data_4HR2 # _entry.id 4HR2 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4HR2 pdb_00004hr2 10.2210/pdb4hr2/pdb RCSB RCSB075813 ? ? WWPDB D_1000075813 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 4DUT . unspecified PDB 4EK2 . unspecified TargetTrack SSGCID-ButhA.00438.a . unspecified # _pdbx_database_status.entry_id 4HR2 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2012-10-26 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Seattle Structural Genomics Center for Infectious Disease (SSGCID)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Structure of nucleoside diphosphate kinase (NDK) from Burkholderia thailandensis bound to ADP' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Clifton, M.C.' 1 ? primary 'Abendroth, J.A.' 2 ? # _cell.length_a 91.240 _cell.length_b 91.240 _cell.length_c 90.190 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 4HR2 _cell.pdbx_unique_axis ? _cell.Z_PDB 16 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 41 2 2' _symmetry.entry_id 4HR2 _symmetry.Int_Tables_number 91 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Nucleoside diphosphate kinase' 15937.228 2 2.7.4.6 ? ? ? 2 non-polymer syn "ADENOSINE-5'-DIPHOSPHATE" 427.201 2 ? ? ? ? 3 water nat water 18.015 308 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'NDK, NDP kinase, Nucleoside-2-P kinase' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GPGSMALERTLSIIKPDAVAKNVIGQIYSRFENAGLKIVAARMAHLSRADAEKFYAVHAERPFFKDLVEFMISGPVMIQV LEGEDAILKNRDLMGATDPKKAEKGTIRADFADSIDANAVHGSDAPETARVEIAFFFPEMNVYSR ; _entity_poly.pdbx_seq_one_letter_code_can ;GPGSMALERTLSIIKPDAVAKNVIGQIYSRFENAGLKIVAARMAHLSRADAEKFYAVHAERPFFKDLVEFMISGPVMIQV LEGEDAILKNRDLMGATDPKKAEKGTIRADFADSIDANAVHGSDAPETARVEIAFFFPEMNVYSR ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier SSGCID-ButhA.00438.a # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 PRO n 1 3 GLY n 1 4 SER n 1 5 MET n 1 6 ALA n 1 7 LEU n 1 8 GLU n 1 9 ARG n 1 10 THR n 1 11 LEU n 1 12 SER n 1 13 ILE n 1 14 ILE n 1 15 LYS n 1 16 PRO n 1 17 ASP n 1 18 ALA n 1 19 VAL n 1 20 ALA n 1 21 LYS n 1 22 ASN n 1 23 VAL n 1 24 ILE n 1 25 GLY n 1 26 GLN n 1 27 ILE n 1 28 TYR n 1 29 SER n 1 30 ARG n 1 31 PHE n 1 32 GLU n 1 33 ASN n 1 34 ALA n 1 35 GLY n 1 36 LEU n 1 37 LYS n 1 38 ILE n 1 39 VAL n 1 40 ALA n 1 41 ALA n 1 42 ARG n 1 43 MET n 1 44 ALA n 1 45 HIS n 1 46 LEU n 1 47 SER n 1 48 ARG n 1 49 ALA n 1 50 ASP n 1 51 ALA n 1 52 GLU n 1 53 LYS n 1 54 PHE n 1 55 TYR n 1 56 ALA n 1 57 VAL n 1 58 HIS n 1 59 ALA n 1 60 GLU n 1 61 ARG n 1 62 PRO n 1 63 PHE n 1 64 PHE n 1 65 LYS n 1 66 ASP n 1 67 LEU n 1 68 VAL n 1 69 GLU n 1 70 PHE n 1 71 MET n 1 72 ILE n 1 73 SER n 1 74 GLY n 1 75 PRO n 1 76 VAL n 1 77 MET n 1 78 ILE n 1 79 GLN n 1 80 VAL n 1 81 LEU n 1 82 GLU n 1 83 GLY n 1 84 GLU n 1 85 ASP n 1 86 ALA n 1 87 ILE n 1 88 LEU n 1 89 LYS n 1 90 ASN n 1 91 ARG n 1 92 ASP n 1 93 LEU n 1 94 MET n 1 95 GLY n 1 96 ALA n 1 97 THR n 1 98 ASP n 1 99 PRO n 1 100 LYS n 1 101 LYS n 1 102 ALA n 1 103 GLU n 1 104 LYS n 1 105 GLY n 1 106 THR n 1 107 ILE n 1 108 ARG n 1 109 ALA n 1 110 ASP n 1 111 PHE n 1 112 ALA n 1 113 ASP n 1 114 SER n 1 115 ILE n 1 116 ASP n 1 117 ALA n 1 118 ASN n 1 119 ALA n 1 120 VAL n 1 121 HIS n 1 122 GLY n 1 123 SER n 1 124 ASP n 1 125 ALA n 1 126 PRO n 1 127 GLU n 1 128 THR n 1 129 ALA n 1 130 ARG n 1 131 VAL n 1 132 GLU n 1 133 ILE n 1 134 ALA n 1 135 PHE n 1 136 PHE n 1 137 PHE n 1 138 PRO n 1 139 GLU n 1 140 MET n 1 141 ASN n 1 142 VAL n 1 143 TYR n 1 144 SER n 1 145 ARG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'ndk, BTH_I2231' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'E264 / ATCC 700388 / DSM 13276 / CIP 106301' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Burkholderia thailandensis' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 271848 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code NDK_BURTA _struct_ref.pdbx_db_accession Q2SWE7 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MALERTLSIIKPDAVAKNVIGQIYSRFENAGLKIVAARMAHLSRADAEKFYAVHAERPFFKDLVEFMISGPVMIQVLEGE DAILKNRDLMGATDPKKAEKGTIRADFADSIDANAVHGSDAPETARVEIAFFFPEMNVYSR ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4HR2 A 5 ? 145 ? Q2SWE7 1 ? 141 ? 1 141 2 1 4HR2 B 5 ? 145 ? Q2SWE7 1 ? 141 ? 1 141 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4HR2 GLY A 1 ? UNP Q2SWE7 ? ? 'expression tag' -3 1 1 4HR2 PRO A 2 ? UNP Q2SWE7 ? ? 'expression tag' -2 2 1 4HR2 GLY A 3 ? UNP Q2SWE7 ? ? 'expression tag' -1 3 1 4HR2 SER A 4 ? UNP Q2SWE7 ? ? 'expression tag' 0 4 2 4HR2 GLY B 1 ? UNP Q2SWE7 ? ? 'expression tag' -3 5 2 4HR2 PRO B 2 ? UNP Q2SWE7 ? ? 'expression tag' -2 6 2 4HR2 GLY B 3 ? UNP Q2SWE7 ? ? 'expression tag' -1 7 2 4HR2 SER B 4 ? UNP Q2SWE7 ? ? 'expression tag' 0 8 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ADP non-polymer n "ADENOSINE-5'-DIPHOSPHATE" ? 'C10 H15 N5 O10 P2' 427.201 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 4HR2 _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.94 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 58.23 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 7 _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details ;ButhA.00438.a.A1 PS01186 at 42.64 mg/mL, 1.5 M ammonium sulfate, 0.1 M Bis-Tris propane, pH 7.0, cryoprotectant: 15% ethylene glycol, 1mM ADP, VAPOR DIFFUSION, SITTING DROP, temperature 298K ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'RIGAKU SATURN 944+' _diffrn_detector.pdbx_collection_date 2012-09-09 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU FR-E+ SUPERBRIGHT' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.5418 _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? # _reflns.entry_id 4HR2 _reflns.d_resolution_high 1.950 _reflns.number_obs 27811 _reflns.pdbx_Rmerge_I_obs 0.062 _reflns.pdbx_netI_over_sigmaI 21.37 _reflns.percent_possible_obs 97.9 _reflns.B_iso_Wilson_estimate 23.593 _reflns.observed_criterion_sigma_I -3. _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 40.427 _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.950 2.000 5646 ? 1957 0.442 2.760 ? ? ? ? ? 95.3 1 1 2.000 2.060 6671 ? 1953 0.267 5.000 ? ? ? ? ? 97.3 2 1 2.060 2.120 7278 ? 1939 0.227 6.360 ? ? ? ? ? 99.3 3 1 2.120 2.180 7811 ? 1883 0.217 6.980 ? ? ? ? ? 99.4 4 1 2.180 2.250 7280 ? 1761 0.104 15.590 ? ? ? ? ? 95.0 5 1 2.250 2.330 6928 ? 1545 0.146 11.830 ? ? ? ? ? 86.7 6 1 2.330 2.420 8718 ? 1732 0.140 11.570 ? ? ? ? ? 99.9 7 1 2.420 2.520 9584 ? 1668 0.126 14.320 ? ? ? ? ? 99.9 8 1 2.520 2.630 9463 ? 1603 0.111 15.440 ? ? ? ? ? 100.0 9 1 2.630 2.760 9094 ? 1528 0.090 18.770 ? ? ? ? ? 100.0 10 1 2.760 2.910 8787 ? 1474 0.073 21.780 ? ? ? ? ? 99.9 11 1 2.910 3.080 8204 ? 1385 0.056 27.160 ? ? ? ? ? 100.0 12 1 3.080 3.300 7772 ? 1309 0.045 33.700 ? ? ? ? ? 100.0 13 1 3.300 3.560 7292 ? 1232 0.038 37.840 ? ? ? ? ? 99.8 14 1 3.560 3.900 6211 ? 1116 0.038 48.340 ? ? ? ? ? 97.8 15 1 3.900 4.360 5955 ? 1017 0.027 52.410 ? ? ? ? ? 98.3 16 1 4.360 5.030 5344 ? 922 0.025 55.720 ? ? ? ? ? 99.6 17 1 5.030 6.170 4577 ? 801 0.033 42.920 ? ? ? ? ? 99.8 18 1 6.170 8.720 3464 ? 