HEADER LIGASE/LIGASE INHIBITOR 08-NOV-12 4HWS TITLE CRYSTAL STRUCTURE OF E. COLI THREONYL-TRNA SYNTHETASE BOUND TO A NOVEL TITLE 2 INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: THREONINE--TRNA LIGASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 242-642; COMPND 5 SYNONYM: THREONYL-TRNA SYNTHETASE, THRRS; COMPND 6 EC: 6.1.1.3; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: THRS, B1719, JW1709; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-AI; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS AMINOACYL-TRNA SYNTHETASE, PROTEIN-INHIBITOR COMPLEX, ANTIBACTERIAL, KEYWDS 2 LIGASE-LIGASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.T.HILGERS REVDAT 2 28-FEB-24 4HWS 1 REMARK SEQADV LINK REVDAT 1 18-SEP-13 4HWS 0 JRNL AUTH M.TENG,M.T.HILGERS,M.L.CUNNINGHAM,A.BORCHARDT,J.B.LOCKE, JRNL AUTH 2 S.ABRAHAM,G.HALEY,B.P.KWAN,C.HALL,G.W.HOUGH,K.J.SHAW,J.FINN JRNL TITL IDENTIFICATION OF BACTERIA-SELECTIVE THREONYL-TRNA JRNL TITL 2 SYNTHETASE SUBSTRATE INHIBITORS BY STRUCTURE-BASED DESIGN. JRNL REF J.MED.CHEM. V. 56 1748 2013 JRNL REFN ISSN 0022-2623 JRNL PMID 23362938 JRNL DOI 10.1021/JM301756M REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.35 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.9 REMARK 3 NUMBER OF REFLECTIONS : 104555 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5500 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2688 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 32.71 REMARK 3 BIN R VALUE (WORKING SET) : 0.4690 REMARK 3 BIN FREE R VALUE SET COUNT : 158 REMARK 3 BIN FREE R VALUE : 0.4290 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6605 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 60 REMARK 3 SOLVENT ATOMS : 544 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.67 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01000 REMARK 3 B22 (A**2) : -0.17000 REMARK 3 B33 (A**2) : 0.18000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.108 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.102 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.065 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.794 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6815 ; 0.013 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9186 ; 1.532 ; 1.956 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 805 ; 6.167 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 357 ;32.449 ;23.501 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1230 ;15.290 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 62 ;17.785 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 953 ; 0.106 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5240 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 242 638 B 242 638 477 0.110 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 24 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 242 A 357 REMARK 3 ORIGIN FOR THE GROUP (A): 18.1175 -27.9820 -17.3637 REMARK 3 T TENSOR REMARK 3 T11: 0.1816 T22: 0.1904 REMARK 3 T33: 0.1902 T12: 0.0037 REMARK 3 T13: -0.0010 T23: -0.0140 REMARK 3 L TENSOR REMARK 3 L11: 0.6722 L22: 0.3680 REMARK 3 L33: 0.1911 L12: -0.0461 REMARK 3 L13: -0.1400 L23: -0.0320 REMARK 3 S TENSOR REMARK 3 S11: 0.0290 S12: -0.0666 S13: 0.0196 REMARK 3 S21: -0.0016 S22: -0.0091 S23: 0.0237 REMARK 3 S31: 0.0152 S32: -0.0028 S33: -0.0199 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 358 A 373 REMARK 3 ORIGIN FOR THE GROUP (A): 23.8273 -36.5061 -13.1133 REMARK 3 T TENSOR REMARK 3 T11: 0.1657 T22: 0.2034 REMARK 3 T33: 0.1851 T12: 0.0041 REMARK 3 T13: -0.0147 T23: 0.0192 REMARK 3 L TENSOR REMARK 3 L11: 1.1632 L22: 1.7036 REMARK 3 L33: 