HEADER TRANSFERASE 21-NOV-12 4I1U TITLE APO CRYSTAL STRUCTURE OF A DEPHOSPHO-COA KINASE FROM BURKHOLDERIA TITLE 2 VIETNAMIENSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: DEPHOSPHO-COA KINASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: DEPHOSPHO-COA KINASE, DEPHOSPHOCOENZYME A KINASE; COMPND 5 EC: 2.7.1.24; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BURKHOLDERIA VIETNAMIENSIS; SOURCE 3 ORGANISM_TAXID: 269482; SOURCE 4 STRAIN: G4; SOURCE 5 GENE: BCEP1808_0550, COAE; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PAVA0421 KEYWDS STRUCTURAL GENOMICS, NIAID, NATIONAL INSTITUTE OF ALLERGY AND KEYWDS 2 INFECTIOUS DISEASES, SEATTLE STRUCTURAL GENOMICS CENTER FOR KEYWDS 3 INFECTIOUS DISEASE, SSGCID, NATIONAL INSTITUTE FOR ALLERGY AND KEYWDS 4 INFECTIOUS DISEASE, COENZYME A, BIOSYNTHESIS, KINASE, ATP-DEPENDENT, KEYWDS 5 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 2 20-SEP-23 4I1U 1 REMARK SEQADV REVDAT 1 09-JAN-13 4I1U 0 JRNL AUTH T.E.EDWARDS,J.ABENDROTH, JRNL AUTH 2 SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE JRNL AUTH 3 (SSGCID) JRNL TITL APO CRYSTAL STRUCTURE OF A DEPHOSPHO-COA KINASE FROM JRNL TITL 2 BURKHOLDERIA VIETNAMIENSIS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.02 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 44196 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2234 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.10 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3033 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.46 REMARK 3 BIN R VALUE (WORKING SET) : 0.2270 REMARK 3 BIN FREE R VALUE SET COUNT : 156 REMARK 3 BIN FREE R VALUE : 0.2600 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3052 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 55 REMARK 3 SOLVENT ATOMS : 296 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 34.92 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.51 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.22000 REMARK 3 B22 (A**2) : 0.22000 REMARK 3 B33 (A**2) : -0.71000 REMARK 3 B12 (A**2) : 0.22000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.148 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.140 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.096 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.662 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.932 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3219 ; 0.013 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3115 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4396 ; 1.460 ; 1.967 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7082 ; 0.810 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 425 ; 5.761 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 145 ;35.287 ;21.793 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 499 ;14.206 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 43 ;19.725 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 521 ; 0.085 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3693 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 760 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -2 A 202 REMARK 3 ORIGIN FOR THE GROUP (A): 69.3133 28.6358 -12.1601 REMARK 3 T TENSOR REMARK 