HEADER HYDROLASE 21-NOV-12 4I1M TITLE CRYSTAL STRUCTURE OF THE LEGIONELLA PNEUMOPHILA GAP DOMAIN OF LEPB COMPND MOL_ID: 1; COMPND 2 MOLECULE: LEPB; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: GAP DOMAIN (UNP RESIDUES 317-618); COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEGIONELLA PNEUMOPHILA SUBSP. PNEUMOPHILA; SOURCE 3 ORGANISM_TAXID: 272624; SOURCE 4 STRAIN: PHILADELPHIA 1 / ATCC 33152 / DSM 7513; SOURCE 5 GENE: LEPB, LPG2490; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: POPINM KEYWDS RABGAP, HYDROLASE ACTIVATOR, RAB1B, LPG2490, GTPASE-ACTIVATING KEYWDS 2 PROTEINS, HYDROLYSIS, RAB1 HYDROLASE, GTP HYDROLASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.STRELLER,E.M.GAZDAG,I.R.VETTER,R.S.GOODY,A.ITZEN REVDAT 4 28-FEB-24 4I1M 1 REMARK SEQADV REVDAT 3 20-SEP-17 4I1M 1 REMARK REVDAT 2 20-FEB-13 4I1M 1 JRNL REVDAT 1 16-JAN-13 4I1M 0 JRNL AUTH E.MIHAI GAZDAG,A.STRELLER,I.HANEBURGER,H.HILBI,I.R.VETTER, JRNL AUTH 2 R.S.GOODY,A.ITZEN JRNL TITL MECHANISM OF RAB1B DEACTIVATION BY THE LEGIONELLA JRNL TITL 2 PNEUMOPHILA GAP LEPB. JRNL REF EMBO REP. V. 14 199 2013 JRNL REFN ISSN 1469-221X JRNL PMID 23288104 JRNL DOI 10.1038/EMBOR.2012.211 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.1_1168 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.83 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.020 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 38034 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1902 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.8386 - 6.7540 1.00 2788 148 0.1794 0.2050 REMARK 3 2 6.7540 - 5.3629 1.00 2648 138 0.2211 0.2516 REMARK 3 3 5.3629 - 4.6855 1.00 2613 139 0.1850 0.2305 REMARK 3 4 4.6855 - 4.2574 1.00 2598 136 0.1743 0.2151 REMARK 3 5 4.2574 - 3.9524 1.00 2577 136 0.1820 0.2370 REMARK 3 6 3.9524 - 3.7194 1.00 2563 135 0.1903 0.2243 REMARK 3 7 3.7194 - 3.5332 1.00 2577 135 0.2063 0.2570 REMARK 3 8 3.5332 - 3.3794 1.00 2551 134 0.2113 0.2292 REMARK 3 9 3.3794 - 3.2494 1.00 2545 133 0.2249 0.2839 REMARK 3 10 3.2494 - 3.1373 1.00 2553 135 0.2442 0.2782 REMARK 3 11 3.1373 - 3.0392 1.00 2540 134 0.2311 0.2886 REMARK 3 12 3.0392 - 2.9523 1.00 2550 136 0.2391 0.2832 REMARK 3 13 2.9523 - 2.8746 1.00 2529 133 0.2397 0.2673 REMARK 3 14 2.8746 - 2.8040 0.98 2500 130 0.2414 0.3009 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.330 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.060 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 66.27 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 76.57 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 6642 REMARK 3 ANGLE : 0.676 9039 