data_4HT4 # _entry.id 4HT4 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.287 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4HT4 NDB NA2120 RCSB RCSB075887 WWPDB D_1000075887 # _pdbx_database_status.entry_id 4HT4 _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2012-10-31 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _audit_author.name 'Edwards, J.S.' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Molecular basis of antibiotic multiresistance transfer in Staphylococcus aureus.' _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_volume 110 _citation.page_first 2804 _citation.page_last 2809 _citation.year 2013 _citation.journal_id_ASTM PNASA6 _citation.country US _citation.journal_id_ISSN 0027-8424 _citation.journal_id_CSD 0040 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23359708 _citation.pdbx_database_id_DOI 10.1073/pnas.1219701110 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Edwards, J.S.' 1 primary 'Betts, L.' 2 primary 'Frazier, M.L.' 3 primary 'Pollet, R.M.' 4 primary 'Kwong, S.M.' 5 primary 'Walton, W.G.' 6 primary 'Ballentine, W.K.' 7 primary 'Huang, J.J.' 8 primary 'Habibi, S.' 9 primary 'Del Campo, M.' 10 primary 'Meier, J.L.' 11 primary 'Dervan, P.B.' 12 primary 'Firth, N.' 13 primary 'Redinbo, M.R.' 14 # _cell.length_a 63.226 _cell.length_b 63.226 _cell.length_c 313.756 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.entry_id 4HT4 _cell.pdbx_unique_axis ? _cell.Z_PDB 12 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 64 2 2' _symmetry.entry_id 4HT4 _symmetry.Int_Tables_number 181 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Nicking enzyme' 23069.264 1 ? F25Y ? ? 2 polymer syn 'DNA (28-MER)' 8640.568 1 ? ? ? 'oriT DNA hairpin' 3 non-polymer syn 'NICKEL (II) ION' 58.693 1 ? ? ? ? 4 non-polymer syn 'CALCIUM ION' 40.078 8 ? ? ? ? 5 non-polymer syn 'CHLORIDE ION' 35.453 1 ? ? ? ? 6 water nat water 18.015 19 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no yes ;A(MSE)YHFQNKFVSKANGQSATAKSAFNSASRIKDFKENEFKDYSNKQCDYSEILLPNNADDKFKDREYLWNKVHDVEN RKNSQVAREIIIGLPNEFDPNSNIELAKEFAESLSNEG(MSE)IVDLNIHKINEENPHAHLLCTLRGLDKNNEFEPKRKG NDYIRDWNTKEKHNEWRKRWENVQNKHLEKNGFSVRVSADSYL ; ;AMYHFQNKFVSKANGQSATAKSAFNSASRIKDFKENEFKDYSNKQCDYSEILLPNNADDKFKDREYLWNKVHDVENRKNS QVAREIIIGLPNEFDPNSNIELAKEFAESLSNEGMIVDLNIHKINEENPHAHLLCTLRGLDKNNEFEPKRKGNDYIRDWN TKEKHNEWRKRWENVQNKHLEKNGFSVRVSADSYL ; A ? 2 polydeoxyribonucleotide no no ;(DC)(DG)(DC)(DG)(DA)(DA)(DC)(DG)(DG)(DA)(DA)(DC)(DG)(DT)(DT)(DC)(DG)(DC)(DA)(DT) (DA)(DA)(DG)(DT)(DG)(DC)(DG)(DC) ; CGCGAACGGAACGTTCGCATAAGTGCGC B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 MSE n 1 3 TYR n 1 4 HIS n 1 5 PHE n 1 6 GLN n 1 7 ASN n 1 8 LYS n 1 9 PHE n 1 10 VAL n 1 11 SER n 1 12 LYS n 1 13 ALA n 1 14 ASN n 1 15 GLY n 1 16 GLN n 1 17 SER n 1 18 ALA n 1 19 THR n 1 20 ALA n 1 21 LYS n 1 22 SER n 1 23 ALA n 1 24 PHE n 1 25 ASN n 1 26 SER n 1 27 ALA n 1 28 SER n 1 29 ARG n 1 30 ILE n 1 31 LYS n 1 32 ASP n 1 33 PHE n 1 34 LYS n 1 35 GLU n 1 36 ASN n 1 37 GLU n 1 38 PHE n 1 39 LYS n 1 40 ASP n 1 41 TYR n 1 42 SER n 1 43 ASN n 1 44 LYS n 1 45 GLN n 1 46 CYS n 1 47 ASP n 1 48 TYR n 1 49 SER n 1 50 GLU n 1 51 ILE n 1 52 LEU n 1 53 LEU n 1 54 PRO n 1 55 ASN n 1 56 ASN n 1 57 ALA n 1 58 ASP n 1 59 ASP n 1 60 LYS n 1 61 PHE n 1 62 LYS n 1 63 ASP n 1 64 ARG n 1 65 GLU n 1 66 TYR n 1 67 LEU n 1 68 TRP n 1 69 ASN n 1 70 LYS n 1 71 VAL n 1 72 HIS n 1 73 ASP n 1 74 VAL n 1 75 GLU n 1 76 ASN n 1 77 ARG n 1 78 LYS n 1 79 ASN n 1 80 SER n 1 81 GLN n 1 82 VAL n 1 83 ALA n 1 84 ARG n 1 85 GLU n 1 86 ILE n 1 87 ILE n 1 88 ILE n 1 89 GLY n 1 90 LEU n 1 91 PRO n 1 92 ASN n 1 93 GLU n 1 94 PHE n 1 95 ASP n 1 96 PRO n 1 97 ASN n 1 98 SER n 1 99 ASN n 1 100 ILE n 1 101 GLU n 1 102 LEU n 1 103 ALA n 1 104 LYS n 1 105 GLU n 1 106 PHE n 1 107 ALA n 1 108 GLU n 1 109 SER n 1 110 LEU n 1 111 SER n 1 112 ASN n 1 113 GLU n 1 114 GLY n 1 115 MSE n 1 116 ILE n 1 117 VAL n 1 118 ASP n 1 119 LEU n 1 120 ASN n 1 121 ILE n 1 122 HIS n 1 123 LYS n 1 124 ILE n 1 125 ASN n 1 126 GLU n 1 127 GLU n 1 128 ASN n 1 129 PRO n 1 130 HIS n 1 131 ALA n 1 132 HIS n 1 133 LEU n 1 134 LEU n 1 135 CYS n 1 136 THR n 1 137 LEU n 1 138 ARG n 1 139 GLY n 1 140 LEU n 1 141 ASP n 1 142 LYS n 1 143 ASN n 1 144 ASN n 1 145 GLU n 1 146 PHE n 1 147 GLU n 1 148 PRO n 1 149 LYS n 1 150 ARG n 1 151 LYS n 1 152 GLY n 1 153 ASN n 1 154 ASP n 1 155 TYR n 1 156 ILE n 1 157 ARG n 1 158 ASP n 1 159 TRP n 1 160 ASN n 1 161 THR n 1 162 LYS n 1 163 GLU n 1 164 LYS n 1 165 HIS n 1 166 ASN n 1 167 GLU n 1 168 TRP n 1 169 ARG n 1 170 LYS n 1 171 ARG n 1 172 TRP n 1 173 GLU n 1 174 ASN n 1 175 VAL n 1 176 GLN n 1 177 ASN n 1 178 LYS n 1 179 HIS n 1 180 LEU n 1 181 GLU n 1 182 LYS n 1 183 ASN n 1 184 GLY n 1 185 PHE n 1 186 SER n 1 187 VAL n 1 188 ARG n 1 