HEADER PROTON TRANSPORT 13-NOV-12 4HYJ TITLE CRYSTAL STRUCTURE OF EXIGUOBACTERIUM SIBIRICUM RHODOPSIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: RHODOPSIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: EXIGUOBACTERIUM SIBIRICUM; SOURCE 3 ORGANISM_TAXID: 332410; SOURCE 4 GENE: EXIG_1419; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SEVEN-HELICAL TRANSMEMBRANE PROTEIN, PROTON PUMP, MEMBRANE, PROTON KEYWDS 2 TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR I.GUSHCHIN,P.CHERVAKOV,P.KUZMICHEV,A.POPOV,E.ROUND,V.BORSHCHEVSKIY, AUTHOR 2 D.DOLGIKH,M.KIRPICHNIKOV,L.PETROVSKAYA,V.CHUPIN,A.ARSENIEV, AUTHOR 3 V.GORDELIY REVDAT 3 20-SEP-23 4HYJ 1 REMARK SEQADV LINK REVDAT 2 11-SEP-13 4HYJ 1 JRNL REVDAT 1 17-JUL-13 4HYJ 0 JRNL AUTH I.GUSHCHIN,P.CHERVAKOV,P.KUZMICHEV,A.N.POPOV,E.ROUND, JRNL AUTH 2 V.BORSHCHEVSKIY,A.ISHCHENKO,L.PETROVSKAYA,V.CHUPIN, JRNL AUTH 3 D.A.DOLGIKH,A.A.ARSENIEV,M.KIRPICHNIKOV,V.GORDELIY JRNL TITL STRUCTURAL INSIGHTS INTO THE PROTON PUMPING BY UNUSUAL JRNL TITL 2 PROTEORHODOPSIN FROM NONMARINE BACTERIA. JRNL REF PROC.NATL.ACAD.SCI.USA V. 110 12631 2013 JRNL REFN ISSN 0027-8424 JRNL PMID 23872846 JRNL DOI 10.1073/PNAS.1221629110 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8_1069) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 69.17 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 29408 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.090 REMARK 3 FREE R VALUE TEST SET COUNT : 1498 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 69.1998 - 5.1146 0.95 2661 116 0.2231 0.3092 REMARK 3 2 5.1146 - 4.0598 1.00 2593 177 0.1638 0.1706 REMARK 3 3 4.0598 - 3.5466 0.95 2465 154 0.1641 0.1978 REMARK 3 4 3.5466 - 3.2223 0.99 2576 125 0.1707 0.2086 REMARK 3 5 3.2223 - 2.9914 0.99 2569 143 0.1636 0.2339 REMARK 3 6 2.9914 - 2.8150 0.95 2447 131 0.1571 0.2004 REMARK 3 7 2.8150 - 2.6740 0.98 2485 137 0.1575 0.2257 REMARK 3 8 2.6740 - 2.5576 1.00 2566 143 0.1561 0.2567 REMARK 3 9 2.5576 - 2.4591 1.00 2557 116 0.1613 0.2171 REMARK 3 10 2.4591 - 2.3743 1.00 2583 124 0.1714 0.2143 REMARK 3 11 2.3743 - 2.3000 0.94 2408 132 0.1845 0.2312 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.950 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3909 REMARK 3 ANGLE : 1.401 5213 REMARK 3 CHIRALITY : 0.165 595 REMARK 3 PLANARITY : 0.005 601 REMARK 3 DIHEDRAL : 16.224 1430 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -23.6429 -42.7611 -32.3769 REMARK 3 T TENSOR REMARK 3 T11: 0.0727 T22: 0.1179 REMARK 3 T33: 0.0941 T12: 0.0224 REMARK 3 T13: 0.0196 T23: 0.0191 REMARK 3 L TENSOR REMARK 3 L11: 0.7782 L22: 0.4373 REMARK 3 L33: 0.7056 L12: 0.0667 REMARK 3 L13: -0.0488 L23: 0.3516 REMARK 3 S TENSOR REMARK 3 S11: 0.0026 S12: -0.1090 S13: 0.0322 REMARK 3 S21: -0.0285 S22: -0.0583 S23: -0.0115 REMARK 3 S31: 0.0511 S32: 0.0058 S33: -0.0009 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4HYJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-NOV-12. REMARK 100 THE DEPOSITION ID IS D_1000076079. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-JUN-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35982 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 69.170 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.05400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.33400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: HOMOLOGY MODEL BASED ON PDB ENTRY 3DDL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CUBIC PHASE CRYSTALLIZATION, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 3 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 LEU A 103 REMARK 465 LYS A 104 REMARK 465 GLY A 105 REMARK 465 LEU A 242 REMARK 465 SER A 243 REMARK 465 SER A 244 REMARK 465 SER A 245 REMARK 465 LYS A 246 REMARK 465 GLY A 247 REMARK 465 LYS A 248 REMARK 465 THR A 249 REMARK 465 LEU A 250 REMARK 465 THR A 251 REMARK 465 SER A 252 REMARK 465 HIS A 253 REMARK 465 HIS A 254 REMARK 465 HIS A 255 REMARK 465 HIS A 256 REMARK 465 HIS A 257 REMARK 465 HIS A 258 REMARK 465 MET B 1 REMARK 465 GLU B 2 REMARK 465 GLU B 3 REMARK 465 VAL B 4 REMARK 465 ASN B 5 REMARK 465 LEU B 6 REMARK 465 ALA B 64 REMARK 465 VAL B 65 REMARK 465 GLY B 66 REMARK 465 THR B 67 REMARK 465 SER B 68 REMARK 465 GLY B 69 REMARK 465 LEU B 70 REMARK 465 LEU B 71 REMARK 465 SER B 72 REMARK 465 GLU B 73 REMARK 465 ILE B 74 REMARK 465 ASP B 75 REMARK 465 GLY B 76 REMARK 465 SER B 244 REMARK 465 SER B 245 REMARK 465 LYS B 246 REMARK 465 GLY B 247 REMARK 465 LYS B 248 REMARK 465 THR B 249 REMARK 465 LEU B 250 REMARK 465 THR B 251 REMARK 465 SER B 252 REMARK 465 HIS B 253 REMARK 465 HIS B 254 REMARK 465 HIS B 255 REMARK 465 HIS B 256 REMARK 465 HIS B 257 REMARK 465 HIS B 258 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 3 CG CD OE1 OE2 REMARK 470 LYS A 62 NZ REMARK 470 THR A 67 OG1 CG2 REMARK 470 SER A 68 OG REMARK 470 ARG A 106 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 107 CD1 CD2 REMARK 470 ARG A 109 CZ NH1 NH2 REMARK 470 LYS A 114 NZ REMARK 470 LYS A 167 CG CD CE NZ REMARK 470 GLU A 170 OE1 OE2 REMARK 470 ASN A 171 CG OD1 ND2 REMARK 470 ARG A 177 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 207 CG1 CG2 REMARK 470 GLU A 208 CG CD OE1 OE2 REMARK 470 ILE A 209 CD1 REMARK 470 LYS A 237 CG CD CE NZ REMARK 470 THR A 238 OG1 CG2 REMARK 470 MET A 239 SD CE REMARK 470 SER A 241 OG REMARK 470 LEU B 7 CG CD1 CD2 REMARK 470 VAL B 8 CG1 CG2 REMARK 470 LEU B 9 CG CD1 CD2 REMARK 470 GLN B 12 CG CD OE1 NE2 REMARK 470 TYR B 13 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG B 33 NH1 NH2 REMARK 470 ASN B 34 CG OD1 ND2 REMARK 470 ASP B 63 CG OD1 OD2 REMARK 470 PHE B 77 N CB CG CD1 CD2 CE1 CE2 REMARK 470 PHE B 77 CZ REMARK 470 ILE B 81 CD1 REMARK 470 LYS B 104 CG CD CE NZ REMARK 470 ARG B 106 NE CZ NH1 NH2 REMARK 470 LEU B 107 CD1 CD2 REMARK 470 SER B 132 OG REMARK 470 ASN B 134 CG OD1 ND2 REMARK 470 ILE B 149 CD1 REMARK 470 LYS B 167 CG CD CE NZ REMARK 470 ASN B 171 CG OD1 ND2 REMARK 470 LYS B 182 CE NZ REMARK 470 PHE B 203 CD1 CD2 CE1 CE2 CZ REMARK 470 VAL B 207 CG1 CG2 REMARK 470 GLU B 208 CG CD OE1 OE2 REMARK 470 ILE B 209 CD1 REMARK 470 SER B 241 OG REMARK 470 SER B 243 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 75 -135.28 -141.50 REMARK 500 THR A 163 -76.80 -127.92 REMARK 500 THR B 163 -77.51 -120.93 REMARK 500 ALA B 204 65.10 -155.