REMARK 3 CHIRALITY : 0.051 1033 REMARK 3 PLANARITY : 0.003 1167 REMARK 3 DIHEDRAL : 15.172 2304 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 322:518) REMARK 3 ORIGIN FOR THE GROUP (A): 30.4142 17.6908 55.9070 REMARK 3 T TENSOR REMARK 3 T11: 0.2612 T22: 0.2511 REMARK 3 T33: 0.4002 T12: -0.0923 REMARK 3 T13: 0.0304 T23: -0.0213 REMARK 3 L TENSOR REMARK 3 L11: 2.0548 L22: 4.3217 REMARK 3 L33: 2.6021 L12: -1.2001 REMARK 3 L13: 0.4269 L23: -1.3058 REMARK 3 S TENSOR REMARK 3 S11: -0.0125 S12: -0.0102 S13: 0.0829 REMARK 3 S21: -0.1630 S22: 0.0051 S23: -0.1320 REMARK 3 S31: 0.1620 S32: -0.0855 S33: 0.0169 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 519:618) REMARK 3 ORIGIN FOR THE GROUP (A): 29.1190 -10.8052 67.6000 REMARK 3 T TENSOR REMARK 3 T11: 0.3597 T22: 0.2557 REMARK 3 T33: 0.3297 T12: 0.0541 REMARK 3 T13: -0.0264 T23: 0.0287 REMARK 3 L TENSOR REMARK 3 L11: 4.1829 L22: 3.2809 REMARK 3 L33: 2.8267 L12: 2.0202 REMARK 3 L13: -1.4431 L23: -0.8462 REMARK 3 S TENSOR REMARK 3 S11: -0.0085 S12: -0.0171 S13: -0.0933 REMARK 3 S21: -0.1478 S22: -0.0785 S23: -0.4372 REMARK 3 S31: -0.0991 S32: 0.1548 S33: 0.0237 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN B AND RESID 327:393) REMARK 3 ORIGIN FOR THE GROUP (A): 34.4046 22.6825 26.6536 REMARK 3 T TENSOR REMARK 3 T11: 0.6425 T22: 0.3289 REMARK 3 T33: 0.4041 T12: -0.1192 REMARK 3 T13: 0.0273 T23: 0.0450 REMARK 3 L TENSOR REMARK 3 L11: 6.4129 L22: 2.5992 REMARK 3 L33: 3.4106 L12: -0.1799 REMARK 3 L13: -1.7154 L23: 0.7510 REMARK 3 S TENSOR REMARK 3 S11: -0.1057 S12: 0.4225 S13: -1.1704 REMARK 3 S21: -0.3967 S22: -0.0660 S23: 0.1728 REMARK 3 S31: 0.5990 S32: -0.4520 S33: 0.1581 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN B AND RESID 399:617) REMARK 3 ORIGIN FOR THE GROUP (A): 53.3450 35.2428 32.9541 REMARK 3 T TENSOR REMARK 3 T11: 0.4315 T22: 0.4208 REMARK 3 T33: 0.3594 T12: -0.0291 REMARK 3 T13: 0.0625 T23: 0.0270 REMARK 3 L TENSOR REMARK 3 L11: 2.3273 L22: 1.2502 REMARK 3 L33: 3.4342 L12: -0.0356 REMARK 3 L13: -0.9957 L23: -0.4599 REMARK 3 S TENSOR REMARK 3 S11: 0.0253 S12: -0.1260 S13: 0.1776 REMARK 3 S21: -0.0008 S22: 0.0037 S23: -0.1919 REMARK 3 S31: -0.1315 S32: 0.8127 S33: -0.0067 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN C AND RESID 317:516) REMARK 3 ORIGIN FOR THE GROUP (A): 48.9892 -12.4458 26.2757 REMARK 3 T TENSOR REMARK 3 T11: 1.6767 T22: 0.6241 REMARK 3 T33: 0.8213 T12: -0.1678 REMARK 3 T13: -0.0971 T23: -0.1934 REMARK 3 L TENSOR REMARK 3 L11: 0.3880 L22: 3.4699 REMARK 3 L33: 3.5021 L12: 0.5421 REMARK 3 L13: 0.8937 L23: -1.8572 REMARK 3 S TENSOR REMARK 3 S11: -0.3438 S12: -0.0340 