623 0.026 51.680 ? ? ? ? ? 98.3 19 1 8.720 ? 1773 ? 363 0.019 69.070 ? ? ? ? ? 90.8 20 1 # _refine.entry_id 4HR2 _refine.ls_d_res_high 1.950 _refine.ls_d_res_low 40.427 _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 97.89 _refine.ls_number_reflns_obs 27787 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;U VALUES : WITH TLS ADDED HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS ; _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2092 _refine.ls_R_factor_R_work 0.2076 _refine.ls_wR_factor_R_work 0.1737 _refine.ls_R_factor_R_free 0.2404 _refine.ls_wR_factor_R_free 0.2001 _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 1411 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 20.4499 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] -0.4200 _refine.aniso_B[2][2] -0.4200 _refine.aniso_B[3][3] 0.8500 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9140 _refine.correlation_coeff_Fo_to_Fc_free 0.8920 _refine.overall_SU_R_Cruickshank_DPI 0.1636 _refine.overall_SU_R_free 0.1487 _refine.pdbx_overall_ESU_R 0.1640 _refine.pdbx_overall_ESU_R_Free 0.1490 _refine.overall_SU_ML 0.0910 _refine.overall_SU_B 5.7720 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.2000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model 'PDB ENTRY 4EK2' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set 0.8294 _refine.B_iso_max 56.390 _refine.B_iso_min 8.900 _refine.pdbx_overall_phase_error ? _refine.occupancy_max 1.000 _refine.occupancy_min 0.500 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2153 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 54 _refine_hist.number_atoms_solvent 308 _refine_hist.number_atoms_total 2515 _refine_hist.d_res_high 1.950 _refine_hist.d_res_low 40.427 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 2266 0.009 0.019 ? ? 'X-RAY DIFFRACTION' r_bond_other_d 2125 0.001 0.020 ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 3079 1.413 1.985 ? ? 'X-RAY DIFFRACTION' r_angle_other_deg 4869 0.784 3.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 284 5.814 5.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 103 33.090 23.592 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 362 13.132 15.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 18 11.255 15.000 ? ? 'X-RAY DIFFRACTION' r_chiral_restr 342 0.075 0.200 ? ? 'X-RAY DIFFRACTION' r_gen_planes_refined 2568 0.005 0.021 ? ? 'X-RAY DIFFRACTION' r_gen_planes_other 520 0.001 0.020 ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.d_res_high 1.950 _refine_ls_shell.d_res_low 2.001 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 95.32 _refine_ls_shell.number_reflns_R_work 1847 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.3010 _refine_ls_shell.R_factor_R_free 0.3770 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 108 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 1955 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 4HR2 _struct.title 'Structure of nucleoside diphosphate kinase (NDK) from Burkholderia thailandensis bound to ADP' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4HR2 _struct_keywords.pdbx_keywords TRANSFERASE _struct_keywords.text ;SSGCID, Seattle Structural Genomics Center for Infectious Disease, NIAID, National Institute of Allergy and Infectious Diseases, TRANSFERASE ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LYS A 15 ? LYS A 21 ? LYS A 11 LYS A 17 1 ? 7 HELX_P HELX_P2 2 VAL A 23 ? ALA A 34 ? VAL A 19 ALA A 30 1 ? 12 HELX_P HELX_P3 3 SER A 47 ? TYR A 55 ? SER A 43 TYR A 51 1 ? 9 HELX_P HELX_P4 4 ALA A 56 ? ALA A 59 ? ALA A 52 ALA A 55 5 ? 4 HELX_P HELX_P5 5 PHE A 63 ? ILE A 72 ? PHE A 59 ILE A 68 1 ? 10 HELX_P HELX_P6 6 ASP A 85 ? GLY A 95 ? ASP A 81 GLY A 91 1 ? 11 HELX_P HELX_P7 7 THR A 106 ? ALA A 112 ? THR A 102 ALA A 108 1 ? 7 HELX_P HELX_P8 8 ALA A 125 ? PHE A 137 ? ALA A 121 PHE A 133 1 ? 13 HELX_P HELX_P9 9 PRO A 138 ? VAL A 142 ? PRO A 134 VAL A 138 5 ? 5 HELX_P HELX_P10 10 LYS B 15 ? LYS B 21 ? LYS B 11 LYS B 17 1 ? 7 HELX_P HELX_P11 11 VAL B 23 ? ALA B 34 ? VAL B 19 ALA B 30 1 ? 12 HELX_P HELX_P12 12 SER B 47 ? TYR B 55 ? SER B 43 TYR B 51 1 ? 9 HELX_P HELX_P13 13 ALA B 56 ? ALA B 59 ? ALA B 52 ALA B 55 5 ? 4 HELX_P HELX_P14 14 PHE B 63 ? ILE B 72 ? PHE B 59 ILE B 68 1 ? 10 HELX_P HELX_P15 15 ASP B 85 ? GLY B 95 ? ASP B 81 GLY B 91 1 ? 11 HELX_P HELX_P16 16 THR B 106 ? ALA B 112 ? THR B 102 ALA B 108 1 ? 7 HELX_P HELX_P17 17 SER B 114 ? ASN B 118 ? SER B 110 ASN B 114 5 ? 5 HELX_P HELX_P18 18 ALA B 125 ? PHE B 137 ? ALA B 121 PHE B 133 1 ? 13 HELX_P HELX_P19 19 PRO B 138 ? VAL B 142 ? PRO B 134 VAL B 138 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LYS A 37 ? ALA A 44 ? LYS A 33 ALA A 40 A 2 VAL A 76 ? GLU A 84 ? VAL A 72 GLU A 80 A 3 LEU A 7 ? ILE A 14 ? LEU A 3 ILE A 10 A 4 VAL A 120 ? GLY A 122 ? VAL A 116 GLY A 118 B 1 LYS B 37 ? ALA B 44 ? LYS B 33 ALA B 40 B 2 VAL B 76 ? GLU B 82 ? VAL B 72 GLU B 78 B 3 ARG B 9 ? ILE B 14 ? ARG B 5 ILE B 10 B 4 VAL B 120 ? GLY B 122 ? VAL B 116 GLY B 118 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ALA A 44 ? N ALA A 40 O VAL A 76 ? O VAL A 72 A 2 3 O GLY A 83 ? O GLY A 79 N GLU A 8 ? N GLU A 4 A 3 4 N ILE A 13 ? N ILE A 9 O HIS A 121 ? O HIS A 117 B 1 2 N ALA B 44 ? N ALA B 40 O VAL B 76 ? O VAL B 72 B 2 3 O MET B 77 ? O MET B 73 N ILE B 14 ? N ILE B 10 B 3 4 N ILE B 13 ? N ILE B 9 O HIS B 121 ? O HIS B 117 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A ADP 601 ? 18 'BINDING SITE FOR RESIDUE ADP A 601' AC2 Software B ADP 601 ? 15 'BINDING SITE FOR RESIDUE ADP B 601' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 18 LYS A 15 ? LYS A 11 . ? 1_555 ? 2 AC1 18 HIS A 58 ? HIS A 54 . ? 1_555 ? 3 AC1 18 PHE A 63 ? PHE A 59 . ? 1_555 ? 4 AC1 18 LEU A 67 ? LEU A 63 . ? 1_555 ? 5 AC1 18 ARG A 91 ? ARG A 87 . ? 1_555 ? 6 AC1 18 THR A 97 ? THR A 93 . ? 1_555 ? 7 AC1 18 ARG A 108 ? ARG A 104 . ? 1_555 ? 8 AC1 18 ILE A 115 ? ILE A 111 . ? 1_555 ? 9 AC1 18 ASN A 118 ? ASN A 114 . ? 1_555 ? 10 AC1 18 HOH E . ? HOH A 715 . ? 1_555 ? 11 AC1 18 HOH E . ? HOH A 731 . ? 1_555 ? 12 AC1 18 HOH E . ? HOH A 738 . ? 1_555 ? 13 AC1 18 HOH E . ? HOH A 760 . ? 1_555 ? 14 AC1 18 HOH E . ? HOH A 772 . ? 1_555 ? 15 AC1 18 HOH E . ? HOH A 805 . ? 1_555 ? 16 AC1 18 HOH E . ? HOH A 815 . ? 1_555 ? 17 AC1 18 HOH E . ? HOH A 839 . ? 1_555 ? 18 AC1 18 HOH E . ? HOH A 848 . ? 1_555 ? 19 AC2 15 ALA A 6 ? ALA A 2 . ? 4_564 ? 20 AC2 15 LEU A 7 ? LEU A 3 . ? 4_564 ? 21 AC2 15 LYS B 15 ? LYS B 11 . ? 1_555 ? 22 AC2 15 TYR B 55 ? TYR B 51 . ? 1_555 ? 23 AC2 15 HIS B 58 ? HIS B 54 . ? 1_555 ? 24 AC2 15 PHE B 63 ? PHE B 59 . ? 1_555 ? 25 AC2 15 LEU B 67 ? LEU B 63 . ? 1_555 ? 26 AC2 15 ARG B 108 ? ARG B 104 . ? 1_555 ? 27 AC2 15 ILE B 115 ? ILE B 111 . ? 1_555 ? 28 AC2 15 ASN B 118 ? ASN B 114 . ? 1_555 ? 29 AC2 15 HIS B 121 ? HIS B 117 . ? 1_555 ? 30 AC2 15 GLY B 122 ? GLY B 118 . ? 1_555 ? 31 AC2 15 HOH F . ? HOH B 780 . ? 1_555 ? 32 AC2 15 HOH F . ? HOH B 785 . ? 1_555 ? 33 AC2 15 HOH F . ? HOH B 787 . ? 