189 VAL n 1 190 SER n 1 191 ALA n 1 192 ASP n 1 193 SER n 1 194 TYR n 1 195 LEU n 2 1 DC n 2 2 DG n 2 3 DC n 2 4 DG n 2 5 DA n 2 6 DA n 2 7 DC n 2 8 DG n 2 9 DG n 2 10 DA n 2 11 DA n 2 12 DC n 2 13 DG n 2 14 DT n 2 15 DT n 2 16 DC n 2 17 DG n 2 18 DC n 2 19 DA n 2 20 DT n 2 21 DA n 2 22 DA n 2 23 DG n 2 24 DT n 2 25 DG n 2 26 DC n 2 27 DG n 2 28 DC n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'nes, NES from pLW1043' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Staphylococcus aureus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1280 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 511693 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21 AI' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pCPD-lasso _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP Q53632_STAAU Q53632 1 ;AMYHFQNKFVSKANGQSATAKSAYNSASRIKDFKENEFKDYSNKQCDYSEILLPNNADDKFKDREYLWNKVHDVENRKNS QVAREIIIGLPNEFDPNSNIELAKEFAESLSNEGMIVDLNIHKINEENPHAHLLCTLRGLDKNNEFEPKRKGNDYIRDWN TKEKHNEWRKRWENVQNKHLEKNGFSVRVSADSY ; 2 ? 2 PDB 4HT4 4HT4 2 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4HT4 A 1 ? 194 ? Q53632 2 ? 195 ? 2 195 2 2 4HT4 B 1 ? 28 ? 4HT4 2 ? 29 ? 2 29 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4HT4 PHE A 24 ? UNP Q53632 TYR 25 'ENGINEERED MUTATION' 25 1 1 4HT4 LEU A 195 ? UNP Q53632 ? ? 'EXPRESSION TAG' 196 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 NI non-polymer . 'NICKEL (II) ION' ? 'Ni 2' 58.693 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4HT4 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.85 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 56.91 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.temp 293 _exptl_crystal_grow.pdbx_details ;16% PEG 8,000, 120 mM calcium acetate, 80 mM sodium cacolydate, and 20% glycerol v/v , pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K ; _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 300 mm CCD' _diffrn_detector.pdbx_collection_date 2011-06 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH ANOMALOUS' _diffrn_radiation.monochromator ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9795 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 23-ID-D' _diffrn_source.pdbx_wavelength_list 0.9795 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 23-ID-D # _reflns.entry_id 4HT4 _reflns.d_resolution_high 2.900 _reflns.d_resolution_low 100.000 _reflns.number_obs 8865 _reflns.pdbx_Rmerge_I_obs 0.097 _reflns.pdbx_netI_over_sigmaI 11.400 _reflns.pdbx_chi_squared 2.150 _reflns.pdbx_redundancy 20.300 _reflns.percent_possible_obs 97.700 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2.900 2.950 ? ? ? 0.261 ? ? 1.020 13.200 ? 345 79.700 1 1 2.950 3.000 ? ? ? 0.260 ? ? 1.027 13.700 ? 385 88.100 2 1 3.000 3.060 ? ? ? 0.211 ? ? 1.043 14.900 ? 397 95.900 3 1 3.060 3.120 ? ? ? 0.256 ? ? 1.013 16.400 ? 446 99.600 4 1 3.120 3.190 ? ? ? 0.214 ? ? 1.029 18.100 ? 434 99.500 5 1 3.190 3.270 ? ? ? 0.229 ? ? 1.059 21.500 ? 424 99.500 6 1 3.270 3.350 ? ? ? 0.179 ? ? 1.136 22.800 ? 443 99.800 7 1 3.350 3.440 ? ? ? 0.157 ? ? 1.203 23.000 ? 429 99.500 8 1 3.440 3.540 ? ? ? 0.137 ? ? 1.248 22.800 ? 446 99.600 9 1 3.540 3.650 ? ? ? 0.133 ? ? 1.424 22.900 ? 438 99.500 10 1 3.650 3.780 ? ? ? 0.127 ? ? 1.668 23.000 ? 436 99.300 11 1 3.780 3.940 ? ? ? 0.103 ? ? 1.726 22.100 ? 459 99.400 12 1 3.940 4.110 ? ? ? 0.084 ? ? 1.871 22.600 ? 428 99.800 13 1 4.110 4.330 ? ? ? 0.083 ? ? 1.972 22.100 ? 445 99.300 14 1 4.330 4.600 ? ? ? 0.077 ? ? 2.203 21.400 ? 464 100.000 15 1 4.600 4.960 ? ? ? 0.076 ? ? 2.529 21.800 ? 460 99.600 16 1 4.960 5.460 ? ? ? 0.079 ? ? 3.008 21.400 ? 462 99.100 17 1 5.460 6.250 ? ? ? 0.078 ? ? 3.455 21.100 ? 477 100.000 18 1 6.250 7.870 ? ? ? 0.075 ? ? 4.815 20.300 ? 500 99.200 19 1 7.870 100.000 ? ? ? 0.067 ? ? 6.453 17.500 ? 547 96.000 20 1 # _refine.entry_id 4HT4 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_d_res_high 2.9070 _refine.ls_d_res_low 48.5090 _refine.pdbx_ls_sigma_F 1.340 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 97.3100 _refine.ls_number_reflns_obs 8763 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method ? _refine.ls_matrix_type ? _refine.pdbx_R_Free_selection_details ? _refine.details ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2322 _refine.ls_R_factor_R_work 0.2294 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2864 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 4.7000 _refine.ls_number_reflns_R_free 412 _refine.ls_number_reflns_R_work 8351 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 75.7740 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.3300 _refine.overall_SU_B ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set 0.7129 _refine.B_iso_max 148.360 _refine.B_iso_min 27.620 _refine.pdbx_overall_phase_error 32.1100 _refine.occupancy_max 1.000 _refine.occupancy_min 0.000 _refine.pdbx_diffrn_id 1 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_TLS_residual_ADP_flag ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1557 _refine_hist.pdbx_number_atoms_nucleic_acid 577 _refine_hist.pdbx_number_atoms_ligand 10 _refine_hist.number_atoms_solvent 19 _refine_hist.number_atoms_total 2163 _refine_hist.d_res_high 2.9070 _refine_hist.d_res_low 48.5090 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' f_bond_d 2244 0.003 ? ? ? 