S13: 0.0370 REMARK 3 S21: 0.2579 S22: 0.0941 S23: -0.0291 REMARK 3 S31: -1.6719 S32: 0.5454 S33: 0.2423 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN C AND RESID 517:617) REMARK 3 ORIGIN FOR THE GROUP (A): 55.4537 -1.0864 -1.7821 REMARK 3 T TENSOR REMARK 3 T11: 1.6574 T22: 1.0475 REMARK 3 T33: 0.8630 T12: -0.4049 REMARK 3 T13: -0.0458 T23: -0.1235 REMARK 3 L TENSOR REMARK 3 L11: 0.0503 L22: 1.4290 REMARK 3 L33: 0.6101 L12: -0.3090 REMARK 3 L13: 0.0624 L23: 1.5723 REMARK 3 S TENSOR REMARK 3 S11: 0.1822 S12: 0.0241 S13: 0.0631 REMARK 3 S21: 0.0077 S22: 0.1179 S23: -0.2173 REMARK 3 S31: -1.3173 S32: 0.9005 S33: -0.3308 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4I1M COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-NOV-12. REMARK 100 THE DEPOSITION ID IS D_1000076189. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-JUL-11; 11-AUG-11 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : SLS; SLS REMARK 200 BEAMLINE : X10SA; X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL; NULL REMARK 200 WAVELENGTH OR RANGE (A) : 1.000; 0.9793 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111); DOUBLE REMARK 200 CRYSTAL SI(111) REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL; PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M; DECTRIS REMARK 200 PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE, XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38042 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 49.831 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.29 REMARK 200 R MERGE (I) : 0.08100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.3600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.87 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.73700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.510 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE 2.13 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.69 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BICINE, PH 7.5, 0.75 M LITHIUM REMARK 280 CHLORIDE, 6% PEG6000, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 76.35000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 76.35000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 64.75000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 76.35000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 76.35000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 64.75000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 76.35000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 76.35000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 