1.8433 L12: -0.8877 REMARK 3 L13: -0.6853 L23: -0.2610 REMARK 3 S TENSOR REMARK 3 S11: -0.1072 S12: -0.1684 S13: -0.0636 REMARK 3 S21: 0.0764 S22: 0.0977 S23: 0.0445 REMARK 3 S31: 0.0735 S32: 0.1405 S33: 0.0095 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 374 A 389 REMARK 3 ORIGIN FOR THE GROUP (A): 14.6399 -32.5941 -19.2003 REMARK 3 T TENSOR REMARK 3 T11: 0.1817 T22: 0.1933 REMARK 3 T33: 0.2019 T12: -0.0049 REMARK 3 T13: -0.0018 T23: -0.0038 REMARK 3 L TENSOR REMARK 3 L11: 2.8840 L22: 0.4338 REMARK 3 L33: 0.4657 L12: -0.7159 REMARK 3 L13: 0.9246 L23: -0.3400 REMARK 3 S TENSOR REMARK 3 S11: -0.0559 S12: -0.0271 S13: -0.0371 REMARK 3 S21: 0.0441 S22: 0.0048 S23: 0.0377 REMARK 3 S31: -0.0041 S32: -0.0306 S33: 0.0511 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 390 A 418 REMARK 3 ORIGIN FOR THE GROUP (A): 8.1243 -38.8869 -32.1399 REMARK 3 T TENSOR REMARK 3 T11: 0.1918 T22: 0.2137 REMARK 3 T33: 0.2009 T12: -0.0145 REMARK 3 T13: -0.0186 T23: -0.0438 REMARK 3 L TENSOR REMARK 3 L11: 0.9451 L22: 0.4193 REMARK 3 L33: 0.5409 L12: -0.3941 REMARK 3 L13: -0.6170 L23: 0.1181 REMARK 3 S TENSOR REMARK 3 S11: -0.0101 S12: 0.1686 S13: -0.0739 REMARK 3 S21: -0.1252 S22: -0.0580 S23: 0.0799 REMARK 3 S31: 0.0742 S32: -0.1093 S33: 0.0681 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 419 A 432 REMARK 3 ORIGIN FOR THE GROUP (A): 1.2361 -44.6306 -11.5677 REMARK 3 T TENSOR REMARK 3 T11: 0.1912 T22: 0.1718 REMARK 3 T33: 0.2201 T12: -0.0306 REMARK 3 T13: 0.0189 T23: -0.0106 REMARK 3 L TENSOR REMARK 3 L11: 1.1390 L22: 2.1480 REMARK 3 L33: 1.8914 L12: -0.9738 REMARK 3 L13: -0.1959 L23: 0.0615 REMARK 3 S TENSOR REMARK 3 S11: -0.1013 S12: -0.1146 S13: -0.1260 REMARK 3 S21: 0.1805 S22: 0.1078 S23: 0.0883 REMARK 3 S31: 0.1697 S32: 0.0523 S33: -0.0066 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 433 A 465 REMARK 3 ORIGIN FOR THE GROUP (A): 1.9442 -44.9932 -21.4331 REMARK 3 T TENSOR REMARK 3 T11: 0.1808 T22: 0.1758 REMARK 3 T33: 0.2233 T12: -0.0376 REMARK 3 T13: -0.0028 T23: -0.0406 REMARK 3 L TENSOR REMARK 3 L11: 0.6111 L22: 0.8432 REMARK 3 L33: 1.2909 L12: -0.0487 REMARK 3 L13: -0.8061 L23: -0.3096 REMARK 3 S TENSOR REMARK 3 S11: -0.0029 S12: 0.0651 S13: -0.0986 REMARK 3 S21: 0.0187 S22: 0.0031 S23: 0.0547 REMARK 3 S31: 0.0207 S32: -0.0745 S33: -0.0001 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 466 A 499 REMARK 3 ORIGIN FOR THE GROUP (A): 9.2407 -38.3197 -19.7810 REMARK 3 T TENSOR REMARK 3 T11: 0.1808 T22: 0.1962 REMARK 3 T33: 0.2207 T12: -0.0121 REMARK 3 T13: 0.0025 T23: -0.0173 REMARK 3 L TENSOR REMARK 3 L11: 0.2235 L22: 0.6265 REMARK 3 L33: 0.2870 L12: -0.1080 REMARK 3 L13: -0.2355 L23: 0.0418 REMARK 3 S TENSOR REMARK 3 S11: -0.0342 S12: 0.0084 S13: -0.0647 REMARK 3 S21: 0.0316 S22: -0.0202 S23: 0.0619 REMARK 3 S31: 0.0884 S32: -0.0598 S33: 0.0544 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 500 A 507 REMARK 3 ORIGIN FOR THE GROUP (A): -11.6793 -22.6073 -19.2906 REMARK 3 T TENSOR REMARK 3 T11: 0.0782 T22: 0.2988 REMARK 3 T33: 0.3077 T12: -0.0127 REMARK 3 T13: 0.0476 T23: -0.0199 REMARK 3 L TENSOR REMARK 3 L11: 12.8646 L22: 2.5095 REMARK 3 L33: 6.3728 L12: -5.6089 REMARK 3 L13: 2.9228 L23: -1.8614 REMARK 3 S TENSOR REMARK 3 S11: -0.0767 S12: 0.2032 S13: 0.0333 REMARK 3 S21: 0.0244 S22: 0.0035 S23: -0.0043 REMARK 3 S31: 0.2528 S32: -0.6762 S33: 0.0732 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 508 A 582 REMARK 3 ORIGIN FOR THE GROUP (A): 36.9613 -31.8412 -36.8833 REMARK 3 T TENSOR REMARK 3 T11: 0.2125 T22: 0.1803 REMARK 3 T33: 0.2197 T12: 0.0068 REMARK 3 T13: 0.0247 T23: 0.0063 REMARK 3 L TENSOR REMARK 3 L11: 0.2924 L22: 0.3123 REMARK 3 L33: 