'X-RAY DIFFRACTION' f_angle_d 3157 0.738 ? ? ? 'X-RAY DIFFRACTION' f_chiral_restr 333 0.050 ? ? ? 'X-RAY DIFFRACTION' f_plane_restr 318 0.002 ? ? ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 860 22.969 ? ? ? # loop_ _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.percent_reflns_obs _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_R_work _refine_ls_shell.R_factor_R_free _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.pdbx_refine_id _refine_ls_shell.redundancy_reflns_obs 2.9074 3.3280 3 93.0000 2567 . 0.2743 0.3947 . 129 . 2696 . 'X-RAY DIFFRACTION' . 3.3280 4.1926 3 99.0000 2768 . 0.2318 0.3336 . 128 . 2896 . 'X-RAY DIFFRACTION' . 4.1926 48.5160 3 100.0000 3016 . 0.2167 0.2429 . 155 . 3171 . 'X-RAY DIFFRACTION' . # _struct.entry_id 4HT4 _struct.title 'Molecular Basis of Vancomycin Resistance Transfer in Staphylococcus aureus' _struct.pdbx_descriptor 'Nicking enzyme, dna' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4HT4 _struct_keywords.text 'vancomycin resistance plasmid, DNA relaxase, S. aureus, conjugative transfer, DNA hairpin, Hydrolase-DNA complex' _struct_keywords.pdbx_keywords Hydrolase/DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 4 ? G N N 4 ? H N N 5 ? I N N 4 ? J N N 4 ? K N N 4 ? L N N 4 ? M N N 6 ? N N N 6 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ALA A 13 ? GLY A 15 ? ALA A 14 GLY A 16 5 ? 3 HELX_P HELX_P2 2 SER A 17 ? ALA A 27 ? SER A 18 ALA A 28 1 ? 11 HELX_P HELX_P3 3 ASP A 58 ? LYS A 62 ? ASP A 59 LYS A 63 5 ? 5 HELX_P HELX_P4 4 ASP A 63 ? GLU A 75 ? ASP A 64 GLU A 76 1 ? 13 HELX_P HELX_P5 5 ASP A 95 ? SER A 109 ? ASP A 96 SER A 110 1 ? 15 HELX_P HELX_P6 6 THR A 161 ? ASN A 183 ? THR A 162 ASN A 184 1 ? 23 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A ALA 1 C ? ? ? 1_555 A MSE 2 N ? ? A ALA 2 A MSE 3 1_555 ? ? ? ? ? ? ? 1.330 ? covale2 covale ? ? A MSE 2 C ? ? ? 1_555 A TYR 3 N ? ? A MSE 3 A TYR 4 1_555 ? ? ? ? ? ? ? 1.330 ? covale3 covale ? ? A GLY 114 C ? ? ? 1_555 A MSE 115 N ? ? A GLY 115 A MSE 116 1_555 ? ? ? ? ? ? ? 1.328 ? covale4 covale ? ? A MSE 115 C ? ? ? 1_555 A ILE 116 N ? ? A MSE 116 A ILE 117 1_555 ? ? ? ? ? ? ? 1.328 ? metalc1 metalc ? ? A HIS 130 NE2 ? ? ? 1_555 C NI . NI ? ? A HIS 131 A NI 201 1_555 ? ? ? ? ? ? ? 1.969 ? metalc2 metalc ? ? A HIS 132 NE2 ? ? ? 1_555 C NI . NI ? ? A HIS 133 A NI 201 1_555 ? ? ? ? ? ? ? 1.983 ? metalc3 metalc ? ? A HIS 122 ND1 ? ? ? 1_555 C NI . NI ? ? A HIS 123 A NI 201 1_555 ? ? ? ? ? ? ? 2.013 ? metalc4 metalc ? ? B DG 8 OP2 ? ? ? 1_555 I CA . CA ? ? B DG 9 B CA 101 1_555 ? ? ? ? ? ? ? 2.587 ? metalc5 metalc ? ? B DG 9 O6 ? ? ? 1_555 I CA . CA ? ? B DG 10 B CA 101 1_555 ? ? ? ? ? ? ? 2.667 ? metalc6 metalc ? ? C NI . NI ? ? ? 1_555 M HOH . O ? ? A NI 201 A HOH 309 1_555 ? ? ? ? ? ? ? 1.964 ? metalc7 metalc ? ? C NI . NI ? ? ? 1_555 M HOH . O ? ? A NI 201 A HOH 310 1_555 ? ? ? ? ? ? ? 1.970 ? metalc8 metalc ? ? G CA . CA ? ? ? 1_555 N HOH . O ? ? A CA 205 B HOH 204 1_555 ? ? ? ? ? ? ? 2.535 ? metalc9 metalc ? ? I CA . CA ? ? ? 1_555 N HOH . O ? ? B CA 101 B HOH 203 1_555 ? ? ? ? ? ? ? 2.593 ? hydrog1 hydrog ? ? B DG 2 N1 ? ? ? 1_555 B DC 18 N3 ? ? B DG 3 B DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog2 hydrog ? ? B DG 2 N2 ? ? ? 1_555 B DC 18 O2 ? ? B DG 3 B DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog3 hydrog ? ? B DG 2 O6 ? ? ? 1_555 B DC 18 N4 ? ? B DG 3 B DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog4 hydrog ? ? B DC 3 N3 ? ? ? 1_555 B DG 17 N1 ? ? B DC 4 B DG 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog5 hydrog ? ? B DC 3 N4 ? ? ? 1_555 B DG 17 O6 ? ? B DC 4 B DG 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog6 hydrog ? ? B DC 3 O2 ? ? ? 1_555 B DG 17 N2 ? ? B DC 4 B DG 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog7 hydrog ? ? B DG 4 N1 ? ? ? 1_555 B DC 16 N3 ? ? B DG 5 B DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog8 hydrog ? ? B DG 4 N2 ? ? ? 1_555 B DC 16 O2 ? ? B DG 5 B DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog9 hydrog ? ? B DG 4 O6 ? ? ? 1_555 B DC 16 N4 ? ? B DG 5 B DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog10 hydrog ? ? B DA 5 N1 ? ? ? 