64.75000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 76.35000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 76.35000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 64.75000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 801 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 317 REMARK 465 GLU A 318 REMARK 465 LEU A 319 REMARK 465 TYR A 320 REMARK 465 GLN A 321 REMARK 465 LYS A 393 REMARK 465 GLU A 394 REMARK 465 ARG A 395 REMARK 465 ILE A 396 REMARK 465 ASP A 397 REMARK 465 SER A 398 REMARK 465 PHE A 526 REMARK 465 ALA A 527 REMARK 465 GLU A 528 REMARK 465 PRO A 529 REMARK 465 LEU A 530 REMARK 465 PRO A 531 REMARK 465 GLU B 317 REMARK 465 GLU B 318 REMARK 465 LEU B 319 REMARK 465 TYR B 320 REMARK 465 GLN B 321 REMARK 465 SER B 322 REMARK 465 ILE B 323 REMARK 465 LEU B 324 REMARK 465 GLU B 325 REMARK 465 LEU B 326 REMARK 465 GLU B 394 REMARK 465 ARG B 395 REMARK 465 ILE B 396 REMARK 465 ASP B 397 REMARK 465 SER B 398 REMARK 465 LYS B 522 REMARK 465 ALA B 523 REMARK 465 PRO B 524 REMARK 465 SER B 525 REMARK 465 PHE B 526 REMARK 465 ALA B 527 REMARK 465 GLU B 528 REMARK 465 PRO B 529 REMARK 465 LEU B 530 REMARK 465 PRO B 531 REMARK 465 GLY B 618 REMARK 465 ALA C 392 REMARK 465 LYS C 393 REMARK 465 GLU C 394 REMARK 465 ARG C 395 REMARK 465 ILE C 396 REMARK 465 ASP C 397 REMARK 465 SER C 398 REMARK 465 THR C 399 REMARK 465 GLY C 618 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 325 CG CD OE1 OE2 REMARK 470 THR A 399 OG1 CG2 REMARK 470 ASP A 461 CG OD1 OD2 REMARK 470 LYS A 518 CG CD CE NZ REMARK 470 GLU A 519 CG CD OE1 OE2 REMARK 470 LYS A 522 CG CD CE NZ REMARK 470 SER A 525 OG REMARK 470 THR B 334 OG1 CG2 REMARK 470 SER B 335 OG REMARK 470 ASP B 354 CG OD1 OD2 REMARK 470 GLU B 356 CG CD OE1 OE2 REMARK 470 LYS B 357 CG CD CE NZ REMARK 470 ASN B 389 CG OD1 ND2 REMARK 470 LYS B 393 CG CD CE NZ REMARK 470 THR B 399 OG1 CG2 REMARK 470 GLN B 453 CG CD OE1 NE2 REMARK 470 LYS B 501 CG CD CE NZ REMARK 470 ASN B 532 CG OD1 ND2 REMARK 470 LYS B 533 CG CD CE NZ REMARK 470 GLU B 543 CG CD OE1 OE2 REMARK 470 LYS B 544 CG CD CE NZ REMARK 470 LYS B 548 CG CD CE NZ REMARK 470 ASN B 577 CG OD1 ND2 REMARK 470 LYS B 578 CG CD CE NZ REMARK 470 LYS B 579 CG CD CE NZ REMARK 470 LYS B 582 CG CD CE NZ REMARK 470 GLU B 589 CG CD OE1 OE2 REMARK 470 LYS B 594 CG CD CE NZ REMARK 470 GLN B 615 CG CD OE1 NE2 REMARK 470 ILE C 323 CG1 CG2 CD1 REMARK 470 LEU C 324 CG CD1 CD2 REMARK 470 LYS C 327 CG CD CE NZ REMARK 470 LEU C 329 CG CD1 CD2 REMARK 470 LEU C 332 CG CD1 CD2 REMARK 470 THR C 334 OG1 CG2 REMARK 470 SER C 335 OG REMARK 470 THR C 337 OG1 CG2 REMARK 470 LYS C 351 CG CD CE NZ REMARK 470 