data_4HQX # _entry.id 4HQX # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4HQX pdb_00004hqx 10.2210/pdb4hqx/pdb NDB NA2115 ? ? RCSB RCSB075808 ? ? WWPDB D_1000075808 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3MJG 'PDGF-BB receptor complex' unspecified PDB 4HQU 'CRYSTAL STRUCTURE OF HUMAN PDGF-BB IN COMPLEX WITH A Modified nucleotide aptamer (SOMAmer SL5)' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4HQX _pdbx_database_status.recvd_initial_deposition_date 2012-10-26 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Davies, D.R.' 1 'Edwards, T.E.' 2 'Janjic, N.' 3 'Gelinas, A.D.' 4 'Zhang, C.' 5 'Jarvis, T.C.' 6 # _citation.id primary _citation.title 'Unique motifs and hydrophobic interactions shape the binding of modified DNA ligands to protein targets.' _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_volume 109 _citation.page_first 19971 _citation.page_last 19976 _citation.year 2012 _citation.journal_id_ASTM PNASA6 _citation.country US _citation.journal_id_ISSN 0027-8424 _citation.journal_id_CSD 0040 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23139410 _citation.pdbx_database_id_DOI 10.1073/pnas.1213933109 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Davies, D.R.' 1 ? primary 'Gelinas, A.D.' 2 ? primary 'Zhang, C.' 3 ? primary 'Rohloff, J.C.' 4 ? primary 'Carter, J.D.' 5 ? primary ;O'Connell, D. ; 6 ? primary 'Waugh, S.M.' 7 ? primary 'Wolk, S.K.' 8 ? primary 'Mayfield, W.S.' 9 ? primary 'Burgin, A.B.' 10 ? primary 'Edwards, T.E.' 11 ? primary 'Stewart, L.J.' 12 ? primary 'Gold, L.' 13 ? primary 'Janjic, N.' 14 ? primary 'Jarvis, T.C.' 15 ? # _cell.entry_id 4HQX _cell.length_a 59.430 _cell.length_b 59.430 _cell.length_c 168.160 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4HQX _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Platelet-derived growth factor subunit B' 11645.725 1 ? ? 'PDGF-BB, UNP residues 82-109' ? 2 polymer syn 'SOMAmer SL4' 8529.943 1 ? ? ? ? 3 non-polymer syn 'SODIUM ION' 22.990 1 ? ? ? ? 4 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 5 water nat water 18.015 58 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name ;PDGF subunit B, PDGF-2, Platelet-derived growth factor B chain, Platelet-derived growth factor beta polypeptide, Proto-oncogene c-Sis ; # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;SLGSLTIAEPAMIAECKTRTEVFEISRRLIDRTNANFLVWPPCVEVQRCSGCCNNRNVQCRPTQVQLRPVQVRKIEIVRK KPIFKKATVTLEDHLACKCETV ; ;SLGSLTIAEPAMIAECKTRTEVFEISRRLIDRTNANFLVWPPCVEVQRCSGCCNNRNVQCRPTQVQLRPVQVRKIEIVRK KPIFKKATVTLEDHLACKCETV ; A ? 2 polydeoxyribonucleotide no yes ;(DUZ)(DUZ)(A2M)(DC)(PE6)(DG)(DUZ)(UBI)(DA)(DC)(A2M)(DC)(DG)(DC)(DG)(DUZ)(UPE) (18Q)(DA)(DUZ)(A2M)(DG)(DC)(18M) ; XXACXGXXACACGCGXXXAXAGCX C ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 LEU n 1 3 GLY n 1 4 SER n 1 5 LEU n 1 6 THR n 1 7 ILE n 1 8 ALA n 1 9 GLU n 1 10 PRO n 1 11 ALA n 1 12 MET n 1 13 ILE n 1 14 ALA n 1 15 GLU n 1 16 CYS n 1 17 LYS n 1 18 THR n 1 19 ARG n 1 20 THR n 1 21 GLU n 1 22 VAL n 1 23 PHE n 1 24 GLU n 1 25 ILE n 1 26 SER n 1 27 ARG n 1 28 ARG n 1 29 LEU n 1 30 ILE n 1 31 ASP n 1 32 ARG n 1 33 THR n 1 34 ASN n 1 35 ALA n 1 36 ASN n 1 37 PHE n 1 38 LEU n 1 39 VAL n 1 40 TRP n 1 41 PRO n 1 42 PRO n 1 43 CYS n 1 44 VAL n 1 45 GLU n 1 46 VAL n 1 47 GLN n 1 48 ARG n 1 49 CYS n 1 50 SER n 1 51 GLY n 1 52 CYS n 1 53 CYS n 1 54 ASN n 1 55 ASN n 1 56 ARG n 1 57 ASN n 1 58 VAL n 1 59 GLN n 1 60 CYS n 1 61 ARG n 1 62 PRO n 1 63 THR n 1 64 GLN n 1 65 VAL n 1 66 GLN n 1 67 LEU n 1 68 ARG n 1 69 PRO n 1 70 VAL n 1 71 GLN n 1 72 VAL n 1 73 ARG n 1 74 LYS n 1 75 ILE n 1 76 GLU n 1 77 ILE n 1 78 VAL n 1 79 ARG n 1 80 LYS n 1 81 LYS n 1 82 PRO n 1 83 ILE n 1 84 PHE n 1 85 LYS n 1 86 LYS n 1 87 ALA n 1 88 THR n 1 89 VAL n 1 90 THR n 1 91 LEU n 1 92 GLU n 1 93 ASP n 1 94 HIS n 1 95 LEU n 1 96 ALA n 1 97 CYS n 1 98 LYS n 1 99 CYS n 1 100 GLU n 1 101 THR n 1 102 VAL n 2 1 DUZ n 2 2 DUZ n 2 3 A2M n 2 4 DC n 2 5 PE6 n 2 6 DG n 2 7 DUZ n 2 8 UBI n 2 9 DA n 2 10 DC n 2 11 A2M n 2 12 DC n 2 13 DG n 2 14 DC n 2 15 DG n 2 16 DUZ n 2 17 UPE n 2 18 18Q n 2 19 DA n 2 20 DUZ n 2 21 A2M n 2 22 DG n 2 23 DC n 2 24 18M n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'Synthesized oligonucleotide' # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP PDGFB_HUMAN P01127 1 ;SLGSLTIAEPAMIAECKTRTEVFEISRRLIDRTNANFLVWPPCVEVQRCSGCCNNRNVQCRPTQVQLRPVQVRKIEIVRK KPIFKKATVTLEDHLACKCETVAAARPVT ; 82 ? 2 PDB 4HQX 4HQX 2 XXACXGXXACACGCGXXXAXAGCX ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4HQX A 1 ? 102 ? P01127 82 ? 183 ? 1 102 2 2 4HQX C 1 ? 24 ? 4HQX 1 ? 24 ? 1 24 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 18M 'RNA linking' n ;2'-O-methylguanosine 3',5'-bis(dihydrogen phosphate) ; ? 'C11 H17 N5 O11 P2' 457.227 18Q 'DNA linking' n ;2'-deoxy-5-[(thiophen-2-ylmethyl)carbamoyl]uridine 5'-(dihydrogen phosphate) ; ? 'C15 H18 N3 O9 P S' 447.357 A2M 'RNA linking' n ;2'-O-methyladenosine 5'-(dihydrogen phosphate) ; ? 'C11 H16 N5 O7 P' 361.248 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DUZ 'DNA linking' n ;5-(benzylcarbamoyl)-2'-deoxyuridine 5'-(dihydrogen phosphate) ; ? 'C17 H20 N3 O9 P' 441.329 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 PE6 non-polymer . 'PHOSPHORYL-HEXAETHYLENE GLYCOL' ? 'C12 H27 O10 P' 362.311 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 UBI 'DNA linking' n ;2'-deoxy-5-[(2-methylpropyl)carbamoyl]uridine 5'-(dihydrogen phosphate) ; ? 'C14 H22 N3 O9 P' 407.313 UPE 'DNA linking' n ;2'-deoxy-5-[(2-phenylethyl)carbamoyl]uridine 5'-(dihydrogen phosphate) ; ? 'C18 H22 N3 O9 P' 455.356 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4HQX _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.68 _exptl_crystal.density_percent_sol 66.57 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 289 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4.50 _exptl_crystal_grow.pdbx_details ;PROPLEX E1: 0.1 M MAGNESIUM ACETATE, 0.1 M SODIUM ACETATE PH 4.5, 8% PEG 8000, VAPOR DIFFUSION, TEMPERATURE 289K, VAPOR DIFFUSION, SITTING DROP ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.pdbx_collection_date 2011-08-01 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.979176 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-ID' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-ID _diffrn_source.pdbx_wavelength 0.979176 _diffrn_source.pdbx_wavelength_list 0.979176 # _reflns.entry_id 4HQX _reflns.observed_criterion_sigma_I -3.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 19.675 _reflns.d_resolution_high 2.300 _reflns.number_obs 13750 _reflns.number_all ? _reflns.percent_possible_obs 97.2 _reflns.pdbx_Rmerge_I_obs 0.06400 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 19.2900 _reflns.B_iso_Wilson_estimate 50.08 _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.30 _reflns_shell.d_res_low 2.36 _reflns_shell.percent_possible_all 98.4 _reflns_shell.Rmerge_I_obs 0.57200 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.600 _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 4HQX _refine.ls_number_reflns_obs 13750 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 19.675 _refine.ls_d_res_high 2.30 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.241 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.239 _refine.ls_R_factor_R_free 0.279 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.900 _refine.ls_number_reflns_R_free 679 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.939 _refine.correlation_coeff_Fo_to_Fc_free 0.920 _refine.B_iso_mean 42.86 _refine.aniso_B[1][1] 2.33000 _refine.aniso_B[2][2] 2.33000 _refine.aniso_B[3][3] -4.66000 _refine.aniso_B[1][2] 0.00000 _refine.aniso_B[1][3] 0.00000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN USED IF' _refine.pdbx_starting_model 'CHAIN A of 3MJG' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.238 _refine.pdbx_overall_ESU_R_Free 0.212 _refine.overall_SU_ML 0.183 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 8.240 _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 738 _refine_hist.pdbx_number_atoms_nucleic_acid 553 _refine_hist.pdbx_number_atoms_ligand 2 _refine_hist.number_atoms_solvent 58 _refine_hist.number_atoms_total 1351 _refine_hist.d_res_high 2.30 _refine_hist.d_res_low 19.675 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 0.007 0.018 ? 