1_555 ? # _atom_sites.entry_id 4HR2 _atom_sites.fract_transf_matrix[1][1] 0.010960 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.010960 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.011088 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -3 ? ? ? A . n A 1 2 PRO 2 -2 ? ? ? A . n A 1 3 GLY 3 -1 ? ? ? A . n A 1 4 SER 4 0 0 SER SER A . n A 1 5 MET 5 1 1 MET MET A . n A 1 6 ALA 6 2 2 ALA ALA A . n A 1 7 LEU 7 3 3 LEU LEU A . n A 1 8 GLU 8 4 4 GLU GLU A . n A 1 9 ARG 9 5 5 ARG ARG A . n A 1 10 THR 10 6 6 THR THR A . n A 1 11 LEU 11 7 7 LEU LEU A . n A 1 12 SER 12 8 8 SER SER A . n A 1 13 ILE 13 9 9 ILE ILE A . n A 1 14 ILE 14 10 10 ILE ILE A . n A 1 15 LYS 15 11 11 LYS LYS A . n A 1 16 PRO 16 12 12 PRO PRO A . n A 1 17 ASP 17 13 13 ASP ASP A . n A 1 18 ALA 18 14 14 ALA ALA A . n A 1 19 VAL 19 15 15 VAL VAL A . n A 1 20 ALA 20 16 16 ALA ALA A . n A 1 21 LYS 21 17 17 LYS LYS A . n A 1 22 ASN 22 18 18 ASN ASN A . n A 1 23 VAL 23 19 19 VAL VAL A . n A 1 24 ILE 24 20 20 ILE ILE A . n A 1 25 GLY 25 21 21 GLY GLY A . n A 1 26 GLN 26 22 22 GLN GLN A . n A 1 27 ILE 27 23 23 ILE ILE A . n A 1 28 TYR 28 24 24 TYR TYR A . n A 1 29 SER 29 25 25 SER SER A . n A 1 30 ARG 30 26 26 ARG ARG A . n A 1 31 PHE 31 27 27 PHE PHE A . n A 1 32 GLU 32 28 28 GLU GLU A . n A 1 33 ASN 33 29 29 ASN ASN A . n A 1 34 ALA 34 30 30 ALA ALA A . n A 1 35 GLY 35 31 31 GLY GLY A . n A 1 36 LEU 36 32 32 LEU LEU A . n A 1 37 LYS 37 33 33 LYS LYS A . n A 1 38 ILE 38 34 34 ILE ILE A . n A 1 39 VAL 39 35 35 VAL VAL A . n A 1 40 ALA 40 36 36 ALA ALA A . n A 1 41 ALA 41 37 37 ALA ALA A . n A 1 42 ARG 42 38 38 ARG ARG A . n A 1 43 MET 43 39 39 MET MET A . n A 1 44 ALA 44 40 40 ALA ALA A . n A 1 45 HIS 45 41 41 HIS HIS A . n A 1 46 LEU 46 42 42 LEU LEU A . n A 1 47 SER 47 43 43 SER SER A . n A 1 48 ARG 48 44 44 ARG ARG A . n A 1 49 ALA 49 45 45 ALA ALA A . n A 1 50 ASP 50 46 46 ASP ASP A . n A 1 51 ALA 51 47 47 ALA ALA A . n A 1 52 GLU 52 48 48 GLU GLU A . n A 1 53 LYS 53 49 49 LYS LYS A . n A 1 54 PHE 54 50 50 PHE PHE A . n A 1 55 TYR 55 51 51 TYR TYR A . n A 1 56 ALA 56 52 52 ALA ALA A . n A 1 57 VAL 57 53 53 VAL VAL A . n A 1 58 HIS 58 54 54 HIS HIS A . n A 1 59 ALA 59 55 55 ALA ALA A . n A 1 60 GLU 60 56 56 GLU GLU A . n A 1 61 ARG 61 57 57 ARG ARG A . n A 1 62 PRO 62 58 58 PRO PRO A . n A 1 63 PHE 63 59 59 PHE PHE A . n A 1 64 PHE 64 60 60 PHE PHE A . n A 1 65 LYS 65 61 61 LYS LYS A . n A 1 66 ASP 66 62 62 ASP ASP A . n A 1 67 LEU 67 63 63 LEU LEU A . n A 1 68 VAL 68 64 64 VAL VAL A . n A 1 69 GLU 69 65 65 GLU GLU A . n A 1 70 PHE 70 66 66 PHE PHE A . n A 1 71 MET 71 67 67 MET MET A . n A 1 72 ILE 72 68 68 ILE ILE A . n A 1 73 SER 73 69 69 SER SER A . n A 1 74 GLY 74 70 70 GLY GLY A . n A 1 75 PRO 75 71 71 PRO PRO A . n A 1 76 VAL 76 72 72 VAL VAL A . n A 1 77 MET 77 73 73 MET MET A . n A 1 78 ILE 78 74 74 ILE ILE A . n A 1 79 GLN 79 75 75 GLN GLN A . n A 1 80 VAL 80 76 76 VAL VAL A . n A 1 81 LEU 81 77 77 LEU LEU A . n A 1 82 GLU 82 78 78 GLU GLU A . n A 1 83 GLY 83 79 79 GLY GLY A . n A 1 84 GLU 84 80 80 GLU GLU A . n A 1 85 ASP 85 81 81 ASP ASP A . n A 1 86 ALA 86 82 82 ALA ALA A . n A 1 87 ILE 87 83 83 ILE ILE A . n A 1 88 LEU 88 84 84 LEU LEU A . n A 1 89 LYS 89 85 85 LYS LYS A . n A 1 90 ASN 90 86 86 ASN ASN A . n A 1 91 ARG 91 87 87 ARG ARG A . n A 1 92 ASP 92 88 88 ASP ASP A . n A 1 93 LEU 93 89 89 LEU LEU A . n A 1 94 MET 94 90 90 MET MET A . n A 1 95 GLY 95 91 91 GLY GLY A . n A 1 96 ALA 96 92 92 ALA ALA A . n A 1 97 THR 97 93 93 THR THR A . n A 1 98 ASP 98 94 94 ASP ASP A . n A 1 99 PRO 99 95 95 PRO PRO A . n A 1 100 LYS 100 96 96 LYS LYS A . n A 1 101 LYS 101 97 97 LYS LYS A . n A 1 102 ALA 102 98 98 ALA ALA A . n A 1 103 GLU 103 99 99 GLU GLU A . n A 1 104 LYS 104 100 100 LYS LYS A . n A 1 105 GLY 105 101 101 GLY GLY A . n A 1 106 THR 106 102 102 THR THR A . n A 1 107 ILE 107 103 103 ILE ILE A . n A 1 108 ARG 108 104 104 ARG ARG A . n A 1 109 ALA 109 105 105 ALA ALA A . n A 1 110 ASP 110 106 106 ASP ASP A . n A 1 111 PHE 111 107 107 PHE PHE A . n A 1 112 ALA 112 108 108 ALA ALA A . n A 1 113 ASP 113 109 109 ASP ASP A . n A 1 114 SER 114 110 110 SER SER A . n A 1 115 ILE 115 111 111 ILE ILE A . n A 1 116 ASP 116 112 112 ASP ASP A . n A 1 117 ALA 117 113 113 ALA ALA A . n A 1 118 ASN 118 114 114 ASN ASN A . n A 1 119 ALA 119 115 115 ALA ALA A . n A 1 120 VAL 120 116 116 VAL VAL A . n A 1 121 HIS 121 117 117 HIS HIS A . n A 1 122 GLY 122 118 118 GLY GLY A . n A 1 123 SER 123 119 119 SER SER A . n A 1 124 ASP 124 120 120 ASP ASP A . n A 1 125 ALA 125 121 121 ALA ALA A . n A 1 126 PRO 126 122 122 PRO PRO A . n A 1 127 GLU 127 123 123 GLU GLU A . n A 1 128 THR 128 124 124 THR THR A . n A 1 129 ALA 129 125 125 ALA ALA A . n A 1 130 ARG 130 126 126 ARG ARG A . n A 1 131 VAL 131 127 127 VAL VAL A . n A 1 132 GLU 132 128 128 GLU GLU A . n A 1 133 ILE 133 129 129 ILE ILE A . n A 1 134 ALA 134 130 130 ALA ALA A . n A 1 135 PHE 135 131 131 PHE PHE A . n A 1 136 PHE 136 132 132 PHE PHE A . n A 1 137 PHE 137 133 133 PHE PHE A . n A 1 138 PRO 138 134 134 PRO PRO A . n A 1 139 GLU 139 135 135 GLU GLU A . n A 1 140 MET 140 136 136 MET MET A . n A 1 141 ASN 141 137 137 ASN ASN A . n A 1 142 VAL 142 138 138 VAL VAL A . n A 1 143 TYR 143 139 139 TYR TYR A . n A 1 144 SER 144 140 140 SER SER A . n A 1 145 ARG 145 141 141 ARG ARG A . n B 1 1 GLY 1 -3 ? ? ? B . n B 1 2 PRO 2 -2 ? ? ? B . n B 1 3 GLY 3 -1 ? ? ? B . n B 1 4 SER 4 0 ? ? ? B . n B 1 5 MET 5 1 ? ? ? B . n B 1 6 ALA 6 2 2 ALA ALA B . n B 1 7 LEU 7 3 3 LEU LEU B . n B 1 8 GLU 8 4 4 GLU GLU B . n B 1 9 ARG 9 5 5 ARG ARG B . n B 1 10 THR 10 6 6 THR THR B . n B 1 11 LEU 11 7 7 LEU LEU B . n B 1 12 SER 12 8 8 SER SER B . n B 1 13 ILE 13 9 9 ILE ILE B . n B 1 14 ILE 14 10 10 ILE ILE B . n B 1 15 LYS 15 11 11 LYS LYS B . n B 1 16 PRO 16 12 12 PRO PRO B . n B 1 17 ASP 17 13 13 ASP ASP B . n B 1 18 ALA 18 14 14 ALA ALA B . n B 1 19 VAL 19 15 15 VAL VAL B . n B 1 20 ALA 20 16 16 ALA ALA B . n B 1 21 LYS 21 17 17 LYS LYS B . n B 1 22 ASN 22 18 18 ASN ASN B . n B 1 23 VAL 23 19 19 VAL VAL B . n B 1 24 ILE 24 20 20 ILE ILE B . n B 1 25 GLY 25 21 21 GLY GLY B . n B 1 26 GLN 26 22 22 GLN GLN B . n B 1 27 ILE 27 23 23 ILE ILE B . n B 1 28 TYR 28 24 24 TYR TYR B . n B 1 29 SER 29 25 25 SER SER B . n B 1 30 ARG 30 26 26 ARG ARG B . n B 1 31 PHE 31 27 27 PHE PHE B . n B 1 32 GLU 32 28 28 GLU GLU B . n B 1 33 ASN 33 29 29 ASN ASN B . n B 1 34 ALA 34 30 30 ALA ALA B . n B 1 35 GLY 35 31 31 GLY GLY B . n B 1 36 LEU 36 32 32 LEU LEU B . n B 1 37 LYS 37 33 33 LYS LYS B . n B 1 38 ILE 38 34 34 ILE ILE B . n B 1 39 VAL 39 35 35 VAL VAL B . n B 1 40 ALA 40 36 36 ALA ALA B . n B 1 41 ALA 41 37 37 ALA ALA B . n B 1 42 ARG 42 38 38 ARG ARG B . n B 1 43 MET 43 39 39 MET MET B . n B 1 44 ALA 44 40 40 ALA ALA B . n B 1 45 HIS 45 41 41 HIS HIS B . n B 1 46 LEU 46 42 42 LEU LEU B . n B 1 47 SER 47 43 43 SER SER B . n B 1 48 ARG 48 44 44 ARG ARG B . n B 1 49 ALA 49 45 45 ALA ALA B . n B 1 50 ASP 50 46 46 ASP ASP B . n B 1 51 ALA 51 47 47 ALA ALA B . n B 1 52 GLU 52 48 48 GLU GLU B . n B 1 53 LYS 53 49 49 LYS LYS B . n B 1 54 PHE 54 50 50 PHE PHE B . n B 1 55 TYR 55 51 51 TYR TYR B . n B 1 56 ALA 56 52 52 