ASP C 354 CG OD1 OD2 REMARK 470 LYS C 357 CG CD CE NZ REMARK 470 GLU C 369 CG CD OE1 OE2 REMARK 470 LYS C 372 CG CD CE NZ REMARK 470 LEU C 376 CG CD1 CD2 REMARK 470 GLU C 380 CG CD OE1 OE2 REMARK 470 LEU C 405 CG CD1 CD2 REMARK 470 TYR C 406 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASP C 407 CG OD1 OD2 REMARK 470 ASN C 408 CG OD1 ND2 REMARK 470 GLU C 412 CG CD OE1 OE2 REMARK 470 ILE C 414 CG1 CG2 CD1 REMARK 470 HIS C 415 CG ND1 CD2 CE1 NE2 REMARK 470 VAL C 420 CG1 CG2 REMARK 470 GLU C 425 CG CD OE1 OE2 REMARK 470 LEU C 432 CG CD1 CD2 REMARK 470 ASN C 441 CG OD1 ND2 REMARK 470 ARG C 444 CG CD NE CZ NH1 NH2 REMARK 470 GLU C 449 CG CD OE1 OE2 REMARK 470 GLN C 453 CG CD OE1 NE2 REMARK 470 LEU C 454 CG CD1 CD2 REMARK 470 LYS C 466 CG CD CE NZ REMARK 470 ILE C 467 CG1 CG2 CD1 REMARK 470 LYS C 482 CG CD CE NZ REMARK 470 ILE C 508 CG1 CG2 CD1 REMARK 470 ILE C 517 CG1 CG2 CD1 REMARK 470 GLU C 519 CG CD OE1 OE2 REMARK 470 LEU C 521 CG CD1 CD2 REMARK 470 LYS C 522 CG CD CE NZ REMARK 470 GLU C 528 CG CD OE1 OE2 REMARK 470 LEU C 530 CG CD1 CD2 REMARK 470 LYS C 533 CG CD CE NZ REMARK 470 ILE C 541 CG1 CG2 CD1 REMARK 470 GLU C 543 CG CD OE1 OE2 REMARK 470 LYS C 544 CG CD CE NZ REMARK 470 LEU C 546 CG CD1 CD2 REMARK 470 LYS C 548 CG CD CE NZ REMARK 470 ASN C 550 CG OD1 ND2 REMARK 470 GLN C 553 CG CD OE1 NE2 REMARK 470 LEU C 554 CG CD1 CD2 REMARK 470 ARG C 573 CG CD NE CZ NH1 NH2 REMARK 470 LEU C 575 CG CD1 CD2 REMARK 470 ASN C 577 CG OD1 ND2 REMARK 470 LYS C 578 CG CD CE NZ REMARK 470 LYS C 579 CG CD CE NZ REMARK 470 LYS C 582 CG CD CE NZ REMARK 470 ILE C 584 CG1 CG2 CD1 REMARK 470 GLU C 589 CG CD OE1 OE2 REMARK 470 VAL C 592 CG1 CG2 REMARK 470 LYS C 594 CG CD CE NZ REMARK 470 ILE C 607 CG1 CG2 CD1 REMARK 470 LEU C 613 CG CD1 CD2 REMARK 470 GLN C 615 CG CD OE1 NE2 REMARK 470 ILE C 616 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN C 532 O PHE C 538 2.00 REMARK 500 OE1 GLU A 534 O HOH A 808 2.07 REMARK 500 O ALA A 495 ND2 ASN A 499 2.10 REMARK 500 O ILE B 365 NZ LYS B 485 2.16 REMARK 500 OG SER C 340 OE2 GLU C 514 2.18 REMARK 500 O ILE A 541 NH2 ARG A 573 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 356 -23.73 -144.86 REMARK 500 LYS A 522 -123.08 39.06 REMARK 500 ASP A 599 65.89 63.22 REMARK 500 SER B 335 45.50 -108.59 REMARK 500 THR B 337 -19.52 -145.65 REMARK 500 TRP B 391 37.24 38.27 REMARK 500 ASP B 461 -6.49 83.83 REMARK 500 SER B 520 34.59 -92.43 REMARK 500 ASP B 598 30.24 -97.34 REMARK 500 ASP B 599 65.71 60.06 REMARK 500 GLN B 615 1.40 -67.03 REMARK 500 LEU C 332 -172.99 -69.11 REMARK 500 MET C 333 -6.96 -152.12 REMARK 500 ASN C 389 43.28 36.20 REMARK 500 PRO C 540 103.48 -59.13 REMARK 500 ASN C 577 106.15 -49.