1377 ? 'X-RAY DIFFRACTION' r_angle_refined_deg 2.005 2.135 ? 1968 ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 6.101 5.000 ? 96 ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 42.582 22.813 ? 32 ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 14.965 15.000 ? 135 ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 25.856 15.000 ? 9 ? 'X-RAY DIFFRACTION' r_chiral_restr 0.100 0.200 ? 198 ? 'X-RAY DIFFRACTION' r_gen_planes_refined 0.006 0.021 ? 886 ? 'X-RAY DIFFRACTION' # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.30 _refine_ls_shell.d_res_low 2.36 _refine_ls_shell.number_reflns_R_work 824 _refine_ls_shell.R_factor_R_work 0.3660 _refine_ls_shell.percent_reflns_obs 98.19 _refine_ls_shell.R_factor_R_free 0.5260 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 45 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 4HQX _struct.title 'CRYSTAL STRUCTURE OF HUMAN PDGF-BB IN COMPLEX WITH A Modified nucleotide aptamer (SOMAmer SL4)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4HQX _struct_keywords.pdbx_keywords HORMONE/DNA _struct_keywords.text 'Growth factor, SELEX, aptamer, 5-modified deoxyuridine, HORMONE-DNA complex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 5 ? # _struct_biol.id 1 _struct_biol.details ? # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id 1 _struct_conf.beg_label_comp_id SER _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 26 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id ASP _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 31 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id SER _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 26 _struct_conf.end_auth_comp_id ASP _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 31 _struct_conf.pdbx_PDB_helix_class 1 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 16 SG ? ? ? 1_555 A CYS 60 SG ? ? A CYS 16 A CYS 60 1_555 ? ? ? ? ? ? ? 2.043 ? ? disulf2 disulf ? ? A CYS 43 SG ? ? ? 1_555 A CYS 52 SG ? ? A CYS 43 A CYS 52 8_555 ? ? ? ? ? ? ? 2.170 ? ? disulf3 disulf ? ? A CYS 49 SG ? ? ? 1_555 A CYS 97 SG ? ? A CYS 49 A CYS 97 1_555 ? ? ? ? ? ? ? 2.051 ? ? disulf4 disulf ? ? A CYS 53 SG ? ? ? 1_555 A CYS 99 SG ? ? A CYS 53 A CYS 99 1_555 ? ? ? ? ? ? ? 2.040 ? ? covale1 covale both ? B DC 4 "O3'" ? ? ? 1_555 B PE6 5 P1 ? ? C DC 4 C PE6 5 1_555 ? ? ? ? ? ? ? 1.605 ? ? covale2 covale one ? B PE6 5 O20 ? ? ? 1_555 B DG 6 P ? ? C PE6 5 C DG 6 1_555 ? ? ? ? ? ? ? 1.487 ? ? covale3 covale both ? B DG 6 "O3'" ? ? ? 1_555 B DUZ 7 P ? ? C DG 6 C DUZ 7 1_555 ? ? ? ? ? ? ? 1.593 ? ? covale4 covale both ? B DC 10 "O3'" ? ? ? 1_555 B A2M 11 P ? ? C DC 10 C A2M 11 1_555 ? ? ? ? ? ? ? 1.592 ? ? covale5 covale both ? B DG 15 "O3'" ? ? ? 1_555 B DUZ 16 P ? ? C DG 15 C DUZ 16 1_555 ? ? ? ? ? ? ? 1.584 ? ? covale6 covale both ? B DA 19 "O3'" ? ? ? 1_555 B DUZ 20 P ? ? C DA 19 C DUZ 20 1_555 ? ? ? ? ? ? ? 1.606 ? ? metalc1 metalc ? ? B DC 10 O2 ? ? ? 1_555 C NA . NA ? ? C DC 10 C NA 101 1_555 ? ? ? ? ? ? ? 2.378 ? ? metalc2 metalc ? ? B DC 10 "O4'" ? ? ? 1_555 C NA . NA ? ? C DC 10 C NA 101 1_555 ? ? ? ? ? ? ? 3.075 ? ? metalc3 metalc ? ? B DG 22 O6 ? ? ? 1_555 C NA . NA ? ? C DG 22 C NA 101 1_555 ? ? ? ? ? ? ? 2.392 ? ? metalc4 metalc ? ? C NA . NA ? ? ? 1_555 F HOH . O ? ? C NA 101 C HOH 210 1_555 ? ? ? ? ? ? ? 2.582 ? ? metalc5 metalc ? ? C NA . NA ? ? ? 1_555 F HOH . O ? ? C NA 101 C HOH 211 1_555 ? ? ? ? ? ? ? 2.285 ? ? metalc6 metalc ? ? D MG . MG ? ? ? 1_555 F HOH . O ? ? C MG 102 C HOH 201 1_555 ? ? ? ? ? ? ? 2.181 ? ? metalc7 metalc ? ? D MG . MG ? ? ? 1_555 F HOH . O ? ? C MG 102 C HOH 202 1_555 ? ? ? ? ? ? ? 2.180 ? ? metalc8 metalc ? ? D MG . MG ? ? ? 1_555 F HOH . O ? ? C MG 102 C HOH 203 1_555 ? ? ? ? ? ? ? 2.179 ? ? metalc9 metalc ? ? D MG . MG ? ? ? 1_555 F HOH . O ? ? C MG 102 C HOH 204 1_555 ? ? ? ? ? ? ? 2.176 ? ? metalc10 metalc ? ? D MG . MG ? ? ? 1_555 F HOH . O ? ? C MG 102 C HOH 205 1_555 ? ? ? ? ? ? ? 2.167 ? ? metalc11 metalc ? ? D MG . MG ? ? ? 1_555 F HOH . O ? ? C MG 102 C HOH 206 1_555 ? ? ? ? ? ? ? 2.174 ? ? hydrog1 hydrog ? ? B DC 4 N3 ? ? ? 1_555 B DG 6 N1 ? ? C DC 4 C DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? B DC 4 N4 ? ? ? 1_555 B DG 6 O6 ? ? C DC 4 C DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? B DC 4 O2 ? ? ? 1_555 B DG 6 N2 ? ? C DC 4 C DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? B DC 10 N3 ? ? ? 1_555 B DG 15 N1 ? ? C DC 10 C DG 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? B DC 10 N4 ? ? ? 1_555 B DG 15 O6 ? ? C DC 10 C DG 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? B DC 10 O2 ? ? ? 1_555 B DG 15 N2 ? ? C DC 10 C DG 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? B DG 13 N1 ? ? ? 1_555 B DC 23 N3 ? ? C DG 13 C DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? B DG 13 N2 ? ? ? 1_555 B DC 23 O2 ? ? C DG 13 C DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? B DG 13 O6 ? ? ? 1_555 B DC 23 N4 ? ? C DG 13 C DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? B DC 14 N3 ? ? ? 1_555 B DG 22 N1 ? ? C DC 14 C DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? B DC 14 N4 ? ? ? 1_555 B DG 22 O6 ? ? C DC 14 C DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? B DC 14 O2 ? ? ? 1_555 B DG 22 N2 ? ? C DC 14 C DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? B DG 15 N2 ? ? ? 1_555 B A2M 21 N7 ? ? C DG 15 C A2M 21 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog14 hydrog ? ? B DG 15 N3 ? ? ? 1_555 B A2M 21 N6 ? ? C DG 15 C A2M 21 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? metalc ? ? hydrog ? ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id TRP _struct_mon_prot_cis.label_seq_id 40 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id TRP _struct_mon_prot_cis.auth_seq_id 40 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 41 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 41 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -1.18 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LYS A 17 ? GLU A 24 ? LYS A 17 GLU A 24 A 2 CYS A 43 ? SER A 50 ? CYS A 43 SER A 50 B 1 PHE A 37 ? TRP A 40 ? PHE A 37 TRP A 40 B 2 GLN A 59 ? VAL A 78 ? GLN A 59 VAL A 78 B 3 LYS A 81 ? GLU A 100 ? LYS A 81 GLU A 100 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N GLU A 21 ? N GLU A 21 O VAL A 46 ? O VAL A 46 B 1 2 N TRP A 40 ? N TRP A 40 O ARG A 73 ? O ARG A 73 B 2 3 N ARG A 68 ? N ARG A 68 O LEU A 91 ? O LEU A 91 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software C NA 101 ? 5 'BINDING SITE FOR RESIDUE NA C 101' AC2 Software C MG 102 ? 12 'BINDING SITE FOR RESIDUE MG C 102' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 DC B 10 ? DC C 10 . ? 1_555 ? 2 AC1 5 DG B 15 ? DG C 15 . ? 1_555 ? 3 AC1 5 DG B 22 ? DG C 22 . ? 1_555 ? 4 AC1 5 HOH F . ? HOH C 210 . ? 1_555 ? 5 AC1 5 HOH F . ? HOH C 211 . ? 1_555 ? 6 AC2 12 HOH F . ? HOH C 201 . ? 7_555 ? 7 AC2 12 HOH F . ? HOH C 201 . ? 1_555 ? 8 AC2 12 HOH F . ? HOH C 202 . ? 1_555 ? 9 AC2 12 HOH F . ? HOH C 202 . ? 7_555 ? 10 AC2 12 HOH F . ? HOH C 203 . ? 7_555 ? 11 AC2 12 HOH F . ? HOH C 203 . ? 1_555 ? 12 AC2 12 HOH F . ? HOH C 204 . ? 7_555 ? 13 AC2 12 HOH F . ? HOH C 204 . ? 1_555 ? 14 AC2 12 HOH F . ? HOH C 205 . ? 7_555 ? 15 AC2 12 HOH F . ? HOH C 205 . ? 1_555 ? 16 AC2 12 HOH F . ? HOH C 206 . ? 7_555 ? 17 AC2 12 HOH F . ? HOH C 206 . ? 