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 LFA A 302 REMARK 610 LFA A 303 REMARK 610 LFA A 304 REMARK 610 LFA A 305 REMARK 610 LFA A 306 REMARK 610 LFA A 307 REMARK 610 LFA A 308 REMARK 610 LFA A 309 REMARK 610 LFA A 310 REMARK 610 LFA A 311 REMARK 610 LFA A 312 REMARK 610 LFA A 313 REMARK 610 LFA B 302 REMARK 610 LFA B 303 REMARK 610 LFA B 304 REMARK 610 LFA B 305 REMARK 610 LFA B 306 REMARK 610 LFA B 307 REMARK 610 LFA B 308 REMARK 610 LFA B 309 REMARK 610 LFA B 310 REMARK 610 LFA B 311 REMARK 610 LFA B 312 REMARK 610 LFA B 313 REMARK 610 LFA B 314 REMARK 610 LFA B 315 REMARK 610 LFA B 316 REMARK 610 LFA B 317 REMARK 610 LFA B 318 REMARK 610 LFA B 319 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE RET A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LFA A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LFA A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LFA A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LFA A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LFA A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LFA A 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LFA A 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LFA A 311 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LFA A 312 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LFA A 313 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE RET B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LFA B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LFA B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LFA B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LFA B 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LFA B 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LFA B 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LFA B 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LFA B 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LFA B 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LFA B 311 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LFA B 312 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LFA B 313 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LFA B 314 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LFA B 315 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LFA B 316 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LFA B 317 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LFA B 318 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LFA B 319 DBREF 4HYJ A 1 252 UNP B1YFV8 B1YFV8_EXIS2 1 252 DBREF 4HYJ B 1 252 UNP B1YFV8 B1YFV8_EXIS2 1 252 SEQADV 4HYJ HIS A 253 UNP B1YFV8 EXPRESSION TAG SEQADV 4HYJ HIS A 254 UNP B1YFV8 EXPRESSION TAG SEQADV 4HYJ HIS A 255 UNP B1YFV8 EXPRESSION TAG SEQADV 4HYJ HIS A 256 UNP B1YFV8 EXPRESSION TAG SEQADV 4HYJ HIS A 257 UNP B1YFV8 EXPRESSION TAG SEQADV 4HYJ HIS A 258 UNP B1YFV8 EXPRESSION TAG SEQADV 4HYJ HIS B 253 UNP B1YFV8 EXPRESSION TAG SEQADV 4HYJ HIS B 254 UNP B1YFV8 