HEADER CELL ADHESION 25-OCT-12 4HQK TITLE CRYSTAL STRUCTURE OF PLASMODIUM FALCIPARUM TRAP, P4212 FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: THROMBOSPONDIN-RELATED ANONYMOUS PROTEIN, TRAP; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: CLOSED VWA DOMAIN (UNP RESIDUES 41-240); COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM FALCIPARUM; SOURCE 3 ORGANISM_TAXID: 36329; SOURCE 4 STRAIN: 3D7; SOURCE 5 GENE: TRAP, PF13_0201; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: HEK293T KEYWDS MALARIA, PARASITE MOTILITY, VWA DOMAIN, RECEPTOR ON SPOROZOITE, KEYWDS 2 VACCINE TARGET, SPOROZOITE SURFACE, CELL ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR G.SONG,A.C.KOKSAL,C.LU,T.A.SPRINGER REVDAT 3 20-SEP-23 4HQK 1 REMARK SEQADV REVDAT 2 09-JAN-13 4HQK 1 JRNL REVDAT 1 26-DEC-12 4HQK 0 JRNL AUTH G.SONG,A.C.KOKSAL,C.LU,T.A.SPRINGER JRNL TITL SHAPE CHANGE IN THE RECEPTOR FOR GLIDING MOTILITY IN JRNL TITL 2 PLASMODIUM SPOROZOITES. JRNL REF PROC.NATL.ACAD.SCI.USA V. 109 21420 2012 JRNL REFN ISSN 0027-8424 JRNL PMID 23236185 JRNL DOI 10.1073/PNAS.1218581109 REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.1_1168) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.03 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 22394 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2240 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.0362 - 5.6617 1.00 1394 154 0.2075 0.2200 REMARK 3 2 5.6617 - 4.4956 1.00 1297 146 0.1506 0.1997 REMARK 3 3 4.4956 - 3.9279 1.00 1284 141 0.1335 0.1740 REMARK 3 4 3.9279 - 3.5690 1.00 1272 142 0.1483 0.2071 REMARK 3 5 3.5690 - 3.3133 1.00 1266 142 0.1692 0.2307 REMARK 3 6 3.3133 - 3.1180 1.00 1255 138 0.1870 0.2830 REMARK 3 7 3.1180 - 2.9619 1.00 1259 141 0.1972 0.2488 REMARK 3 8 2.9619 - 2.8330 1.00 1241 138 0.2021 0.2439 REMARK 3 9 2.8330 - 2.7240 1.00 1254 140 0.1931 0.2600 REMARK 3 10 2.7240 - 2.6300 1.00 1229 136 0.2236 0.3021 REMARK 3 11 2.6300 - 2.5478 1.00 1256 140 0.2233 0.3070 REMARK 3 12 2.5478 - 2.4749 1.00 1261 126 0.2434 0.3407 REMARK 3 13 2.4749 - 2.4098 1.00 1202 151 0.2574 0.3168 REMARK 3 14 2.4098 - 2.3510 1.00 1226 144 0.2540 0.3142 REMARK 3 15 2.3510 - 2.2976 1.00 1257 127 0.2703 0.3496 REMARK 3 16 2.2976 - 2.2490 0.97 1201 134 0.3064 0.3594 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.300 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.420 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 3173 REMARK 3 ANGLE : 0.696 4285 REMARK 3 CHIRALITY : 0.050 497 REMARK 3 PLANARITY : 0.003 555 REMARK 3 DIHEDRAL : 10.918 1183 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 15 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 41 THROUGH 