1_555 ? # _database_PDB_matrix.entry_id 4HQX _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4HQX _atom_sites.fract_transf_matrix[1][1] 0.016827 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016827 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.005947 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N NA O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 1 ? ? ? A . n A 1 2 LEU 2 2 ? ? ? A . n A 1 3 GLY 3 3 ? ? ? A . n A 1 4 SER 4 4 ? ? ? A . n A 1 5 LEU 5 5 ? ? ? A . n A 1 6 THR 6 6 ? ? ? A . n A 1 7 ILE 7 7 7 ILE ILE A . n A 1 8 ALA 8 8 8 ALA ALA A . n A 1 9 GLU 9 9 9 GLU GLU A . n A 1 10 PRO 10 10 10 PRO PRO A . n A 1 11 ALA 11 11 11 ALA ALA A . n A 1 12 MET 12 12 12 MET MET A . n A 1 13 ILE 13 13 13 ILE ILE A . n A 1 14 ALA 14 14 14 ALA ALA A . n A 1 15 GLU 15 15 15 GLU GLU A . n A 1 16 CYS 16 16 16 CYS CYS A . n A 1 17 LYS 17 17 17 LYS LYS A . n A 1 18 THR 18 18 18 THR THR A . n A 1 19 ARG 19 19 19 ARG ARG A . n A 1 20 THR 20 20 20 THR THR A . n A 1 21 GLU 21 21 21 GLU GLU A . n A 1 22 VAL 22 22 22 VAL VAL A . n A 1 23 PHE 23 23 23 PHE PHE A . n A 1 24 GLU 24 24 24 GLU GLU A . n A 1 25 ILE 25 25 25 ILE ILE A . n A 1 26 SER 26 26 26 SER SER A . n A 1 27 ARG 27 27 27 ARG ARG A . n A 1 28 ARG 28 28 28 ARG ARG A . n A 1 29 LEU 29 29 29 LEU LEU A . n A 1 30 ILE 30 30 30 ILE ILE A . n A 1 31 ASP 31 31 31 ASP ASP A . n A 1 32 ARG 32 32 32 ARG ARG A . n A 1 33 THR 33 33 33 THR THR A . n A 1 34 ASN 34 34 34 ASN ASN A . n A 1 35 ALA 35 35 35 ALA ALA A . n A 1 36 ASN 36 36 36 ASN ASN A . n A 1 37 PHE 37 37 37 PHE PHE A . n A 1 38 LEU 38 38 38 LEU LEU A . n A 1 39 VAL 39 39 39 VAL VAL A . n A 1 40 TRP 40 40 40 TRP TRP A . n A 1 41 PRO 41 41 41 PRO PRO A . n A 1 42 PRO 42 42 42 PRO PRO A . n A 1 43 CYS 43 43 43 CYS CYS A . n A 1 44 VAL 44 44 44 VAL VAL A . n A 1 45 GLU 45 45 45 GLU GLU A . n A 1 46 VAL 46 46 46 VAL VAL A . n A 1 47 GLN 47 47 47 GLN GLN A . n A 1 48 ARG 48 48 48 ARG ARG A . n A 1 49 CYS 49 49 49 CYS CYS A . n A 1 50 SER 50 50 50 SER SER A . n A 1 51 GLY 51 51 51 GLY GLY A . n A 1 52 CYS 52 52 52 CYS CYS A . n A 1 53 CYS 53 53 53 CYS CYS A . n A 1 54 ASN 54 54 54 ASN ASN A . n A 1 55 ASN 55 55 55 ASN ASN A . n A 1 56 ARG 56 56 56 ARG ARG A . n A 1 57 ASN 57 57 57 ASN ASN A . n A 1 58 VAL 58 58 58 VAL VAL A . n A 1 59 GLN 59 59 59 GLN GLN A . n A 1 60 CYS 60 60 60 CYS CYS A . n A 1 61 ARG 61 61 61 ARG ARG A . n A 1 62 PRO 62 62 62 PRO PRO A . n A 1 63 THR 63 63 63 THR THR A . n A 1 64 GLN 64 64 64 GLN GLN A . n A 1 65 VAL 65 65 65 VAL VAL A . n A 1 66 GLN 66 66 66 GLN GLN A . n A 1 67 LEU 67 67 67 LEU LEU A . n A 1 68 ARG 68 68 68 ARG ARG A . n A 1 69 PRO 69 69 69 PRO PRO A . n A 1 70 VAL 70 70 70 VAL VAL A . n A 1 71 GLN 71 71 71 GLN GLN A . n A 1 72 VAL 72 72 72 VAL VAL A . n A 1 73 ARG 73 73 73 ARG ARG A . n A 1 74 LYS 74 74 74 LYS LYS A . n A 1 75 ILE 75 75 75 ILE ILE A . n A 1 76 GLU 76 76 76 GLU GLU A . n A 1 77 ILE 77 77 77 ILE ILE A . n A 1 78 VAL 78 78 78 VAL VAL A . n A 1 79 ARG 79 79 79 ARG ARG A . n A 1 80 LYS 80 80 80 LYS LYS A . n A 1 81 LYS 81 81 81 LYS LYS A . n A 1 82 PRO 82 82 82 PRO PRO A . n A 1 83 ILE 83 83 83 ILE ILE A . n A 1 84 PHE 84 84 84 PHE PHE A . n A 1 85 LYS 85 85 85 LYS LYS A . n A 1 86 LYS 86 86 86 LYS LYS A . n A 1 87 ALA 87 87 87 ALA ALA A . n A 1 88 THR 88 88 88 THR THR A . n A 1 89 VAL 89 89 89 VAL VAL A . n A 1 90 THR 90 90 90 THR THR A . n A 1 91 LEU 91 91 91 LEU LEU A . n A 1 92 GLU 92 92 92 GLU GLU A . n A 1 93 ASP 93 93 93 ASP ASP A . n A 1 94 HIS 94 94 94 HIS HIS A . n A 1 95 LEU 95 95 95 LEU LEU A . n A 1 96 ALA 96 96 96 ALA ALA A . n A 1 97 CYS 97 97 97 CYS CYS A . n A 1 98 LYS 98 98 98 LYS LYS A . n A 1 99 CYS 99 99 99 CYS CYS A . n A 1 100 GLU 100 100 100 GLU GLU A . n A 1 101 THR 101 101 101 THR THR A . n A 1 102 VAL 102 102 ? ? ? A . n B 2 1 DUZ 1 1 1 DUZ DUZ C . n B 2 2 DUZ 2 2 2 DUZ DUZ C . n B 2 3 A2M 3 3 3 A2M A2M C . n B 2 4 DC 4 4 4 DC DC C . n B 2 5 PE6 5 5 5 PE6 PE6 C . n B 2 6 DG 6 6 6 DG DG C . n B 2 7 DUZ 7 7 7 DUZ DUZ C . n B 2 8 UBI 8 8 8 UBI UBI C . n B 2 9 DA 9 9 9 DA DA C . n B 2 10 DC 10 10 10 DC DC C . n B 2 11 A2M 11 11 11 A2M A2M C . n B 2 12 DC 12 12 12 DC DC C . n B 2 13 DG 13 13 13 DG DG C . n B 2 14 DC 14 14 14 DC DC C . n B 2 15 DG 15 15 15 DG DG C . n B 2 16 DUZ 16 16 16 DUZ DUZ C . n B 2 17 UPE 17 17 17 UPE UPE C . n B 2 18 18Q 18 18 18 18Q 18Q C . n B 2 19 DA 19 19 19 DA DA C . n B 2 20 DUZ 20 20 20 DUZ DUZ C . n B 2 21 A2M 21 21 21 A2M A2M C . n B 2 22 DG 22 22 22 DG DG C . n B 2 23 DC 23 23 23 DC DC C . n B 2 24 18M 24 24 24 18M 18M C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NA 1 101 1 NA NA C . D 4 MG 1 102 1 MG MO6 C . E 5 HOH 1 201 1 HOH HOH A . E 5 HOH 2 202 2 HOH HOH A . E 5 HOH 3 203 3 HOH HOH A . E 5 HOH 4 204 4 HOH HOH A . E 5 HOH 5 205 5 HOH HOH A . E 5 HOH 6 206 6 HOH HOH A . E 5 HOH 7 207 7 HOH HOH A . E 5 HOH 8 208 8 HOH HOH A . E 5 HOH 9 209 9 HOH HOH A . E 5 HOH 10 210 10 HOH HOH A . E 5 HOH 11 211 11 HOH HOH A . E 5 HOH 12 212 12 HOH HOH A . E 5 HOH 13 213 13 HOH HOH A . E 5 HOH 14 214 14 HOH HOH A . E 5 HOH 15 215 15 HOH HOH A . E 5 HOH 16 216 16 HOH HOH A . E 5 HOH 17 217 18 HOH HOH A . E 5 HOH 18 218 20 HOH HOH A . E 5 HOH 19 219 21 HOH HOH A . E 5 HOH 20 220 26 HOH HOH A . E 5 HOH 21 221 32 HOH HOH A . E 5 HOH 22 222 33 HOH HOH A . E 5 HOH 23 223 34 HOH HOH A . E 5 HOH 24 224 35 HOH HOH A . E 5 HOH 25 225 36 HOH HOH A . E 5 HOH 26 226 38 HOH HOH A . E 5 HOH 27 227 39 HOH HOH A . E 5 HOH 28 228 40 HOH HOH A . E 5 HOH 29 229 41 HOH HOH A . E 5 HOH 30 230 42 HOH HOH A . E 5 HOH 31 231 43 HOH HOH A . E 5 HOH 32 232 44 HOH HOH A . E 5 HOH 33 233 45 HOH HOH A . E 5 HOH 34 234 46 HOH HOH A . E 5 HOH 35 235 47 HOH HOH A . E 5 HOH 36 236 48 HOH HOH A . E 5 HOH 37 237 52 HOH HOH A . F 5 HOH 1 201 1 HOH MO6 C . F 5 HOH 2 202 1 HOH MO6 C . F 5 HOH 3 203 1 HOH MO6 C . F 5 HOH 4 204 1 HOH MO6 C . F 5 HOH 5 205 1 HOH MO6 C . F 5 HOH 6 206 1 HOH MO6 C . F 5 HOH 7 207 17 HOH HOH C . F 5 HOH 8 208 19 HOH HOH C . F 5 HOH 9 209 22 HOH HOH C . F 5 HOH 10 210 23 HOH HOH C . F 5 HOH 11 211 24 HOH HOH C . F 5 HOH 12 212 25 HOH HOH C . F 5 HOH 13 213 27 HOH HOH C . F 5 HOH 14 214 28 HOH HOH C . F 5 HOH 15 215 29 HOH HOH C . F 5 HOH 16 216 30 HOH HOH C . F 5 HOH 17 217 31 HOH HOH C . F 5 HOH 18 218 37 HOH HOH C . F 5 HOH 19 219 49 HOH HOH C . F 5 HOH 20 220 50 HOH HOH C . F 5 HOH 21 221 51 HOH HOH C . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 B DUZ 1 C DUZ 1 ? DU ? 2 B DUZ 2 C DUZ 2 ? DU ? 3 B A2M 3 C A2M 3 ? A ? 4 B DUZ 7 C DUZ 7 ? DU ? 5 B UBI 8 C UBI 8 ? DU ? 6 B A2M 11 C A2M 11 ? A ? 7 B DUZ 16 C DUZ 16 ? DU ? 8 B UPE 17 C UPE 17 ? DU ? 9 B 18Q 18 C 18Q 18 ? DU ? 10 B DUZ 20 C DUZ 20 ? DU ? 11 B A2M 21 C A2M 21 ? A ? 12 B 18M 24 C 18M 24 ? G ? # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 10210 ? 1 MORE -10 ? 1 'SSA (A^2)' 18040 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 8_555 -y,-x,-z+1/2 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 84.0800000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O2 ? B DC 10 ? C DC 10 ? 1_555 NA ? C NA . ? C NA 101 ? 1_555 "O4'" ? B DC 10 ? C DC 10 ? 1_555 65.9 ? 2 O2 ? B DC 10 ? C DC 10 ? 1_555 NA ? C NA . ? C NA 101 ? 1_555 O6 ? B DG 22 ? C DG 22 ? 1_555 96.3 ? 3 "O4'" ? B DC 10 ? C DC 10 ? 1_555 NA ? C NA . ? C NA 101 ? 1_555 O6 ? B DG 22 ? C DG 22 ? 1_555 151.6 ? 4 O2 ? B DC 10 ? C DC 10 ? 1_555 NA ? C NA . ? C NA 101 ? 1_555 O ? F HOH . ? C HOH 210 ? 1_555 80.9 ? 5 "O4'" ? B DC 10 ? C DC 10 ? 1_555 NA ? C NA . ? C NA 101 ? 1_555 O ? F HOH . ? C HOH 210 ? 1_555 77.7 ? 6 O6 ? B DG 22 ? C DG 22 ? 1_555 NA ? C NA . ? C NA 101 ? 1_555 O ? F HOH . ? C HOH 210 ? 1_555 77.6 ? 7 O2 ? B DC 10 ? C DC 10 ? 1_555 NA ? C NA . ? C NA 101 ? 1_555 O ? F HOH . ? C HOH 211 ? 1_555 89.4 ? 8 "O4'" ? B DC 10 ? C DC 10 ? 1_555 NA ? C NA . ? C NA 101 ? 1_555 O ? F HOH . ? C HOH 211 ? 1_555 70.7 ? 9 O6 ? B DG 22 ? C DG 22 ? 1_555 NA ? C NA . ? C NA 101 ? 1_555 O ? F HOH . ? C HOH 211 ? 1_555 133.9 ? 10 O ? F HOH . ? C HOH 210 ? 1_555 NA ? C NA . ? C NA 101 ? 1_555 O ? F HOH . ? C HOH 211 ? 1_555 148.2 ? 11 O ? F HOH . ? C HOH 201 ? 1_555 MG ? D MG . ? C MG 102 ? 1_555 O ? F HOH . ? C HOH 202 ? 1_555 179.7 ? 12 O ? F HOH . ? C HOH 201 ? 1_555 MG ? D MG . ? C MG 102 ? 1_555 O ? F HOH . ? C HOH 203 ? 1_555 91.5 ? 13 O ? F HOH . ? C HOH 202 ? 1_555 MG ? D MG . ? C MG 102 ? 1_555 O ? F HOH . ? C HOH 203 ? 1_555 88.7 ? 14 O ? F HOH . ? C HOH 201 ? 1_555 MG ? D MG . ? C MG 102 ? 1_555 O ? F HOH . ? C HOH 204 ? 1_555 88.7 ? 15 O ? F HOH . ? C HOH 202 ? 1_555 MG ? D MG . ? C MG 102 ? 1_555 O ? F HOH . ? C HOH 204 ? 1_555 91.1 ? 16 O ? F HOH . ? C HOH 203 ? 1_555 MG ? D MG . ? C MG 102 ? 1_555 O ? F HOH . ? C HOH 204 ? 1_555 179.1 ? 17 O ? F HOH . ? C HOH 201 ? 1_555 MG ? D MG . ? C MG 102 ? 