0.4280 L12: -0.1218 REMARK 3 L13: -0.3496 L23: 0.1161 REMARK 3 S TENSOR REMARK 3 S11: 0.0383 S12: -0.0224 S13: -0.0109 REMARK 3 S21: -0.0901 S22: -0.0355 S23: -0.0803 REMARK 3 S31: -0.0353 S32: 0.0092 S33: -0.0028 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 583 A 601 REMARK 3 ORIGIN FOR THE GROUP (A): 45.5852 -35.1886 -43.1755 REMARK 3 T TENSOR REMARK 3 T11: 0.2221 T22: 0.1651 REMARK 3 T33: 0.2588 T12: 0.0095 REMARK 3 T13: 0.0910 T23: -0.0208 REMARK 3 L TENSOR REMARK 3 L11: 0.8748 L22: 1.6185 REMARK 3 L33: 1.8530 L12: -0.4241 REMARK 3 L13: -0.3534 L23: -1.1549 REMARK 3 S TENSOR REMARK 3 S11: 0.0119 S12: -0.0432 S13: -0.0323 REMARK 3 S21: -0.2487 S22: -0.0676 S23: -0.3176 REMARK 3 S31: 0.0835 S32: 0.1215 S33: 0.0557 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 602 A 619 REMARK 3 ORIGIN FOR THE GROUP (A): 42.5279 -36.4929 -50.7696 REMARK 3 T TENSOR REMARK 3 T11: 0.3320 T22: 0.2147 REMARK 3 T33: 0.2225 T12: -0.0759 REMARK 3 T13: 0.1940 T23: -0.0807 REMARK 3 L TENSOR REMARK 3 L11: 2.3167 L22: 3.5449 REMARK 3 L33: 2.0219 L12: 0.8432 REMARK 3 L13: -1.0538 L23: -2.5878 REMARK 3 S TENSOR REMARK 3 S11: -0.3200 S12: 0.3207 S13: -0.2706 REMARK 3 S21: -0.3420 S22: 0.2316 S23: -0.1982 REMARK 3 S31: 0.2073 S32: -0.2181 S33: 0.0884 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 620 A 650 REMARK 3 ORIGIN FOR THE GROUP (A): 30.0625 -37.0018 -45.6844 REMARK 3 T TENSOR REMARK 3 T11: 0.2570 T22: 0.1959 REMARK 3 T33: 0.1374 T12: 0.0140 REMARK 3 T13: 0.0170 T23: -0.0245 REMARK 3 L TENSOR REMARK 3 L11: 0.9239 L22: 2.0111 REMARK 3 L33: 1.8636 L12: 0.6932 REMARK 3 L13: -0.4338 L23: -0.8719 REMARK 3 S TENSOR REMARK 3 S11: -0.0646 S12: 0.2387 S13: -0.1379 REMARK 3 S21: -0.4176 S22: -0.0086 S23: 0.0323 REMARK 3 S31: 0.0955 S32: -0.0674 S33: 0.0732 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 242 B 312 REMARK 3 ORIGIN FOR THE GROUP (A): 23.9011 -15.0315 -17.5017 REMARK 3 T TENSOR REMARK 3 T11: 0.1864 T22: 0.1724 REMARK 3 T33: 0.1956 T12: -0.0025 REMARK 3 T13: 0.0148 T23: 0.0047 REMARK 3 L TENSOR REMARK 3 L11: 0.6486 L22: 0.2202 REMARK 3 L33: 0.3802 L12: 0.1530 REMARK 3 L13: 0.1488 L23: 0.1583 REMARK 3 S TENSOR REMARK 3 S11: 0.0611 S12: -0.0454 S13: -0.0213 REMARK 3 S21: -0.0384 S22: -0.0384 S23: 0.0557 REMARK 3 S31: -0.0032 S32: 0.0052 S33: -0.0227 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 313 B 326 REMARK 3 ORIGIN FOR THE GROUP (A): 29.3773 -24.7028 -0.2044 REMARK 3 T TENSOR REMARK 3 T11: 0.3123 T22: 0.2453 REMARK 3 T33: 0.1444 T12: 0.0069 REMARK 3 T13: 0.0089 T23: 0.0328 REMARK 3 L TENSOR REMARK 3 L11: 1.1268 L22: 0.6154 REMARK 3 L33: 1.1506 L12: 0.4074 REMARK 3 L13: 0.5366 L23: -0.3549 REMARK 3 S TENSOR REMARK 3 S11: 0.0921 S12: -0.2199 S13: -0.0037 REMARK 3 S21: 0.2973 S22: -0.1452 S23: 0.0157 REMARK 3 S31: -0.0832 S32: 0.0509 S33: 0.0531 REMARK 3 REMARK 3 TLS GROUP : 15 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 327 B 360 REMARK 3 ORIGIN FOR THE GROUP (A): 41.0551 -22.6230 -17.9087 REMARK 3 T TENSOR REMARK 3 T11: 0.1769 T22: 0.2080 REMARK 3 T33: 0.2106 T12: 0.0054 REMARK 3 T13: 0.0042 T23: -0.0072 REMARK 3 L TENSOR REMARK 3 L11: 1.2845 L22: 0.3173 REMARK 3 L33: 0.7363 L12: -0.3196 REMARK 3 L13: -0.6716 L23: 0.3517 REMARK 3 S TENSOR REMARK 3 S11: 0.0009 S12: -0.0813 S13: 0.0073 REMARK 3 S21: 0.0094 S22: 0.0288 S23: -0.0422 REMARK 3 S31: 0.0709 S32: 0.0959 S33: -0.0296 REMARK 3 REMARK 3 TLS GROUP : 16 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 361 B 380 REMARK 3 ORIGIN FOR THE GROUP (A): 22.3677 -10.2228 -8.2376 REMARK 3 T TENSOR REMARK 3 T11: 0.1726 T22: 0.2097 REMARK 3 T33: 0.1935 T12: -0.0064 REMARK 3 T13: 0.0398 T23: -0.0240 REMARK 