ALA ALA B . n B 1 57 VAL 57 53 53 VAL VAL B . n B 1 58 HIS 58 54 54 HIS HIS B . n B 1 59 ALA 59 55 55 ALA ALA B . n B 1 60 GLU 60 56 56 GLU GLU B . n B 1 61 ARG 61 57 57 ARG ARG B . n B 1 62 PRO 62 58 58 PRO PRO B . n B 1 63 PHE 63 59 59 PHE PHE B . n B 1 64 PHE 64 60 60 PHE PHE B . n B 1 65 LYS 65 61 61 LYS LYS B . n B 1 66 ASP 66 62 62 ASP ASP B . n B 1 67 LEU 67 63 63 LEU LEU B . n B 1 68 VAL 68 64 64 VAL VAL B . n B 1 69 GLU 69 65 65 GLU GLU B . n B 1 70 PHE 70 66 66 PHE PHE B . n B 1 71 MET 71 67 67 MET MET B . n B 1 72 ILE 72 68 68 ILE ILE B . n B 1 73 SER 73 69 69 SER SER B . n B 1 74 GLY 74 70 70 GLY GLY B . n B 1 75 PRO 75 71 71 PRO PRO B . n B 1 76 VAL 76 72 72 VAL VAL B . n B 1 77 MET 77 73 73 MET MET B . n B 1 78 ILE 78 74 74 ILE ILE B . n B 1 79 GLN 79 75 75 GLN GLN B . n B 1 80 VAL 80 76 76 VAL VAL B . n B 1 81 LEU 81 77 77 LEU LEU B . n B 1 82 GLU 82 78 78 GLU GLU B . n B 1 83 GLY 83 79 79 GLY GLY B . n B 1 84 GLU 84 80 80 GLU GLU B . n B 1 85 ASP 85 81 81 ASP ASP B . n B 1 86 ALA 86 82 82 ALA ALA B . n B 1 87 ILE 87 83 83 ILE ILE B . n B 1 88 LEU 88 84 84 LEU LEU B . n B 1 89 LYS 89 85 85 LYS LYS B . n B 1 90 ASN 90 86 86 ASN ASN B . n B 1 91 ARG 91 87 87 ARG ARG B . n B 1 92 ASP 92 88 88 ASP ASP B . n B 1 93 LEU 93 89 89 LEU LEU B . n B 1 94 MET 94 90 90 MET MET B . n B 1 95 GLY 95 91 91 GLY GLY B . n B 1 96 ALA 96 92 92 ALA ALA B . n B 1 97 THR 97 93 93 THR THR B . n B 1 98 ASP 98 94 94 ASP ASP B . n B 1 99 PRO 99 95 95 PRO PRO B . n B 1 100 LYS 100 96 96 LYS LYS B . n B 1 101 LYS 101 97 97 LYS LYS B . n B 1 102 ALA 102 98 98 ALA ALA B . n B 1 103 GLU 103 99 99 GLU GLU B . n B 1 104 LYS 104 100 100 LYS LYS B . n B 1 105 GLY 105 101 101 GLY GLY B . n B 1 106 THR 106 102 102 THR THR B . n B 1 107 ILE 107 103 103 ILE ILE B . n B 1 108 ARG 108 104 104 ARG ARG B . n B 1 109 ALA 109 105 105 ALA ALA B . n B 1 110 ASP 110 106 106 ASP ASP B . n B 1 111 PHE 111 107 107 PHE PHE B . n B 1 112 ALA 112 108 108 ALA ALA B . n B 1 113 ASP 113 109 109 ASP ASP B . n B 1 114 SER 114 110 110 SER SER B . n B 1 115 ILE 115 111 111 ILE ILE B . n B 1 116 ASP 116 112 112 ASP ASP B . n B 1 117 ALA 117 113 113 ALA ALA B . n B 1 118 ASN 118 114 114 ASN ASN B . n B 1 119 ALA 119 115 115 ALA ALA B . n B 1 120 VAL 120 116 116 VAL VAL B . n B 1 121 HIS 121 117 117 HIS HIS B . n B 1 122 GLY 122 118 118 GLY GLY B . n B 1 123 SER 123 119 119 SER SER B . n B 1 124 ASP 124 120 120 ASP ASP B . n B 1 125 ALA 125 121 121 ALA ALA B . n B 1 126 PRO 126 122 122 PRO PRO B . n B 1 127 GLU 127 123 123 GLU GLU B . n B 1 128 THR 128 124 124 THR THR B . n B 1 129 ALA 129 125 125 ALA ALA B . n B 1 130 ARG 130 126 126 ARG ARG B . n B 1 131 VAL 131 127 127 VAL VAL B . n B 1 132 GLU 132 128 128 GLU GLU B . n B 1 133 ILE 133 129 129 ILE ILE B . n B 1 134 ALA 134 130 130 ALA ALA B . n B 1 135 PHE 135 131 131 PHE PHE B . n B 1 136 PHE 136 132 132 PHE PHE B . n B 1 137 PHE 137 133 133 PHE PHE B . n B 1 138 PRO 138 134 134 PRO PRO B . n B 1 139 GLU 139 135 135 GLU GLU B . n B 1 140 MET 140 136 136 MET MET B . n B 1 141 ASN 141 137 137 ASN ASN B . n B 1 142 VAL 142 138 138 VAL VAL B . n B 1 143 TYR 143 139 139 TYR TYR B . n B 1 144 SER 144 140 140 SER SER B . n B 1 145 ARG 145 141 141 ARG ARG B . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NIAID, National Institute of Allergy and Infectious Diseases' _pdbx_SG_project.full_name_of_center 'Seattle Structural Genomics Center for Infectious Disease' _pdbx_SG_project.initial_of_center SSGCID # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ADP 1 601 601 ADP ADP A . D 2 ADP 1 601 601 ADP ADP B . E 3 HOH 1 701 1 HOH HOH A . E 3 HOH 2 702 3 HOH HOH A . E 3 HOH 3 703 9 HOH HOH A . E 3 HOH 4 704 12 HOH HOH A . E 3 HOH 5 705 17 HOH HOH A . E 3 HOH 6 706 23 HOH HOH A . E 3 HOH 7 707 24 HOH HOH A . E 3 HOH 8 708 27 HOH HOH A . E 3 HOH 9 709 28 HOH HOH A . E 3 HOH 10 710 35 HOH HOH A . E 3 HOH 11 711 37 HOH HOH A . E 3 HOH 12 712 40 HOH HOH A . E 3 HOH 13 713 41 HOH HOH A . E 3 HOH 14 714 43 HOH HOH A . E 3 HOH 15 715 46 HOH HOH A . E 3 HOH 16 716 47 HOH HOH A . E 3 HOH 17 717 53 HOH HOH A . E 3 HOH 18 718 54 HOH HOH A . E 3 HOH 19 719 55 HOH HOH A . E 3 HOH 20 720 56 HOH HOH A . E 3 HOH 21 721 58 HOH HOH A . E 3 HOH 22 722 60 HOH HOH A . E 3 HOH 23 723 62 HOH HOH A . E 3 HOH 24 724 64 HOH HOH A . E 3 HOH 25 725 67 HOH HOH A . E 3 HOH 26 726 68 HOH HOH A . E 3 HOH 27 727 70 HOH HOH A . E 3 HOH 28 728 71 HOH HOH A . E 3 HOH 29 729 73 HOH HOH A . E 3 HOH 30 730 77 HOH HOH A . E 3 HOH 31 731 79 HOH HOH A . E 3 HOH 32 732 83 HOH HOH A . E 3 HOH 33 733 85 HOH HOH A . E 3 HOH 34 734 86 HOH HOH A . E 3 HOH 35 735 90 HOH HOH A . E 3 HOH 36 736 92 HOH HOH A . E 3 HOH 37 737 94 HOH HOH A . E 3 HOH 38 738 95 HOH HOH A . E 3 HOH 39 739 96 HOH HOH A . E 3 HOH 40 740 97 HOH HOH A . E 3 HOH 41 741 98 HOH HOH A . E 3 HOH 42 742 100 HOH HOH A . E 3 HOH 43 743 103 HOH HOH A . E 3 HOH 44 744 104 HOH HOH A . E 3 HOH 45 745 108 HOH HOH A . E 3 HOH 46 746 109 HOH HOH A . E 3 HOH 47 747 112 HOH HOH A . E 3 HOH 48 748 113 HOH HOH A . E 3 HOH 49 749 115 HOH HOH A . E 3 HOH 50 750 117 HOH HOH A . E 3 HOH 51 751 123 HOH HOH A . E 3 HOH 52 752 124 HOH HOH A . E 3 HOH 53 753 125 HOH HOH A . E 3 HOH 54 754 126 HOH HOH A . E 3 HOH 55 755 127 HOH HOH A . E 3 HOH 56 756 128 HOH HOH A . E 3 HOH 57 757 129 HOH HOH A . E 3 HOH 58 758 130 HOH HOH A . E 3 HOH 59 759 132 HOH HOH A . E 3 HOH 60 760 134 HOH HOH A . E 3 HOH 61 761 138 HOH HOH A . E 3 HOH 62 762 139 HOH HOH A . E 3 HOH 63 763 140 HOH HOH A . E 3 HOH 64 764 143 HOH HOH A . E 3 HOH 65 765 152 HOH HOH A . E 3 HOH 66 766 155 HOH HOH A . E 3 HOH 67 767 157 HOH HOH A . E 3 HOH 68 768 159 HOH HOH A . E 3 HOH 69 769 160 HOH HOH A . E 3 HOH 70 770 161 HOH HOH A . E 3 HOH 71 771 163 HOH HOH A . E 3 HOH 72 772 164 HOH HOH A . E 3 HOH 73 773 165 HOH HOH A . E 3 HOH 74 774 166 HOH HOH A . E 3 HOH 75 775 168 HOH HOH A . E 3 HOH 76 776 170 HOH HOH A . E 3 HOH 77 777 174 HOH HOH A . E 3 HOH 78 778 175 HOH HOH A . E 3 HOH 79 779 176 HOH HOH A . E 3 HOH 80 780 178 HOH HOH A . E 3 HOH 81 781 181 HOH HOH A . E 3 HOH 82 782 183 HOH HOH A . E 3 HOH 83 783 184 HOH HOH A . E 3 HOH 84 784 187 HOH HOH A . E 3 HOH 85 785 191 HOH HOH A . E 3 HOH 86 786 192 HOH HOH A . E 3 HOH 87 787 198 HOH HOH A . E 3 HOH 88 788 199 HOH HOH A . E 3 HOH 89 789 202 HOH HOH A . E 3 HOH 90 790 206 HOH HOH A . E 3 HOH 91 791 207 HOH HOH A . E 3 HOH 92 792 210 HOH HOH A . E 3 HOH 93 793 212 HOH HOH A . E 3 HOH 94 794 213 HOH HOH A . E 3 HOH 95 795 214 HOH HOH A . E 3 HOH 96 796 215 HOH HOH A . E 3 HOH 97 797 219 HOH HOH A . E 3 HOH 98 798 226 HOH HOH A . E 3 HOH 99 799 227 HOH HOH A . E 3 HOH 100 800 229 HOH HOH A . E 3 HOH 101 801 231 HOH HOH A . E 3 HOH 102 802 232 HOH HOH A . E 3 HOH 103 803 233 HOH HOH A . E 3 HOH 104 804 234 HOH HOH A . E 3 HOH 105 805 235 HOH HOH A . E 3 HOH 106 806 236 HOH HOH A . E 3 HOH 107 807 237 HOH HOH A . E 3 HOH 108 808 240 HOH HOH A . E 3 HOH 109 809 242 HOH HOH A . E 3 HOH 110 810 244 HOH HOH A . E 3 HOH 111 811 245 HOH HOH A . E 3 HOH 112 812 246 HOH HOH A . E 3 HOH 113 813 251 HOH HOH A . E 3 