54 ) REMARK 3 ORIGIN FOR THE GROUP (A): 87.6213 47.5565 8.7886 REMARK 3 T TENSOR REMARK 3 T11: 0.7707 T22: 0.4221 REMARK 3 T33: 0.3061 T12: 0.0662 REMARK 3 T13: 0.0627 T23: 0.0364 REMARK 3 L TENSOR REMARK 3 L11: 3.8117 L22: 5.5560 REMARK 3 L33: 9.1941 L12: 0.7734 REMARK 3 L13: -3.6337 L23: -4.8930 REMARK 3 S TENSOR REMARK 3 S11: 0.1563 S12: 1.0390 S13: 0.3172 REMARK 3 S21: -1.6133 S22: 0.2516 S23: -0.1991 REMARK 3 S31: -0.1062 S32: -1.7464 S33: -0.6032 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 55 THROUGH 132 ) REMARK 3 ORIGIN FOR THE GROUP (A): 84.2939 39.2528 16.1719 REMARK 3 T TENSOR REMARK 3 T11: 0.2873 T22: 0.2679 REMARK 3 T33: 0.3136 T12: 0.0512 REMARK 3 T13: -0.0009 T23: -0.0036 REMARK 3 L TENSOR REMARK 3 L11: 2.6430 L22: 4.5725 REMARK 3 L33: 4.2383 L12: 0.0577 REMARK 3 L13: 0.1183 L23: -0.5250 REMARK 3 S TENSOR REMARK 3 S11: 0.2194 S12: 0.1875 S13: -0.1201 REMARK 3 S21: -0.4407 S22: -0.0493 S23: 0.0187 REMARK 3 S31: 0.2164 S32: -0.1680 S33: -0.1699 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 133 THROUGH 153 ) REMARK 3 ORIGIN FOR THE GROUP (A): 100.1769 47.1981 14.9680 REMARK 3 T TENSOR REMARK 3 T11: 0.4781 T22: 0.4345 REMARK 3 T33: 0.5493 T12: -0.0312 REMARK 3 T13: 0.1522 T23: -0.0116 REMARK 3 L TENSOR REMARK 3 L11: 7.2951 L22: 5.5717 REMARK 3 L33: 9.4196 L12: -1.4726 REMARK 3 L13: 1.5991 L23: 0.2947 REMARK 3 S TENSOR REMARK 3 S11: 0.2230 S12: 0.3080 S13: 0.0746 REMARK 3 S21: -0.5974 S22: -0.0159 S23: -0.7614 REMARK 3 S31: -0.0891 S32: 2.0350 S33: -0.3149 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 154 THROUGH 190 ) REMARK 3 ORIGIN FOR THE GROUP (A): 91.5597 53.9361 20.9958 REMARK 3 T TENSOR REMARK 3 T11: 0.5989 T22: 0.2363 REMARK 3 T33: 0.5439 T12: -0.0484 REMARK 3 T13: 0.1012 T23: -0.0438 REMARK 3 L TENSOR REMARK 3 L11: 4.4336 L22: 1.6921 REMARK 3 L33: 8.2099 L12: -1.9376 REMARK 3 L13: -0.6035 L23: 1.3708 REMARK 3 S TENSOR REMARK 3 S11: 0.1957 S12: -0.2990 S13: 0.7785 REMARK 3 S21: 0.1225 S22: -0.1073 S23: -0.4481 REMARK 3 S31: -0.8473 S32: 0.6019 S33: -0.1540 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 191 THROUGH 219 ) REMARK 3 ORIGIN FOR THE GROUP (A): 81.7860 60.5455 21.8584 REMARK 3 T TENSOR REMARK 3 T11: 0.7601 T22: 0.3149 REMARK 3 T33: 0.4467 T12: 0.1052 REMARK 3 T13: 0.0847 T23: 0.0148 REMARK 3 L TENSOR REMARK 3 L11: 6.7425 L22: 5.0170 REMARK 3 L33: 4.6296 L12: 3.7486 REMARK 3 L13: 0.2248 L23: 1.2406 REMARK 3 S TENSOR REMARK 3 S11: 0.3519 S12: -0.0880 S13: 0.5644 REMARK 3 S21: -0.4170 S22: -0.2448 S23: 0.1532 REMARK 3 S31: -1.3006 S32: -0.3814 S33: -0.0904 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 220 THROUGH 240 ) REMARK 3 ORIGIN FOR THE GROUP (A): 78.1755 53.2661 