3 L TENSOR REMARK 3 L11: 2.1767 L22: 1.5515 REMARK 3 L33: 2.0262 L12: -1.1031 REMARK 3 L13: 0.9502 L23: -0.2111 REMARK 3 S TENSOR REMARK 3 S11: -0.1034 S12: -0.2572 S13: 0.0713 REMARK 3 S21: 0.0210 S22: 0.1202 S23: 0.0474 REMARK 3 S31: -0.0700 S32: -0.1227 S33: -0.0168 REMARK 3 REMARK 3 TLS GROUP : 17 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 381 B 418 REMARK 3 ORIGIN FOR THE GROUP (A): 39.3762 -5.7160 -23.8804 REMARK 3 T TENSOR REMARK 3 T11: 0.2006 T22: 0.2010 REMARK 3 T33: 0.2007 T12: -0.0250 REMARK 3 T13: 0.0294 T23: -0.0011 REMARK 3 L TENSOR REMARK 3 L11: 0.5939 L22: 0.6074 REMARK 3 L33: 0.1007 L12: -0.1556 REMARK 3 L13: 0.0294 L23: 0.1120 REMARK 3 S TENSOR REMARK 3 S11: 0.0201 S12: 0.0398 S13: 0.0369 REMARK 3 S21: -0.0765 S22: -0.0016 S23: -0.0323 REMARK 3 S31: -0.0786 S32: 0.0803 S33: -0.0186 REMARK 3 REMARK 3 TLS GROUP : 18 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 419 B 445 REMARK 3 ORIGIN FOR THE GROUP (A): 47.4234 -3.6128 -8.1837 REMARK 3 T TENSOR REMARK 3 T11: 0.1942 T22: 0.1980 REMARK 3 T33: 0.1626 T12: -0.0731 REMARK 3 T13: 0.0064 T23: -0.0033 REMARK 3 L TENSOR REMARK 3 L11: 1.1660 L22: 2.5510 REMARK 3 L33: 3.4687 L12: -0.8939 REMARK 3 L13: 0.5701 L23: -2.1940 REMARK 3 S TENSOR REMARK 3 S11: -0.0021 S12: -0.0499 S13: 0.1140 REMARK 3 S21: 0.2615 S22: -0.1655 S23: -0.1196 REMARK 3 S31: -0.3045 S32: 0.2990 S33: 0.1675 REMARK 3 REMARK 3 TLS GROUP : 19 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 446 B 466 REMARK 3 ORIGIN FOR THE GROUP (A): 41.9196 0.4367 -13.2151 REMARK 3 T TENSOR REMARK 3 T11: 0.2113 T22: 0.1738 REMARK 3 T33: 0.1967 T12: -0.0436 REMARK 3 T13: 0.0306 T23: -0.0077 REMARK 3 L TENSOR REMARK 3 L11: 0.1670 L22: 2.5189 REMARK 3 L33: 2.5221 L12: 0.1406 REMARK 3 L13: -0.2185 L23: -2.0266 REMARK 3 S TENSOR REMARK 3 S11: 0.0331 S12: 0.0114 S13: -0.0071 REMARK 3 S21: 0.1141 S22: -0.0160 S23: 0.0477 REMARK 3 S31: -0.1377 S32: 0.0425 S33: -0.0171 REMARK 3 REMARK 3 TLS GROUP : 20 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 467 B 498 REMARK 3 ORIGIN FOR THE GROUP (A): 37.5200 -7.5295 -14.0059 REMARK 3 T TENSOR REMARK 3 T11: 0.1728 T22: 0.2127 REMARK 3 T33: 0.2373 T12: -0.0248 REMARK 3 T13: 0.0240 T23: -0.0013 REMARK 3 L TENSOR REMARK 3 L11: 0.1138 L22: 0.4832 REMARK 3 L33: 0.3911 L12: 0.1563 REMARK 3 L13: 0.0249 L23: 0.3430 REMARK 3 S TENSOR REMARK 3 S11: 0.0684 S12: -0.0837 S13: 0.0786 REMARK 3 S21: 0.0122 S22: -0.0343 S23: 0.0052 REMARK 3 S31: -0.0982 S32: 0.1173 S33: -0.0341 REMARK 3 REMARK 3 TLS GROUP : 21 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 499 B 505 REMARK 3 ORIGIN FOR THE GROUP (A): 60.8349 -22.2449 -19.6607 REMARK 3 T TENSOR REMARK 3 T11: 0.0270 T22: 0.4231 REMARK 3 T33: 0.3252 T12: 0.0433 REMARK 3 T13: 0.0157 T23: -0.0375 REMARK 3 L TENSOR REMARK 3 L11: 20.2403 L22: 6.6314 REMARK 3 L33: 16.2482 L12: 2.2252 REMARK 3 L13: -13.7750 L23: 5.1096 REMARK 3 S TENSOR REMARK 3 S11: 0.3724 S12: 0.1181 S13: 0.0778 REMARK 3 S21: 0.1176 S22: 0.5267 S23: -0.7260 REMARK 3 S31: -0.2256 S32: 0.5049 S33: -0.8991 REMARK 3 REMARK 3 TLS GROUP : 22 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 506 B 531 REMARK 3 ORIGIN FOR THE GROUP (A): 29.1356 -7.2305 -20.2040 REMARK 3 T TENSOR REMARK 3 T11: 0.2030 T22: 0.1794 REMARK 3 T33: 0.2163 T12: -0.0109 REMARK 3 T13: 0.0205 T23: -0.0050 REMARK 3 L TENSOR REMARK 3 L11: 1.3250 L22: 0.4520 REMARK 3 L33: 0.1200 L12: -0.5122 REMARK 3 L13: 0.0295 L23: 0.0853 REMARK 3 S TENSOR REMARK 3 S11: 0.0193 S12: 0.0220 S13: 0.0385 REMARK 3 S21: -0.0111 S22: -0.0290 S23: 0.0168 REMARK 3 S31: -0.1014 S32: 0.0605 S33: 0.0097 REMARK 3 REMARK 3 TLS GROUP : 23 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 