1_555 B DT 15 N3 ? ? B DA 6 B DT 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog11 hydrog ? ? B DA 5 N6 ? ? ? 1_555 B DT 15 O4 ? ? B DA 6 B DT 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog12 hydrog ? ? B DA 6 N1 ? ? ? 1_555 B DT 14 N3 ? ? B DA 7 B DT 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog13 hydrog ? ? B DA 6 N6 ? ? ? 1_555 B DT 14 O4 ? ? B DA 7 B DT 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog14 hydrog ? ? B DC 7 N3 ? ? ? 1_555 B DG 13 N1 ? ? B DC 8 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog15 hydrog ? ? B DC 7 N4 ? ? ? 1_555 B DG 13 O6 ? ? B DC 8 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog16 hydrog ? ? B DC 7 O2 ? ? ? 1_555 B DG 13 N2 ? ? B DC 8 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog17 hydrog ? ? B DG 8 N1 ? ? ? 1_555 B DC 12 N3 ? ? B DG 9 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog18 hydrog ? ? B DG 8 N2 ? ? ? 1_555 B DC 12 O2 ? ? B DG 9 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog19 hydrog ? ? B DG 8 O6 ? ? ? 1_555 B DC 12 N4 ? ? B DG 9 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog20 hydrog ? ? B DG 9 N2 ? ? ? 1_555 B DA 11 N1 ? ? B DG 10 B DA 12 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? hydrog21 hydrog ? ? B DG 9 N3 ? ? ? 1_555 B DA 11 N6 ? ? B DG 10 B DA 12 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? hydrog22 hydrog ? ? B DG 27 N3 ? ? ? 1_555 B DC 28 N4 ? ? B DG 28 B DC 29 1_555 ? ? ? ? ? ? 'DG-DC PAIR' ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id GLU _struct_mon_prot_cis.label_seq_id 113 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id GLU _struct_mon_prot_cis.auth_seq_id 114 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 GLY _struct_mon_prot_cis.pdbx_label_seq_id_2 114 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 GLY _struct_mon_prot_cis.pdbx_auth_seq_id_2 115 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -0.65 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 2 ? C ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel B 1 2 ? anti-parallel C 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 PHE A 5 ? SER A 11 ? PHE A 6 SER A 12 A 2 GLN A 81 ? GLY A 89 ? GLN A 82 GLY A 90 A 3 HIS A 130 ? THR A 136 ? HIS A 131 THR A 137 A 4 VAL A 117 ? HIS A 122 ? VAL A 118 HIS A 123 A 5 TYR A 48 ? LEU A 52 ? TYR A 49 LEU A 53 B 1 ARG A 29 ? ASP A 32 ? ARG A 30 ASP A 33 B 2 GLU A 37 ? ASP A 40 ? GLU A 38 ASP A 41 C 1 ARG A 150 ? LYS A 151 ? ARG A 151 LYS A 152 C 2 ASP A 154 ? TYR A 155 ? ASP A 155 TYR A 156 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N VAL A 10 ? N VAL A 11 O ALA A 83 ? O ALA A 84 A 2 3 N ARG A 84 ? N ARG A 85 O CYS A 135 ? O CYS A 136 A 3 4 O LEU A 134 ? O LEU A 135 N ASP A 118 ? N ASP A 119 A 4 5 O VAL A 117 ? O VAL A 118 N LEU A 52 ? N LEU A 53 B 1 2 N ILE A 30 ? N ILE A 31 O LYS A 39 ? O LYS A 40 C 1 2 N LYS A 151 ? N LYS A 152 O ASP A 154 ? O ASP A 155 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE NI A 201' AC2 Software ? ? ? ? 1 'BINDING SITE FOR RESIDUE CA A 204' AC3 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE CA A 205' AC4 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE CA B 101' AC5 Software ? ? ? ? 1 'BINDING SITE FOR RESIDUE CA B 102' AC6 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE CA B 103' AC7 Software ? ? ? ? 1 'BINDING SITE FOR RESIDUE CA B 104' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 HIS A 122 ? HIS A 123 . ? 1_555 ? 2 AC1 5 HIS A 130 ? HIS A 131 . ? 1_555 ? 3 AC1 5 HIS A 132 ? HIS A 133 . ? 1_555 ? 4 AC1 5 HOH M . ? HOH A 309 . ? 1_555 ? 5 AC1 5 HOH M . ? HOH A 310 . ? 1_555 ? 6 AC2 1 ASN A 14 ? ASN A 15 . ? 1_555 ? 7 AC3 2 ASN A 128 ? ASN A 129 . ? 1_555 ? 8 AC3 2 HOH N . ? HOH B 204 . ? 1_555 ? 9 AC4 3 DG B 8 ? DG B 9 . ? 1_555 ? 10 AC4 3 DG B 9 ? DG B 10 . ? 1_555 ? 11 AC4 3 HOH N . ? HOH B 203 . ? 1_555 ? 12 AC5 1 DA B 19 ? DA B 20 . ? 1_555 ? 13 AC6 2 GLU A 145 ? GLU A 146 . ? 9_555 ? 14 AC6 2 HOH M . ? HOH A 305 . ? 9_555 ? 15 AC7 1 HOH M . ? HOH A 315 . ? 9_555 ? # _atom_sites.entry_id 4HT4 _atom_sites.fract_transf_matrix[1][1] 0.015816 _atom_sites.fract_transf_matrix[1][2] 0.009132 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.018263 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.003187 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CA CL N NI O P S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 2 2 ALA ALA A . n A 1 2 MSE 2 3 3 MSE MSE A . n A 1 3 TYR 3 4 4 TYR TYR A . n A 1 4 HIS 4 5 5 HIS HIS A . n A 1 5 PHE 5 6 6 PHE PHE A . n A 1 6 GLN 6 7 7 GLN GLN A . n A 1 7 ASN 7 8 8 ASN ASN A . n A 1 8 LYS 8 9 9 LYS LYS A . n A 1 9 PHE 9 10 10 PHE PHE A . n A 1 10 VAL 10 11 11 VAL VAL A . n A 1 11 SER 11 12 12 SER SER A . n A 1 12 LYS 12 13 13 LYS LYS A . n A 1 13 ALA 13 14 14 ALA ALA A . n A 1 14 ASN 14 15 15 ASN ASN A . n A 1 