EXPRESSION TAG SEQADV 4HYJ HIS B 255 UNP B1YFV8 EXPRESSION TAG SEQADV 4HYJ HIS B 256 UNP B1YFV8 EXPRESSION TAG SEQADV 4HYJ HIS B 257 UNP B1YFV8 EXPRESSION TAG SEQADV 4HYJ HIS B 258 UNP B1YFV8 EXPRESSION TAG SEQRES 1 A 258 MET GLU GLU VAL ASN LEU LEU VAL LEU ALA THR GLN TYR SEQRES 2 A 258 MET PHE TRP VAL GLY PHE VAL GLY MET ALA ALA GLY THR SEQRES 3 A 258 LEU TYR PHE LEU VAL GLU ARG ASN SER LEU ALA PRO GLU SEQRES 4 A 258 TYR ARG SER THR ALA THR VAL ALA ALA LEU VAL THR PHE SEQRES 5 A 258 VAL ALA ALA ILE HIS TYR TYR PHE MET LYS ASP ALA VAL SEQRES 6 A 258 GLY THR SER GLY LEU LEU SER GLU ILE ASP GLY PHE PRO SEQRES 7 A 258 THR GLU ILE ARG TYR ILE ASP TRP LEU VAL THR THR PRO SEQRES 8 A 258 LEU LEU LEU VAL LYS PHE PRO LEU LEU LEU GLY LEU LYS SEQRES 9 A 258 GLY ARG LEU GLY ARG PRO LEU LEU THR LYS LEU VAL ILE SEQRES 10 A 258 ALA ASP VAL ILE MET ILE VAL GLY GLY TYR ILE GLY GLU SEQRES 11 A 258 SER SER ILE ASN ILE ALA GLY GLY PHE THR GLN LEU GLY SEQRES 12 A 258 LEU TRP SER TYR LEU ILE GLY CYS PHE ALA TRP ILE TYR SEQRES 13 A 258 ILE ILE TYR LEU LEU PHE THR ASN VAL THR LYS ALA ALA SEQRES 14 A 258 GLU ASN LYS PRO ALA PRO ILE ARG ASP ALA LEU LEU LYS SEQRES 15 A 258 MET ARG LEU PHE ILE LEU ILE GLY TRP ALA ILE TYR PRO SEQRES 16 A 258 ILE GLY TYR ALA VAL THR LEU PHE ALA PRO GLY VAL GLU SEQRES 17 A 258 ILE GLN LEU VAL ARG GLU LEU ILE TYR ASN PHE ALA ASP SEQRES 18 A 258 LEU THR ASN LYS VAL GLY PHE GLY LEU ILE ALA PHE PHE SEQRES 19 A 258 ALA VAL LYS THR MET SER SER LEU SER SER SER LYS GLY SEQRES 20 A 258 LYS THR LEU THR SER HIS HIS HIS HIS HIS HIS SEQRES 1 B 258 MET GLU GLU VAL ASN LEU LEU VAL LEU ALA THR GLN TYR SEQRES 2 B 258 MET PHE TRP VAL GLY PHE VAL GLY MET ALA ALA GLY THR SEQRES 3 B 258 LEU TYR PHE LEU VAL GLU ARG ASN SER LEU ALA PRO GLU SEQRES 4 B 258 TYR ARG SER THR ALA THR VAL ALA ALA LEU VAL THR PHE SEQRES 5 B 258 VAL ALA ALA ILE HIS TYR TYR PHE MET LYS ASP ALA VAL SEQRES 6 B 258 GLY THR SER GLY LEU LEU SER GLU ILE ASP GLY PHE PRO SEQRES 7 B 258 THR GLU ILE ARG TYR ILE ASP TRP LEU VAL THR THR PRO SEQRES 8 B 258 LEU LEU LEU VAL LYS PHE PRO LEU LEU LEU GLY LEU LYS SEQRES 9 B 258 GLY ARG LEU GLY ARG PRO LEU LEU THR LYS LEU VAL ILE SEQRES 10 B 258 ALA ASP VAL ILE MET ILE VAL GLY GLY TYR ILE GLY GLU SEQRES 11 B 258 SER SER ILE ASN ILE ALA GLY GLY PHE THR GLN LEU GLY SEQRES 12 B 258 LEU TRP SER TYR LEU ILE GLY CYS PHE ALA TRP ILE TYR SEQRES 13 B 258 ILE ILE TYR LEU LEU PHE THR ASN VAL THR LYS ALA ALA SEQRES 14 B 258 GLU ASN LYS PRO ALA PRO ILE ARG ASP ALA LEU LEU LYS SEQRES 15 B 258 MET ARG LEU PHE ILE LEU ILE GLY TRP ALA ILE TYR PRO SEQRES 16 B 258 ILE GLY TYR ALA VAL THR LEU PHE ALA PRO GLY VAL GLU SEQRES 17 B 258 ILE GLN LEU VAL ARG GLU LEU ILE TYR ASN PHE ALA ASP SEQRES 18 B 258 LEU THR ASN LYS VAL GLY PHE GLY LEU ILE ALA PHE PHE SEQRES 19 B 258 ALA VAL LYS THR MET SER SER LEU SER SER SER LYS GLY SEQRES 20 B 258 LYS THR LEU THR SER HIS HIS HIS HIS HIS HIS HET RET A 301 20 HET LFA A 302 9 HET LFA A 303 10 HET LFA A 304 18 HET LFA A 305 14 HET LFA A 306 14 HET LFA A 307 14 HET LFA A 308 10 HET LFA A 309 8 HET LFA A 310 10 HET LFA A 311 10 HET