1_555 O ? F HOH . ? C HOH 205 ? 1_555 89.9 ? 18 O ? F HOH . ? C HOH 202 ? 1_555 MG ? D MG . ? C MG 102 ? 1_555 O ? F HOH . ? C HOH 205 ? 1_555 90.3 ? 19 O ? F HOH . ? C HOH 203 ? 1_555 MG ? D MG . ? C MG 102 ? 1_555 O ? F HOH . ? C HOH 205 ? 1_555 88.6 ? 20 O ? F HOH . ? C HOH 204 ? 1_555 MG ? D MG . ? C MG 102 ? 1_555 O ? F HOH . ? C HOH 205 ? 1_555 90.4 ? 21 O ? F HOH . ? C HOH 201 ? 1_555 MG ? D MG . ? C MG 102 ? 1_555 O ? F HOH . ? C HOH 206 ? 1_555 90.3 ? 22 O ? F HOH . ? C HOH 202 ? 1_555 MG ? D MG . ? C MG 102 ? 1_555 O ? F HOH . ? C HOH 206 ? 1_555 89.5 ? 23 O ? F HOH . ? C HOH 203 ? 1_555 MG ? D MG . ? C MG 102 ? 1_555 O ? F HOH . ? C HOH 206 ? 1_555 91.1 ? 24 O ? F HOH . ? C HOH 204 ? 1_555 MG ? D MG . ? C MG 102 ? 1_555 O ? F HOH . ? C HOH 206 ? 1_555 89.8 ? 25 O ? F HOH . ? C HOH 205 ? 1_555 MG ? D MG . ? C MG 102 ? 1_555 O ? F HOH . ? C HOH 206 ? 1_555 179.7 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-11-21 2 'Structure model' 1 1 2012-12-19 3 'Structure model' 1 2 2023-09-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' Advisory 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Database references' 5 3 'Structure model' 'Derived calculations' 6 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_initial_refinement_model 5 3 'Structure model' pdbx_struct_conn_angle 6 3 'Structure model' pdbx_unobs_or_zero_occ_atoms 7 3 'Structure model' struct_conn 8 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 4 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 6 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 7 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 8 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 9 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_comp_id' 10 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 11 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 12 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_atom_id' 13 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_comp_id' 14 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 15 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 16 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 17 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 18 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 19 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 20 3 'Structure model' '_pdbx_struct_conn_angle.value' 21 3 'Structure model' '_struct_conn.conn_type_id' 22 3 'Structure model' '_struct_conn.id' 23 3 'Structure model' '_struct_conn.pdbx_dist_value' 24 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 25 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 26 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 27 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 28 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 29 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 30 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 31 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 32 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 33 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 34 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 35 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 36 3 'Structure model' '_struct_conn.ptnr2_label_seq_id' 37 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 38 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 39 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal PHASER phasing . ? 1 REFMAC refinement 5.6.0117 ? 2 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C3'" C A2M 3 ? ? "O3'" C A2M 3 ? ? P C DC 4 ? ? 127.97 119.70 8.27 1.20 Y 2 1 "C3'" C DG 6 ? ? "O3'" C DG 6 ? ? P C DUZ 7 ? ? 127.92 119.70 8.22 1.20 Y # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ASN _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 36 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -79.34 _pdbx_validate_torsion.psi 46.26 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ILE 7 ? CG1 ? A ILE 7 CG1 2 1 Y 1 A ILE 7 ? CG2 ? A ILE 7 CG2 3 1 Y 1 A ILE 7 ? CD1 ? A ILE 7 CD1 4 1 Y 1 A ARG 32 ? CG ? A ARG 32 CG 5 1 Y 1 A ARG 32 ? CD ? A ARG 32 CD 6 1 Y 1 A ARG 32 ? NE ? A ARG 32 NE 7 1 Y 1 A ARG 32 ? CZ ? A ARG 32 CZ 8 1 Y 1 A ARG 32 ? NH1 ? A ARG 32 NH1 9 1 Y 1 A ARG 32 ? NH2 ? A ARG 32 NH2 10 1 Y 1 A ASN 57 ? CG ? A ASN 57 CG 11 1 Y 1 A ASN 57 ? OD1 ? A ASN 57 OD1 12 1 Y 1 A ASN 57 ? ND2 ? A ASN 57 ND2 13 1 Y 1 A GLN 59 ? CG ? A GLN 59 CG 14 1 Y 1 A GLN 59 ? CD ? A GLN 59 CD 15 1 Y 1 A GLN 59 ? OE1 ? A GLN 59 OE1 16 1 Y 1 A GLN 59 ? NE2 ? A GLN 59 NE2 17 1 Y 1 A LYS 80 ? CG ? A LYS 80 CG 18 1 Y 1 A LYS 80 ? CD ? A LYS 80 CD 19 1 Y 1 A LYS 80 ? CE ? A LYS 80 CE 20 1 Y 1 A LYS 80 ? NZ ? A LYS 80 NZ 21 1 Y 1 A LYS 81 ? CG ? A LYS 81 CG 22 1 Y 1 A LYS 81 ? CD ? A LYS 81 CD 23 1 Y 1 A LYS 81 ? CE ? A LYS 81 CE 24 1 Y 1 A LYS 81 ? NZ ? A LYS 81 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER 1 ? A SER 1 2 1 Y 1 A LEU 2 ? A LEU 2 3 1 Y 1 A GLY 3 ? A GLY 3 4 1 Y 1 A SER 4 ? A SER 4 5 1 Y 1 A LEU 5 ? A LEU 5 6 1 Y 1 A THR 6 ? A THR 6 7 1 Y 1 A VAL 102 ? A VAL 102 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 18M P P N N 1 18M "O5'" O N N 2 18M "C5'" C N N 3 18M "C4'" C N R 4 18M "O4'" O N N 5 18M "C3'" C N R 6 18M "O3'" O N N 7 18M "C2'" C N R 8 18M "O2'" O N N 9 18M "C1'" C N R 10 18M N9 N Y N 11 18M C8 C Y N 12 18M N7 N Y N 13 18M C5 C Y N 14 18M C6 C N N 15 18M O6 O N N 16 18M N1 N N N 17 18M C2 C N N 18 18M N2 N N N 19 18M N3 N N N 20 18M C4 C Y N 21 18M P1 P N N 22 18M O11 O N N 23 18M O12 O N N 24 18M O13 O N N 25 18M CM2 C N N 26 18M OP1 O N N 27 18M OP2 O N N 28 18M OP3 O N N 29 18M "H5'" H N N 30 18M "H5'A" H N N 31 18M "H4'" H N N 32 18M "H3'" H N N 33 18M "H2'" H N N 34 18M "H1'" H N N 35 18M H8 H N N 36 18M HN2 H N N 37 18M HN2A H N N 38 18M HN3 H N N 39 18M HO11 H N N 40 18M HO13 H N N 41 18M HM2 H N N 42 18M HM2A H N N 43 18M HM2B H N N 44 18M HOP1 H N N 45 18M HOP3 H N N 46 18Q P P N N 47 18Q N1 N N N 48 18Q C2 C N N 49 18Q O2 O N N 50 18Q N3 N N N 51 18Q C4 C N N 52 18Q O4 O N N 53 18Q C5 C N N 54 18Q C6 C N N 55 18Q "C1'" C N R 56 18Q "C2'" C N N 57 18Q C21 C N N 58 18Q O22 O N N 59 18Q N23 N N N 60 18Q C24 C N N 61 18Q C25 C Y N 62 18Q S26 S Y N 63 18Q C27 C Y N 64 18Q C28 C Y N 65 18Q C29 C Y N 66 18Q "C3'" C N S 67 18Q "O3'" O N N 68 18Q "C4'" C N R 69 18Q "O4'" O N N 70 18Q "C5'" C N N 71 18Q "O5'" O N N 72 18Q OP1 O N N 73 18Q OP2 O N N 74 18Q OP3 O N N 75 18Q HN3 H N N 76 18Q H6 H N N 77 18Q "H1'" H N N 78 18Q "H2'" H N N 79 18Q "H2'A" H N N 80 18Q HN23 H N N 81 18Q H24 H N N 82 18Q H24A H N N 83 18Q H27 H N N 84 18Q H28 H N N 85 18Q H29 H N N 86 18Q "H3'" H N N 87 18Q "HO3'" H N N 88 18Q "H4'" H N N 89 18Q "H5'" H N N 90 18Q "H5'A" H N N 91 18Q HOP1 H N N 92 18Q HOP3 H N N 93 A2M P P N N 94 A2M OP1 O N N 95 A2M OP3 O N N 96 A2M "O5'" O N N 97 A2M "C5'" C N N 98 A2M "C4'" C N R 99 A2M "O4'" O N N 100 A2M "C3'" C N R 101 A2M "O3'" O N N 102 A2M "C2'" C N R 103 A2M "O2'" O N N 104 A2M "C1'" C N R 105 A2M "CM'" C N N 106 A2M N9 N Y N 107 A2M C8 C Y N 108 A2M N7 N Y N 109 A2M C5 C Y N 110 A2M C6 C Y N 111 A2M N6 N N N 112 A2M N1 N Y N 113 A2M C2 C Y N 114 A2M N3 N Y N 115 A2M C4 C Y N 116 A2M HOP3 H N N 117 A2M "H5'" H N N 118 A2M "H5''" H N N 119 A2M "H4'" H N N 120 A2M "H3'" H N N 121 A2M "HO3'" H N N 122 A2M "H2'" H N N 123 A2M "H1'" H N N 124 A2M "HM'1" H N N 125 A2M "HM'2" H N N 126 A2M "HM'3" H N N 127 A2M H8 H N N 128 A2M H61 H N N 129 A2M H62 H N N 130 A2M H2 H N N 131 A2M OP2 O N N 132 A2M HOP2 H N N 133 ALA N N N N 134 ALA CA C N S 135 ALA C C N N 136 ALA O O N N 137 ALA CB C N N 138 ALA OXT O N N 139 ALA H H N N 140 ALA H2 H N N 141 ALA HA H N N 142 ALA HB1 H N N 143 ALA HB2 H N N 144 ALA HB3 H N N 145 ALA HXT H N N 146 ARG N N N N 147 ARG CA C N S 148 ARG C C N N 149 ARG O O N N 150 ARG CB C N N 151 ARG CG C N N 152 ARG CD C N N 153 ARG NE N N N 154 ARG CZ C N N 155 ARG NH1 N N N 156 ARG NH2 N N N 157 ARG OXT O N N 158 ARG H H N N 159 ARG H2 H N N 160 ARG HA H N N 161 ARG HB2 H N N 162 ARG HB3 H N N 163 ARG HG2 H N N 164 ARG HG3 H N N 165 ARG HD2 H N N 166 ARG HD3 H N N 167 ARG HE H N N 168 