15 GLY 15 16 16 GLY GLY A . n A 1 16 GLN 16 17 17 GLN GLN A . n A 1 17 SER 17 18 18 SER SER A . n A 1 18 ALA 18 19 19 ALA ALA A . n A 1 19 THR 19 20 20 THR THR A . n A 1 20 ALA 20 21 21 ALA ALA A . n A 1 21 LYS 21 22 22 LYS LYS A . n A 1 22 SER 22 23 23 SER SER A . n A 1 23 ALA 23 24 24 ALA ALA A . n A 1 24 PHE 24 25 25 PHE PHE A . n A 1 25 ASN 25 26 26 ASN ASN A . n A 1 26 SER 26 27 27 SER SER A . n A 1 27 ALA 27 28 28 ALA ALA A . n A 1 28 SER 28 29 29 SER SER A . n A 1 29 ARG 29 30 30 ARG ARG A . n A 1 30 ILE 30 31 31 ILE ILE A . n A 1 31 LYS 31 32 32 LYS LYS A . n A 1 32 ASP 32 33 33 ASP ASP A . n A 1 33 PHE 33 34 34 PHE PHE A . n A 1 34 LYS 34 35 35 LYS LYS A . n A 1 35 GLU 35 36 36 GLU GLU A . n A 1 36 ASN 36 37 37 ASN ASN A . n A 1 37 GLU 37 38 38 GLU GLU A . n A 1 38 PHE 38 39 39 PHE PHE A . n A 1 39 LYS 39 40 40 LYS LYS A . n A 1 40 ASP 40 41 41 ASP ASP A . n A 1 41 TYR 41 42 42 TYR TYR A . n A 1 42 SER 42 43 43 SER SER A . n A 1 43 ASN 43 44 44 ASN ASN A . n A 1 44 LYS 44 45 45 LYS LYS A . n A 1 45 GLN 45 46 46 GLN GLN A . n A 1 46 CYS 46 47 47 CYS CYS A . n A 1 47 ASP 47 48 48 ASP ASP A . n A 1 48 TYR 48 49 49 TYR TYR A . n A 1 49 SER 49 50 50 SER SER A . n A 1 50 GLU 50 51 51 GLU GLU A . n A 1 51 ILE 51 52 52 ILE ILE A . n A 1 52 LEU 52 53 53 LEU LEU A . n A 1 53 LEU 53 54 54 LEU LEU A . n A 1 54 PRO 54 55 55 PRO PRO A . n A 1 55 ASN 55 56 56 ASN ASN A . n A 1 56 ASN 56 57 57 ASN ASN A . n A 1 57 ALA 57 58 58 ALA ALA A . n A 1 58 ASP 58 59 59 ASP ASP A . n A 1 59 ASP 59 60 60 ASP ASP A . n A 1 60 LYS 60 61 61 LYS LYS A . n A 1 61 PHE 61 62 62 PHE PHE A . n A 1 62 LYS 62 63 63 LYS LYS A . n A 1 63 ASP 63 64 64 ASP ASP A . n A 1 64 ARG 64 65 65 ARG ARG A . n A 1 65 GLU 65 66 66 GLU GLU A . n A 1 66 TYR 66 67 67 TYR TYR A . n A 1 67 LEU 67 68 68 LEU LEU A . n A 1 68 TRP 68 69 69 TRP TRP A . n A 1 69 ASN 69 70 70 ASN ASN A . n A 1 70 LYS 70 71 71 LYS LYS A . n A 1 71 VAL 71 72 72 VAL VAL A . n A 1 72 HIS 72 73 73 HIS HIS A . n A 1 73 ASP 73 74 74 ASP ASP A . n A 1 74 VAL 74 75 75 VAL VAL A . n A 1 75 GLU 75 76 76 GLU GLU A . n A 1 76 ASN 76 77 77 ASN ASN A . n A 1 77 ARG 77 78 78 ARG ARG A . n A 1 78 LYS 78 79 79 LYS LYS A . n A 1 79 ASN 79 80 80 ASN ASN A . n A 1 80 SER 80 81 81 SER SER A . n A 1 81 GLN 81 82 82 GLN GLN A . n A 1 82 VAL 82 83 83 VAL VAL A . n A 1 83 ALA 83 84 84 ALA ALA A . n A 1 84 ARG 84 85 85 ARG ARG A . n A 1 85 GLU 85 86 86 GLU GLU A . n A 1 86 ILE 86 87 87 ILE ILE A . n A 1 87 ILE 87 88 88 ILE ILE A . n A 1 88 ILE 88 89 89 ILE ILE A . n A 1 89 GLY 89 90 90 GLY GLY A . n A 1 90 LEU 90 91 91 LEU LEU A . n A 1 91 PRO 91 92 92 PRO PRO A . n A 1 92 ASN 92 93 93 ASN ASN A . n A 1 93 GLU 93 94 94 GLU GLU A . n A 1 94 PHE 94 95 95 PHE PHE A . n A 1 95 ASP 95 96 96 ASP ASP A . n A 1 96 PRO 96 97 97 PRO PRO A . n A 1 97 ASN 97 98 98 ASN ASN A . n A 1 98 SER 98 99 99 SER SER A . n A 1 99 ASN 99 100 100 ASN ASN A . n A 1 100 ILE 100 101 101 ILE ILE A . n A 1 101 GLU 101 102 102 GLU GLU A . n A 1 102 LEU 102 103 103 LEU LEU A . n A 1 103 ALA 103 104 104 ALA ALA A . n A 1 104 LYS 104 105 105 LYS LYS A . n A 1 105 GLU 105 106 106 GLU GLU A . n A 1 106 PHE 106 107 107 PHE PHE A . n A 1 107 ALA 107 108 108 ALA ALA A . n A 1 108 GLU 108 109 109 GLU GLU A . n A 1 109 SER 109 110 110 SER SER A . n A 1 110 LEU 110 111 111 LEU LEU A . n A 1 111 SER 111 112 112 SER SER A . n A 1 112 ASN 112 113 113 ASN ASN A . n A 1 113 GLU 113 114 114 GLU GLU A . n A 1 114 GLY 114 115 115 GLY GLY A . n A 1 115 MSE 115 116 116 MSE MSE A . n A 1 116 ILE 116 117 117 ILE ILE A . n A 1 117 VAL 117 118 118 VAL VAL A . n A 1 118 ASP 118 119 119 ASP ASP A . n A 1 119 LEU 119 120 120 LEU LEU A . n A 1 120 ASN 120 121 121 ASN ASN A . n A 1 121 ILE 121 122 122 ILE ILE A . n A 1 122 HIS 122 123 123 HIS HIS A . n A 1 123 LYS 123 124 124 LYS LYS A . n A 1 124 ILE 124 125 125 ILE ILE A . n A 1 125 ASN 125 126 126 ASN ASN A . n A 1 126 GLU 126 127 127 GLU GLU A . n A 1 127 GLU 127 128 128 GLU GLU A . n A 1 128 ASN 128 129 129 ASN ASN A . n A 1 129 PRO 129 130 130 PRO PRO A . n A 1 130 HIS 130 131 131 HIS HIS A . n A 1 131 ALA 131 132 132 ALA ALA A . n A 1 132 HIS 132 133 133 HIS HIS A . n A 1 133 LEU 133 134 134 LEU LEU A . n A 1 134 LEU 134 135 135 LEU LEU A . n A 1 135 CYS 135 136 136 CYS CYS A . n A 1 136 THR 136 137 137 THR THR A . n A 1 137 LEU 137 138 138 LEU LEU A . n A 1 138 ARG 138 139 139 ARG ARG A . n A 1 139 GLY 139 140 140 GLY GLY A . n A 1 140 LEU 140 141 141 LEU LEU A . n A 1 141 ASP 141 142 142 ASP ASP A . n A 1 142 LYS 142 143 143 LYS LYS A . n A 1 143 ASN 143 144 144 ASN ASN A . n A 1 144 ASN 144 145 145 ASN ASN A . n A 1 145 GLU 145 146 146 GLU GLU A . n A 1 146 PHE 146 147 147 PHE PHE A . n A 1 147 GLU 147 148 148 GLU GLU A . n A 1 148 PRO 148 149 149 PRO PRO A . n A 1 149 LYS 