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 701 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4I1O RELATED DB: PDB DBREF 4I1M A 317 618 UNP Q5ZSM7 Q5ZSM7_LEGPH 317 618 DBREF 4I1M B 317 618 UNP Q5ZSM7 Q5ZSM7_LEGPH 317 618 DBREF 4I1M C 317 618 UNP Q5ZSM7 Q5ZSM7_LEGPH 317 618 SEQADV 4I1M ALA A 457 UNP Q5ZSM7 LYS 457 ENGINEERED MUTATION SEQADV 4I1M ALA A 458 UNP Q5ZSM7 GLU 458 ENGINEERED MUTATION SEQADV 4I1M ALA A 460 UNP Q5ZSM7 LYS 460 ENGINEERED MUTATION SEQADV 4I1M ALA B 457 UNP Q5ZSM7 LYS 457 ENGINEERED MUTATION SEQADV 4I1M ALA B 458 UNP Q5ZSM7 GLU 458 ENGINEERED MUTATION SEQADV 4I1M ALA B 460 UNP Q5ZSM7 LYS 460 ENGINEERED MUTATION SEQADV 4I1M ALA C 457 UNP Q5ZSM7 LYS 457 ENGINEERED MUTATION SEQADV 4I1M ALA C 458 UNP Q5ZSM7 GLU 458 ENGINEERED MUTATION SEQADV 4I1M ALA C 460 UNP Q5ZSM7 LYS 460 ENGINEERED MUTATION SEQRES 1 A 302 GLU GLU LEU TYR GLN SER ILE LEU GLU LEU LYS PRO LEU SEQRES 2 A 302 THR LEU LEU MET THR SER SER THR SER PHE SER GLU THR SEQRES 3 A 302 ILE ASN GLN TRP ALA ASP ILE LEU LYS THR THR ASP MET SEQRES 4 A 302 GLU LYS PHE SER PHE ASP SER ASN PRO ILE ASN LEU LEU SEQRES 5 A 302 GLU LEU VAL LYS GLN PHE ASN LEU TYR VAL ASP GLU LEU SEQRES 6 A 302 ALA ILE THR CYS GLU ALA ASN ASN VAL TRP ALA LYS GLU SEQRES 7 A 302 ARG ILE ASP SER THR PRO ASN LEU PHE ALA LEU TYR ASP SEQRES 8 A 302 ASN SER GLY GLY GLU ALA ILE HIS GLY HIS ALA PHE VAL SEQRES 9 A 302 PRO TYR TYR LYS GLU SER ILE VAL LEU ARG ARG LEU PHE SEQRES 10 A 302 THR VAL ASP PRO ASN THR PHE ASN LEU SER ARG PHE ALA SEQRES 11 A 302 ALA PHE GLU GLY PRO CYS GLN LEU TYR CYS ALA ALA HIS SEQRES 12 A 302 ALA ASP SER ALA TRP VAL LYS ILE GLN THR LEU LEU THR SEQRES 13 A 302 LEU GLY ASN GLY ILE ILE ASN THR LEU LYS ILE ILE LYS SEQRES 14 A 302 GLN ALA GLN ALA PHE GLY ILE ASP GLU ALA VAL THR GLU SEQRES 15 A 302 ASN LEU LYS ALA LEU LYS GLU GLN PHE ILE ALA PHE GLN SEQRES 16 A 302 LEU ALA GLU ALA ASP ILE LYS GLU SER LEU LYS ALA PRO SEQRES 17 A 302 SER PHE ALA GLU PRO LEU PRO ASN LYS GLU SER GLU PHE SEQRES 18 A 302 PHE TYR PRO ILE ASP GLU LYS ALA LEU ALA LYS MET ASN SEQRES 19 A 302 GLY TYR GLN LEU ALA THR ILE CYS LEU GLU GLU LEU ASN SEQRES 20 A 302 SER PRO LYS PRO SER PRO LEU ILE GLU ARG ILE LEU SER SEQRES 21 A 302 ASN LYS LYS PHE TRP LYS ARG ILE ASN SER ALA PHE GLU SEQRES 22 A 302 SER GLY VAL PHE LYS GLY ARG THR ASP ASP PRO ALA GLY SEQRES 23 A 302 LYS ILE ALA LYS ILE ARG GLU TRP HIS GLN LEU LEU GLN SEQRES 24 A 302 ILE SER GLY SEQRES 1 B 302 GLU GLU LEU TYR GLN SER ILE LEU GLU LEU LYS PRO LEU SEQRES 2 B 302 THR LEU LEU MET THR SER SER THR SER PHE SER GLU