ARG HH11 H N N 169 ARG HH12 H N N 170 ARG HH21 H N N 171 ARG HH22 H N N 172 ARG HXT H N N 173 ASN N N N N 174 ASN CA C N S 175 ASN C C N N 176 ASN O O N N 177 ASN CB C N N 178 ASN CG C N N 179 ASN OD1 O N N 180 ASN ND2 N N N 181 ASN OXT O N N 182 ASN H H N N 183 ASN H2 H N N 184 ASN HA H N N 185 ASN HB2 H N N 186 ASN HB3 H N N 187 ASN HD21 H N N 188 ASN HD22 H N N 189 ASN HXT H N N 190 ASP N N N N 191 ASP CA C N S 192 ASP C C N N 193 ASP O O N N 194 ASP CB C N N 195 ASP CG C N N 196 ASP OD1 O N N 197 ASP OD2 O N N 198 ASP OXT O N N 199 ASP H H N N 200 ASP H2 H N N 201 ASP HA H N N 202 ASP HB2 H N N 203 ASP HB3 H N N 204 ASP HD2 H N N 205 ASP HXT H N N 206 CYS N N N N 207 CYS CA C N R 208 CYS C C N N 209 CYS O O N N 210 CYS CB C N N 211 CYS SG S N N 212 CYS OXT O N N 213 CYS H H N N 214 CYS H2 H N N 215 CYS HA H N N 216 CYS HB2 H N N 217 CYS HB3 H N N 218 CYS HG H N N 219 CYS HXT H N N 220 DA OP3 O N N 221 DA P P N N 222 DA OP1 O N N 223 DA OP2 O N N 224 DA "O5'" O N N 225 DA "C5'" C N N 226 DA "C4'" C N R 227 DA "O4'" O N N 228 DA "C3'" C N S 229 DA "O3'" O N N 230 DA "C2'" C N N 231 DA "C1'" C N R 232 DA N9 N Y N 233 DA C8 C Y N 234 DA N7 N Y N 235 DA C5 C Y N 236 DA C6 C Y N 237 DA N6 N N N 238 DA N1 N Y N 239 DA C2 C Y N 240 DA N3 N Y N 241 DA C4 C Y N 242 DA HOP3 H N N 243 DA HOP2 H N N 244 DA "H5'" H N N 245 DA "H5''" H N N 246 DA "H4'" H N N 247 DA "H3'" H N N 248 DA "HO3'" H N N 249 DA "H2'" H N N 250 DA "H2''" H N N 251 DA "H1'" H N N 252 DA H8 H N N 253 DA H61 H N N 254 DA H62 H N N 255 DA H2 H N N 256 DC OP3 O N N 257 DC P P N N 258 DC OP1 O N N 259 DC OP2 O N N 260 DC "O5'" O N N 261 DC "C5'" C N N 262 DC "C4'" C N R 263 DC "O4'" O N N 264 DC "C3'" C N S 265 DC "O3'" O N N 266 DC "C2'" C N N 267 DC "C1'" C N R 268 DC N1 N N N 269 DC C2 C N N 270 DC O2 O N N 271 DC N3 N N N 272 DC C4 C N N 273 DC N4 N N N 274 DC C5 C N N 275 DC C6 C N N 276 DC HOP3 H N N 277 DC HOP2 H N N 278 DC "H5'" H N N 279 DC "H5''" H N N 280 DC "H4'" H N N 281 DC "H3'" H N N 282 DC "HO3'" H N N 283 DC "H2'" H N N 284 DC "H2''" H N N 285 DC "H1'" H N N 286 DC H41 H N N 287 DC H42 H N N 288 DC H5 H N N 289 DC H6 H N N 290 DG OP3 O N N 291 DG P P N N 292 DG OP1 O N N 293 DG OP2 O N N 294 DG "O5'" O N N 295 DG "C5'" C N N 296 DG "C4'" C N R 297 DG "O4'" O N N 298 DG "C3'" C N S 299 DG "O3'" O N N 300 DG "C2'" C N N 301 DG "C1'" C N R 302 DG N9 N Y N 303 DG C8 C Y N 304 DG N7 N Y N 305 DG C5 C Y N 306 DG C6 C N N 307 DG O6 O N N 308 DG N1 N N N 309 DG C2 C N N 310 DG N2 N N N 311 DG N3 N N N 312 DG C4 C Y N 313 DG HOP3 H N N 314 DG HOP2 H N N 315 DG "H5'" H N N 316 DG "H5''" H N N 317 DG "H4'" H N N 318 DG "H3'" H N N 319 DG "HO3'" H N N 320 DG "H2'" H N N 321 DG "H2''" H N N 322 DG "H1'" H N N 323 DG H8 H N N 324 DG H1 H N N 325 DG H21 H N N 326 DG H22 H N N 327 DUZ P P N N 328 DUZ N1 N N N 329 DUZ C2 C N N 330 DUZ O2 O N N 331 DUZ N3 N N N 332 DUZ C4 C N N 333 DUZ O4 O N N 334 DUZ C5 C N N 335 DUZ C6 C N N 336 DUZ "C1'" C N R 337 DUZ "C2'" C N N 338 DUZ C21 C N N 339 DUZ O22 O N N 340 DUZ N23 N N N 341 DUZ C24 C N N 342 DUZ C25 C Y N 343 DUZ C26 C Y N 344 DUZ C27 C Y N 345 DUZ C28 C Y N 346 DUZ C29 C Y N 347 DUZ "C3'" C N S 348 DUZ "O3'" O N N 349 DUZ C30 C Y N 350 DUZ "C4'" C N R 351 DUZ "O4'" O N N 352 DUZ "C5'" C N N 353 DUZ "O5'" O N N 354 DUZ OP1 O N N 355 DUZ OP2 O N N 356 DUZ OP3 O N N 357 DUZ HN3 H N N 358 DUZ H6 H N N 359 DUZ "H1'" H N N 360 DUZ "H2'" H N N 361 DUZ "H2'A" H N N 362 DUZ HN23 H N N 363 DUZ H24 H N N 364 DUZ H24A H N N 365 DUZ H26 H N N 366 DUZ H27 H N N 367 DUZ H28 H N N 368 DUZ H29 H N N 369 DUZ "H3'" H N N 370 DUZ "HO3'" H N N 371 DUZ H30 H N N 372 DUZ "H4'" H N N 373 DUZ "H5'" H N N 374 DUZ "H5'A" H N N 375 DUZ HOP2 H N N 376 DUZ HOP3 H N N 377 GLN N N N N 378 GLN CA C N S 379 GLN C C N N 380 GLN O O N N 381 GLN CB C N N 382 GLN CG C N N 383 GLN CD C N N 384 GLN OE1 O N N 385 GLN NE2 N N N 386 GLN OXT O N N 387 GLN H H N N 388 GLN H2 H N N 389 GLN HA H N N 390 GLN HB2 H N N 391 GLN HB3 H N N 392 GLN HG2 H N N 393 GLN HG3 H N N 394 GLN HE21 H N N 395 GLN HE22 H N N 396 GLN HXT H N N 397 GLU N N N N 398 GLU CA C N S 399 GLU C C N N 400 GLU O O N N 401 GLU CB C N N 402 GLU CG C N N 403 GLU CD C N N 404 GLU OE1 O N N 405 GLU OE2 O N N 406 GLU OXT O N N 407 GLU H H N N 408 GLU H2 H N N 409 GLU HA H N N 410 GLU HB2 H N N 411 GLU HB3 H N N 412 GLU HG2 H N N 413 GLU HG3 H N N 414 GLU HE2 H N N 415 GLU HXT H N N 416 GLY N N N N 417 GLY CA C N N 418 GLY C C N N 419 GLY O O N N 420 GLY OXT O N N 421 GLY H H N N 422 GLY H2 H N N 423 GLY HA2 H N N 424 GLY HA3 H N N 425 GLY HXT H N N 426 HIS N N N N 427 HIS CA C N S 428 HIS C C N N 429 HIS O O N N 430 HIS CB C N N 431 HIS CG C Y N 432 HIS ND1 N Y N 433 HIS CD2 C Y N 434 HIS CE1 C Y N 435 HIS NE2 N Y N 436 HIS OXT O N N 437 HIS H H N N 438 HIS H2 H N N 439 HIS HA H N N 440 HIS HB2 H N N 441 HIS HB3 H N N 442 HIS HD1 H N N 443 HIS HD2 H N N 444 HIS HE1 H N N 445 HIS HE2 H N N 446 HIS HXT H N N 447 HOH O O N N 448 HOH H1 H N N 449 HOH H2 H N N 450 ILE N N N N 451 ILE CA C N S 452 ILE C C N N 453 ILE O O N N 454 ILE CB C N S 455 ILE CG1 C N N 456 ILE CG2 C N N 457 ILE CD1 C N N 458 ILE OXT O N N 459 ILE H H N N 460 ILE H2 H N N 461 ILE HA H N N 462 ILE HB H N N 463 ILE HG12 H N N 464 ILE HG13 H N N 465 ILE HG21 H N N 466 ILE HG22 H N N 467 ILE HG23 H N N 468 ILE HD11 H N N 469 ILE HD12 H N N 470 ILE HD13 H N N 471 ILE HXT H N N 472 LEU N N N N 473 LEU CA C N S 474 LEU C C N N 475 LEU O O N N 476 LEU CB C N N 477 LEU CG C N N 478 LEU CD1 C N N 479 LEU CD2 C N N 480 LEU OXT O N N 481 LEU H H N N 482 LEU H2 H N N 483 LEU HA H N N 484 LEU HB2 H N N 485 LEU HB3 H N N 486 LEU HG H N N 487 LEU HD11 H N N 488 LEU HD12 H N N 489 LEU HD13 H N N 490 LEU HD21 H N N 491 LEU HD22 H N N 492 LEU HD23 H N N 493 LEU HXT H N N 494 LYS N N N N 495 LYS CA C N S 496 LYS C C N N 497 LYS O O N N 498 LYS CB C N N 499 LYS CG C N N 500 LYS CD C N N 501 LYS CE C N N 502 LYS NZ N N N 503 LYS OXT O N N 504 LYS H H N N 505 LYS H2 H N N 506 LYS HA H N N 507 LYS HB2 H N N 508 LYS HB3 H N N 509 LYS HG2 H N N 510 LYS HG3 H N N 511 LYS HD2 H N N 512 LYS HD3 H N N 513 LYS HE2 H N N 514 LYS HE3 H N N 515 LYS HZ1 H N N 516 LYS HZ2 H N N 517 LYS HZ3 H N N 518 LYS HXT H N N 519 MET N N N N 520 MET CA C N S 521 MET C C N N 522 MET O O N N 523 MET CB C N N 524 MET CG C N N 525 MET SD S N N 526 MET CE C N N 527 MET OXT O N N 528 MET H H N N 529 MET H2 H N N 530 MET HA H N N 531 MET HB2 H N N 532 MET HB3 H N N 533 MET HG2 H N N 534 MET HG3 H N N 535 MET HE1 H N N 536 MET HE2 H N N 537 MET HE3 H N N 538 MET HXT H N N 539 MG MG MG N N 540 NA NA NA N N 541 PE6 C3 C N N 542 PE6 O2 O N N 543 PE6 P1 P N N 544 PE6 OP1 O N N 545 PE6 OP2 O N N 546 PE6 C4 C N N 547 PE6 O5 O N N 548 PE6 C6 C N N 549 PE6 C7 C N N 550 PE6 O8 O N N 551 PE6 C9 C N N 552 PE6 C10 C N N 553 PE6 O11 O N N 554 PE6 O20 O N N 555 PE6 C19 C N N 556 PE6 C18 C N N 557 PE6 O17 O N N 558 PE6 C16 C N N 559 PE6 C15 C N N 560 PE6 O14 O N N 561 PE6 C13 C N N 562 PE6 C12 C N N 563 PE6 OP3 O N N 564 PE6 H31 H N N 565 PE6 H32 H N N 566 PE6 HOP2 H N N 567 PE6 H41 H N N 568 PE6 H42 H N N 569 PE6 H61 H N N 570 PE6 H62 H N N 571 PE6 H71 H N N 572 PE6 H72 H N N 573 PE6 H91 H N N 574 PE6 H92 H N N 575 PE6 H101 H N N 576 PE6 H102 H N N 577 PE6 H20 H N N 578 PE6 H191 H N N 579 PE6 H192 H N N 580 PE6 H181 H N N 581 PE6 H182 H N N 582 PE6 H161 H N N 583 PE6 H162 H N N 584 PE6 H151 H N N 585 PE6 H152 H N N 586 PE6 H131 H N N 587 PE6 H132 H N N 588 PE6 H121 H N N 589 PE6 H122 H N N 590 PE6 HOP3 H N N 591 PHE N N N N 592 PHE CA C N S 593 PHE C C N N 594 PHE O O N N 595 PHE CB C N N 596 PHE CG C Y N 597 PHE CD1 C Y N 598 PHE CD2 C Y N 599 PHE CE1 C Y N 600 PHE CE2 C Y N 601 PHE CZ C Y N 602 PHE OXT O N N 603 PHE H H N N 604 PHE H2 H N N 605 PHE HA H N N 606 PHE HB2 H N N 607 PHE HB3 H N N 608 PHE HD1 H N N 609 PHE HD2 H N N 610 PHE HE1 H N N 611 PHE HE2 H N N 612 PHE HZ H N N 613 PHE HXT H N N 614 PRO N N N N 615 PRO CA C N S 616 PRO C C N N 617 PRO O O N N 618 PRO CB C N N 619 PRO CG C N N 620 PRO CD C N N 621 PRO OXT O N N 622 PRO H H N N 623 PRO HA H N N 624 PRO HB2 H N N 625 PRO HB3 H N N 626 PRO HG2 H N N 627 PRO HG3 H