11.1219 REMARK 3 T TENSOR REMARK 3 T11: 0.7302 T22: 0.5243 REMARK 3 T33: 0.4999 T12: 0.2554 REMARK 3 T13: 0.0978 T23: 0.0849 REMARK 3 L TENSOR REMARK 3 L11: 9.7948 L22: 2.5835 REMARK 3 L33: 7.3816 L12: 3.9443 REMARK 3 L13: -2.1963 L23: -2.0349 REMARK 3 S TENSOR REMARK 3 S11: 0.4402 S12: 1.2747 S13: 0.7701 REMARK 3 S21: -0.7800 S22: 0.2638 S23: 0.1699 REMARK 3 S31: -0.6381 S32: -0.8784 S33: -0.4795 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 41 THROUGH 54 ) REMARK 3 ORIGIN FOR THE GROUP (A): 83.4988 11.4140 11.1081 REMARK 3 T TENSOR REMARK 3 T11: 0.5199 T22: 0.3370 REMARK 3 T33: 0.4463 T12: -0.0960 REMARK 3 T13: -0.0194 T23: -0.0523 REMARK 3 L TENSOR REMARK 3 L11: 8.3472 L22: 8.1956 REMARK 3 L33: 6.9597 L12: -2.3780 REMARK 3 L13: 1.3180 L23: 3.8140 REMARK 3 S TENSOR REMARK 3 S11: 0.1386 S12: 1.2669 S13: -0.8270 REMARK 3 S21: -1.0658 S22: -0.0684 S23: 0.2599 REMARK 3 S31: -0.0153 S32: 0.4415 S33: 0.0434 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 55 THROUGH 67 ) REMARK 3 ORIGIN FOR THE GROUP (A): 97.5867 21.0820 26.0795 REMARK 3 T TENSOR REMARK 3 T11: 0.3516 T22: 0.4920 REMARK 3 T33: 0.3856 T12: -0.0572 REMARK 3 T13: 0.0030 T23: -0.0408 REMARK 3 L TENSOR REMARK 3 L11: 4.5992 L22: 3.0558 REMARK 3 L33: 2.0395 L12: 3.7721 REMARK 3 L13: -6.8647 L23: -5.5938 REMARK 3 S TENSOR REMARK 3 S11: 0.4983 S12: -0.6578 S13: 0.3124 REMARK 3 S21: 0.5471 S22: -0.5919 S23: -0.2037 REMARK 3 S31: -0.2038 S32: 0.5546 S33: 0.1530 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 68 THROUGH 93 ) REMARK 3 ORIGIN FOR THE GROUP (A): 86.2348 16.4659 10.9561 REMARK 3 T TENSOR REMARK 3 T11: 0.3677 T22: 0.1713 REMARK 3 T33: 0.2826 T12: 0.0183 REMARK 3 T13: 0.0013 T23: 0.0533 REMARK 3 L TENSOR REMARK 3 L11: 8.4467 L22: 7.3147 REMARK 3 L33: 8.1840 L12: 0.5978 REMARK 3 L13: 0.3925 L23: 4.1745 REMARK 3 S TENSOR REMARK 3 S11: 0.0424 S12: 0.9009 S13: -0.1318 REMARK 3 S21: -0.8774 S22: -0.0409 S23: 0.0037 REMARK 3 S31: -0.0617 S32: -0.0244 S33: 0.0960 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 94 THROUGH 132 ) REMARK 3 ORIGIN FOR THE GROUP (A): 84.4395 23.4156 18.0464 REMARK 3 T TENSOR REMARK 3 T11: 0.3084 T22: 0.2380 REMARK 3 T33: 0.3360 T12: 0.0719 REMARK 3 T13: 0.0480 T23: 0.0027 REMARK 3 L TENSOR REMARK 3 L11: 4.3961 L22: 2.9067 REMARK 3 L33: 8.6031 L12: 0.6121 REMARK 3 L13: 2.3737 L23: 0.3440 REMARK 3 S TENSOR REMARK 3 S11: -0.1529 S12: -0.0434 S13: 0.3620 REMARK 3 S21: -0.3266 S22: 0.0669 S23: -0.0355 REMARK 3 S31: -0.3112 S32: -0.3170 S33: 0.0879 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 133 THROUGH 167 ) REMARK 3 ORIGIN FOR THE GROUP (A): 77.0496 11.0740 20.8048 REMARK 3 T TENSOR REMARK 3 T11: 0.3331 T22: 0.1883 