3 T11: 0.0252 T22: 0.0509 REMARK 3 T33: 0.0856 T12: -0.0175 REMARK 3 T13: 0.0025 T23: 0.0313 REMARK 3 L TENSOR REMARK 3 L11: 0.2530 L22: 0.9967 REMARK 3 L33: 0.6131 L12: 0.3330 REMARK 3 L13: -0.2655 L23: -0.0798 REMARK 3 S TENSOR REMARK 3 S11: 0.0165 S12: -0.0071 S13: 0.0028 REMARK 3 S21: 0.0366 S22: -0.0769 S23: -0.0981 REMARK 3 S31: 0.0190 S32: 0.0038 S33: 0.0605 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 0 B 201 REMARK 3 ORIGIN FOR THE GROUP (A): 79.4708 46.3588 11.8726 REMARK 3 T TENSOR REMARK 3 T11: 0.0999 T22: 0.0861 REMARK 3 T33: 0.0324 T12: -0.0857 REMARK 3 T13: 0.0076 T23: -0.0068 REMARK 3 L TENSOR REMARK 3 L11: 1.1617 L22: 0.5066 REMARK 3 L33: 0.0067 L12: 0.5920 REMARK 3 L13: 0.0311 L23: -0.0183 REMARK 3 S TENSOR REMARK 3 S11: -0.0052 S12: -0.1079 S13: 0.0650 REMARK 3 S21: -0.0592 S22: 0.0107 S23: 0.0987 REMARK 3 S31: 0.0129 S32: -0.0166 S33: -0.0055 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED HYDROGENS REMARK 3 HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 4 REMARK 4 4I1U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-NOV-12. REMARK 100 THE DEPOSITION ID IS D_1000076197. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-AUG-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E+ SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : VARIMAX REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944+ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44198 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 10.30 REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.9400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.41700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.570 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.1 REMARK 200 STARTING MODEL: 1VHL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.83 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: BUVIA.00139.A.B1 PS01581 AT 26.1 MG/ML REMARK 280 AGAINST MCSG 1 SCREEN CONDITION G5, 2 M AMMONIUM SULFATE, 0.1 M REMARK 280 BISTRIS PH 6.5, WITH 20% ETHYLENE GLYCOL AS CRYO-PROTECTANT, REMARK 280 CRYSTAL TRACKING ID 236782G5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.98000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 29.99000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 29.99000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 59.98000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18470 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -123.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 535 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 ALA A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 MET B -7 REMARK 465 ALA B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 202 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 118 CG CD NE CZ NH1 NH2 REMARK 470 MET A 142 CG SD CE REMARK 470 GLN A 143 CG CD OE1 NE2 REMARK 470 THR A 148 OG1 CG2 REMARK 470 ARG A 149 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 150 CG CD OE1 OE2 REMARK 470 VAL A 152 CG1 CG2 REMARK 470 ARG A 158 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 118 CG CD NE CZ NH1 NH2 REMARK 470 MET B 142 CG SD CE REMARK 470 ASN B 145 CG OD1 ND2 REMARK 470 THR B 148 OG1 CG2 REMARK 470 GLU B 150 CG CD OE1 OE2 REMARK 470 GLN B 151 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 529 O HOH A 530 2.13 REMARK 500 OE1 GLN B 159 O HOH B 539 2.18 REMARK 500 OD1 ASP B 181 O HOH B 521 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS B 132 CA - CB - SG ANGL. DEV. = 6.