N N 628 PRO HD2 H N N 629 PRO HD3 H N N 630 PRO HXT H N N 631 SER N N N N 632 SER CA C N S 633 SER C C N N 634 SER O O N N 635 SER CB C N N 636 SER OG O N N 637 SER OXT O N N 638 SER H H N N 639 SER H2 H N N 640 SER HA H N N 641 SER HB2 H N N 642 SER HB3 H N N 643 SER HG H N N 644 SER HXT H N N 645 THR N N N N 646 THR CA C N S 647 THR C C N N 648 THR O O N N 649 THR CB C N R 650 THR OG1 O N N 651 THR CG2 C N N 652 THR OXT O N N 653 THR H H N N 654 THR H2 H N N 655 THR HA H N N 656 THR HB H N N 657 THR HG1 H N N 658 THR HG21 H N N 659 THR HG22 H N N 660 THR HG23 H N N 661 THR HXT H N N 662 TRP N N N N 663 TRP CA C N S 664 TRP C C N N 665 TRP O O N N 666 TRP CB C N N 667 TRP CG C Y N 668 TRP CD1 C Y N 669 TRP CD2 C Y N 670 TRP NE1 N Y N 671 TRP CE2 C Y N 672 TRP CE3 C Y N 673 TRP CZ2 C Y N 674 TRP CZ3 C Y N 675 TRP CH2 C Y N 676 TRP OXT O N N 677 TRP H H N N 678 TRP H2 H N N 679 TRP HA H N N 680 TRP HB2 H N N 681 TRP HB3 H N N 682 TRP HD1 H N N 683 TRP HE1 H N N 684 TRP HE3 H N N 685 TRP HZ2 H N N 686 TRP HZ3 H N N 687 TRP HH2 H N N 688 TRP HXT H N N 689 UBI P P N N 690 UBI N1 N N N 691 UBI C2 C N N 692 UBI O2 O N N 693 UBI N3 N N N 694 UBI C4 C N N 695 UBI O4 O N N 696 UBI C5 C N N 697 UBI C6 C N N 698 UBI "C1'" C N R 699 UBI "C2'" C N N 700 UBI C21 C N N 701 UBI O22 O N N 702 UBI N23 N N N 703 UBI C24 C N N 704 UBI C25 C N N 705 UBI C26 C N N 706 UBI C27 C N N 707 UBI "C3'" C N S 708 UBI "O3'" O N N 709 UBI "C4'" C N R 710 UBI "O4'" O N N 711 UBI "C5'" C N N 712 UBI "O5'" O N N 713 UBI OP1 O N N 714 UBI OP2 O N N 715 UBI OP3 O N N 716 UBI HN3 H N N 717 UBI H6 H N N 718 UBI "H1'" H N N 719 UBI "H2'" H N N 720 UBI "H2'A" H N N 721 UBI HN23 H N N 722 UBI H24 H N N 723 UBI H24A H N N 724 UBI H25 H N N 725 UBI H26 H N N 726 UBI H26A H N N 727 UBI H26B H N N 728 UBI H27 H N N 729 UBI H27A H N N 730 UBI H27B H N N 731 UBI "H3'" H N N 732 UBI "HO3'" H N N 733 UBI "H4'" H N N 734 UBI "H5'" H N N 735 UBI "H5'A" H N N 736 UBI HOP2 H N N 737 UBI HOP3 H N N 738 UPE P P N N 739 UPE N1 N N N 740 UPE C2 C N N 741 UPE O2 O N N 742 UPE N3 N N N 743 UPE C4 C N N 744 UPE O4 O N N 745 UPE C5 C N N 746 UPE C6 C N N 747 UPE "C1'" C N R 748 UPE "C2'" C N N 749 UPE C21 C N N 750 UPE O22 O N N 751 UPE N23 N N N 752 UPE C24 C N N 753 UPE C25 C N N 754 UPE C26 C Y N 755 UPE C27 C Y N 756 UPE C28 C Y N 757 UPE C29 C Y N 758 UPE "C3'" C N S 759 UPE "O3'" O N N 760 UPE C30 C Y N 761 UPE C31 C Y N 762 UPE "C4'" C N R 763 UPE "O4'" O N N 764 UPE "C5'" C N N 765 UPE "O5'" O N N 766 UPE OP1 O N N 767 UPE OP2 O N N 768 UPE OP3 O N N 769 UPE HN3 H N N 770 UPE H6 H N N 771 UPE "H1'" H N N 772 UPE "H2'" H N N 773 UPE "H2'A" H N N 774 UPE HN23 H N N 775 UPE H24 H N N 776 UPE H24A H N N 777 UPE H25 H N N 778 UPE H25A H N N 779 UPE H27 H N N 780 UPE H28 H N N 781 UPE H29 H N N 782 UPE "H3'" H N N 783 UPE "HO3'" H N N 784 UPE H30 H N N 785 UPE H31 H N N 786 UPE "H4'" H N N 787 UPE "H5'" H N N 788 UPE "H5'A" H N N 789 UPE HOP2 H N N 790 UPE HOP3 H N N 791 VAL N N N N 792 VAL CA C N S 793 VAL C C N N 794 VAL O O N N 795 VAL CB C N N 796 VAL CG1 C N N 797 VAL CG2 C N N 798 VAL OXT O N N 799 VAL H H N N 800 VAL H2 H N N 801 VAL HA H N N 802 VAL HB H N N 803 VAL HG11 H N N 804 VAL HG12 H N N 805 VAL HG13 H N N 806 VAL HG21 H N N 807 VAL HG22 H N N 808 VAL HG23 H N N 809 VAL HXT H N N 810 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 18M OP2 P doub N N 1 18M "O5'" P sing N N 2 18M P OP3 sing N N 3 18M P OP1 sing N N 4 18M "O5'" "C5'" sing N N 5 18M "C4'" "C5'" sing N N 6 18M "C5'" "H5'" sing N N 7 18M "C5'" "H5'A" sing N N 8 18M "C3'" "C4'" sing N N 9 18M "O4'" "C4'" sing N N 10 18M "C4'" "H4'" sing N N 11 18M "C1'" "O4'" sing N N 12 18M "C2'" "C3'" sing N N 13 18M "C3'" "O3'" sing N N 14 18M "C3'" "H3'" sing N N 15 18M "O3'" P1 sing N N 16 18M "O2'" "C2'" sing N N 17 18M "C2'" "C1'" sing N N 18 18M "C2'" "H2'" sing N N 19 18M "O2'" CM2 sing N N 20 18M N9 "C1'" sing N N 21 18M "C1'" "H1'" sing N N 22 18M C8 N9 sing Y N 23 18M C4 N9 sing Y N 24 18M N7 C8 doub Y N 25 18M C8 H8 sing N N 26 18M N7 C5 sing Y N 27 18M C6 C5 sing N N 28 18M C5 C4 doub Y N 29 18M O6 C6 doub N N 30 18M C6 N1 sing N N 31 18M N1 C2 doub N N 32 18M C2 N3 sing N N 33 18M C2 N2 sing N N 34 18M N2 HN2 sing N N 35 18M N2 HN2A sing N N 36 18M C4 N3 sing N N 37 18M N3 HN3 sing N N 38 18M O12 P1 doub N N 39 18M P1 O13 sing N N 40 18M P1 O11 sing N N 41 18M O11 HO11 sing N N 42 18M O13 HO13 sing N N 43 18M CM2 HM2 sing N N 44 18M CM2 HM2A sing N N 45 18M CM2 HM2B sing N N 46 18M OP1 HOP1 sing N N 47 18M OP3 HOP3 sing N N 48 18Q OP2 P doub N N 49 18Q "O5'" P sing N N 50 18Q P OP3 sing N N 51 18Q P OP1 sing N N 52 18Q "C1'" N1 sing N N 53 18Q N1 C2 sing N N 54 18Q N1 C6 sing N N 55 18Q O2 C2 doub N N 56 18Q C2 N3 sing N N 57 18Q N3 C4 sing N N 58 18Q N3 HN3 sing N N 59 18Q C5 C4 sing N N 60 18Q C4 O4 doub N N 61 18Q C6 C5 doub N N 62 18Q C5 C21 sing N N 63 18Q C6 H6 sing N N 64 18Q "C2'" "C1'" sing N N 65 18Q "O4'" "C1'" sing N N 66 18Q "C1'" "H1'" sing N N 67 18Q "C3'" "C2'" sing N N 68 18Q "C2'" "H2'" sing N N 69 18Q "C2'" "H2'A" sing N N 70 18Q O22 C21 doub N N 71 18Q C21 N23 sing N N 72 18Q N23 C24 sing N N 73 18Q N23 HN23 sing N N 74 18Q C24 C25 sing N N 75 18Q C24 H24 sing N N 76 18Q C24 H24A sing N N 77 18Q S26 C25 sing Y N 78 18Q C25 C29 doub Y N 79 18Q S26 C27 sing Y N 80 18Q C27 C28 doub Y N 81 18Q C27 H27 sing N N 82 18Q C28 C29 sing Y N 83 18Q C28 H28 sing N N 84 18Q C29 H29 sing N N 85 18Q "O3'" "C3'" sing N N 86 18Q "C3'" "C4'" sing N N 87 18Q "C3'" "H3'" sing N N 88 18Q "O3'" "HO3'" sing N N 89 18Q "C4'" "C5'" sing N N 90 18Q "C4'" "O4'" sing N N 91 18Q "C4'" "H4'" sing N N 92 18Q "C5'" "O5'" sing N N 93 18Q "C5'" "H5'" sing N N 94 18Q "C5'" "H5'A" sing N N 95 18Q OP1 HOP1 sing N N 96 18Q OP3 HOP3 sing N N 97 A2M P OP1 doub N N 98 A2M P OP3 sing N N 99 A2M P "O5'" sing N N 100 A2M OP3 HOP3 sing N N 101 A2M "O5'" "C5'" sing N N 102 A2M "C5'" "C4'" sing N N 103 A2M "C5'" "H5'" sing N N 104 A2M "C5'" "H5''" sing N N 105 A2M "C4'" "O4'" sing N N 106 A2M "C4'" "C3'" sing N N 107 A2M "C4'" "H4'" sing N N 108 A2M "O4'" "C1'" sing N N 109 A2M "C3'" "O3'" sing N N 110 A2M "C3'" "C2'" sing N N 111 A2M "C3'" "H3'" sing N N 112 A2M "O3'" "HO3'" sing N N 113 A2M "C2'" "O2'" sing N N 114 A2M "C2'" "C1'" sing N N 115 A2M "C2'" "H2'" sing N N 116 A2M "O2'" "CM'" sing N N 117 A2M "C1'" N9 sing N N 118 A2M "C1'" "H1'" sing N N 119 A2M "CM'" "HM'1" sing N N 120 A2M "CM'" "HM'2" sing N N 121 A2M "CM'" "HM'3" sing N N 122 A2M N9 C8 sing Y N 123 A2M N9 C4 sing Y N 124 A2M C8 N7 doub Y N 125 A2M C8 H8 sing N N 126 A2M N7 C5 sing Y N 127 A2M C5 C6 sing Y N 128 A2M C5 C4 doub Y N 129 A2M C6 N6 sing N N 130 A2M C6 N1 doub Y N 131 A2M N6 H61 sing N N 132 A2M N6 H62 sing N N 133 A2M N1 C2 sing Y N 134 A2M C2 N3 doub Y N 135 A2M C2 H2 sing N N 136 A2M N3 C4 sing Y N 137 A2M P OP2 sing N N 138 A2M OP2 HOP2 sing N N 139 ALA N CA sing N N 140 ALA N H sing N N 141 ALA N H2 sing N N 142 ALA CA C sing N N 143 ALA CA CB sing N N 144 ALA CA HA sing N N 145 ALA C O doub N N 146 ALA C OXT sing N N 147 ALA CB HB1 sing N N 148 ALA CB HB2 sing N N 149 ALA CB HB3 sing N N 150 ALA OXT HXT sing N N 151 ARG N CA sing N N 152 ARG N H sing N N 153 ARG N H2 sing N N 154 ARG CA C sing N N 155 ARG CA CB sing N N 156 ARG CA HA sing N N 157 ARG C O doub N N 158 ARG C OXT sing N N 159 ARG CB CG sing N N 160 ARG CB HB2 sing N N 161 ARG CB HB3 sing N N 162 ARG CG CD sing N N 163 ARG CG HG2 sing N N 164 ARG CG HG3 sing N N 165 ARG CD NE sing N N 166 ARG CD HD2 sing N N 167 ARG CD HD3 sing N N 168 ARG NE CZ sing N N 169 ARG NE HE sing N N 170 ARG CZ NH1 sing N N 171 ARG CZ NH2 doub N N 172 ARG NH1 HH11 sing N N 173 ARG NH1 HH12 sing N N 174 ARG NH2 HH21 sing N N 175 ARG NH2 HH22 sing N N 176 ARG OXT HXT sing N N 177 ASN N CA sing N N 178 ASN N H sing N N 179 ASN N H2 sing N N 180 ASN CA C sing N N 181 ASN CA CB sing N N 182 ASN CA HA sing N N 183 ASN C O doub N N 184 ASN C OXT sing N N 185 ASN CB CG sing N N 186 ASN CB HB2 sing N N 187 ASN CB HB3 sing N N 188 ASN CG OD1 doub N N 189 ASN CG ND2 sing N N 190 ASN ND2 HD21 sing N N 191 ASN ND2 HD22 sing N N 192 ASN OXT HXT sing N