REMARK 3 T33: 0.3489 T12: -0.0472 REMARK 3 T13: 0.0576 T23: 0.0123 REMARK 3 L TENSOR REMARK 3 L11: 7.6918 L22: 7.4933 REMARK 3 L33: 7.1540 L12: -3.0240 REMARK 3 L13: 0.3871 L23: -2.2482 REMARK 3 S TENSOR REMARK 3 S11: -0.1073 S12: -0.0134 S13: -0.2041 REMARK 3 S21: 0.0199 S22: 0.0815 S23: 0.6144 REMARK 3 S31: 0.1575 S32: -0.7169 S33: -0.0098 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 168 THROUGH 190 ) REMARK 3 ORIGIN FOR THE GROUP (A): 80.0961 4.3966 25.1539 REMARK 3 T TENSOR REMARK 3 T11: 0.4912 T22: 0.2258 REMARK 3 T33: 0.4345 T12: 0.0862 REMARK 3 T13: 0.0525 T23: 0.0558 REMARK 3 L TENSOR REMARK 3 L11: 7.5861 L22: 5.9079 REMARK 3 L33: 7.6242 L12: 3.5726 REMARK 3 L13: -0.7722 L23: 0.1891 REMARK 3 S TENSOR REMARK 3 S11: -0.3549 S12: -0.5065 S13: -0.9737 REMARK 3 S21: 0.3627 S22: 0.0274 S23: 0.3357 REMARK 3 S31: 0.9123 S32: -0.4247 S33: 0.2880 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 191 THROUGH 203 ) REMARK 3 ORIGIN FOR THE GROUP (A): 91.6067 2.7929 27.6257 REMARK 3 T TENSOR REMARK 3 T11: 0.6236 T22: 0.4306 REMARK 3 T33: 0.2977 T12: -0.0408 REMARK 3 T13: 0.0911 T23: 0.0041 REMARK 3 L TENSOR REMARK 3 L11: 5.3973 L22: 9.2723 REMARK 3 L33: 5.2459 L12: -2.1420 REMARK 3 L13: 0.9282 L23: 3.2753 REMARK 3 S TENSOR REMARK 3 S11: -0.4290 S12: -0.3074 S13: -0.1407 REMARK 3 S21: 0.1673 S22: 0.4408 S23: 0.3921 REMARK 3 S31: -0.5630 S32: 0.5065 S33: -0.0023 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 204 THROUGH 219 ) REMARK 3 ORIGIN FOR THE GROUP (A): 92.4731 -1.9718 21.6191 REMARK 3 T TENSOR REMARK 3 T11: 0.6885 T22: 0.3801 REMARK 3 T33: 0.5806 T12: 0.1356 REMARK 3 T13: 0.1252 T23: 0.0160 REMARK 3 L TENSOR REMARK 3 L11: 8.2894 L22: 3.9993 REMARK 3 L33: 7.5274 L12: 4.3827 REMARK 3 L13: -2.8219 L23: -4.8101 REMARK 3 S TENSOR REMARK 3 S11: -0.8996 S12: -0.2537 S13: -0.7895 REMARK 3 S21: -0.5010 S22: -0.0260 S23: -0.4180 REMARK 3 S31: 1.4587 S32: 0.5622 S33: 0.7388 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 220 THROUGH 239 ) REMARK 3 ORIGIN FOR THE GROUP (A): 93.9961 7.1098 12.7364 REMARK 3 T TENSOR REMARK 3 T11: 0.5125 T22: 0.3286 REMARK 3 T33: 0.4523 T12: 0.0482 REMARK 3 T13: 0.1000 T23: -0.0070 REMARK 3 L TENSOR REMARK 3 L11: 8.9136 L22: 6.0238 REMARK 3 L33: 8.4655 L12: -0.5227 REMARK 3 L13: 2.0066 L23: 1.2634 REMARK 3 S TENSOR REMARK 3 S11: 0.6867 S12: 0.1451 S13: -0.8248 REMARK 3 S21: -0.5472 S22: -0.6512 S23: -0.4677 REMARK 3 S31: 0.5225 S32: 0.4485 S33: 0.0875 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4HQK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-NOV-12. REMARK 100 THE DEPOSITION ID IS D_1000075795. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-JUN-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.033 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL CRYO-COOLED REMARK 200 SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22401 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.249 REMARK 200 RESOLUTION RANGE LOW (A) : 41.030 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.15700 REMARK 200 FOR THE DATA SET : 10.2200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.29 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 5.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 1.00000 REMARK 200 FOR SHELL : 1.280 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1SHU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES, PH 7.5, 2% PEG400, 2 M REMARK 280 AMMONIUM SULFATE, EVAPORATION, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 4 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z REMARK 290 4555 Y+1/2,-X+1/2,Z REMARK 290 5555 -X+1/2,Y+1/2,-Z REMARK 290 6555 X+1/2,-Y+1/2,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 58.85350 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 58.85350 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 58.85350 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 58.85350 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 58.85350 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 58.85350 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 58.85350 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 58.85350 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 401 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 404 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 303 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 312 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 322 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 365 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 241 REMARK 465 HIS A 242 REMARK 465 HIS A 243 REMARK 465 HIS A 244 REMARK 465 HIS A 245 REMARK 465 HIS A 246 REMARK 465 ALA A 247 REMARK 465 LYS B 240 REMARK 465 HIS B 241 REMARK 465 HIS B 242 REMARK 465 HIS B 243 REMARK 465 HIS B 244 REMARK 465 HIS B 245 REMARK 465 HIS B 246 REMARK 465 ALA B 247 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 331 O HOH B 349 2.06 REMARK 500 O HOH B 345 O HOH B 350 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 44 78.20 -110.45 REMARK 500 HIS A 67 -52.16 -128.00 REMARK 500 ALA A 85 -123.12 -121.66 REMARK 500 SER A 94 -117.51 -125.91 REMARK 500 SER A 208 -56.40 -137.20 REMARK 500 ASN B 44 82.58 -150.18 REMARK 500 HIS B 67 -48.80 -133.04 REMARK 500 ALA B 85 -120.87 -116.29 REMARK 500 SER B 94 -123.40 -125.10 REMARK 500 HIS B 104 -0.82 72.84 REMARK 500 SER B 208 -48.09 -138.