532 B 632 REMARK 3 ORIGIN FOR THE GROUP (A): 5.4591 -7.4799 -41.7474 REMARK 3 T TENSOR REMARK 3 T11: 0.2048 T22: 0.1654 REMARK 3 T33: 0.2097 T12: 0.0308 REMARK 3 T13: -0.0241 T23: 0.0107 REMARK 3 L TENSOR REMARK 3 L11: 0.4785 L22: 1.0003 REMARK 3 L33: 0.5040 L12: -0.0792 REMARK 3 L13: 0.0107 L23: -0.1752 REMARK 3 S TENSOR REMARK 3 S11: -0.0086 S12: 0.0278 S13: 0.0567 REMARK 3 S21: -0.1067 S22: -0.0038 S23: 0.1150 REMARK 3 S31: 0.0542 S32: 0.0344 S33: 0.0123 REMARK 3 REMARK 3 TLS GROUP : 24 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 633 B 639 REMARK 3 ORIGIN FOR THE GROUP (A): 22.4859 -2.8556 -38.8297 REMARK 3 T TENSOR REMARK 3 T11: 0.2009 T22: 0.2115 REMARK 3 T33: 0.1746 T12: 0.0320 REMARK 3 T13: 0.0077 T23: 0.0446 REMARK 3 L TENSOR REMARK 3 L11: 4.1194 L22: 8.6557 REMARK 3 L33: 6.0330 L12: -2.0956 REMARK 3 L13: 0.7410 L23: -1.3680 REMARK 3 S TENSOR REMARK 3 S11: 0.0265 S12: 0.5058 S13: 0.2851 REMARK 3 S21: 0.2873 S22: -0.2926 S23: -0.3301 REMARK 3 S31: -0.5659 S32: 0.1068 S33: 0.2661 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT U VALUES: RESIDUAL ONLY REMARK 4 REMARK 4 4HWS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-NOV-12. REMARK 100 THE DEPOSITION ID IS D_1000076017. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 5.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU300 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 104555 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.698 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.3.0 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.84 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, MPD, SODIUM CITRATE, PH 5.9, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 43.09050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.43300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 55.16350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 57.43300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 43.09050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 55.16350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4000 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 240 REMARK 465 ALA A 241 REMARK 465 MET B 240 REMARK 465 ALA B 241 REMARK 465 LEU B 640 REMARK 465 GLU B 641 REMARK 465 GLU B 642 REMARK 465 LEU B 643 REMARK 465 GLU B 644 REMARK 465 HIS B 645 REMARK 465 HIS B 646 REMARK 465 HIS B 647 REMARK 465 HIS B 648 REMARK 465 HIS B 649 REMARK 465 HIS B 650 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CE MET B 263 O HOH B 807 1.81 REMARK 500 O HOH B 1017 O HOH B 1061 1.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 854 O HOH B 1049 3644 1.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 511 CG HIS A 511 CD2 0.065 REMARK 500 TRP B 304 CE2 TRP B 304 CD2 0.075 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 282 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 313 11.08 -159.01 REMARK 500 CYS A 480 -90.76 -118.71 REMARK 500 SER A 488 -51.31 -120.36 REMARK 500 GLU A 641 36.08 71.75 REMARK 500 ALA B 260 73.38 -153.16 REMARK 500 TYR B 313 12.92 -162.96 REMARK 500 CYS B 480 -91.12 -116.55 REMARK 500 ASN B 502 -8.60 77.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 701 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 334 SG REMARK 620 2 HIS A 385 NE2 100.1 REMARK 620 3 HIS A 511 ND1 106.9 92.7 REMARK 620 4 1B3 A 702 N7 90.7 153.5 107.3 REMARK 620 5 1B3 A 702 O6 146.6 82.1 106.2 75.