49 REMARK 465 ARG C 50 REMARK 465 GLU C 51 REMARK 465 ASN C 52 REMARK 465 LEU C 53 REMARK 465 TYR C 54 REMARK 465 PHE C 55 REMARK 465 GLN C 56 REMARK 465 GLY C 57 REMARK 465 SER C 58 REMARK 465 LYS C 110 REMARK 465 GLY C 111 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 DG A 1 O5' REMARK 470 LYS C 60 CG CD CE NZ REMARK 470 LYS C 63 NZ REMARK 470 LYS C 74 CD CE NZ REMARK 470 ARG C 86 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 94 NZ REMARK 470 LYS C 104 CD CE NZ REMARK 470 VAL C 106 CG1 CG2 REMARK 470 VAL C 107 CG1 CG2 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 65 SG REMARK 620 2 CYS C 68 SG 109.9 REMARK 620 3 CYS C 71 SG 116.1 98.9 REMARK 620 4 CYS C 98 SG 108.8 122.6 100.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 202 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 77 SG REMARK 620 2 CYS C 80 SG 111.5 REMARK 620 3 CYS C 83 SG 114.4 104.2 REMARK 620 4 CYS C 93 SG 107.0 117.2 102.4 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C 202 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4HP3 RELATED DB: PDB DBREF 4HP1 C 58 111 UNP A0JP82 A0JP82_XENTR 58 111 DBREF 4HP1 A 1 12 PDB 4HP1 4HP1 1 12 DBREF 4HP1 B 1 12 PDB 4HP1 4HP1 1 12 SEQADV 4HP1 MET C 40 UNP A0JP82 EXPRESSION TAG SEQADV 4HP1 HIS C 41 UNP A0JP82 EXPRESSION TAG SEQADV 4HP1 HIS C 42 UNP A0JP82 EXPRESSION TAG SEQADV 4HP1 HIS C 43 UNP A0JP82 EXPRESSION TAG SEQADV 4HP1 HIS C 44 UNP A0JP82 EXPRESSION TAG SEQADV 4HP1 HIS C 45 UNP A0JP82 EXPRESSION TAG SEQADV 4HP1 HIS C 46 UNP A0JP82 EXPRESSION TAG SEQADV 4HP1 SER C 47 UNP A0JP82 EXPRESSION TAG SEQADV 4HP1 SER C 48 UNP A0JP82 EXPRESSION TAG SEQADV 4HP1 GLY C 49 UNP A0JP82 EXPRESSION TAG SEQADV 4HP1 ARG C 50 UNP A0JP82 EXPRESSION TAG SEQADV 4HP1 GLU C 51 UNP A0JP82 EXPRESSION TAG SEQADV 4HP1 ASN C 52 UNP A0JP82 EXPRESSION TAG SEQADV 4HP1 LEU C 53 UNP A0JP82 EXPRESSION TAG SEQADV 4HP1 TYR C 54 UNP A0JP82 EXPRESSION TAG SEQADV 4HP1 PHE C 55 UNP A0JP82 EXPRESSION TAG SEQADV 4HP1 GLN C 56 UNP A0JP82 EXPRESSION TAG SEQADV 4HP1 GLY C 57 UNP A0JP82 EXPRESSION TAG SEQRES 1 A 12 DG DC DC DA DC 5CM DG DG DT DG DG DC SEQRES 1 B 12 DG DC DC DA DC 5CM DG DG DT DG DG DC SEQRES 1 C 72 MET HIS HIS HIS HIS HIS HIS SER SER GLY ARG GLU ASN SEQRES 2 C 72 LEU TYR PHE GLN GLY SER ASN LYS LYS ARG LYS ARG CYS SEQRES 3 C 72 GLY VAL CYS VAL PRO CYS LEU ARG LYS GLU PRO CYS GLY SEQRES 4 C 72 ALA CYS TYR ASN CYS VAL ASN ARG SER THR SER HIS GLN SEQRES 5 C 72 ILE CYS LYS MET ARG LYS CYS GLU GLN LEU LYS LYS LYS SEQRES 6 C 72 ARG VAL VAL PRO MET LYS GLY MODRES 4HP1 5CM A 6 DC MODRES 4HP1 5CM B 6 DC HET 5CM A 6 20 HET 5CM B 6 20 HET ZN C 201 1 HET ZN C 202 1 HETNAM 5CM 5-METHYL-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE HETNAM ZN ZINC ION FORMUL 1 5CM 2(C10 H16 N3 O7 P) FORMUL 4 ZN 2(ZN 2+) FORMUL 6 HOH *10(H2 O) HELIX 1 1 CYS C 68 ARG C 73 1 6 HELIX 2 2 CYS C 80 ASN C 85 1 6 LINK O3' DC A 5 P 5CM A 6 1555 1555 1.61 LINK O3' 5CM A 6 P DG A 7 1555 1555 1.61 LINK O3' DC B 5 P 5CM B 6 1555 1555 1.59 LINK O3' 5CM B 6 P DG B 7 1555 1555 1.58 LINK SG CYS C 65 ZN ZN C 201 1555 1555 2.33 LINK SG CYS C 68 ZN ZN C 201 1555 1555 2.34 LINK SG CYS C 71 ZN ZN C 201 1555 1555 2.30 LINK SG CYS C 77 ZN ZN C 202 1555 1555 2.33 LINK SG CYS C 80 ZN ZN C 202 1555 1555 2.32 LINK SG CYS C 83 ZN ZN C 202 1555 1555 2.36 LINK SG CYS C 93 ZN ZN C 202 1555 1555 2.36 LINK SG CYS C 98 ZN ZN C 201 1555 1555 2.29 SITE 1 AC1 4 CYS C 65 CYS C 68 CYS C 71 CYS C 98 SITE 1 AC2 4 CYS C 77 CYS C 80 CYS C 83 CYS C 93 CRYST1 71.027 39.517 57.634 90.00 91.03 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014079 0.000000 0.000253 0.00000 SCALE2 0.000000 0.025306 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017354 0.00000