HOH 114 814 252 HOH HOH A . E 3 HOH 115 815 253 HOH HOH A . E 3 HOH 116 816 260 HOH HOH A . E 3 HOH 117 817 261 HOH HOH A . E 3 HOH 118 818 262 HOH HOH A . E 3 HOH 119 819 266 HOH HOH A . E 3 HOH 120 820 268 HOH HOH A . E 3 HOH 121 821 270 HOH HOH A . E 3 HOH 122 822 277 HOH HOH A . E 3 HOH 123 823 281 HOH HOH A . E 3 HOH 124 824 283 HOH HOH A . E 3 HOH 125 825 284 HOH HOH A . E 3 HOH 126 826 285 HOH HOH A . E 3 HOH 127 827 286 HOH HOH A . E 3 HOH 128 828 288 HOH HOH A . E 3 HOH 129 829 289 HOH HOH A . E 3 HOH 130 830 290 HOH HOH A . E 3 HOH 131 831 292 HOH HOH A . E 3 HOH 132 832 293 HOH HOH A . E 3 HOH 133 833 295 HOH HOH A . E 3 HOH 134 834 296 HOH HOH A . E 3 HOH 135 835 303 HOH HOH A . E 3 HOH 136 836 309 HOH HOH A . E 3 HOH 137 837 310 HOH HOH A . E 3 HOH 138 838 311 HOH HOH A . E 3 HOH 139 839 312 HOH HOH A . E 3 HOH 140 840 313 HOH HOH A . E 3 HOH 141 841 314 HOH HOH A . E 3 HOH 142 842 315 HOH HOH A . E 3 HOH 143 843 316 HOH HOH A . E 3 HOH 144 844 321 HOH HOH A . E 3 HOH 145 845 326 HOH HOH A . E 3 HOH 146 846 327 HOH HOH A . E 3 HOH 147 847 332 HOH HOH A . E 3 HOH 148 848 335 HOH HOH A . E 3 HOH 149 849 336 HOH HOH A . E 3 HOH 150 850 338 HOH HOH A . E 3 HOH 151 851 339 HOH HOH A . E 3 HOH 152 852 342 HOH HOH A . E 3 HOH 153 853 344 HOH HOH A . E 3 HOH 154 854 345 HOH HOH A . E 3 HOH 155 855 349 HOH HOH A . E 3 HOH 156 856 351 HOH HOH A . E 3 HOH 157 857 356 HOH HOH A . E 3 HOH 158 858 357 HOH HOH A . E 3 HOH 159 859 359 HOH HOH A . E 3 HOH 160 860 360 HOH HOH A . E 3 HOH 161 861 363 HOH HOH A . E 3 HOH 162 862 364 HOH HOH A . E 3 HOH 163 863 365 HOH HOH A . E 3 HOH 164 864 366 HOH HOH A . E 3 HOH 165 865 367 HOH HOH A . E 3 HOH 166 866 368 HOH HOH A . E 3 HOH 167 867 370 HOH HOH A . F 3 HOH 1 701 2 HOH HOH B . F 3 HOH 2 702 5 HOH HOH B . F 3 HOH 3 703 6 HOH HOH B . F 3 HOH 4 704 8 HOH HOH B . F 3 HOH 5 705 10 HOH HOH B . F 3 HOH 6 706 11 HOH HOH B . F 3 HOH 7 707 13 HOH HOH B . F 3 HOH 8 708 14 HOH HOH B . F 3 HOH 9 709 15 HOH HOH B . F 3 HOH 10 710 18 HOH HOH B . F 3 HOH 11 711 22 HOH HOH B . F 3 HOH 12 712 25 HOH HOH B . F 3 HOH 13 713 29 HOH HOH B . F 3 HOH 14 714 30 HOH HOH B . F 3 HOH 15 715 31 HOH HOH B . F 3 HOH 16 716 32 HOH HOH B . F 3 HOH 17 717 33 HOH HOH B . F 3 HOH 18 718 34 HOH HOH B . F 3 HOH 19 719 36 HOH HOH B . F 3 HOH 20 720 38 HOH HOH B . F 3 HOH 21 721 42 HOH HOH B . F 3 HOH 22 722 44 HOH HOH B . F 3 HOH 23 723 49 HOH HOH B . F 3 HOH 24 724 50 HOH HOH B . F 3 HOH 25 725 51 HOH HOH B . F 3 HOH 26 726 52 HOH HOH B . F 3 HOH 27 727 59 HOH HOH B . F 3 HOH 28 728 61 HOH HOH B . F 3 HOH 29 729 63 HOH HOH B . F 3 HOH 30 730 69 HOH HOH B . F 3 HOH 31 731 72 HOH HOH B . F 3 HOH 32 732 74 HOH HOH B . F 3 HOH 33 733 75 HOH HOH B . F 3 HOH 34 734 78 HOH HOH B . F 3 HOH 35 735 80 HOH HOH B . F 3 HOH 36 736 81 HOH HOH B . F 3 HOH 37 737 82 HOH HOH B . F 3 HOH 38 738 84 HOH HOH B . F 3 HOH 39 739 87 HOH HOH B . F 3 HOH 40 740 88 HOH HOH B . F 3 HOH 41 741 91 HOH HOH B . F 3 HOH 42 742 93 HOH HOH B . F 3 HOH 43 743 101 HOH HOH B . F 3 HOH 44 744 102 HOH HOH B . F 3 HOH 45 745 105 HOH HOH B . F 3 HOH 46 746 107 HOH HOH B . F 3 HOH 47 747 110 HOH HOH B . F 3 HOH 48 748 111 HOH HOH B . F 3 HOH 49 749 114 HOH HOH B . F 3 HOH 50 750 118 HOH HOH B . F 3 HOH 51 751 119 HOH HOH B . F 3 HOH 52 752 121 HOH HOH B . F 3 HOH 53 753 122 HOH HOH B . F 3 HOH 54 754 131 HOH HOH B . F 3 HOH 55 755 136 HOH HOH B . F 3 HOH 56 756 141 HOH HOH B . F 3 HOH 57 757 142 HOH HOH B . F 3 HOH 58 758 145 HOH HOH B . F 3 HOH 59 759 150 HOH HOH B . F 3 HOH 60 760 153 HOH HOH B . F 3 HOH 61 761 154 HOH HOH B . F 3 HOH 62 762 156 HOH HOH B . F 3 HOH 63 763 167 HOH HOH B . F 3 HOH 64 764 169 HOH HOH B . F 3 HOH 65 765 171 HOH HOH B . F 3 HOH 66 766 172 HOH HOH B . F 3 HOH 67 767 173 HOH HOH B . F 3 HOH 68 768 177 HOH HOH B . F 3 HOH 69 769 179 HOH HOH B . F 3 HOH 70 770 180 HOH HOH B . F 3 HOH 71 771 185 HOH HOH B . F 3 HOH 72 772 186 HOH HOH B . F 3 HOH 73 773 188 HOH HOH B . F 3 HOH 74 774 193 HOH HOH B . F 3 HOH 75 775 195 HOH HOH B . F 3 HOH 76 776 204 HOH HOH B . F 3 HOH 77 777 205 HOH HOH B . F 3 HOH 78 778 208 HOH HOH B . F 3 HOH 79 779 217 HOH HOH B . F 3 HOH 80 780 221 HOH HOH B . F 3 HOH 81 781 222 HOH HOH B . F 3 HOH 82 782 228 HOH HOH B . F 3 HOH 83 783 239 HOH HOH B . F 3 HOH 84 784 241 HOH HOH B . F 3 HOH 85 785 247 HOH HOH B . F 3 HOH 86 786 248 HOH HOH B . F 3 HOH 87 787 249 HOH HOH B . F 3 HOH 88 788 250 HOH HOH B . F 3 HOH 89 789 254 HOH HOH B . F 3 HOH 90 790 255 HOH HOH B . F 3 HOH 91 791 256 HOH HOH B . F 3 HOH 92 792 257 HOH HOH B . F 3 HOH 93 793 258 HOH HOH B . F 3 HOH 94 794 263 HOH HOH B . F 3 HOH 95 795 264 HOH HOH B . F 3 HOH 96 796 265 HOH HOH B . F 3 HOH 97 797 267 HOH HOH B . F 3 HOH 98 798 269 HOH HOH B . F 3 HOH 99 799 271 HOH HOH B . F 3 HOH 100 800 272 HOH HOH B . F 3 HOH 101 801 273 HOH HOH B . F 3 HOH 102 802 274 HOH HOH B . F 3 HOH 103 803 275 HOH HOH B . F 3 HOH 104 804 276 HOH HOH B . F 3 HOH 105 805 278 HOH HOH B . F 3 HOH 106 806 282 HOH HOH B . F 3 HOH 107 807 294 HOH HOH B . F 3 HOH 108 808 297 HOH HOH B . F 3 HOH 109 809 298 HOH HOH B . F 3 HOH 110 810 304 HOH HOH B . F 3 HOH 111 811 305 HOH HOH B . F 3 HOH 112 812 306 HOH HOH B . F 3 HOH 113 813 307 HOH HOH B . F 3 HOH 114 814 308 HOH HOH B . F 3 HOH 115 815 317 HOH HOH B . F 3 HOH 116 816 318 HOH HOH B . F 3 HOH 117 817 319 HOH HOH B . F 3 HOH 118 818 320 HOH HOH B . F 3 HOH 119 819 322 HOH HOH B . F 3 HOH 120 820 323 HOH HOH B . F 3 HOH 121 821 324 HOH HOH B . F 3 HOH 122 822 328 HOH HOH B . F 3 HOH 123 823 329 HOH HOH B . F 3 HOH 124 824 330 HOH HOH B . F 3 HOH 125 825 331 HOH HOH B . F 3 HOH 126 826 333 HOH HOH B . F 3 HOH 127 827 334 HOH HOH B . F 3 HOH 128 828 337 HOH HOH B . F 3 HOH 129 829 340 HOH HOH B . F 3 HOH 130 830 341 HOH HOH B . F 3 HOH 131 831 343 HOH HOH B . F 3 HOH 132 832 347 HOH HOH B . F 3 HOH 133 833 350 HOH HOH B . F 3 HOH 134 834 352 HOH HOH B . F 3 HOH 135 835 354 HOH HOH B . F 3 HOH 136 836 355 HOH HOH B . F 3 HOH 137 837 358 HOH HOH B . F 3 HOH 138 838 361 HOH HOH B . F 3 HOH 139 839 362 HOH HOH B . F 3 HOH 140 840 369 HOH HOH B . F 3 HOH 141 841 371 HOH HOH B . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 author_defined_assembly ? monomeric 1 3 software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C,E 2 1 B,D,F 3 1 A,B,C,D,E,F # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 3 'ABSA (A^2)' 3250 ? 3 MORE -22 ? 3 'SSA (A^2)' 12420 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 781 ? E HOH . 2 1 B HOH 789 ? F HOH . 3 1 B HOH 841 ? F HOH . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-11-07 2 'Structure model' 1 1 2023-09-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Derived calculations' 4 2 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' database_2 4 2 'Structure model' pdbx_initial_refinement_model 5 2 'Structure model' struct_ref_seq_dif 6 2 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_database_2.pdbx_DOI' 2 2 'Structure model' '_database_2.pdbx_database_accession' 3 2 'Structure model' '_struct_ref_seq_dif.details' 4 2 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 2 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 2 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 15.7202 18.9914 4.4848 0.0741 0.0774 0.0608 0.0088 0.0229 0.0348 0.9303 0.7067 0.7751 -0.0101 -0.1006 0.2210 -0.0562 -0.0008 0.0571 -0.1217 -0.1423 0.0422 0.0840 0.0869 0.0753 'X-RAY DIFFRACTION' 2 ? refined 9.8319 20.0976 16.1945 0.1258 0.1500 0.0313 -0.0172 0.0425 0.0382 6.1386 4.8901 4.4204 -0.3306 0.2077 -0.0631 0.0410 -0.0046 -0.0364 -0.4257 -0.2162 0.2203 0.4076 0.1661 -0.1668 'X-RAY DIFFRACTION' 3 ? refined 22.1728 18.2011 4.1507 0.0812 0.0837 0.0307 0.0056 0.0031 0.0283 2.2176 1.0972 0.9984 -0.1528 -0.9243 -0.0288 -0.1110 0.0525 0.0585 -0.1686 -0.2068 -0.0579 0.0169 0.0440 0.0982 'X-RAY DIFFRACTION' 4 ? refined 18.2697 39.4511 -6.3288 0.1216 0.0390 0.0493 -0.0289 0.0155 0.0027 0.9682 0.6149 1.1501 0.0488 -0.4086 0.2161 0.0525 0.0161 -0.0686 -0.0127 0.0578 0.0041 -0.0732 -0.2531 0.0737 'X-RAY DIFFRACTION' 5 ? refined 12.7657 51.4380 -1.6367 0.1078 0.0356 0.1624 0.0228 0.0544 0.0425 10.6815 14.0441 6.7532 5.3539 3.3029 1.5639 -0.0428 -0.0739 0.1167 0.4230 0.9022 -0.0525 -0.2615 -0.4319 -0.0682 'X-RAY DIFFRACTION' 6 ? refined 14.9046 39.7411 -7.9461 0.0835 0.0176 0.0511 0.0111 0.0228 0.0057 1.0850 1.7948 1.6460 0.3581 -0.0986 0.5494 0.0368 0.0586 -0.0954 0.0272 0.1222 -0.0332 -0.0105 -0.1775 0.0326 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 0 A 83 ? . . . . ? 'X-RAY DIFFRACTION' 2 2 A 84 A 109 ? . . . . ? 'X-RAY DIFFRACTION' 3 3 A 110 A 141 ? . . . . ? 'X-RAY DIFFRACTION' 4 4 B 2 B 86 ? . . . . ? 'X-RAY DIFFRACTION' 5 5 B 87 B 99 ? . . . . ? 'X-RAY DIFFRACTION' 6 6 B 100 B 141 ? . . . . ? # _pdbx_phasing_MR.entry_id 4HR2 _pdbx_phasing_MR.method_rotation ? _pdbx_phasing_MR.method_translation ? _pdbx_phasing_MR.model_details 'Phaser MODE: MR_AUTO' _pdbx_phasing_MR.R_factor ? _pdbx_phasing_MR.R_rigid_body ? _pdbx_phasing_MR.correlation_coeff_Fo_to_Fc ? _pdbx_phasing_MR.correlation_coeff_Io_to_Ic ? _pdbx_phasing_MR.d_res_high_rotation 2.500 _pdbx_phasing_MR.d_res_low_rotation 40.430 _pdbx_phasing_MR.d_res_high_translation 2.500 _pdbx_phasing_MR.d_res_low_translation 40.430 _pdbx_phasing_MR.packing ? _pdbx_phasing_MR.reflns_percent_rotation ? _pdbx_phasing_MR.reflns_percent_translation ? _pdbx_phasing_MR.sigma_F_rotation ? _pdbx_phasing_MR.sigma_F_translation ? _pdbx_phasing_MR.sigma_I_rotation ? _pdbx_phasing_MR.sigma_I_translation ? # _phasing.method MR # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 XSCALE . ? package 'Wolfgang Kabsch' ? 'data scaling' http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html ? ? 2 PHASER 2.5.1 'Fri Jul 6 07:21:42 2012 (svn )' program 'Randy J. Read' cimr-phaser@lists.cam.ac.uk phasing http://www-structmed.cimr.cam.ac.uk/phaser/ ? ? 3 REFMAC . ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 4 PDB_EXTRACT 3.11 'April 22, 2011' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 5 XDS . ? ? ? ? 'data reduction' ? ? ? # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 B _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 815 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 B _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 815 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 7_554 _pdbx_validate_symm_contact.dist 1.47 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ALA A 115 ? ? 75.46 -46.38 2 1 ALA B 115 ? ? 72.63 -42.29 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A SER 0 ? OG ? A SER 4 OG 2 1 Y 1 A LYS 61 ? CG ? A LYS 65 CG 3 1 Y 1 A LYS 61 ? CD ? A LYS 65 CD 4 1 Y 1 A LYS 61 ? CE ? A LYS 65 CE 5 1 Y 1 A LYS 61 ? NZ ? A LYS 65 NZ 6 1 Y 1 A LEU 84 ? CG ? A LEU 88 CG 7 1 Y 1 A LEU 84 ? CD1 ? A LEU 88 CD1 8 1 Y 1 A LEU 84 ? CD2 ? A LEU 88 CD2 9 1 Y 1 A LYS 100 ? CG ? A LYS 104 CG 10 1 Y 1 A LYS 100 ? CD ? A LYS 104 CD 11 1 Y 1 A LYS 100 ? CE ? A LYS 104 CE 12 1 Y 1 A LYS 100 ? NZ ? A LYS 104 NZ 13 1 Y 1 B LEU 3 ? CG ? B LEU 7 CG 14 1 Y 1 B LEU 3 ? CD1 ? B LEU 7 CD1 15 1 Y 1 B LEU 3 ? CD2 ? B LEU 7 CD2 16 1 Y 1 B GLU 56 ? CG ? B GLU 60 CG 17 1 Y 1 B GLU 56 ? CD ? B GLU 60 CD 18 1 Y 1 B GLU 56 ? OE1 ? B GLU 60 OE1 19 1 Y 1 B GLU 56 ? OE2 ? B GLU 60 OE2 20 1 Y 1 B ARG 57 ? CG ? B ARG 61 CG 21 1 Y 1 B ARG 57 ? CD ? B ARG 61 CD 22 1 Y 1 B ARG 57 ? NE ? B ARG 61 NE 23 1 Y 1 B ARG 57 ? CZ ? B ARG 61 CZ 24 1 Y 1 B ARG 57 ? NH1 ? B ARG 61 NH1 25 1 Y 1 B ARG 57 ? NH2 ? B ARG 61 NH2 26 1 Y 1 B LYS 61 ? CG ? B LYS 65 CG 27 1 Y 1 B LYS 61 ? CD ? B LYS 65 CD 28 1 Y 1 B LYS 61 ? CE ? B LYS 65 CE 29 1 Y 1 B LYS 61 ? NZ ? B LYS 65 NZ 30 1 Y 1 B LYS 96 ? CG ? B LYS 100 CG 31 1 Y 1 B LYS 96 ? CD ? B LYS 100 CD 32 1 Y 1 B LYS 96 ? CE ? B LYS 100 CE 33 1 Y 1 B LYS 96 ? NZ ? B LYS 100 NZ 34 1 Y 1 B LYS 97 ? CG ? B LYS 101 CG 35 1 Y 1 B LYS 97 ? CD ? B LYS 101 CD 36 1 Y 1 B LYS 97 ? CE ? B LYS 101 CE 37 1 Y 1 B LYS 97 ? NZ ? B LYS 101 NZ 38 1 Y 1 B LYS 100 ? CG ? B LYS 104 CG 39 1 Y 1 B LYS 100 ? CD ? B LYS 104 CD 40 1 Y 1 B LYS 100 ? CE ? B LYS 104 CE 41 1 Y 1 B LYS 100 ? NZ ? B LYS 104 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY -3 ? A GLY 1 2 1 Y 1 A PRO -2 ? A PRO 2 3 1 Y 1 A GLY -1 ? A GLY 3 4 1 Y 1 B GLY -3 ? B GLY 1 5 1 Y 1 B PRO -2 ? B PRO 2 6 1 Y 1 B GLY -1 ? B GLY 3 7 1 Y 1 B SER 0 ? B SER 4 8 1 Y 1 B MET 1 ? B MET 5 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ADP PB P N N 1 ADP O1B O N N 2 ADP O2B O N N 3 ADP O3B O N N 4 ADP PA P N S 5 ADP O1A O N N 6 ADP O2A O N N 7 ADP O3A O N N 8 ADP "O5'" O N N 9 ADP "C5'" C N N 10 ADP "C4'" C N R 11 ADP "O4'" O N N 12 ADP "C3'" C N S 13 ADP "O3'" O N N 14 ADP "C2'" C N R 15 ADP "O2'" O N N 16 ADP "C1'" C N R 17 ADP N9 N Y N 18 ADP C8 C Y N 19 ADP N7 N Y N 20 ADP C5 C Y N 21 ADP C6 C Y N 22 ADP N6 N N N 23 ADP N1 N Y N 24 ADP C2 C Y N 25 ADP N3 N Y N 26 ADP C4 C Y N 27 ADP HOB2 H N N 28 ADP HOB3 H N N 29 ADP HOA2 H N N 30 ADP "H5'1" H N N 31 ADP "H5'2" H N N 32 ADP "H4'" H N N 33 ADP "H3'" H N N 34 ADP "HO3'" H N N 35 ADP "H2'" H N N 36 ADP "HO2'" H N N 37 ADP "H1'" H N N 38 ADP H8 H N N 39 ADP HN61 H N N 40 ADP HN62 H N N 41 ADP H2 H N N 42 ALA N N N N 43 ALA CA C N S 44 ALA C C N N 45 ALA O O N N 46 ALA CB C N N 47 ALA OXT O N N 48 ALA H H N N 49 ALA H2 H N N 50 ALA HA H N N 51 ALA HB1 H N N 52 ALA HB2 H N N 53 ALA HB3 H N N 54 ALA HXT H N N 55 ARG N N N N 56 ARG CA C N S 57 ARG C C N N 58 ARG O O N N 59 ARG CB C N N 60 ARG CG C N N 61 ARG CD C N N 62 ARG NE N N N 63 ARG CZ C N N 64 ARG NH1 N N N 65 ARG NH2 N N N 66 ARG OXT O N N 67 ARG H H N N 68 ARG H2 H N N 69 ARG HA H N N 70 ARG HB2 H N N 71 ARG HB3 H N N 72 ARG HG2 H N N 73 ARG HG3 H N N 74 ARG HD2 H N N 75 ARG HD3 H N N 76 ARG HE H N N 77 ARG HH11 H N N 78 ARG HH12 H N N 79 ARG HH21 H N N 80 ARG HH22 H N N 81 ARG HXT H N N 82 ASN N N N N 83 ASN CA C N S 84 ASN C C N N 85 ASN O O N N 86 ASN CB C N N 87 ASN CG C N N 88 ASN OD1 O N N 89 ASN ND2 N N N 90 ASN OXT O N N 91 ASN H H N N 92 ASN H2 H N N 93 ASN HA H N N 94 ASN HB2 H N N 95 ASN HB3 H N N 96 ASN HD21 H N N 97 ASN HD22 H N N 98 ASN HXT H N N 99 ASP N N N N 100 ASP CA C N S 101 ASP C C N N 102 ASP O O N N 103 ASP CB C N N 104 ASP