THR SEQRES 3 B 302 ILE ASN GLN TRP ALA ASP ILE LEU LYS THR THR ASP MET SEQRES 4 B 302 GLU LYS PHE SER PHE ASP SER ASN PRO ILE ASN LEU LEU SEQRES 5 B 302 GLU LEU VAL LYS GLN PHE ASN LEU TYR VAL ASP GLU LEU SEQRES 6 B 302 ALA ILE THR CYS GLU ALA ASN ASN VAL TRP ALA LYS GLU SEQRES 7 B 302 ARG ILE ASP SER THR PRO ASN LEU PHE ALA LEU TYR ASP SEQRES 8 B 302 ASN SER GLY GLY GLU ALA ILE HIS GLY HIS ALA PHE VAL SEQRES 9 B 302 PRO TYR TYR LYS GLU SER ILE VAL LEU ARG ARG LEU PHE SEQRES 10 B 302 THR VAL ASP PRO ASN THR PHE ASN LEU SER ARG PHE ALA SEQRES 11 B 302 ALA PHE GLU GLY PRO CYS GLN LEU TYR CYS ALA ALA HIS SEQRES 12 B 302 ALA ASP SER ALA TRP VAL LYS ILE GLN THR LEU LEU THR SEQRES 13 B 302 LEU GLY ASN GLY ILE ILE ASN THR LEU LYS ILE ILE LYS SEQRES 14 B 302 GLN ALA GLN ALA PHE GLY ILE ASP GLU ALA VAL THR GLU SEQRES 15 B 302 ASN LEU LYS ALA LEU LYS GLU GLN PHE ILE ALA PHE GLN SEQRES 16 B 302 LEU ALA GLU ALA ASP ILE LYS GLU SER LEU LYS ALA PRO SEQRES 17 B 302 SER PHE ALA GLU PRO LEU PRO ASN LYS GLU SER GLU PHE SEQRES 18 B 302 PHE TYR PRO ILE ASP GLU LYS ALA LEU ALA LYS MET ASN SEQRES 19 B 302 GLY TYR GLN LEU ALA THR ILE CYS LEU GLU GLU LEU ASN SEQRES 20 B 302 SER PRO LYS PRO SER PRO LEU ILE GLU ARG ILE LEU SER SEQRES 21 B 302 ASN LYS LYS PHE TRP LYS ARG ILE ASN SER ALA PHE GLU SEQRES 22 B 302 SER GLY VAL PHE LYS GLY ARG THR ASP ASP PRO ALA GLY SEQRES 23 B 302 LYS ILE ALA LYS ILE ARG GLU TRP HIS GLN LEU LEU GLN SEQRES 24 B 302 ILE SER GLY SEQRES 1 C 302 GLU GLU LEU TYR GLN SER ILE LEU GLU LEU LYS PRO LEU SEQRES 2 C 302 THR LEU LEU MET THR SER SER THR SER PHE SER GLU THR SEQRES 3 C 302 ILE ASN GLN TRP ALA ASP ILE LEU LYS THR THR ASP MET SEQRES 4 C 302 GLU LYS PHE SER PHE ASP SER ASN PRO ILE ASN LEU LEU SEQRES 5 C 302 GLU LEU VAL LYS GLN PHE ASN LEU TYR VAL ASP GLU LEU SEQRES 6 C 302 ALA ILE THR CYS GLU ALA ASN ASN VAL TRP ALA LYS GLU SEQRES 7 C 302 ARG ILE ASP SER THR PRO ASN LEU PHE ALA LEU TYR ASP SEQRES 8 C 302 ASN SER GLY GLY GLU ALA ILE HIS GLY HIS ALA PHE VAL SEQRES 9 C 302 PRO TYR TYR LYS GLU SER ILE VAL LEU ARG ARG LEU PHE SEQRES 10 C 302 THR VAL ASP PRO ASN THR PHE ASN LEU SER ARG PHE ALA SEQRES 11 C 302 ALA PHE GLU GLY PRO CYS GLN LEU TYR CYS ALA ALA HIS SEQRES 12 C 302 ALA ASP SER ALA TRP VAL LYS ILE GLN THR LEU LEU THR SEQRES 13 C 302 LEU GLY ASN GLY ILE ILE ASN THR LEU LYS ILE ILE LYS SEQRES 14 C 302 GLN ALA GLN ALA PHE GLY ILE ASP GLU ALA VAL THR GLU SEQRES 15 C 302 ASN LEU LYS ALA LEU LYS GLU GLN PHE ILE ALA PHE GLN SEQRES 16 C 302 LEU ALA GLU ALA ASP ILE LYS GLU SER LEU LYS ALA PRO SEQRES 17 C 302 SER PHE ALA GLU PRO LEU PRO ASN LYS GLU SER GLU PHE SEQRES 18 C 302 