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4HQF RELATED DB: PDB REMARK 900 RELATED ID: 4HQL RELATED DB: PDB REMARK 900 RELATED ID: 4HQN RELATED DB: PDB REMARK 900 RELATED ID: 4HQO RELATED DB: PDB DBREF 4HQK A 41 240 UNP Q76NM2 Q76NM2_PLAF7 41 240 DBREF 4HQK B 41 240 UNP Q76NM2 Q76NM2_PLAF7 41 240 SEQADV 4HQK GLY A 55 UNP Q76NM2 CYS 55 ENGINEERED MUTATION SEQADV 4HQK SER A 132 UNP Q76NM2 ASN 132 ENGINEERED MUTATION SEQADV 4HQK HIS A 241 UNP Q76NM2 EXPRESSION TAG SEQADV 4HQK HIS A 242 UNP Q76NM2 EXPRESSION TAG SEQADV 4HQK HIS A 243 UNP Q76NM2 EXPRESSION TAG SEQADV 4HQK HIS A 244 UNP Q76NM2 EXPRESSION TAG SEQADV 4HQK HIS A 245 UNP Q76NM2 EXPRESSION TAG SEQADV 4HQK HIS A 246 UNP Q76NM2 EXPRESSION TAG SEQADV 4HQK ALA A 247 UNP Q76NM2 EXPRESSION TAG SEQADV 4HQK GLY B 55 UNP Q76NM2 CYS 55 ENGINEERED MUTATION SEQADV 4HQK SER B 132 UNP Q76NM2 ASN 132 ENGINEERED MUTATION SEQADV 4HQK HIS B 241 UNP Q76NM2 EXPRESSION TAG SEQADV 4HQK HIS B 242 UNP Q76NM2 EXPRESSION TAG SEQADV 4HQK HIS B 243 UNP Q76NM2 EXPRESSION TAG SEQADV 4HQK HIS B 244 UNP Q76NM2 EXPRESSION TAG SEQADV 4HQK HIS B 245 UNP Q76NM2 EXPRESSION TAG SEQADV 4HQK HIS B 246 UNP Q76NM2 EXPRESSION TAG SEQADV 4HQK ALA B 247 UNP Q76NM2 EXPRESSION TAG SEQRES 1 A 207 GLU VAL CYS ASN ASP GLU VAL ASP LEU TYR LEU LEU MET SEQRES 2 A 207 ASP GLY SER GLY SER ILE ARG ARG HIS ASN TRP VAL ASN SEQRES 3 A 207 HIS ALA VAL PRO LEU ALA MET LYS LEU ILE GLN GLN LEU SEQRES 4 A 207 ASN LEU ASN ASP ASN ALA ILE HIS LEU TYR ALA SER VAL SEQRES 5 A 207 PHE SER ASN ASN ALA ARG GLU ILE ILE ARG LEU HIS SER SEQRES 6 A 207 ASP ALA SER LYS ASN LYS GLU LYS ALA LEU ILE ILE ILE SEQRES 7 A 207 LYS SER LEU LEU SER THR ASN LEU PRO TYR GLY LYS THR SEQRES 8 A 207 SER LEU THR ASP ALA LEU LEU GLN VAL ARG LYS HIS LEU SEQRES 9 A 207 ASN ASP ARG ILE ASN ARG GLU ASN ALA ASN GLN LEU VAL SEQRES 10 A 207 VAL ILE LEU THR ASP GLY ILE PRO ASP SER ILE GLN ASP SEQRES 11 A 207 SER LEU LYS GLU SER ARG LYS LEU SER ASP ARG GLY VAL SEQRES 12 A 207 LYS ILE ALA VAL PHE GLY ILE GLY GLN GLY ILE ASN VAL SEQRES 13 A 207 ALA PHE ASN ARG PHE LEU VAL GLY CYS HIS PRO SER ASP SEQRES 14 A 207 GLY LYS CYS ASN LEU TYR ALA ASP SER ALA TRP GLU ASN SEQRES 15 A 207 VAL LYS ASN VAL ILE GLY PRO PHE MET LYS ALA VAL CYS SEQRES 16 A 207 VAL GLU VAL GLU LYS HIS HIS HIS HIS HIS HIS ALA SEQRES 1 B 207 GLU VAL CYS ASN ASP GLU VAL ASP LEU TYR LEU LEU MET SEQRES 2 B 207 ASP GLY SER GLY SER ILE ARG ARG HIS ASN TRP VAL ASN SEQRES 3 B 207 HIS ALA VAL PRO LEU ALA MET LYS LEU ILE GLN GLN LEU SEQRES 4 B 207 ASN LEU ASN ASP ASN ALA ILE HIS LEU TYR ALA SER VAL SEQRES 5 B 207 PHE SER ASN ASN ALA ARG GLU ILE ILE ARG LEU HIS SER SEQRES 6 B 207 ASP ALA SER LYS ASN