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 113 56.57 -102.42 REMARK 500 ASN A 175 77.27 -114.05 REMARK 500 ASP A 176 -85.12 -109.45 REMARK 500 ALA B 42 19.45 56.01 REMARK 500 LEU B 113 44.43 -102.15 REMARK 500 ARG B 144 -81.85 -86.79 REMARK 500 ARG B 149 -16.28 -46.86 REMARK 500 ASN B 175 71.45 -119.57 REMARK 500 ASP B 176 -88.09 -103.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 308 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4I1V RELATED DB: PDB REMARK 900 ADP-BOUND FORM REMARK 900 RELATED ID: SSGCID-BUVIA.00139.A RELATED DB: TARGETTRACK DBREF 4I1U A 1 202 UNP A4JBA9 A4JBA9_BURVG 1 202 DBREF 4I1U B 1 202 UNP A4JBA9 A4JBA9_BURVG 1 202 SEQADV 4I1U MET A -7 UNP A4JBA9 EXPRESSION TAG SEQADV 4I1U ALA A -6 UNP A4JBA9 EXPRESSION TAG SEQADV 4I1U HIS A -5 UNP A4JBA9 EXPRESSION TAG SEQADV 4I1U HIS A -4 UNP A4JBA9 EXPRESSION TAG SEQADV 4I1U HIS A -3 UNP A4JBA9 EXPRESSION TAG SEQADV 4I1U HIS A -2 UNP A4JBA9 EXPRESSION TAG SEQADV 4I1U HIS A -1 UNP A4JBA9 EXPRESSION TAG SEQADV 4I1U HIS A 0 UNP A4JBA9 EXPRESSION TAG SEQADV 4I1U MET B -7 UNP A4JBA9 EXPRESSION TAG SEQADV 4I1U ALA B -6 UNP A4JBA9 EXPRESSION TAG SEQADV 4I1U HIS B -5 UNP A4JBA9 EXPRESSION TAG SEQADV 4I1U HIS B -4 UNP A4JBA9 EXPRESSION TAG SEQADV 4I1U HIS B -3 UNP A4JBA9 EXPRESSION TAG SEQADV 4I1U HIS B -2 UNP A4JBA9 EXPRESSION TAG SEQADV 4I1U HIS B -1 UNP A4JBA9 EXPRESSION TAG SEQADV 4I1U HIS B 0 UNP A4JBA9 EXPRESSION TAG SEQRES 1 A 210 MET ALA HIS HIS HIS HIS HIS HIS MET TYR ALA ILE GLY SEQRES 2 A 210 LEU THR GLY GLY ILE GLY SER GLY LYS THR THR VAL ALA SEQRES 3 A 210 ASP LEU PHE ALA ALA ARG GLY ALA SER LEU VAL ASP THR SEQRES 4 A 210 ASP LEU ILE ALA HIS ARG ILE THR ALA PRO ALA GLY LEU SEQRES 5 A 210 ALA MET PRO ALA ILE GLU GLN THR PHE GLY PRO ALA PHE SEQRES 6 A 210 VAL ALA ALA ASP GLY SER LEU ASP ARG ALA ARG MET ARG SEQRES 7 A 210 ALA LEU ILE PHE SER ASP GLU ASP ALA ARG ARG ARG LEU SEQRES 8 A 210 GLU ALA ILE THR HIS PRO LEU ILE ARG ALA GLU THR GLU SEQRES 9 A 210 ARG GLU ALA ARG ASP ALA GLN GLY PRO TYR VAL ILE PHE SEQRES 10 A 210 VAL VAL PRO LEU LEU VAL GLU SER ARG ASN TRP LYS ALA SEQRES 11 A 210 ARG CYS ASP ARG VAL LEU VAL VAL ASP CYS PRO VAL ASP SEQRES 12 A 210 THR GLN ILE ALA ARG VAL MET GLN ARG ASN GLY PHE THR SEQRES 13 A 210 ARG GLU GLN VAL GLU ALA ILE ILE ALA ARG GLN ALA THR SEQRES 14 A 210 ARG GLU ALA ARG LEU ALA ALA ALA ASP ASP VAL ILE VAL SEQRES 15 A 210 ASN ASP ALA ALA THR PRO ASP ALA LEU ALA VAL GLN VAL SEQRES 16 A 210 ASP ALA LEU HIS GLN ARG TYR LEU ALA PHE ALA ALA ALA SEQRES 17 A 210 LYS HIS SEQRES 1 B 210 MET ALA HIS HIS HIS HIS HIS HIS MET TYR ALA ILE GLY SEQRES 2 B 210 LEU THR GLY GLY ILE GLY SER GLY LYS THR THR VAL ALA SEQRES 3 B 210 ASP LEU PHE ALA ALA ARG GLY ALA SER LEU VAL ASP THR SEQRES 4 B 210 ASP LEU ILE ALA HIS ARG ILE THR ALA PRO ALA GLY LEU SEQRES 5 B 210 ALA MET PRO ALA ILE GLU GLN THR PHE GLY PRO ALA PHE SEQRES 6 B 210 VAL ALA ALA ASP GLY SER LEU ASP ARG ALA ARG MET ARG SEQRES 7 B 210 ALA LEU