PHE TYR PRO ILE ASP GLU LYS ALA LEU ALA LYS MET ASN SEQRES 19 C 302 GLY TYR GLN LEU ALA THR ILE CYS LEU GLU GLU LEU ASN SEQRES 20 C 302 SER PRO LYS PRO SER PRO LEU ILE GLU ARG ILE LEU SER SEQRES 21 C 302 ASN LYS LYS PHE TRP LYS ARG ILE ASN SER ALA PHE GLU SEQRES 22 C 302 SER GLY VAL PHE LYS GLY ARG THR ASP ASP PRO ALA GLY SEQRES 23 C 302 LYS ILE ALA LYS ILE ARG GLU TRP HIS GLN LEU LEU GLN SEQRES 24 C 302 ILE SER GLY HET PEG A 701 17 HETNAM PEG DI(HYDROXYETHYL)ETHER FORMUL 4 PEG C4 H10 O3 FORMUL 5 HOH *28(H2 O) HELIX 1 1 SER A 338 THR A 352 1 15 HELIX 2 2 ASN A 366 ASN A 388 1 23 HELIX 3 3 PHE A 403 ASP A 407 5 5 HELIX 4 4 LYS A 424 THR A 434 1 11 HELIX 5 5 PHE A 445 HIS A 459 1 15 HELIX 6 6 SER A 462 PHE A 490 1 29 HELIX 7 7 ASP A 493 LYS A 522 1 30 HELIX 8 8 ASP A 542 MET A 549 1 8 HELIX 9 9 ASN A 550 LEU A 562 1 13 HELIX 10 10 SER A 568 ASN A 577 1 10 HELIX 11 11 PHE A 580 SER A 590 1 11 HELIX 12 12 ASP A 599 GLN A 615 1 17 HELIX 13 13 SER B 338 THR B 352 1 15 HELIX 14 14 ASP B 354 PHE B 358 5 5 HELIX 15 15 ASN B 366 ASN B 388 1 23 HELIX 16 16 PHE B 403 ASP B 407 5 5 HELIX 17 17 LYS B 424 THR B 434 1 11 HELIX 18 18 PHE B 445 HIS B 459 1 15 HELIX 19 19 SER B 462 PHE B 490 1 29 HELIX 20 20 ILE B 492 SER B 520 1 29 HELIX 21 21 ASP B 542 MET B 549 1 8 HELIX 22 22 ASN B 550 LEU B 562 1 13 HELIX 23 23 SER B 568 ASN B 577 1 10 HELIX 24 24 PHE B 580 GLU B 589 1 10 HELIX 25 25 ASP B 599 GLN B 615 1 17 HELIX 26 26 GLU C 318 LEU C 326 1 9 HELIX 27 27 SER C 338 THR C 353 1 16 HELIX 28 28 ASP C 354 GLU C 356 5 3 HELIX 29 29 ASN C 366 ASN C 388 1 23 HELIX 30 30 PHE C 403 ASP C 407 5 5 HELIX 31 31 LYS C 424 PHE C 433 1 10 HELIX 32 32 PHE C 445 HIS C 459 1 15 HELIX 33 33 SER C 462 PHE C 490 1 29 HELIX 34 34 ILE C 492 LYS C 518 1 27 HELIX 35 35 GLU C 519 LYS C 522 5 4 HELIX 36 36 ASP C 542 MET C 549 1 8 HELIX 37 37 ASN C 550 LEU C 562 1 13 HELIX 38 38 SER C 568 ASN C 577 1 10 HELIX 39 39 ASN C 577 GLY C 591 1 15 HELIX 40 40 ASP C 599 ILE C 616 1 18 SHEET 1 A 2 ALA A 413 ILE A 414 0 SHEET 2 A 2 HIS A 417 ALA A 418 -1 O HIS A 417 N ILE A 414 SHEET 1 B 2 PRO B 328 LEU B 329 0 SHEET 2 B 2 SER B 359 PHE B 360 1 O SER B 359 N LEU B 329 SHEET 1 C 2 ALA B 413 ILE B 414 0 SHEET 2 C 2 HIS B 417 ALA B 418 -1 O HIS B 417 N ILE B 414 SHEET 1 D 2 LYS C 327 LEU C 329 0 SHEET 2 D 2 PHE C 358 PHE C 360 1 O SER C 359 N LYS C 327 SITE 1 AC1 2 GLU A 536 ASN A 563 CRYST1 152.700 152.700 129.500 90.00 90.00 90.00 P 42 21 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006549 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006549 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007722 0.00000