CG C N N 105 ASP OD1 O N N 106 ASP OD2 O N N 107 ASP OXT O N N 108 ASP H H N N 109 ASP H2 H N N 110 ASP HA H N N 111 ASP HB2 H N N 112 ASP HB3 H N N 113 ASP HD2 H N N 114 ASP HXT H N N 115 GLN N N N N 116 GLN CA C N S 117 GLN C C N N 118 GLN O O N N 119 GLN CB C N N 120 GLN CG C N N 121 GLN CD C N N 122 GLN OE1 O N N 123 GLN NE2 N N N 124 GLN OXT O N N 125 GLN H H N N 126 GLN H2 H N N 127 GLN HA H N N 128 GLN HB2 H N N 129 GLN HB3 H N N 130 GLN HG2 H N N 131 GLN HG3 H N N 132 GLN HE21 H N N 133 GLN HE22 H N N 134 GLN HXT H N N 135 GLU N N N N 136 GLU CA C N S 137 GLU C C N N 138 GLU O O N N 139 GLU CB C N N 140 GLU CG C N N 141 GLU CD C N N 142 GLU OE1 O N N 143 GLU OE2 O N N 144 GLU OXT O N N 145 GLU H H N N 146 GLU H2 H N N 147 GLU HA H N N 148 GLU HB2 H N N 149 GLU HB3 H N N 150 GLU HG2 H N N 151 GLU HG3 H N N 152 GLU HE2 H N N 153 GLU HXT H N N 154 GLY N N N N 155 GLY CA C N N 156 GLY C C N N 157 GLY O O N N 158 GLY OXT O N N 159 GLY H H N N 160 GLY H2 H N N 161 GLY HA2 H N N 162 GLY HA3 H N N 163 GLY HXT H N N 164 HIS N N N N 165 HIS CA C N S 166 HIS C C N N 167 HIS O O N N 168 HIS CB C N N 169 HIS CG C Y N 170 HIS ND1 N Y N 171 HIS CD2 C Y N 172 HIS CE1 C Y N 173 HIS NE2 N Y N 174 HIS OXT O N N 175 HIS H H N N 176 HIS H2 H N N 177 HIS HA H N N 178 HIS HB2 H N N 179 HIS HB3 H N N 180 HIS HD1 H N N 181 HIS HD2 H N N 182 HIS HE1 H N N 183 HIS HE2 H N N 184 HIS HXT H N N 185 HOH O O N N 186 HOH H1 H N N 187 HOH H2 H N N 188 ILE N N N N 189 ILE CA C N S 190 ILE C C N N 191 ILE O O N N 192 ILE CB C N S 193 ILE CG1 C N N 194 ILE CG2 C N N 195 ILE CD1 C N N 196 ILE OXT O N N 197 ILE H H N N 198 ILE H2 H N N 199 ILE HA H N N 200 ILE HB H N N 201 ILE HG12 H N N 202 ILE HG13 H N N 203 ILE HG21 H N N 204 ILE HG22 H N N 205 ILE HG23 H N N 206 ILE HD11 H N N 207 ILE HD12 H N N 208 ILE HD13 H N N 209 ILE HXT H N N 210 LEU N N N N 211 LEU CA C N S 212 LEU C C N N 213 LEU O O N N 214 LEU CB C N N 215 LEU CG C N N 216 LEU CD1 C N N 217 LEU CD2 C N N 218 LEU OXT O N N 219 LEU H H N N 220 LEU H2 H N N 221 LEU HA H N N 222 LEU HB2 H N N 223 LEU HB3 H N N 224 LEU HG H N N 225 LEU HD11 H N N 226 LEU HD12 H N N 227 LEU HD13 H N N 228 LEU HD21 H N N 229 LEU HD22 H N N 230 LEU HD23 H N N 231 LEU HXT H N N 232 LYS N N N N 233 LYS CA C N S 234 LYS C C N N 235 LYS O O N N 236 LYS CB C N N 237 LYS CG C N N 238 LYS CD C N N 239 LYS CE C N N 240 LYS NZ N N N 241 LYS OXT O N N 242 LYS H H N N 243 LYS H2 H N N 244 LYS HA H N N 245 LYS HB2 H N N 246 LYS HB3 H N N 247 LYS HG2 H N N 248 LYS HG3 H N N 249 LYS HD2 H N N 250 LYS HD3 H N N 251 LYS HE2 H N N 252 LYS HE3 H N N 253 LYS HZ1 H N N 254 LYS HZ2 H N N 255 LYS HZ3 H N N 256 LYS HXT H N N 257 MET N N N N 258 MET CA C N S 259 MET C C N N 260 MET O O N N 261 MET CB C N N 262 MET CG C N N 263 MET SD S N N 264 MET CE C N N 265 MET OXT O N N 266 MET H H N N 267 MET H2 H N N 268 MET HA H N N 269 MET HB2 H N N 270 MET HB3 H N N 271 MET HG2 H N N 272 MET HG3 H N N 273 MET HE1 H N N 274 MET HE2 H N N 275 MET HE3 H N N 276 MET HXT H N N 277 PHE N N N N 278 PHE CA C N S 279 PHE C C N N 280 PHE O O N N 281 PHE CB C N N 282 PHE CG C Y N 283 PHE CD1 C Y N 284 PHE CD2 C Y N 285 PHE CE1 C Y N 286 PHE CE2 C Y N 287 PHE CZ C Y N 288 PHE OXT O N N 289 PHE H H N N 290 PHE H2 H N N 291 PHE HA H N N 292 PHE HB2 H N N 293 PHE HB3 H N N 294 PHE HD1 H N N 295 PHE HD2 H N N 296 PHE HE1 H N N 297 PHE HE2 H N N 298 PHE HZ H N N 299 PHE HXT H N N 300 PRO N N N N 301 PRO CA C N S 302 PRO C C N N 303 PRO O O N N 304 PRO CB C N N 305 PRO CG C N N 306 PRO CD C N N 307 PRO OXT O N N 308 PRO H H N N 309 PRO HA H N N 310 PRO HB2 H N N 311 PRO HB3 H N N 312 PRO HG2 H N N 313 PRO HG3 H N N 314 PRO HD2 H N N 315 PRO HD3 H N N 316 PRO HXT H N N 317 SER N N N N 318 SER CA C N S 319 SER C C N N 320 SER O O N N 321 SER CB C N N 322 SER OG O N N 323 SER OXT O N N 324 SER H H N N 325 SER H2 H N N 326 SER HA H N N 327 SER HB2 H N N 328 SER HB3 H N N 329 SER HG H N N 330 SER HXT H N N 331 THR N N N N 332 THR CA C N S 333 THR C C N N 334 THR O O N N 335 THR CB C N R 336 THR OG1 O N N 337 THR CG2 C N N 338 THR OXT O N N 339 THR H H N N 340 THR H2 H N N 341 THR HA H N N 342 THR HB H N N 343 THR HG1 H N N 344 THR HG21 H N N 345 THR HG22 H N N 346 THR HG23 H N N 347 THR HXT H N N 348 TYR N N N N 349 TYR CA C N S 350 TYR C C N N 351 TYR O O N N 352 TYR CB C N N 353 TYR CG C Y N 354 TYR CD1 C Y N 355 TYR CD2 C Y N 356 TYR CE1 C Y N 357 TYR CE2 C Y N 358 TYR CZ C Y N 359 TYR OH O N N 360 TYR OXT O N N 361 TYR H H N N 362 TYR H2 H N N 363 TYR HA H N N 364 TYR HB2 H N N 365 TYR HB3 H N N 366 TYR HD1 H N N 367 TYR HD2 H N N 368 TYR HE1 H N N 369 TYR HE2 H N N 370 TYR HH H N N 371 TYR HXT H N N 372 VAL N N N N 373 VAL CA C N S 374 VAL C C N N 375 VAL O O N N 376 VAL CB C N N 377 VAL CG1 C N N 378 VAL CG2 C N N 379 VAL OXT O N N 380 VAL H H N N 381 VAL H2 H N N 382 VAL HA H N N 383 VAL HB H N N 384 VAL HG11 H N N 385 VAL HG12 H N N 386 VAL HG13 H N N 387 VAL HG21 H N N 388 VAL HG22 H N N 389 VAL HG23 H N N 390 VAL HXT H N N 391 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ADP PB O1B doub N N 1 ADP PB O2B sing N N 2 ADP PB O3B sing N N 3 ADP PB O3A sing N N 4 ADP O2B HOB2 sing N N 5 ADP O3B HOB3 sing N N 6 ADP PA O1A doub N N 7 ADP PA O2A sing N N 8 ADP PA O3A sing N N 9 ADP PA "O5'" sing N N 10 ADP O2A HOA2 sing N N 11 ADP "O5'" "C5'" sing N N 12 ADP "C5'" "C4'" sing N N 13 ADP "C5'" "H5'1" sing N N 14 ADP "C5'" "H5'2" sing N N 15 ADP "C4'" "O4'" sing N N 16 ADP "C4'" "C3'" sing N N 17 ADP "C4'" "H4'" sing N N 18 ADP "O4'" "C1'" sing N N 19 ADP "C3'" "O3'" sing N N 20 ADP "C3'" "C2'" sing N N 21 ADP "C3'" "H3'" sing N N 22 ADP "O3'" "HO3'" sing N N 23 ADP "C2'" "O2'" sing N N 24 ADP "C2'" "C1'" sing N N 25 ADP "C2'" "H2'" sing N N 26 ADP "O2'" "HO2'" sing N N 27 ADP "C1'" N9 sing N N 28 ADP "C1'" "H1'" sing N N 29 ADP N9 C8 sing Y N 30 ADP N9 C4 sing Y N 31 ADP C8 N7 doub Y N 32 ADP C8 H8 sing N N 33 ADP N7 C5 sing Y N 34 ADP C5 C6 sing Y N 35 ADP C5 C4 doub Y N 36 ADP C6 N6 sing N N 37 ADP C6 N1 doub Y N 38 ADP N6 HN61 sing N N 39 ADP N6 HN62 sing N N 40 ADP N1 C2 sing Y N 41 ADP C2 N3 doub Y N 42 ADP C2 H2 sing N N 43 ADP N3 C4 sing Y N 44 ALA N CA sing N N 45 ALA N H sing N N 46 ALA N H2 sing N N 47 ALA CA C sing N N 48 ALA CA CB sing N N 49 ALA CA HA sing N N 50 ALA C O doub N N 51 ALA C OXT sing N N 52 ALA CB HB1 sing N N 53 ALA CB HB2 sing N N 54 ALA CB HB3 sing N N 55 ALA OXT HXT sing N N 56 ARG N CA sing N N 57 ARG N H sing N N 58 ARG N H2 sing N N 59 ARG CA C sing N N 60 ARG CA CB sing N N 61 ARG CA HA sing N N 62 ARG C O doub N N 63 ARG C OXT sing N N 64 ARG CB CG sing N N 65 ARG CB HB2 sing N N 66 ARG CB HB3 sing N N 67 ARG CG CD sing N N 68 ARG CG HG2 sing N N 69 ARG CG HG3 sing N N 70 ARG CD NE sing N N 71 ARG CD HD2 sing N N 72 ARG CD HD3 sing N N 73 ARG NE CZ sing N N 74 ARG NE HE sing N N 75 ARG CZ NH1 sing N N 76 ARG CZ NH2 doub N N 77 ARG NH1 HH11 sing N N 78 ARG NH1 HH12 sing N N 79 ARG NH2 HH21 sing N N 80 ARG NH2 HH22 sing N N 81 ARG OXT HXT sing N N 82 ASN N CA sing N N 83 ASN N H sing N N 84 ASN N H2 sing N N 85 ASN