ILE PHE SER ASP GLU ASP ALA ARG ARG ARG LEU SEQRES 8 B 210 GLU ALA ILE THR HIS PRO LEU ILE ARG ALA GLU THR GLU SEQRES 9 B 210 ARG GLU ALA ARG ASP ALA GLN GLY PRO TYR VAL ILE PHE SEQRES 10 B 210 VAL VAL PRO LEU LEU VAL GLU SER ARG ASN TRP LYS ALA SEQRES 11 B 210 ARG CYS ASP ARG VAL LEU VAL VAL ASP CYS PRO VAL ASP SEQRES 12 B 210 THR GLN ILE ALA ARG VAL MET GLN ARG ASN GLY PHE THR SEQRES 13 B 210 ARG GLU GLN VAL GLU ALA ILE ILE ALA ARG GLN ALA THR SEQRES 14 B 210 ARG GLU ALA ARG LEU ALA ALA ALA ASP ASP VAL ILE VAL SEQRES 15 B 210 ASN ASP ALA ALA THR PRO ASP ALA LEU ALA VAL GLN VAL SEQRES 16 B 210 ASP ALA LEU HIS GLN ARG TYR LEU ALA PHE ALA ALA ALA SEQRES 17 B 210 LYS HIS HET SO4 A 301 5 HET SO4 A 302 5 HET SO4 A 303 5 HET CL A 304 1 HET SO4 B 301 5 HET SO4 B 302 5 HET SO4 B 303 5 HET SO4 B 304 5 HET SO4 B 305 5 HET SO4 B 306 5 HET SO4 B 307 5 HET EDO B 308 4 HETNAM SO4 SULFATE ION HETNAM CL CHLORIDE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 SO4 10(O4 S 2-) FORMUL 6 CL CL 1- FORMUL 14 EDO C2 H6 O2 FORMUL 15 HOH *296(H2 O) HELIX 1 1 GLY A 13 ARG A 24 1 12 HELIX 2 2 THR A 31 THR A 39 1 9 HELIX 3 3 ALA A 45 GLY A 54 1 10 HELIX 4 4 PRO A 55 VAL A 58 5 4 HELIX 5 5 ASP A 65 ASP A 76 1 12 HELIX 6 6 ASP A 76 ASP A 101 1 26 HELIX 7 7 SER A 117 CYS A 124 1 8 HELIX 8 8 PRO A 133 GLY A 146 1 14 HELIX 9 9 THR A 148 GLN A 159 1 12 HELIX 10 10 THR A 161 ALA A 168 1 8 HELIX 11 11 THR A 179 HIS A 202 1 24 HELIX 12 12 GLY B 13 ARG B 24 1 12 HELIX 13 13 THR B 31 THR B 39 1 9 HELIX 14 14 ALA B 45 GLY B 54 1 10 HELIX 15 15 PRO B 55 VAL B 58 5 4 HELIX 16 16 ASP B 65 ASP B 76 1 12 HELIX 17 17 ASP B 76 ALA B 102 1 27 HELIX 18 18 SER B 117 CYS B 124 1 8 HELIX 19 19 PRO B 133 GLY B 146 1 14 HELIX 20 20 THR B 148 GLN B 159 1 12 HELIX 21 21 THR B 161 ALA B 168 1 8 HELIX 22 22 THR B 179 LYS B 201 1 23 SHEET 1 A 5 SER A 27 ASP A 30 0 SHEET 2 A 5 VAL A 107 VAL A 110 1 O ILE A 108 N VAL A 29 SHEET 3 A 5 ALA A 3 THR A 7 1 N LEU A 6 O PHE A 109 SHEET 4 A 5 ARG A 126 ASP A 131 1 O LEU A 128 N GLY A 5 SHEET 5 A 5 ASP A 171 VAL A 174 1 O ILE A 173 N ASP A 131 SHEET 1 B 5 SER B 27 ASP B 30 0 SHEET 2 B 5 VAL B 107 VAL B 110 1 O VAL B 110 N VAL B 29 SHEET 3 B 5 ALA B 3 THR B 7 1 N LEU B 6 O PHE B 109 SHEET 4 B 5 ARG B 126 ASP B 131 1 O LEU B 128 N GLY B 5 SHEET 5 B 5 ASP B 171 VAL B 174 1 O ASP B 171 N VAL B 129 SITE 1 AC1 7 GLY A 9 GLY A 11 SER A 12 GLY A 13 SITE 2 AC1 7 LYS A 14 ARG A 144 HOH A 442 SITE 1 AC2 2 ARG A 80 ARG A 81 SITE 1 AC3 3 ARG A 97 ARG A 100 ARG B 37 SITE 1 AC4 6 ARG A 37 ILE A 38 GLY A 43 LEU A 44 SITE 2 AC4 6 HOH A 524 HOH B 537 SITE 1 AC5 6 HIS B 88 ARG B 92 SER B 117 TRP B 120 SITE 2 AC5 6 HOH B 426 HOH B 480 SITE 1 AC6 7 GLY B 9 GLY B 11 SER B 12 GLY B 13 SITE 2 AC6 7 LYS B 14 ARG B 144 HOH B 524 SITE 1 AC7 3 SER B 27 ALA B 102 GLN B 103 SITE 1 AC8 3 ARG B 68 ARG B 97 HOH B 553 SITE 1 AC9 3 ARG A 126 HOH A 458 ARG B 126 SITE 1 BC1 3 ARG B 140 ASP B 176 HOH B 519 SITE 1 BC2 2 ARG B 80 ARG B 81 SITE 1 BC3 5 GLN B 137 GLN B 159 ALA B 160 ARG B 162 SITE 2 BC3 5 ARG B 165 CRYST1 116.420 116.420 89.970 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008590 0.004959 0.000000 0.00000 SCALE2 0.000000 0.009918 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011115 0.00000