LFA A 312 6 HET LFA A 313 6 HET RET B 301 20 HET LFA B 302 14 HET LFA B 303 12 HET LFA B 304 10 HET LFA B 305 12 HET LFA B 306 8 HET LFA B 307 10 HET LFA B 308 12 HET LFA B 309 14 HET LFA B 310 8 HET LFA B 311 8 HET LFA B 312 8 HET LFA B 313 8 HET LFA B 314 10 HET LFA B 315 8 HET LFA B 316 6 HET LFA B 317 6 HET LFA B 318 12 HET LFA B 319 8 HETNAM RET RETINAL HETNAM LFA EICOSANE HETSYN LFA LIPID FRAGMENT FORMUL 3 RET 2(C20 H28 O) FORMUL 4 LFA 30(C20 H42) FORMUL 35 HOH *33(H2 O) HELIX 1 1 ASN A 5 GLU A 32 1 28 HELIX 2 2 ARG A 33 LEU A 36 5 4 HELIX 3 3 TYR A 40 GLY A 66 1 27 HELIX 4 4 LEU A 70 ILE A 74 5 5 HELIX 5 5 PHE A 77 VAL A 95 1 19 HELIX 6 6 VAL A 95 GLY A 102 1 8 HELIX 7 7 GLY A 108 GLY A 137 1 30 HELIX 8 8 THR A 140 PHE A 162 1 23 HELIX 9 9 THR A 163 GLU A 170 1 8 HELIX 10 10 PRO A 173 ILE A 189 1 17 HELIX 11 11 ALA A 192 ALA A 204 1 13 HELIX 12 12 GLY A 206 MET A 239 1 34 HELIX 13 13 VAL B 8 ASN B 34 1 27 HELIX 14 14 SER B 35 LEU B 36 5 2 HELIX 15 15 ALA B 37 GLU B 39 5 3 HELIX 16 16 TYR B 40 LYS B 62 1 23 HELIX 17 17 PRO B 78 LEU B 103 1 26 HELIX 18 18 GLY B 108 GLY B 137 1 30 HELIX 19 19 THR B 140 THR B 163 1 24 HELIX 20 20 THR B 163 ALA B 169 1 7 HELIX 21 21 GLU B 170 LYS B 172 5 3 HELIX 22 22 PRO B 173 ILE B 189 1 17 HELIX 23 23 ALA B 192 ALA B 204 1 13 HELIX 24 24 GLY B 206 SER B 243 1 38 LINK NZ LYS A 225 C15 RET A 301 1555 1555 1.32 LINK NZ LYS B 225 C15 RET B 301 1555 1555 1.35 SITE 1 AC1 13 TYR A 83 TRP A 86 MET A 122 GLY A 126 SITE 2 AC1 13 TYR A 147 GLY A 150 CYS A 151 TRP A 154 SITE 3 AC1 13 TRP A 191 TYR A 194 PRO A 195 TYR A 198 SITE 4 AC1 13 LYS A 225 SITE 1 AC2 1 LFA A 308 SITE 1 AC3 8 PRO A 38 THR A 45 LEU A 49 LFA A 305 SITE 2 AC3 8 VAL B 53 PHE B 60 ILE B 81 ILE B 84 SITE 1 AC4 3 VAL A 88 LFA A 304 LEU B 49 SITE 1 AC5 5 LYS A 114 ILE A 117 PHE A 152 TYR A 156 SITE 2 AC5 5 LFA A 312 SITE 1 AC6 1 PHE A 186 SITE 1 AC7 2 VAL A 212 LFA A 302 SITE 1 AC8 1 LYS A 62 SITE 1 AC9 2 VAL A 124 LFA B 317 SITE 1 BC1 1 LFA A 306 SITE 1 BC2 2 ILE A 193 ILE A 216 SITE 1 BC3 12 TYR B 83 TRP B 86 THR B 90 MET B 122 SITE 2 BC3 12 GLY B 126 TYR B 147 GLY B 150 CYS B 151 SITE 3 BC3 12 TRP B 191 TYR B 194 ASP B 221 LYS B 225 SITE 1 BC4 4 LEU A 92 VAL A 95 GLU B 80 ILE B 84 SITE 1 BC5 1 THR B 45 SITE 1 BC6 1 LYS B 62 SITE 1 BC7 4 ILE A 158 PHE A 162 THR A 163 LFA B 319 SITE 1 BC8 1 LEU B 27 SITE 1 BC9 3 PHE A 203 LFA B 308 LFA B 310 SITE 1 CC1 3 PHE A 139 PHE A 203 LFA B 307 SITE 1 CC2 5 GLU A 80 TYR A 127 VAL B 95 LEU B 103 SITE 2 CC2 5 ARG B 109 SITE 1 CC3 2 LEU B 185 LFA B 307 SITE 1 CC4 1 THR B 223 SITE 1 CC5 2 GLN B 141 TRP B 145 SITE 1 CC6 3 PHE A 152 GLN B 141 TRP B 145 SITE 1 CC7 2 PHE B 52 TYR B 59 SITE 1 CC8 1 TYR B 156 SITE 1 CC9 3 PHE A 234 TYR B 13 LFA B 318 SITE 1 DC1 2 LFA A 311 ILE B 121 SITE 1 DC2 5 TYR A 28 LEU A 230 TRP B 16 VAL B 20 SITE 2 DC2 5 LFA B 316 SITE 1 DC3 1 LFA B 305 CRYST1 96.099 96.099 124.380 90.00 90.00 120.00 P 3 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010406 0.006008 0.000000 0.00000 SCALE2 0.000000 0.012016 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008040 0.00000