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 701 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 334 SG REMARK 620 2 HIS B 385 NE2 98.1 REMARK 620 3 HIS B 511 ND1 105.4 96.5 REMARK 620 4 1B3 B 702 O6 144.9 85.4 108.9 REMARK 620 5 1B3 B 702 N7 89.6 152.4 107.0 73.5 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1B3 A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1B3 B 702 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4HWO RELATED DB: PDB REMARK 900 RELATED ID: 4HWP RELATED DB: PDB REMARK 900 RELATED ID: 4HWR RELATED DB: PDB REMARK 900 RELATED ID: 4HWT RELATED DB: PDB DBREF 4HWS A 242 642 UNP P0A8M3 SYT_ECOLI 242 642 DBREF 4HWS B 242 642 UNP P0A8M3 SYT_ECOLI 242 642 SEQADV 4HWS MET A 240 UNP P0A8M3 EXPRESSION TAG SEQADV 4HWS ALA A 241 UNP P0A8M3 EXPRESSION TAG SEQADV 4HWS LEU A 643 UNP P0A8M3 EXPRESSION TAG SEQADV 4HWS GLU A 644 UNP P0A8M3 EXPRESSION TAG SEQADV 4HWS HIS A 645 UNP P0A8M3 EXPRESSION TAG SEQADV 4HWS HIS A 646 UNP P0A8M3 EXPRESSION TAG SEQADV 4HWS HIS A 647 UNP P0A8M3 EXPRESSION TAG SEQADV 4HWS HIS A 648 UNP P0A8M3 EXPRESSION TAG SEQADV 4HWS HIS A 649 UNP P0A8M3 EXPRESSION TAG SEQADV 4HWS HIS A 650 UNP P0A8M3 EXPRESSION TAG SEQADV 4HWS MET B 240 UNP P0A8M3 EXPRESSION TAG SEQADV 4HWS ALA B 241 UNP P0A8M3 EXPRESSION TAG SEQADV 4HWS LEU B 643 UNP P0A8M3 EXPRESSION TAG SEQADV 4HWS GLU B 644 UNP P0A8M3 EXPRESSION TAG SEQADV 4HWS HIS B 645 UNP P0A8M3 EXPRESSION TAG SEQADV 4HWS HIS B 646 UNP P0A8M3 EXPRESSION TAG SEQADV 4HWS HIS B 647 UNP P0A8M3 EXPRESSION TAG SEQADV 4HWS HIS B 648 UNP P0A8M3 EXPRESSION TAG SEQADV 4HWS HIS B 649 UNP P0A8M3 EXPRESSION TAG SEQADV 4HWS HIS B 650 UNP P0A8M3 EXPRESSION TAG SEQRES 1 A 411 MET ALA ARG ASP HIS ARG LYS ILE GLY LYS GLN LEU ASP SEQRES 2 A 411 LEU TYR HIS MET GLN GLU GLU ALA PRO GLY MET VAL PHE SEQRES 3 A 411 TRP HIS ASN ASP GLY TRP THR ILE PHE ARG GLU LEU GLU SEQRES 4 A 411 VAL PHE VAL ARG SER LYS LEU LYS GLU TYR GLN TYR GLN SEQRES 5 A 411 GLU VAL LYS GLY PRO PHE MET MET ASP ARG VAL LEU TRP SEQRES 6 A 411 GLU LYS THR GLY HIS TRP ASP ASN TYR LYS ASP ALA MET SEQRES 7 A 411 PHE THR THR SER SER GLU ASN ARG GLU TYR CYS ILE LYS SEQRES 8 A 411 PRO MET ASN CYS PRO GLY HIS VAL GLN ILE PHE ASN GLN SEQRES 9 A 411 GLY LEU LYS SER TYR ARG ASP LEU PRO LEU ARG MET ALA SEQRES 10 A 411 GLU PHE GLY SER CYS HIS ARG ASN GLU PRO SER GLY SER SEQRES 11 A 411 LEU HIS GLY LEU MET ARG VAL ARG GLY PHE THR GLN ASP SEQRES 12 A 411 ASP ALA HIS ILE PHE CYS THR GLU GLU GLN ILE ARG ASP SEQRES 13 A 411 GLU VAL ASN GLY CYS ILE ARG LEU VAL TYR ASP MET TYR SEQRES 14 A 411 SER THR PHE GLY PHE GLU LYS ILE VAL VAL LYS LEU SER SEQRES 15 A 411 THR ARG PRO GLU LYS ARG ILE GLY SER ASP GLU MET TRP SEQRES 16 A 411 ASP ARG ALA GLU ALA ASP LEU ALA VAL ALA LEU GLU GLU SEQRES 17 A 411 ASN ASN ILE PRO PHE GLU TYR GLN LEU GLY GLU GLY ALA SEQRES 18 A 411 PHE TYR GLY PRO LYS ILE GLU PHE THR LEU TYR ASP CYS SEQRES 19 A 411 LEU ASP ARG ALA TRP GLN CYS GLY THR VAL GLN LEU ASP SEQRES 20 A 411 PHE SER LEU PRO SER ARG LEU SER ALA SER TYR VAL GLY SEQRES 21 A 411 GLU ASP ASN GLU ARG LYS VAL PRO VAL MET ILE HIS ARG SEQRES 22 A 411 ALA ILE LEU GLY SER MET GLU ARG PHE ILE GLY ILE LEU SEQRES 23 A 411 THR GLU GLU PHE ALA GLY PHE PHE PRO THR TRP LEU ALA SEQRES 24 A 411 PRO VAL GLN VAL VAL ILE MET ASN ILE THR ASP SER GLN SEQRES 25 A 411 SER GLU TYR VAL ASN GLU LEU THR GLN LYS LEU SER ASN SEQRES 26 A 411 ALA GLY ILE ARG VAL LYS ALA ASP LEU ARG ASN GLU LYS SEQRES 27 A 411 ILE GLY PHE LYS ILE ARG GLU HIS THR LEU ARG ARG VAL SEQRES 28 A 411 PRO TYR MET LEU VAL CYS GLY ASP LYS GLU VAL GLU SER SEQRES 29 A 411 GLY LYS VAL ALA VAL ARG THR ARG ARG GLY LYS ASP LEU SEQRES 30 A 411 GLY SER MET ASP VAL ASN GLU VAL ILE GLU LYS LEU GLN SEQRES 31 A 411 GLN GLU ILE ARG SER ARG SER LEU LYS GLN LEU GLU GLU SEQRES 32 A 411 LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 411 MET ALA ARG ASP HIS