N 193 ASP N CA sing N N 194 ASP N H sing N N 195 ASP N H2 sing N N 196 ASP CA C sing N N 197 ASP CA CB sing N N 198 ASP CA HA sing N N 199 ASP C O doub N N 200 ASP C OXT sing N N 201 ASP CB CG sing N N 202 ASP CB HB2 sing N N 203 ASP CB HB3 sing N N 204 ASP CG OD1 doub N N 205 ASP CG OD2 sing N N 206 ASP OD2 HD2 sing N N 207 ASP OXT HXT sing N N 208 CYS N CA sing N N 209 CYS N H sing N N 210 CYS N H2 sing N N 211 CYS CA C sing N N 212 CYS CA CB sing N N 213 CYS CA HA sing N N 214 CYS C O doub N N 215 CYS C OXT sing N N 216 CYS CB SG sing N N 217 CYS CB HB2 sing N N 218 CYS CB HB3 sing N N 219 CYS SG HG sing N N 220 CYS OXT HXT sing N N 221 DA OP3 P sing N N 222 DA OP3 HOP3 sing N N 223 DA P OP1 doub N N 224 DA P OP2 sing N N 225 DA P "O5'" sing N N 226 DA OP2 HOP2 sing N N 227 DA "O5'" "C5'" sing N N 228 DA "C5'" "C4'" sing N N 229 DA "C5'" "H5'" sing N N 230 DA "C5'" "H5''" sing N N 231 DA "C4'" "O4'" sing N N 232 DA "C4'" "C3'" sing N N 233 DA "C4'" "H4'" sing N N 234 DA "O4'" "C1'" sing N N 235 DA "C3'" "O3'" sing N N 236 DA "C3'" "C2'" sing N N 237 DA "C3'" "H3'" sing N N 238 DA "O3'" "HO3'" sing N N 239 DA "C2'" "C1'" sing N N 240 DA "C2'" "H2'" sing N N 241 DA "C2'" "H2''" sing N N 242 DA "C1'" N9 sing N N 243 DA "C1'" "H1'" sing N N 244 DA N9 C8 sing Y N 245 DA N9 C4 sing Y N 246 DA C8 N7 doub Y N 247 DA C8 H8 sing N N 248 DA N7 C5 sing Y N 249 DA C5 C6 sing Y N 250 DA C5 C4 doub Y N 251 DA C6 N6 sing N N 252 DA C6 N1 doub Y N 253 DA N6 H61 sing N N 254 DA N6 H62 sing N N 255 DA N1 C2 sing Y N 256 DA C2 N3 doub Y N 257 DA C2 H2 sing N N 258 DA N3 C4 sing Y N 259 DC OP3 P sing N N 260 DC OP3 HOP3 sing N N 261 DC P OP1 doub N N 262 DC P OP2 sing N N 263 DC P "O5'" sing N N 264 DC OP2 HOP2 sing N N 265 DC "O5'" "C5'" sing N N 266 DC "C5'" "C4'" sing N N 267 DC "C5'" "H5'" sing N N 268 DC "C5'" "H5''" sing N N 269 DC "C4'" "O4'" sing N N 270 DC "C4'" "C3'" sing N N 271 DC "C4'" "H4'" sing N N 272 DC "O4'" "C1'" sing N N 273 DC "C3'" "O3'" sing N N 274 DC "C3'" "C2'" sing N N 275 DC "C3'" "H3'" sing N N 276 DC "O3'" "HO3'" sing N N 277 DC "C2'" "C1'" sing N N 278 DC "C2'" "H2'" sing N N 279 DC "C2'" "H2''" sing N N 280 DC "C1'" N1 sing N N 281 DC "C1'" "H1'" sing N N 282 DC N1 C2 sing N N 283 DC N1 C6 sing N N 284 DC C2 O2 doub N N 285 DC C2 N3 sing N N 286 DC N3 C4 doub N N 287 DC C4 N4 sing N N 288 DC C4 C5 sing N N 289 DC N4 H41 sing N N 290 DC N4 H42 sing N N 291 DC C5 C6 doub N N 292 DC C5 H5 sing N N 293 DC C6 H6 sing N N 294 DG OP3 P sing N N 295 DG OP3 HOP3 sing N N 296 DG P OP1 doub N N 297 DG P OP2 sing N N 298 DG P "O5'" sing N N 299 DG OP2 HOP2 sing N N 300 DG "O5'" "C5'" sing N N 301 DG "C5'" "C4'" sing N N 302 DG "C5'" "H5'" sing N N 303 DG "C5'" "H5''" sing N N 304 DG "C4'" "O4'" sing N N 305 DG "C4'" "C3'" sing N N 306 DG "C4'" "H4'" sing N N 307 DG "O4'" "C1'" sing N N 308 DG "C3'" "O3'" sing N N 309 DG "C3'" "C2'" sing N N 310 DG "C3'" "H3'" sing N N 311 DG "O3'" "HO3'" sing N N 312 DG "C2'" "C1'" sing N N 313 DG "C2'" "H2'" sing N N 314 DG "C2'" "H2''" sing N N 315 DG "C1'" N9 sing N N 316 DG "C1'" "H1'" sing N N 317 DG N9 C8 sing Y N 318 DG N9 C4 sing Y N 319 DG C8 N7 doub Y N 320 DG C8 H8 sing N N 321 DG N7 C5 sing Y N 322 DG C5 C6 sing N N 323 DG C5 C4 doub Y N 324 DG C6 O6 doub N N 325 DG C6 N1 sing N N 326 DG N1 C2 sing N N 327 DG N1 H1 sing N N 328 DG C2 N2 sing N N 329 DG C2 N3 doub N N 330 DG N2 H21 sing N N 331 DG N2 H22 sing N N 332 DG N3 C4 sing N N 333 DUZ "O5'" P sing N N 334 DUZ OP1 P doub N N 335 DUZ P OP2 sing N N 336 DUZ P OP3 sing N N 337 DUZ C2 N1 sing N N 338 DUZ "C1'" N1 sing N N 339 DUZ N1 C6 sing N N 340 DUZ O2 C2 doub N N 341 DUZ C2 N3 sing N N 342 DUZ N3 C4 sing N N 343 DUZ N3 HN3 sing N N 344 DUZ C4 O4 doub N N 345 DUZ C4 C5 sing N N 346 DUZ C6 C5 doub N N 347 DUZ C5 C21 sing N N 348 DUZ C6 H6 sing N N 349 DUZ "C1'" "C2'" sing N N 350 DUZ "C1'" "O4'" sing N N 351 DUZ "C1'" "H1'" sing N N 352 DUZ "C2'" "C3'" sing N N 353 DUZ "C2'" "H2'" sing N N 354 DUZ "C2'" "H2'A" sing N N 355 DUZ C21 N23 sing N N 356 DUZ C21 O22 doub N N 357 DUZ N23 C24 sing N N 358 DUZ N23 HN23 sing N N 359 DUZ C24 C25 sing N N 360 DUZ C24 H24 sing N N 361 DUZ C24 H24A sing N N 362 DUZ C30 C25 doub Y N 363 DUZ C25 C26 sing Y N 364 DUZ C26 C27 doub Y N 365 DUZ C26 H26 sing N N 366 DUZ C28 C27 sing Y N 367 DUZ C27 H27 sing N N 368 DUZ C29 C28 doub Y N 369 DUZ C28 H28 sing N N 370 DUZ C30 C29 sing Y N 371 DUZ C29 H29 sing N N 372 DUZ "O3'" "C3'" sing N N 373 DUZ "C3'" "C4'" sing N N 374 DUZ "C3'" "H3'" sing N N 375 DUZ "O3'" "HO3'" sing N N 376 DUZ C30 H30 sing N N 377 DUZ "O4'" "C4'" sing N N 378 DUZ "C4'" "C5'" sing N N 379 DUZ "C4'" "H4'" sing N N 380 DUZ "C5'" "O5'" sing N N 381 DUZ "C5'" "H5'" sing N N 382 DUZ "C5'" "H5'A" sing N N 383 DUZ OP2 HOP2 sing N N 384 DUZ OP3 HOP3 sing N N 385 GLN N CA sing N N 386 GLN N H sing N N 387 GLN N H2 sing N N 388 GLN CA C sing N N 389 GLN CA CB sing N N 390 GLN CA HA sing N N 391 GLN C O doub N N 392 GLN C OXT sing N N 393 GLN CB CG sing N N 394 GLN CB HB2 sing N N 395 GLN CB HB3 sing N N 396 GLN CG CD sing N N 397 GLN CG HG2 sing N N 398 GLN CG HG3 sing N N 399 GLN CD OE1 doub N N 400 GLN CD NE2 sing N N 401 GLN NE2 HE21 sing N N 402 GLN NE2 HE22 sing N N 403 GLN OXT HXT sing N N 404 GLU N CA sing N N 405 GLU N H sing N N 406 GLU N H2 sing N N 407 GLU CA C sing N N 408 GLU CA CB sing N N 409 GLU CA HA sing N N 410 GLU C O doub N N 411 GLU C OXT sing N N 412 GLU CB CG sing N N 413 GLU CB HB2 sing N N 414 GLU CB HB3 sing N N 415 GLU CG CD sing N N 416 GLU CG HG2 sing N N 417 GLU CG HG3 sing N N 418 GLU CD OE1 doub N N 419 GLU CD OE2 sing N N 420 GLU OE2 HE2 sing N N 421 GLU OXT HXT sing N N 422 GLY N CA sing N N 423 GLY N H sing N N 424 GLY N H2 sing N N 425 GLY CA C sing N N 426 GLY CA HA2 sing N N 427 GLY CA HA3 sing N N 428 GLY C O doub N N 429 GLY C OXT sing N N 430 GLY OXT HXT sing N N 431 HIS N CA sing N N 432 HIS N H sing N N 433 HIS N H2 sing N N 434 HIS CA C sing N N 435 HIS CA CB sing N N 436 HIS CA HA sing N N 437 HIS C O doub N N 438 HIS C OXT sing N N 439 HIS CB CG sing N N 440 HIS CB HB2 sing N N 441 HIS CB HB3 sing N N 442 HIS CG ND1 sing Y N 443 HIS CG CD2 doub Y N 444 HIS ND1 CE1 doub Y N 445 HIS ND1 HD1 sing N N 446 HIS CD2 NE2 sing Y N 447 HIS CD2 HD2 sing N N 448 HIS CE1 NE2 sing Y N 449 HIS CE1 HE1 sing N N 450 HIS NE2 HE2 sing N N 451 HIS OXT HXT sing N N 452 HOH O H1 sing N N 453 HOH O H2 sing N N 454 ILE N CA sing N N 455 ILE N H sing N N 456 ILE N H2 sing N N 457 ILE CA C sing N N 458 ILE CA CB sing N N 459 ILE CA HA sing N N 460 ILE C O doub N N 461 ILE C OXT sing N N 462 ILE CB CG1 sing N N 463 ILE CB CG2 sing N N 464 ILE CB HB sing N N 465 ILE CG1 CD1 sing N N 466 ILE CG1 HG12 sing N N 467 ILE CG1 HG13 sing N N 468 ILE CG2 HG21 sing N N 469 ILE CG2 HG22 sing N N 470 ILE CG2 HG23 sing N N 471 ILE CD1 HD11 sing N N 472 ILE CD1 HD12 sing N N 473 ILE CD1 HD13 sing N N 474 ILE OXT HXT sing N N 475 LEU N CA sing N N 476 LEU N H sing N N 477 LEU N H2 sing N N 478 LEU CA C sing N N 479 LEU CA CB sing N N 480 LEU CA HA sing N N 481 LEU C O doub N N 482 LEU C OXT sing N N 483 LEU CB CG sing N N 484 LEU CB HB2 sing N N 485 LEU CB HB3 sing N N 486 LEU CG CD1 sing N N 487 LEU CG CD2 sing N N 488 LEU CG HG sing N N 489 LEU CD1 HD11 sing N N 490 LEU CD1 HD12 sing N N 491 LEU CD1 HD13 sing N N 492 LEU CD2 HD21 sing N N 493 LEU CD2 HD22 sing N N 494 LEU CD2 HD23 sing N N 495 LEU OXT HXT sing N N 496 LYS N CA sing N N 497 LYS N H sing N N 498 LYS N H2 sing N N 499 LYS CA C sing N N 500 LYS CA CB sing N N 501 LYS CA HA sing N N 502 LYS C O doub N N 503 LYS C OXT sing N N 504 LYS CB CG sing N N 505 LYS CB HB2 sing N N 506 LYS CB HB3 sing N N 507 LYS CG CD sing N N 508 LYS CG HG2 sing N N 509 LYS CG HG3 sing N N 510 LYS CD CE sing N N 511 LYS CD HD2 sing N N 512 LYS CD HD3 sing N N 513 LYS CE NZ sing N N 514 LYS CE HE2 sing N N 515 LYS CE HE3 sing N N 516 LYS NZ HZ1 sing N N 517 LYS NZ HZ2 sing N N 518 LYS NZ HZ3 sing N N 519 LYS OXT HXT sing N N 520 MET N CA sing N N 521 MET N H sing N N 522 MET N H2 sing N N 523 MET CA C sing N N 524 MET CA CB sing N N 525 MET CA HA sing N N 526 MET C O doub