LYS GLU LYS ALA LEU ILE ILE ILE SEQRES 7 B 207 LYS SER LEU LEU SER THR ASN LEU PRO TYR GLY LYS THR SEQRES 8 B 207 SER LEU THR ASP ALA LEU LEU GLN VAL ARG LYS HIS LEU SEQRES 9 B 207 ASN ASP ARG ILE ASN ARG GLU ASN ALA ASN GLN LEU VAL SEQRES 10 B 207 VAL ILE LEU THR ASP GLY ILE PRO ASP SER ILE GLN ASP SEQRES 11 B 207 SER LEU LYS GLU SER ARG LYS LEU SER ASP ARG GLY VAL SEQRES 12 B 207 LYS ILE ALA VAL PHE GLY ILE GLY GLN GLY ILE ASN VAL SEQRES 13 B 207 ALA PHE ASN ARG PHE LEU VAL GLY CYS HIS PRO SER ASP SEQRES 14 B 207 GLY LYS CYS ASN LEU TYR ALA ASP SER ALA TRP GLU ASN SEQRES 15 B 207 VAL LYS ASN VAL ILE GLY PRO PHE MET LYS ALA VAL CYS SEQRES 16 B 207 VAL GLU VAL GLU LYS HIS HIS HIS HIS HIS HIS ALA HET SO4 A 301 5 HETNAM SO4 SULFATE ION FORMUL 3 SO4 O4 S 2- FORMUL 4 HOH *163(H2 O) HELIX 1 1 ARG A 60 HIS A 67 1 8 HELIX 2 2 HIS A 67 GLN A 78 1 12 HELIX 3 3 ASP A 106 LYS A 109 5 4 HELIX 4 4 ASN A 110 SER A 120 1 11 HELIX 5 5 LEU A 121 THR A 124 5 4 HELIX 6 6 SER A 132 ASP A 146 1 15 HELIX 7 7 SER A 167 ASP A 180 1 14 HELIX 8 8 ASN A 195 GLY A 204 1 10 HELIX 9 9 ALA A 219 GLU A 221 5 3 HELIX 10 10 ASN A 222 LYS A 240 1 19 HELIX 11 11 ARG B 60 HIS B 67 1 8 HELIX 12 12 HIS B 67 GLN B 77 1 11 HELIX 13 13 ASN B 110 SER B 120 1 11 HELIX 14 14 LEU B 121 THR B 124 5 4 HELIX 15 15 SER B 132 ASP B 146 1 15 HELIX 16 16 SER B 167 ASP B 180 1 14 HELIX 17 17 ASN B 195 GLY B 204 1 10 HELIX 18 18 ALA B 219 GLU B 221 5 3 HELIX 19 19 ASN B 222 GLU B 239 1 18 SHEET 1 A 6 ALA A 97 ILE A 101 0 SHEET 2 A 6 ILE A 86 PHE A 93 -1 N VAL A 92 O ARG A 98 SHEET 3 A 6 VAL A 47 ASP A 54 1 N LEU A 51 O TYR A 89 SHEET 4 A 6 ASN A 154 THR A 161 1 O LEU A 156 N TYR A 50 SHEET 5 A 6 LYS A 184 ILE A 190 1 O PHE A 188 N ILE A 159 SHEET 6 A 6 TYR A 215 SER A 218 1 O ALA A 216 N GLY A 189 SHEET 1 B 6 ALA B 97 ILE B 101 0 SHEET 2 B 6 HIS B 87 PHE B 93 -1 N VAL B 92 O ARG B 98 SHEET 3 B 6 VAL B 47 ASP B 54 1 N LEU B 51 O TYR B 89 SHEET 4 B 6 ASN B 154 THR B 161 1 O LEU B 156 N TYR B 50 SHEET 5 B 6 LYS B 184 ILE B 190 1 O ALA B 186 N VAL B 157 SHEET 6 B 6 TYR B 215 SER B 218 1 O ALA B 216 N GLY B 189 SSBOND 1 CYS A 43 CYS A 235 1555 1555 2.03 SSBOND 2 CYS A 205 CYS A 212 1555 1555 2.04 SSBOND 3 CYS B 43 CYS B 235 1555 1555 2.02 SSBOND 4 CYS B 205 CYS B 212 1555 1555 2.04 CISPEP 1 LEU A 126 PRO A 127 0 2.46 CISPEP 2 LEU B 126 PRO B 127 0 0.52 SITE 1 AC1 8 ARG A 98 THR A 124 ASN A 125 TYR A 128 SITE 2 AC1 8 ARG B 98 THR B 124 ASN B 125 TYR B 128 CRYST1 117.707 117.707 65.491 90.00 90.00 90.00 P 4 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008496 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008496 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015269 0.00000