ARG LYS ILE GLY LYS GLN LEU ASP SEQRES 2 B 411 LEU TYR HIS MET GLN GLU GLU ALA PRO GLY MET VAL PHE SEQRES 3 B 411 TRP HIS ASN ASP GLY TRP THR ILE PHE ARG GLU LEU GLU SEQRES 4 B 411 VAL PHE VAL ARG SER LYS LEU LYS GLU TYR GLN TYR GLN SEQRES 5 B 411 GLU VAL LYS GLY PRO PHE MET MET ASP ARG VAL LEU TRP SEQRES 6 B 411 GLU LYS THR GLY HIS TRP ASP ASN TYR LYS ASP ALA MET SEQRES 7 B 411 PHE THR THR SER SER GLU ASN ARG GLU TYR CYS ILE LYS SEQRES 8 B 411 PRO MET ASN CYS PRO GLY HIS VAL GLN ILE PHE ASN GLN SEQRES 9 B 411 GLY LEU LYS SER TYR ARG ASP LEU PRO LEU ARG MET ALA SEQRES 10 B 411 GLU PHE GLY SER CYS HIS ARG ASN GLU PRO SER GLY SER SEQRES 11 B 411 LEU HIS GLY LEU MET ARG VAL ARG GLY PHE THR GLN ASP SEQRES 12 B 411 ASP ALA HIS ILE PHE CYS THR GLU GLU GLN ILE ARG ASP SEQRES 13 B 411 GLU VAL ASN GLY CYS ILE ARG LEU VAL TYR ASP MET TYR SEQRES 14 B 411 SER THR PHE GLY PHE GLU LYS ILE VAL VAL LYS LEU SER SEQRES 15 B 411 THR ARG PRO GLU LYS ARG ILE GLY SER ASP GLU MET TRP SEQRES 16 B 411 ASP ARG ALA GLU ALA ASP LEU ALA VAL ALA LEU GLU GLU SEQRES 17 B 411 ASN ASN ILE PRO PHE GLU TYR GLN LEU GLY GLU GLY ALA SEQRES 18 B 411 PHE TYR GLY PRO LYS ILE GLU PHE THR LEU TYR ASP CYS SEQRES 19 B 411 LEU ASP ARG ALA TRP GLN CYS GLY THR VAL GLN LEU ASP SEQRES 20 B 411 PHE SER LEU PRO SER ARG LEU SER ALA SER TYR VAL GLY SEQRES 21 B 411 GLU ASP ASN GLU ARG LYS VAL PRO VAL MET ILE HIS ARG SEQRES 22 B 411 ALA ILE LEU GLY SER MET GLU ARG PHE ILE GLY ILE LEU SEQRES 23 B 411 THR GLU GLU PHE ALA GLY PHE PHE PRO THR TRP LEU ALA SEQRES 24 B 411 PRO VAL GLN VAL VAL ILE MET ASN ILE THR ASP SER GLN SEQRES 25 B 411 SER GLU TYR VAL ASN GLU LEU THR GLN LYS LEU SER ASN SEQRES 26 B 411 ALA GLY ILE ARG VAL LYS ALA ASP LEU ARG ASN GLU LYS SEQRES 27 B 411 ILE GLY PHE LYS ILE ARG GLU HIS THR LEU ARG ARG VAL SEQRES 28 B 411 PRO TYR MET LEU VAL CYS GLY ASP LYS GLU VAL GLU SER SEQRES 29 B 411 GLY LYS VAL ALA VAL ARG THR ARG ARG GLY LYS ASP LEU SEQRES 30 B 411 GLY SER MET ASP VAL ASN GLU VAL ILE GLU LYS LEU GLN SEQRES 31 B 411 GLN GLU ILE ARG SER ARG SER LEU LYS GLN LEU GLU GLU SEQRES 32 B 411 LEU GLU HIS HIS HIS HIS HIS HIS HET ZN A 701 1 HET 1B3 A 702 29 HET ZN B 701 1 HET 1B3 B 702 29 HETNAM ZN ZINC ION HETNAM 1B3 N-{[3-(4-AMINO-2-CHLOROQUINAZOLIN-7-YL) HETNAM 2 1B3 PHENYL]SULFONYL}-L-THREONINAMIDE FORMUL 3 ZN 2(ZN 2+) FORMUL 4 1B3 2(C18 H18 CL N5 O4 S) FORMUL 7 HOH *544(H2 O) HELIX 1 1 ASP A 243 LEU A 251 1 9 HELIX 2 2 HIS A 267 TYR A 288 1 22 HELIX 3 3 ARG A 301 THR A 307 1 7 HELIX 4 4 GLY A 308 LYS A 314 1 7 HELIX 5 5 ASP A 315 MET A 317 5 3 HELIX 6 6 ASN A 333 ASN A 342 1 10 HELIX 7 7 SER A 347 LEU A 351 5 5 HELIX 8 8 PRO A 366 LEU A 370 5 5 HELIX 9 9 THR A 389 GLU A 391 5 3 HELIX 10 10 GLN A 392 THR A 410 1 19 HELIX 11 11 SER A 430 ASN A 448 1 19 HELIX 12 12 SER A 488 LEU A 493 1 6 HELIX 13 13 MET A 518 PHE A 529 1 12 HELIX 14 14 PRO A 534 ALA A 538 5 5 HELIX 15 15 THR A 548 SER A 550 5 3 HELIX 16 16 GLN A 551 ALA A 565 1 15 HELIX 17 17 LYS A 577 ARG A 588 1 12 HELIX 18 18 GLY A 597 GLY A 604 1 8 HELIX 19 19 VAL A 621 SER A 634 1 14 HELIX 20 20 ASP B 243 LEU B 251 1 9 HELIX 21 21 HIS B 267 TYR B 288 1 22 HELIX 22 22 ARG B 301 GLY B 308 1 8 HELIX 23 23 GLY B 308 LYS B 314 1 7 HELIX 24 24 ASP B 315 MET B 317 5 3 HELIX 25 25 ASN B 333 ASN B 342 1 10 HELIX 26 26 SER B 347 LEU B 351 5 5 HELIX 27 27 PRO B 366 LEU B 370 5 5 HELIX 28 28 THR B 389 GLU B 391 5 3 HELIX 29 29 GLN B 392 GLY B 412 1 21 HELIX 30 30 SER B 430 ASN B 448 1 19 HELIX 31 31 SER B 488 LEU B 493 1 6 HELIX 32 32 MET B 518 ALA B 530 1 13 HELIX 33 33 PRO B 534 ALA B 538 5 5 HELIX 34 34 THR B 548 SER B 550 5 3 HELIX 35 35 GLN B 551 ALA B 565 1 15 HELIX 36 36 LYS