N N 527 MET C OXT sing N N 528 MET CB CG sing N N 529 MET CB HB2 sing N N 530 MET CB HB3 sing N N 531 MET CG SD sing N N 532 MET CG HG2 sing N N 533 MET CG HG3 sing N N 534 MET SD CE sing N N 535 MET CE HE1 sing N N 536 MET CE HE2 sing N N 537 MET CE HE3 sing N N 538 MET OXT HXT sing N N 539 PE6 C3 O2 sing N N 540 PE6 C3 C4 sing N N 541 PE6 C3 H31 sing N N 542 PE6 C3 H32 sing N N 543 PE6 O2 P1 sing N N 544 PE6 P1 OP1 doub N N 545 PE6 P1 OP2 sing N N 546 PE6 P1 OP3 sing N N 547 PE6 OP2 HOP2 sing N N 548 PE6 C4 O5 sing N N 549 PE6 C4 H41 sing N N 550 PE6 C4 H42 sing N N 551 PE6 O5 C6 sing N N 552 PE6 C6 C7 sing N N 553 PE6 C6 H61 sing N N 554 PE6 C6 H62 sing N N 555 PE6 C7 O8 sing N N 556 PE6 C7 H71 sing N N 557 PE6 C7 H72 sing N N 558 PE6 O8 C9 sing N N 559 PE6 C9 C10 sing N N 560 PE6 C9 H91 sing N N 561 PE6 C9 H92 sing N N 562 PE6 C10 O11 sing N N 563 PE6 C10 H101 sing N N 564 PE6 C10 H102 sing N N 565 PE6 O11 C12 sing N N 566 PE6 O20 C19 sing N N 567 PE6 O20 H20 sing N N 568 PE6 C19 C18 sing N N 569 PE6 C19 H191 sing N N 570 PE6 C19 H192 sing N N 571 PE6 C18 O17 sing N N 572 PE6 C18 H181 sing N N 573 PE6 C18 H182 sing N N 574 PE6 O17 C16 sing N N 575 PE6 C16 C15 sing N N 576 PE6 C16 H161 sing N N 577 PE6 C16 H162 sing N N 578 PE6 C15 O14 sing N N 579 PE6 C15 H151 sing N N 580 PE6 C15 H152 sing N N 581 PE6 O14 C13 sing N N 582 PE6 C13 C12 sing N N 583 PE6 C13 H131 sing N N 584 PE6 C13 H132 sing N N 585 PE6 C12 H121 sing N N 586 PE6 C12 H122 sing N N 587 PE6 OP3 HOP3 sing N N 588 PHE N CA sing N N 589 PHE N H sing N N 590 PHE N H2 sing N N 591 PHE CA C sing N N 592 PHE CA CB sing N N 593 PHE CA HA sing N N 594 PHE C O doub N N 595 PHE C OXT sing N N 596 PHE CB CG sing N N 597 PHE CB HB2 sing N N 598 PHE CB HB3 sing N N 599 PHE CG CD1 doub Y N 600 PHE CG CD2 sing Y N 601 PHE CD1 CE1 sing Y N 602 PHE CD1 HD1 sing N N 603 PHE CD2 CE2 doub Y N 604 PHE CD2 HD2 sing N N 605 PHE CE1 CZ doub Y N 606 PHE CE1 HE1 sing N N 607 PHE CE2 CZ sing Y N 608 PHE CE2 HE2 sing N N 609 PHE CZ HZ sing N N 610 PHE OXT HXT sing N N 611 PRO N CA sing N N 612 PRO N CD sing N N 613 PRO N H sing N N 614 PRO CA C sing N N 615 PRO CA CB sing N N 616 PRO CA HA sing N N 617 PRO C O doub N N 618 PRO C OXT sing N N 619 PRO CB CG sing N N 620 PRO CB HB2 sing N N 621 PRO CB HB3 sing N N 622 PRO CG CD sing N N 623 PRO CG HG2 sing N N 624 PRO CG HG3 sing N N 625 PRO CD HD2 sing N N 626 PRO CD HD3 sing N N 627 PRO OXT HXT sing N N 628 SER N CA sing N N 629 SER N H sing N N 630 SER N H2 sing N N 631 SER CA C sing N N 632 SER CA CB sing N N 633 SER CA HA sing N N 634 SER C O doub N N 635 SER C OXT sing N N 636 SER CB OG sing N N 637 SER CB HB2 sing N N 638 SER CB HB3 sing N N 639 SER OG HG sing N N 640 SER OXT HXT sing N N 641 THR N CA sing N N 642 THR N H sing N N 643 THR N H2 sing N N 644 THR CA C sing N N 645 THR CA CB sing N N 646 THR CA HA sing N N 647 THR C O doub N N 648 THR C OXT sing N N 649 THR CB OG1 sing N N 650 THR CB CG2 sing N N 651 THR CB HB sing N N 652 THR OG1 HG1 sing N N 653 THR CG2 HG21 sing N N 654 THR CG2 HG22 sing N N 655 THR CG2 HG23 sing N N 656 THR OXT HXT sing N N 657 TRP N CA sing N N 658 TRP N H sing N N 659 TRP N H2 sing N N 660 TRP CA C sing N N 661 TRP CA CB sing N N 662 TRP CA HA sing N N 663 TRP C O doub N N 664 TRP C OXT sing N N 665 TRP CB CG sing N N 666 TRP CB HB2 sing N N 667 TRP CB HB3 sing N N 668 TRP CG CD1 doub Y N 669 TRP CG CD2 sing Y N 670 TRP CD1 NE1 sing Y N 671 TRP CD1 HD1 sing N N 672 TRP CD2 CE2 doub Y N 673 TRP CD2 CE3 sing Y N 674 TRP NE1 CE2 sing Y N 675 TRP NE1 HE1 sing N N 676 TRP CE2 CZ2 sing Y N 677 TRP CE3 CZ3 doub Y N 678 TRP CE3 HE3 sing N N 679 TRP CZ2 CH2 doub Y N 680 TRP CZ2 HZ2 sing N N 681 TRP CZ3 CH2 sing Y N 682 TRP CZ3 HZ3 sing N N 683 TRP CH2 HH2 sing N N 684 TRP OXT HXT sing N N 685 UBI "O5'" P sing N N 686 UBI OP1 P doub N N 687 UBI P OP2 sing N N 688 UBI P OP3 sing N N 689 UBI "C1'" N1 sing N N 690 UBI N1 C2 sing N N 691 UBI N1 C6 sing N N 692 UBI O2 C2 doub N N 693 UBI C2 N3 sing N N 694 UBI N3 C4 sing N N 695 UBI N3 HN3 sing N N 696 UBI C5 C4 sing N N 697 UBI C4 O4 doub N N 698 UBI C6 C5 doub N N 699 UBI C5 C21 sing N N 700 UBI C6 H6 sing N N 701 UBI "C2'" "C1'" sing N N 702 UBI "O4'" "C1'" sing N N 703 UBI "C1'" "H1'" sing N N 704 UBI "C3'" "C2'" sing N N 705 UBI "C2'" "H2'" sing N N 706 UBI "C2'" "H2'A" sing N N 707 UBI O22 C21 doub N N 708 UBI C21 N23 sing N N 709 UBI N23 C24 sing N N 710 UBI N23 HN23 sing N N 711 UBI C24 C25 sing N N 712 UBI C24 H24 sing N N 713 UBI C24 H24A sing N N 714 UBI C26 C25 sing N N 715 UBI C25 C27 sing N N 716 UBI C25 H25 sing N N 717 UBI C26 H26 sing N N 718 UBI C26 H26A sing N N 719 UBI C26 H26B sing N N 720 UBI C27 H27 sing N N 721 UBI C27 H27A sing N N 722 UBI C27 H27B sing N N 723 UBI "O3'" "C3'" sing N N 724 UBI "C3'" "C4'" sing N N 725 UBI "C3'" "H3'" sing N N 726 UBI "O3'" "HO3'" sing N N 727 UBI "C5'" "C4'" sing N N 728 UBI "C4'" "O4'" sing N N 729 UBI "C4'" "H4'" sing N N 730 UBI "C5'" "O5'" sing N N 731 UBI "C5'" "H5'" sing N N 732 UBI "C5'" "H5'A" sing N N 733 UBI OP2 HOP2 sing N N 734 UBI OP3 HOP3 sing N N 735 UPE OP1 P doub N N 736 UPE "O5'" P sing N N 737 UPE OP3 P sing N N 738 UPE P OP2 sing N N 739 UPE "C1'" N1 sing N N 740 UPE C2 N1 sing N N 741 UPE N1 C6 sing N N 742 UPE O2 C2 doub N N 743 UPE C2 N3 sing N N 744 UPE N3 C4 sing N N 745 UPE N3 HN3 sing N N 746 UPE C4 O4 doub N N 747 UPE C4 C5 sing N N 748 UPE C6 C5 doub N N 749 UPE C5 C21 sing N N 750 UPE C6 H6 sing N N 751 UPE "C2'" "C1'" sing N N 752 UPE "C1'" "O4'" sing N N 753 UPE "C1'" "H1'" sing N N 754 UPE "C2'" "C3'" sing N N 755 UPE "C2'" "H2'" sing N N 756 UPE "C2'" "H2'A" sing N N 757 UPE C21 O22 doub N N 758 UPE C21 N23 sing N N 759 UPE N23 C24 sing N N 760 UPE N23 HN23 sing N N 761 UPE C24 C25 sing N N 762 UPE C24 H24 sing N N 763 UPE C24 H24A sing N N 764 UPE C25 C26 sing N N 765 UPE C25 H25 sing N N 766 UPE C25 H25A sing N N 767 UPE C31 C26 doub Y N 768 UPE C26 C27 sing Y N 769 UPE C27 C28 doub Y N 770 UPE C27 H27 sing N N 771 UPE C29 C28 sing Y N 772 UPE C28 H28 sing N N 773 UPE C30 C29 doub Y N 774 UPE C29 H29 sing N N 775 UPE "O3'" "C3'" sing N N 776 UPE "C3'" "C4'" sing N N 777 UPE "C3'" "H3'" sing N N 778 UPE "O3'" "HO3'" sing N N 779 UPE C31 C30 sing Y N 780 UPE C30 H30 sing N N 781 UPE C31 H31 sing N N 782 UPE "C4'" "O4'" sing N N 783 UPE "C4'" "C5'" sing N N 784 UPE "C4'" "H4'" sing N N 785 UPE "C5'" "O5'" sing N N 786 UPE "C5'" "H5'" sing N N 787 UPE "C5'" "H5'A" sing N N 788 UPE OP2 HOP2 sing N N 789 UPE OP3 HOP3 sing N N 790 VAL N CA sing N N 791 VAL N H sing N N 792 VAL N H2 sing N N 793 VAL CA C sing N N 794 VAL CA CB sing N N 795 VAL CA HA sing N N 796 VAL C O doub N N 797 VAL C OXT sing N N 798 VAL CB CG1 sing N N 799 VAL CB CG2 sing N N 800 VAL CB HB sing N N 801 VAL CG1 HG11 sing N N 802 VAL CG1 HG12 sing N N 803 VAL CG1 HG13 sing N N 804 VAL CG2 HG21 sing N N 805 VAL CG2 HG22 sing N N 806 VAL CG2 HG23 sing N N 807 VAL OXT HXT sing N N 808 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 4HQX 'double helix' 4HQX 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DC 4 1_555 B DG 6 1_555 -0.058 -0.269 0.369 -1.281 -8.796 -0.965 1 C_DC4:DG6_C C 4 ? C 6 ? 19 1 1 B DC 10 1_555 B DG 15 1_555 0.470 -0.041 -0.443 19.995 15.981 0.529 2 C_DC10:DG15_C C 10 ? C 15 ? 19 1 1 B DG 22 1_555 B DC 14 1_555 -0.353 0.010 -0.170 -12.474 10.457 1.351 3 C_DG22:DC14_C C 22 ? C 14 ? 19 1 1 B DC 23 1_555 B DG 13 1_555 0.075 -0.006 0.524 -2.962 -0.792 0.068 4 C_DC23:DG13_C C 23 ? C 13 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B DC 10 1_555 B DG 15 1_555 B DG 22 1_555 B DC 14 1_555 -4.879 1.807 3.109 -32.645 12.643 61.297 0.958 2.660 5.127 11.464 29.601 69.735 1 CC_DC10DG22:DC14DG15_CC C 10 ? C 15 ? C 22 ? C 14 ? 1 B DG 22 1_555 B DC 14 1_555 B DC 23 1_555 B DG 13 1_555 -0.880 -0.355 3.101 -5.129 4.007 32.374 -1.279 0.712 3.134 7.098 9.084 33.005 2 CC_DG22DC23:DG13DC14_CC C 22 ? C 14 ? C 23 ? C 13 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'SODIUM ION' NA 4 'MAGNESIUM ION' MG 5 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3MJG _pdbx_initial_refinement_model.details 'CHAIN A of 3MJG' #