149 150 150 LYS LYS A . n A 1 150 ARG 150 151 151 ARG ARG A . n A 1 151 LYS 151 152 152 LYS LYS A . n A 1 152 GLY 152 153 153 GLY GLY A . n A 1 153 ASN 153 154 154 ASN ASN A . n A 1 154 ASP 154 155 155 ASP ASP A . n A 1 155 TYR 155 156 156 TYR TYR A . n A 1 156 ILE 156 157 157 ILE ILE A . n A 1 157 ARG 157 158 158 ARG ARG A . n A 1 158 ASP 158 159 159 ASP ASP A . n A 1 159 TRP 159 160 160 TRP TRP A . n A 1 160 ASN 160 161 161 ASN ASN A . n A 1 161 THR 161 162 162 THR THR A . n A 1 162 LYS 162 163 163 LYS LYS A . n A 1 163 GLU 163 164 164 GLU GLU A . n A 1 164 LYS 164 165 165 LYS LYS A . n A 1 165 HIS 165 166 166 HIS HIS A . n A 1 166 ASN 166 167 167 ASN ASN A . n A 1 167 GLU 167 168 168 GLU GLU A . n A 1 168 TRP 168 169 169 TRP TRP A . n A 1 169 ARG 169 170 170 ARG ARG A . n A 1 170 LYS 170 171 171 LYS LYS A . n A 1 171 ARG 171 172 172 ARG ARG A . n A 1 172 TRP 172 173 173 TRP TRP A . n A 1 173 GLU 173 174 174 GLU GLU A . n A 1 174 ASN 174 175 175 ASN ASN A . n A 1 175 VAL 175 176 176 VAL VAL A . n A 1 176 GLN 176 177 177 GLN GLN A . n A 1 177 ASN 177 178 178 ASN ASN A . n A 1 178 LYS 178 179 179 LYS LYS A . n A 1 179 HIS 179 180 180 HIS HIS A . n A 1 180 LEU 180 181 181 LEU LEU A . n A 1 181 GLU 181 182 182 GLU GLU A . n A 1 182 LYS 182 183 183 LYS LYS A . n A 1 183 ASN 183 184 184 ASN ASN A . n A 1 184 GLY 184 185 185 GLY GLY A . n A 1 185 PHE 185 186 186 PHE PHE A . n A 1 186 SER 186 187 187 SER SER A . n A 1 187 VAL 187 188 188 VAL VAL A . n A 1 188 ARG 188 189 189 ARG ARG A . n A 1 189 VAL 189 190 190 VAL VAL A . n A 1 190 SER 190 191 191 SER SER A . n A 1 191 ALA 191 192 192 ALA ALA A . n A 1 192 ASP 192 193 193 ASP ASP A . n A 1 193 SER 193 194 194 SER SER A . n A 1 194 TYR 194 195 195 TYR TYR A . n A 1 195 LEU 195 196 ? ? ? A . n B 2 1 DC 1 2 2 DC DC B . n B 2 2 DG 2 3 3 DG DG B . n B 2 3 DC 3 4 4 DC DC B . n B 2 4 DG 4 5 5 DG DG B . n B 2 5 DA 5 6 6 DA DA B . n B 2 6 DA 6 7 7 DA DA B . n B 2 7 DC 7 8 8 DC DC B . n B 2 8 DG 8 9 9 DG DG B . n B 2 9 DG 9 10 10 DG DG B . n B 2 10 DA 10 11 11 DA DA B . n B 2 11 DA 11 12 12 DA DA B . n B 2 12 DC 12 13 13 DC DC B . n B 2 13 DG 13 14 14 DG DG B . n B 2 14 DT 14 15 15 DT DT B . n B 2 15 DT 15 16 16 DT DT B . n B 2 16 DC 16 17 17 DC DC B . n B 2 17 DG 17 18 18 DG DG B . n B 2 18 DC 18 19 19 DC DC B . n B 2 19 DA 19 20 20 DA DA B . n B 2 20 DT 20 21 21 DT DT B . n B 2 21 DA 21 22 22 DA DA B . n B 2 22 DA 22 23 23 DA DA B . n B 2 23 DG 23 24 24 DG DG B . n B 2 24 DT 24 25 25 DT DT B . n B 2 25 DG 25 26 26 DG DG B . n B 2 26 DC 26 27 27 DC DC B . n B 2 27 DG 27 28 28 DG DG B . n B 2 28 DC 28 29 29 DC DC B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NI 1 201 1 NI NI A . D 4 CA 1 202 1 CA CA A . E 4 CA 1 203 2 CA CA A . F 4 CA 1 204 5 CA CA A . G 4 CA 1 205 8 CA CA A . H 5 CL 1 206 1 CL CL A . I 4 CA 1 101 3 CA CA B . J 4 CA 1 102 4 CA CA B . K 4 CA 1 103 6 CA CA B . L 4 CA 1 104 7 CA CA B . M 6 HOH 1 301 1 HOH HOH A . M 6 HOH 2 302 2 HOH HOH A . M 6 HOH 3 303 7 HOH HOH A . M 6 HOH 4 304 9 HOH HOH A . M 6 HOH 5 305 10 HOH HOH A . M 6 HOH 6 306 15 HOH HOH A . M 6 HOH 7 307 18 HOH HOH A . M 6 HOH 8 308 24 HOH HOH A . M 6 HOH 9 309 45 HOH HOH A . M 6 HOH 10 310 46 HOH HOH A . M 6 HOH 11 311 47 HOH HOH A . M 6 HOH 12 312 49 HOH HOH A . M 6 HOH 13 313 52 HOH HOH A . M 6 HOH 14 314 53 HOH HOH A . M 6 HOH 15 315 54 HOH HOH A . N 6 HOH 1 201 3 HOH HOH B . N 6 HOH 2 202 48 HOH HOH B . N 6 HOH 3 203 50 HOH HOH B . N 6 HOH 4 204 51 HOH HOH B . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 2 A MSE 3 ? MET SELENOMETHIONINE 2 A MSE 115 A MSE 116 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4150 ? 1 MORE -96 ? 1 'SSA (A^2)' 12640 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 NE2 ? A HIS 130 ? A HIS 131 ? 1_555 NI ? C NI . ? A NI 201 ? 1_555 NE2 ? A HIS 132 ? A HIS 133 ? 1_555 89.2 ? 2 NE2 ? A HIS 130 ? A HIS 131 ? 1_555 NI ? C NI . ? A NI 201 ? 1_555 ND1 ? A HIS 122 ? A HIS 123 ? 1_555 92.0 ? 3 NE2 ? A HIS 132 ? A HIS 133 ? 1_555 NI ? C NI . ? A NI 201 ? 1_555 ND1 ? A HIS 122 ? A HIS 123 ? 1_555 80.6 ? 4 NE2 ? A HIS 130 ? A HIS 131 ? 1_555 NI ? C NI . ? A NI 201 ? 1_555 O ? M HOH . ? A HOH 309 ? 1_555 84.7 ? 5 NE2 ? A HIS 132 ? A HIS 133 ? 1_555 NI ? C NI . ? A NI 201 ? 1_555 O ? M HOH . ? A HOH 309 ? 1_555 116.1 ? 6 ND1 ? A HIS 122 ? A HIS 123 ? 1_555 NI ? C NI . ? A NI 201 ? 1_555 O ? M HOH . ? A HOH 309 ? 1_555 162.8 ? 7 NE2 ? A HIS 130 ? A HIS 131 ? 1_555 NI ? C NI . ? A NI 201 ? 1_555 O ? M HOH . ? A HOH 310 ? 1_555 170.9 ? 8 NE2 ? A HIS 132 ? A HIS 133 ? 1_555 NI ? C NI . ? A NI 201 ? 1_555 O ? M HOH . ? A HOH 310 ? 1_555 93.4 ? 9 ND1 ? A HIS 122 ? A HIS 123 ? 1_555 NI ? C NI . ? A NI 201 ? 1_555 O ? M HOH . ? A HOH 310 ? 1_555 79.8 ? 10 O ? M HOH . ? A HOH 309 ? 1_555 NI ? C NI . ? A NI 201 ? 