B 577 ARG B 588 1 12 HELIX 37 37 GLY B 597 GLY B 604 1 8 HELIX 38 38 VAL B 621 SER B 634 1 14 SHEET 1 A 2 TYR A 254 HIS A 255 0 SHEET 2 A 2 PHE A 265 TRP A 266 -1 O PHE A 265 N HIS A 255 SHEET 1 B 8 GLN A 291 GLU A 292 0 SHEET 2 B 8 LEU A 353 HIS A 362 1 O ARG A 354 N GLN A 291 SHEET 3 B 8 GLY A 378 CYS A 388 -1 O PHE A 379 N CYS A 361 SHEET 4 B 8 VAL A 508 SER A 517 -1 O VAL A 508 N CYS A 388 SHEET 5 B 8 ALA A 477 ASP A 486 -1 N GLN A 484 O HIS A 511 SHEET 6 B 8 LYS A 465 TYR A 471 -1 N ILE A 466 O VAL A 483 SHEET 7 B 8 VAL A 417 SER A 421 -1 N SER A 421 O LYS A 465 SHEET 8 B 8 GLU A 453 GLN A 455 1 O GLN A 455 N LEU A 420 SHEET 1 C 3 MET A 298 ASP A 300 0 SHEET 2 C 3 ARG A 325 ILE A 329 -1 O CYS A 328 N MET A 299 SHEET 3 C 3 THR A 319 SER A 322 -1 N THR A 320 O TYR A 327 SHEET 1 D 2 TYR A 497 VAL A 498 0 SHEET 2 D 2 ARG A 504 LYS A 505 -1 O LYS A 505 N TYR A 497 SHEET 1 E 5 VAL A 569 ASP A 572 0 SHEET 2 E 5 VAL A 542 ASN A 546 1 N ILE A 544 O ASP A 572 SHEET 3 E 5 TYR A 592 CYS A 596 1 O LEU A 594 N MET A 545 SHEET 4 E 5 LYS A 605 THR A 610 -1 O ALA A 607 N VAL A 595 SHEET 5 E 5 ASP A 615 ASP A 620 -1 O GLY A 617 N VAL A 608 SHEET 1 F 2 TYR B 254 HIS B 255 0 SHEET 2 F 2 PHE B 265 TRP B 266 -1 O PHE B 265 N HIS B 255 SHEET 1 G 8 GLN B 291 GLU B 292 0 SHEET 2 G 8 LEU B 353 HIS B 362 1 O ARG B 354 N GLN B 291 SHEET 3 G 8 GLY B 378 CYS B 388 -1 O PHE B 379 N CYS B 361 SHEET 4 G 8 VAL B 508 SER B 517 -1 O VAL B 508 N CYS B 388 SHEET 5 G 8 ALA B 477 ASP B 486 -1 N GLN B 484 O HIS B 511 SHEET 6 G 8 LYS B 465 TYR B 471 -1 N ILE B 466 O VAL B 483 SHEET 7 G 8 VAL B 417 SER B 421 -1 N SER B 421 O LYS B 465 SHEET 8 G 8 PHE B 452 GLN B 455 1 O GLN B 455 N LEU B 420 SHEET 1 H 3 MET B 298 ASP B 300 0 SHEET 2 H 3 ARG B 325 ILE B 329 -1 O CYS B 328 N MET B 299 SHEET 3 H 3 THR B 319 SER B 322 -1 N THR B 320 O TYR B 327 SHEET 1 I 2 TYR B 497 VAL B 498 0 SHEET 2 I 2 ARG B 504 LYS B 505 -1 O LYS B 505 N TYR B 497 SHEET 1 J 5 VAL B 569 ASP B 572 0 SHEET 2 J 5 VAL B 542 ASN B 546 1 N ILE B 544 O ASP B 572 SHEET 3 J 5 TYR B 592 CYS B 596 1 O LEU B 594 N MET B 545 SHEET 4 J 5 LYS B 605 THR B 610 -1 O ARG B 609 N MET B 593 SHEET 5 J 5 ASP B 615 ASP B 620 -1 O LEU B 616 N VAL B 608 LINK SG CYS A 334 ZN ZN A 701 1555 1555 2.38 LINK NE2 HIS A 385 ZN ZN A 701 1555 1555 2.13 LINK ND1 HIS A 511 ZN ZN A 701 1555 1555 2.11 LINK ZN ZN A 701 N7 1B3 A 702 1555 1555 2.11 LINK ZN ZN A 701 O6 1B3 A 702 1555 1555 2.12 LINK SG CYS B 334 ZN ZN B 701 1555 1555 2.39 LINK NE2 HIS B 385 ZN ZN B 701 1555 1555 2.07 LINK ND1 HIS B 511 ZN ZN B 701 1555 1555 2.10 LINK ZN ZN B 701 O6 1B3 B 702 1555 1555 2.15 LINK ZN ZN B 701 N7 1B3 B 702 1555 1555 2.19 CISPEP 1 LEU A 351 PRO A 352 0 3.69 CISPEP 2 LEU B 351 PRO B 352 0 -2.17 SITE 1 AC1 4 CYS A 334 HIS A 385 HIS A 511 1B3 A 702 SITE 1 AC2 21 MET A 332 CYS A 334 ARG A 363 GLU A 365 SITE 2 AC2 21 LEU A 373 MET A 374 ARG A 375 VAL A 376 SITE 3 AC2 21 PHE A 379 GLN A 381 ASP A 383 HIS A 385 SITE 4 AC2 21 TYR A 462 LYS A 465 GLN A 479 GLN A 484 SITE 5 AC2 21 HIS A 511 GLY A 516 SER A 517 ARG A 520 SITE 6 AC2 21 ZN A 701 SITE 1 AC3 4 CYS B 334 HIS B 385 HIS B 511 1B3 B 702 SITE 1 AC4 22 MET B 332 CYS B 334 ARG B 363 GLU B 365 SITE 2 AC4 22 LEU B 373 MET B 374 ARG B 375 VAL B 376 SITE 3 AC4 22 PHE B 379 GLN B 381 ASP B 383 HIS B 385 SITE 4 AC4 22 TYR B 462 LYS B 465 GLN B 479 GLN B 484 SITE 5 AC4 22 HIS B 511 GLY B 516 SER B 517 ARG B 520 SITE 6 AC4 22 ZN B 701 HOH B 993 CRYST1 86.181 110.327 114.866 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011603 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009064 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008706 0.00000