CA C sing N N 86 ASN CA CB sing N N 87 ASN CA HA sing N N 88 ASN C O doub N N 89 ASN C OXT sing N N 90 ASN CB CG sing N N 91 ASN CB HB2 sing N N 92 ASN CB HB3 sing N N 93 ASN CG OD1 doub N N 94 ASN CG ND2 sing N N 95 ASN ND2 HD21 sing N N 96 ASN ND2 HD22 sing N N 97 ASN OXT HXT sing N N 98 ASP N CA sing N N 99 ASP N H sing N N 100 ASP N H2 sing N N 101 ASP CA C sing N N 102 ASP CA CB sing N N 103 ASP CA HA sing N N 104 ASP C O doub N N 105 ASP C OXT sing N N 106 ASP CB CG sing N N 107 ASP CB HB2 sing N N 108 ASP CB HB3 sing N N 109 ASP CG OD1 doub N N 110 ASP CG OD2 sing N N 111 ASP OD2 HD2 sing N N 112 ASP OXT HXT sing N N 113 GLN N CA sing N N 114 GLN N H sing N N 115 GLN N H2 sing N N 116 GLN CA C sing N N 117 GLN CA CB sing N N 118 GLN CA HA sing N N 119 GLN C O doub N N 120 GLN C OXT sing N N 121 GLN CB CG sing N N 122 GLN CB HB2 sing N N 123 GLN CB HB3 sing N N 124 GLN CG CD sing N N 125 GLN CG HG2 sing N N 126 GLN CG HG3 sing N N 127 GLN CD OE1 doub N N 128 GLN CD NE2 sing N N 129 GLN NE2 HE21 sing N N 130 GLN NE2 HE22 sing N N 131 GLN OXT HXT sing N N 132 GLU N CA sing N N 133 GLU N H sing N N 134 GLU N H2 sing N N 135 GLU CA C sing N N 136 GLU CA CB sing N N 137 GLU CA HA sing N N 138 GLU C O doub N N 139 GLU C OXT sing N N 140 GLU CB CG sing N N 141 GLU CB HB2 sing N N 142 GLU CB HB3 sing N N 143 GLU CG CD sing N N 144 GLU CG HG2 sing N N 145 GLU CG HG3 sing N N 146 GLU CD OE1 doub N N 147 GLU CD OE2 sing N N 148 GLU OE2 HE2 sing N N 149 GLU OXT HXT sing N N 150 GLY N CA sing N N 151 GLY N H sing N N 152 GLY N H2 sing N N 153 GLY CA C sing N N 154 GLY CA HA2 sing N N 155 GLY CA HA3 sing N N 156 GLY C O doub N N 157 GLY C OXT sing N N 158 GLY OXT HXT sing N N 159 HIS N CA sing N N 160 HIS N H sing N N 161 HIS N H2 sing N N 162 HIS CA C sing N N 163 HIS CA CB sing N N 164 HIS CA HA sing N N 165 HIS C O doub N N 166 HIS C OXT sing N N 167 HIS CB CG sing N N 168 HIS CB HB2 sing N N 169 HIS CB HB3 sing N N 170 HIS CG ND1 sing Y N 171 HIS CG CD2 doub Y N 172 HIS ND1 CE1 doub Y N 173 HIS ND1 HD1 sing N N 174 HIS CD2 NE2 sing Y N 175 HIS CD2 HD2 sing N N 176 HIS CE1 NE2 sing Y N 177 HIS CE1 HE1 sing N N 178 HIS NE2 HE2 sing N N 179 HIS OXT HXT sing N N 180 HOH O H1 sing N N 181 HOH O H2 sing N N 182 ILE N CA sing N N 183 ILE N H sing N N 184 ILE N H2 sing N N 185 ILE CA C sing N N 186 ILE CA CB sing N N 187 ILE CA HA sing N N 188 ILE C O doub N N 189 ILE C OXT sing N N 190 ILE CB CG1 sing N N 191 ILE CB CG2 sing N N 192 ILE CB HB sing N N 193 ILE CG1 CD1 sing N N 194 ILE CG1 HG12 sing N N 195 ILE CG1 HG13 sing N N 196 ILE CG2 HG21 sing N N 197 ILE CG2 HG22 sing N N 198 ILE CG2 HG23 sing N N 199 ILE CD1 HD11 sing N N 200 ILE CD1 HD12 sing N N 201 ILE CD1 HD13 sing N N 202 ILE OXT HXT sing N N 203 LEU N CA sing N N 204 LEU N H sing N N 205 LEU N H2 sing N N 206 LEU CA C sing N N 207 LEU CA CB sing N N 208 LEU CA HA sing N N 209 LEU C O doub N N 210 LEU C OXT sing N N 211 LEU CB CG sing N N 212 LEU CB HB2 sing N N 213 LEU CB HB3 sing N N 214 LEU CG CD1 sing N N 215 LEU CG CD2 sing N N 216 LEU CG HG sing N N 217 LEU CD1 HD11 sing N N 218 LEU CD1 HD12 sing N N 219 LEU CD1 HD13 sing N N 220 LEU CD2 HD21 sing N N 221 LEU CD2 HD22 sing N N 222 LEU CD2 HD23 sing N N 223 LEU OXT HXT sing N N 224 LYS N CA sing N N 225 LYS N H sing N N 226 LYS N H2 sing N N 227 LYS CA C sing N N 228 LYS CA CB sing N N 229 LYS CA HA sing N N 230 LYS C O doub N N 231 LYS C OXT sing N N 232 LYS CB CG sing N N 233 LYS CB HB2 sing N N 234 LYS CB HB3 sing N N 235 LYS CG CD sing N N 236 LYS CG HG2 sing N N 237 LYS CG HG3 sing N N 238 LYS CD CE sing N N 239 LYS CD HD2 sing N N 240 LYS CD HD3 sing N N 241 LYS CE NZ sing N N 242 LYS CE HE2 sing N N 243 LYS CE HE3 sing N N 244 LYS NZ HZ1 sing N N 245 LYS NZ HZ2 sing N N 246 LYS NZ HZ3 sing N N 247 LYS OXT HXT sing N N 248 MET N CA sing N N 249 MET N H sing N N 250 MET N H2 sing N N 251 MET CA C sing N N 252 MET CA CB sing N N 253 MET CA HA sing N N 254 MET C O doub N N 255 MET C OXT sing N N 256 MET CB CG sing N N 257 MET CB HB2 sing N N 258 MET CB HB3 sing N N 259 MET CG SD sing N N 260 MET CG HG2 sing N N 261 MET CG HG3 sing N N 262 MET SD CE sing N N 263 MET CE HE1 sing N N 264 MET CE HE2 sing N N 265 MET CE HE3 sing N N 266 MET OXT HXT sing N N 267 PHE N CA sing N N 268 PHE N H sing N N 269 PHE N H2 sing N N 270 PHE CA C sing N N 271 PHE CA CB sing N N 272 PHE CA HA sing N N 273 PHE C O doub N N 274 PHE C OXT sing N N 275 PHE CB CG sing N N 276 PHE CB HB2 sing N N 277 PHE CB HB3 sing N N 278 PHE CG CD1 doub Y N 279 PHE CG CD2 sing Y N 280 PHE CD1 CE1 sing Y N 281 PHE CD1 HD1 sing N N 282 PHE CD2 CE2 doub Y N 283 PHE CD2 HD2 sing N N 284 PHE CE1 CZ doub Y N 285 PHE CE1 HE1 sing N N 286 PHE CE2 CZ sing Y N 287 PHE CE2 HE2 sing N N 288 PHE CZ HZ sing N N 289 PHE OXT HXT sing N N 290 PRO N CA sing N N 291 PRO N CD sing N N 292 PRO N H sing N N 293 PRO CA C sing N N 294 PRO CA CB sing N N 295 PRO CA HA sing N N 296 PRO C O doub N N 297 PRO C OXT sing N N 298 PRO CB CG sing N N 299 PRO CB HB2 sing N N 300 PRO CB HB3 sing N N 301 PRO CG CD sing N N 302 PRO CG HG2 sing N N 303 PRO CG HG3 sing N N 304 PRO CD HD2 sing N N 305 PRO CD HD3 sing N N 306 PRO OXT HXT sing N N 307 SER N CA sing N N 308 SER N H sing N N 309 SER N H2 sing N N 310 SER CA C sing N N 311 SER CA CB sing N N 312 SER CA HA sing N N 313 SER C O doub N N 314 SER C OXT sing N N 315 SER CB OG sing N N 316 SER CB HB2 sing N N 317 SER CB HB3 sing N N 318 SER OG HG sing N N 319 SER OXT HXT sing N N 320 THR N CA sing N N 321 THR N H sing N N 322 THR N H2 sing N N 323 THR CA C sing N N 324 THR CA CB sing N N 325 THR CA HA sing N N 326 THR C O doub N N 327 THR C OXT sing N N 328 THR CB OG1 sing N N 329 THR CB CG2 sing N N 330 THR CB HB sing N N 331 THR OG1 HG1 sing N N 332 THR CG2 HG21 sing N N 333 THR CG2 HG22 sing N N 334 THR CG2 HG23 sing N N 335 THR OXT HXT sing N N 336 TYR N CA sing N N 337 TYR N H sing N N 338 TYR N H2 sing N N 339 TYR CA C sing N N 340 TYR CA CB sing N N 341 TYR CA HA sing N N 342 TYR C O doub N N 343 TYR C OXT sing N N 344 TYR CB CG sing N N 345 TYR CB HB2 sing N N 346 TYR CB HB3 sing N N 347 TYR CG CD1 doub Y N 348 TYR CG CD2 sing Y N 349 TYR CD1 CE1 sing Y N 350 TYR CD1 HD1 sing N N 351 TYR CD2 CE2 doub Y N 352 TYR CD2 HD2 sing N N 353 TYR CE1 CZ doub Y N 354 TYR CE1 HE1 sing N N 355 TYR CE2 CZ sing Y N 356 TYR CE2 HE2 sing N N 357 TYR CZ OH sing N N 358 TYR OH HH sing N N 359 TYR OXT HXT sing N N 360 VAL N CA sing N N 361 VAL N H sing N N 362 VAL N H2 sing N N 363 VAL CA C sing N N 364 VAL CA CB sing N N 365 VAL CA HA sing N N 366 VAL C O doub N N 367 VAL C OXT sing N N 368 VAL CB CG1 sing N N 369 VAL CB CG2 sing N N 370 VAL CB HB sing N N 371 VAL CG1 HG11 sing N N 372 VAL CG1 HG12 sing N N 373 VAL CG1 HG13 sing N N 374 VAL CG2 HG21 sing N N 375 VAL CG2 HG22 sing N N 376 VAL CG2 HG23 sing N N 377 VAL OXT HXT sing N N 378 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 "ADENOSINE-5'-DIPHOSPHATE" ADP 3 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 4EK2 _pdbx_initial_refinement_model.details 'PDB ENTRY 4EK2' #