1_555 O ? M HOH . ? A HOH 310 ? 1_555 101.9 ? 11 OP2 ? B DG 8 ? B DG 9 ? 1_555 CA ? I CA . ? B CA 101 ? 1_555 O6 ? B DG 9 ? B DG 10 ? 1_555 135.5 ? 12 OP2 ? B DG 8 ? B DG 9 ? 1_555 CA ? I CA . ? B CA 101 ? 1_555 O ? N HOH . ? B HOH 203 ? 1_555 146.4 ? 13 O6 ? B DG 9 ? B DG 10 ? 1_555 CA ? I CA . ? B CA 101 ? 1_555 O ? N HOH . ? B HOH 203 ? 1_555 77.2 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-01-30 2 'Structure model' 1 1 2013-02-13 3 'Structure model' 1 2 2013-03-06 4 'Structure model' 1 3 2017-11-15 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' Advisory 4 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' pdbx_unobs_or_zero_occ_atoms 2 4 'Structure model' software # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_software.classification' 2 4 'Structure model' '_software.contact_author' 3 4 'Structure model' '_software.contact_author_email' 4 4 'Structure model' '_software.date' 5 4 'Structure model' '_software.language' 6 4 'Structure model' '_software.location' 7 4 'Structure model' '_software.name' 8 4 'Structure model' '_software.type' 9 4 'Structure model' '_software.version' # _diffrn_reflns.diffrn_id 1 _diffrn_reflns.pdbx_d_res_high 2.900 _diffrn_reflns.pdbx_d_res_low 100.000 _diffrn_reflns.pdbx_number_obs 8865 _diffrn_reflns.pdbx_Rmerge_I_obs 0.097 _diffrn_reflns.pdbx_Rsym_value ? _diffrn_reflns.pdbx_chi_squared 2.15 _diffrn_reflns.av_sigmaI_over_netI 47.95 _diffrn_reflns.pdbx_redundancy 20.30 _diffrn_reflns.pdbx_percent_possible_obs 97.70 _diffrn_reflns.number 179546 _diffrn_reflns.pdbx_observed_criterion ? _diffrn_reflns.limit_h_max ? _diffrn_reflns.limit_h_min ? _diffrn_reflns.limit_k_max ? _diffrn_reflns.limit_k_min ? _diffrn_reflns.limit_l_max ? _diffrn_reflns.limit_l_min ? # loop_ _pdbx_diffrn_reflns_shell.diffrn_id _pdbx_diffrn_reflns_shell.d_res_high _pdbx_diffrn_reflns_shell.d_res_low _pdbx_diffrn_reflns_shell.number_obs _pdbx_diffrn_reflns_shell.rejects _pdbx_diffrn_reflns_shell.Rmerge_I_obs _pdbx_diffrn_reflns_shell.Rsym_value _pdbx_diffrn_reflns_shell.chi_squared _pdbx_diffrn_reflns_shell.redundancy _pdbx_diffrn_reflns_shell.percent_possible_obs 1 7.87 100.00 ? ? 0.067 ? 6.453 17.50 96.00 1 6.25 7.87 ? ? 0.075 ? 4.815 20.30 99.20 1 5.46 6.25 ? ? 0.078 ? 3.455 21.10 100.00 1 4.96 5.46 ? ? 0.079 ? 3.008 21.40 99.10 1 4.60 4.96 ? ? 0.076 ? 2.529 21.80 99.60 1 4.33 4.60 ? ? 0.077 ? 2.203 21.40 100.00 1 4.11 4.33 ? ? 0.083 ? 1.972 22.10 99.30 1 3.94 4.11 ? ? 0.084 ? 1.871 22.60 99.80 1 3.78 3.94 ? ? 0.103 ? 1.726 22.10 99.40 1 3.65 3.78 ? ? 0.127 ? 1.668 23.00 99.30 1 3.54 3.65 ? ? 0.133 ? 1.424 22.90 99.50 1 3.44 3.54 ? ? 0.137 ? 1.248 22.80 99.60 1 3.35 3.44 ? ? 0.157 ? 1.203 23.00 99.50 1 3.27 3.35 ? ? 0.179 ? 1.136 22.80 99.80 1 3.19 3.27 ? ? 0.229 ? 1.059 21.50 99.50 1 3.12 3.19 ? ? 0.214 ? 1.029 18.10 99.50 1 3.06 3.12 ? ? 0.256 ? 1.013 16.40 99.60 1 3.00 3.06 ? ? 0.211 ? 1.043 14.90 95.90 1 2.95 3.00 ? ? 0.260 ? 1.027 13.70 88.10 1 2.90 2.95 ? ? 0.261 ? 1.020 13.20 79.70 # _phasing.method SAD # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 DENZO . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data reduction' http://www.hkl-xray.com/ ? ? 2 SCALEPACK . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 3 SOLVE . ? program 'Tom Terwilliger' terwilliger@LANL.gov phasing http://www.solve.lanl.gov/ ? ? 4 RESOLVE . ? program 'Thomas C. Terwilliger' terwilliger@lanl.gov phasing http://www.solve.lanl.gov/ ? ? 5 PHENIX 1.8.1_1168 ? package 'Paul D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 6 PDB_EXTRACT 3.11 'April 22, 2011' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 NE2 _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 GLN _pdbx_validate_symm_contact.auth_seq_id_1 7 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 N3 _pdbx_validate_symm_contact.auth_asym_id_2 B _pdbx_validate_symm_contact.auth_comp_id_2 DC _pdbx_validate_symm_contact.auth_seq_id_2 29 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 4_565 _pdbx_validate_symm_contact.dist 2.04 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" B DC 19 ? ? "C1'" B DC 19 ? ? N1 B DC 19 ? ? 110.35 108.30 2.05 0.30 N 2 1 "O4'" B DA 23 ? ? "C1'" B DA 23 ? ? N9 B DA 23 ? ? 110.88 108.30 2.58 0.30 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 124 ? ? 26.78 65.31 2 1 ASP A 142 ? ? -102.80 -164.89 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 9 ? CG ? A LYS 8 CG 2 1 Y 1 A LYS 9 ? CD ? A LYS 8 CD 3 1 Y 1 A LYS 9 ? CE ? A LYS 8 CE 4 1 Y 1 A LYS 9 ? NZ ? A LYS 8 NZ 5 1 Y 1 A LYS 32 ? CG ? A LYS 31 CG 6 1 Y 1 A LYS 32 ? CD ? A LYS 31 CD 7 1 Y 1 A LYS 32 ? CE ? A LYS 31 CE 8 1 Y 1 A LYS 32 ? NZ ? A LYS 31 NZ 9 1 Y 1 A LYS 35 ? CG ? A LYS 34 CG 10 1 Y 1 A LYS 35 ? CD ? A LYS 34 CD 11 1 Y 1 A LYS 35 ? CE ? A LYS 34 CE 12 1 Y 1 A LYS 35 ? NZ ? A LYS 34 NZ 13 1 Y 1 A ASN 56 ? CG ? A ASN 55 CG 14 1 Y 1 A ASN 56 ? OD1 ? A ASN 55 OD1 15 1 Y 1 A ASN 56 ? ND2 ? A ASN 55 ND2 16 1 Y 1 A ASN 57 ? CG ? A ASN 56 CG 17 1 Y 1 A ASN 57 ? OD1 ? A ASN 56 OD1 18 1 Y 1 A ASN 57 ? ND2 ? A ASN 56 ND2 19 1 Y 1 A ASN 77 ? CG ? A ASN 76 CG 20 1 Y 1 A ASN 77 ? OD1 ? A ASN 76 OD1 21 1 Y 1 A ASN 77 ? ND2 ? A ASN 76 ND2 22 1 Y 1 A ASN 98 ? CG ? A ASN 97 CG 23 1 Y 1 A ASN 98 ? OD1 ? A ASN 97 OD1 24 1 Y 1 A ASN 98 ? ND2 ? A ASN 97 ND2 25 1 Y 1 A LYS 143 ? CG ? A LYS 142 CG 26 1 Y 1 A LYS 143 ? CD ? A LYS 142 CD 27 1 Y 1 A LYS 143 ? CE ? A LYS 142 CE 28 1 Y 1 A LYS 143 ? NZ ? A LYS 142 NZ 29 1 Y 1 A LYS 152 ? CG ? A LYS 151 CG 30 1 Y 1 A LYS 152 ? CD ? A LYS 151 CD 31 1 Y 1 A LYS 152 ? CE ? A LYS 151 CE 32 1 Y 1 A LYS 152 ? NZ ? A LYS 151 NZ 33 1 Y 1 A GLU 164 ? CG ? A GLU 163 CG 34 1 Y 1 A GLU 164 ? CD ? A GLU 163 CD 35 1 Y 1 A GLU 164 ? OE1 ? A GLU 163 OE1 36 1 Y 1 A GLU 164 ? OE2 ? A GLU 163 OE2 37 1 Y 1 A LYS 171 ? CG ? A LYS 170 CG 38 1 Y 1 A LYS 171 ? CD ? A LYS 170 CD 39 1 Y 1 A LYS 171 ? CE ? A LYS 170 CE 40 1 Y 1 A LYS 171 ? NZ ? A LYS 170 NZ 41 1 Y 1 A LYS 183 ? CG ? A LYS 182 CG 42 1 Y 1 A LYS 183 ? CD ? A LYS 182 CD 43 1 Y 1 A LYS 183 ? CE ? A LYS 182 CE 44 1 Y 1 A LYS 183 ? NZ ? A LYS 182 NZ 45 1 Y 1 A ASP 193 ? CG ? A ASP 192 CG 46 1 Y 1 A ASP 193 ? OD1 ? A ASP 192 OD1 47 1 Y 1 A ASP 193 ? OD2 ? A ASP 192 OD2 48 1 Y 1 A TYR 195 ? CG ? A TYR 194 CG 49 1 Y 1 A TYR 195 ? CD1 ? A TYR 194 CD1 50 1 Y 1 A TYR 195 ? CD2 ? A TYR 194 CD2 51 1 Y 1 A TYR 195 ? CE1 ? A TYR 194 CE1 52 1 Y 1 A TYR 195 ? CE2 ? A TYR 194 CE2 53 1 Y 1 A TYR 195 ? CZ ? A TYR 194 CZ 54 1 Y 1 A TYR 195 ? OH ? A TYR 194 OH # _pdbx_unobs_or_zero_occ_residues.id 1 _pdbx_unobs_or_zero_occ_residues.PDB_model_num 1 _pdbx_unobs_or_zero_occ_residues.polymer_flag Y _pdbx_unobs_or_zero_occ_residues.occupancy_flag 1 _pdbx_unobs_or_zero_occ_residues.auth_asym_id A _pdbx_unobs_or_zero_occ_residues.auth_comp_id LEU _pdbx_unobs_or_zero_occ_residues.auth_seq_id 196 _pdbx_unobs_or_zero_occ_residues.PDB_ins_code ? _pdbx_unobs_or_zero_occ_residues.label_asym_id A _pdbx_unobs_or_zero_occ_residues.label_comp_id LEU _pdbx_unobs_or_zero_occ_residues.label_seq_id 195 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 4HT4 'double helix' 4HT4 'b-form double helix' 4HT4 'hairpin loop' 4HT4 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DG 2 1_555 B DC 18 1_555 -0.215 -0.232 0.302 -6.605 5.503 -9.447 1 B_DG3:DC19_B B 3 ? B 19 ? 19 1 1 B DC 3 1_555 B DG 17 1_555 0.377 -0.125 0.768 3.215 -14.950 1.567 2 B_DC4:DG18_B B 4 ? B 18 ? 19 1 1 B DG 4 1_555 B DC 16 1_555 0.339 0.051 0.563 22.836 -10.610 7.413 3 B_DG5:DC17_B B 5 ? B 17 ? 19 1 1 B DA 5 1_555 B DT 15 1_555 0.126 -0.279 -0.325 0.171 -26.726 -9.912 4 B_DA6:DT16_B B 6 ? B 16 ? 20 1 1 B DA 6 1_555 B DT 14 1_555 -0.483 -0.299 0.339 2.172 -19.248 4.007 5 B_DA7:DT15_B B 7 ? B 15 ? 20 1 1 B DC 7 1_555 B DG 13 1_555 -0.349 -0.159 0.531 -4.214 -18.111 -4.217 6 B_DC8:DG14_B B 8 ? B 14 ? 19 1 1 B DG 8 1_555 B DC 12 1_555 0.722 -0.172 -0.701 5.651 8.447 -3.066 7 B_DG9:DC13_B B 9 ? B 13 ? 19 1 1 B DG 9 1_555 B DA 11 1_555 3.525 -4.134 0.090 20.128 -26.817 -58.627 8 B_DG10:DA12_B B 10 ? B 12 ? 10 6 1 B DG 27 1_555 B DC 28 1_555 6.766 1.197 -2.189 10.188 -37.049 14.396 9 B_DG28:DC29_B B 28 ? B 29 ? ? ? # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B DG 2 1_555 B DC 18 1_555 B DC 3 1_555 B DG 17 1_555 -0.828 -0.204 3.198 -3.142 1.238 33.033 -0.563 0.929 3.251 2.170 5.509 33.201 1 BB_DG3DC4:DG18DC19_BB B 3 ? B 19 ? B 4 ? B 18 ? 1 B DC 3 1_555 B DG 17 1_555 B DG 4 1_555 B DC 16 1_555 1.282 0.607 3.078 4.571 4.945 34.874 0.288 -1.448 3.267 8.157 -7.540 35.498 2 BB_DC4DG5:DC17DG18_BB B 4 ? B 18 ? B 5 ? B 17 ? 1 B DG 4 1_555 B DC 16 1_555 B DA 5 1_555 B DT 15 1_555 -1.729 -0.289 3.660 -0.245 2.534 37.445 -0.820 2.652 3.644 3.942 0.381 37.528 3 BB_DG5DA6:DT16DC17_BB B 5 ? B 17 ? B 6 ? B 16 ? 1 B DA 5 1_555 B DT 15 1_555 B DA 6 1_555 B DT 14 1_555 0.683 -0.299 3.096 -5.785 -0.931 35.819 -0.359 -1.851 2.960 -1.501 9.329 36.279 4 BB_DA6DA7:DT15DT16_BB B 6 ? B 16 ? B 7 ? B 15 ? 1 B DA 6 1_555 B DT 14 1_555 B DC 7 1_555 B DG 13 1_555 -0.500 -0.791 3.390 -4.897 -4.037 34.966 -0.670 0.061 3.493 -6.650 8.068 35.520 5 BB_DA7DC8:DG14DT15_BB B 7 ? B 15 ? B 8 ? B 14 ? 1 B DC 7 1_555 B DG 13 1_555 B DG 8 1_555 B DC 12 1_555 0.540 1.226 3.344 11.749 -0.503 43.144 1.662 0.412 3.359 -0.670 -15.633 44.644 6 BB_DC8DG9:DC13DG14_BB B 8 ? B 14 ? B 9 ? B 13 ? 1 B DG 8 1_555 B DC 12 1_555 B DG 9 1_555 B DA 11 1_555 3.222 0.226 2.972 3.784 11.734 97.790 -0.028 -2.071 3.071 7.763 -2.504 98.367 7 BB_DG9DG10:DA12DC13_BB B 9 ? B 13 ? B 10 ? B 12 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'NICKEL (II) ION' NI 4 'CALCIUM ION' CA 5 'CHLORIDE ION' CL 6 water HOH #