HEADER TRANSFERASE 21-NOV-12 4I1V TITLE CRYSTAL STRUCTURE OF A DEPHOSPHO-COA KINASE FROM BURKHOLDERIA TITLE 2 VIETNAMIENSIS BOUND TO ADP COMPND MOL_ID: 1; COMPND 2 MOLECULE: DEPHOSPHO-COA KINASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: DEPHOSPHO-COA KINASE, DEPHOSPHOCOENZYME A KINASE; COMPND 5 EC: 2.7.1.24; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BURKHOLDERIA VIETNAMIENSIS; SOURCE 3 ORGANISM_TAXID: 269482; SOURCE 4 STRAIN: G4; SOURCE 5 GENE: BCEP1808_0550, COAE; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PAVA0421 KEYWDS STRUCTURAL GENOMICS, NIAID, NATIONAL INSTITUTE OF ALLERGY AND KEYWDS 2 INFECTIOUS DISEASES, SEATTLE STRUCTURAL GENOMICS CENTER FOR KEYWDS 3 INFECTIOUS DISEASE, SSGCID, NATIONAL INSTITUTE FOR ALLERGY AND KEYWDS 4 INFECTIOUS DISEASE, ATP-DEPENDENT, TRANSFERASE, ADP, COA, COD EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 2 20-SEP-23 4I1V 1 REMARK SEQADV REVDAT 1 09-JAN-13 4I1V 0 JRNL AUTH T.E.EDWARDS,M.C.CLIFTON,B.SANKARAN, JRNL AUTH 2 SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE JRNL AUTH 3 (SSGCID) JRNL TITL CRYSTAL STRUCTURE OF A DEPHOSPHO-COA KINASE FROM JRNL TITL 2 BURKHOLDERIA VIETNAMIENSIS BOUND TO ADP JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.04 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 22169 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.215 REMARK 3 R VALUE (WORKING SET) : 0.213 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1130 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1538 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.81 REMARK 3 BIN R VALUE (WORKING SET) : 0.3320 REMARK 3 BIN FREE R VALUE SET COUNT : 76 REMARK 3 BIN FREE R VALUE : 0.3900 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2963 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 54 REMARK 3 SOLVENT ATOMS : 53 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 59.11 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 63.84 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.69000 REMARK 3 B22 (A**2) : 0.69000 REMARK 3 B33 (A**2) : -2.24000 REMARK 3 B12 (A**2) : 0.69000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.334 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.255 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.196 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 18.635 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.943 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.920 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3067 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2885 ; 0.004 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4203 ; 1.469 ; 1.970 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6543 ; 0.954 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 407 ; 5.813 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 124 ;37.442 ;23.065 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 426 ;15.117 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;12.708 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 508 ; 0.074 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3553 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 693 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 0 200 B 0 200 10592 0.080 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -4 A 202 REMARK 3 RESIDUE RANGE : A 301 A 301 REMARK 3 ORIGIN FOR THE GROUP (A): 68.4453 28.4372 -13.5203 REMARK 3 T TENSOR REMARK 3 T11: 0.1746 T22: 0.2486 REMARK 3 T33: 0.2252 T12: -0.0380 REMARK 3 T13: 0.0472 T23: 0.0494 REMARK 3 L TENSOR REMARK 3 L11: 0.6387 L22: 2.4356 REMARK 3 L33: 1.3041 L12: 0.7698 REMARK 3 L13: 0.1628 L23: -0.2220 REMARK 3 S TENSOR REMARK 3 S11: 0.1582 S12: -0.0292 S13: 0.1408 REMARK 3 S21: 0.0410 S22: -0.5481 S23: -0.0591 REMARK 3 S31: 0.0685 S32: 0.1777 S33: 0.3899 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 0 B 201 REMARK 3 RESIDUE RANGE : B 301 B 301 REMARK 3 ORIGIN FOR THE GROUP (A): 78.9977 47.1184 12.2161 REMARK 3 T TENSOR REMARK 3 T11: 0.3053 T22: 0.2400 REMARK 3 T33: 0.2327 T12: -0.2211 REMARK 3 T13: 0.0756 T23: -0.1340 REMARK 3 L TENSOR REMARK 3 L11: 1.5309 L22: 1.5907 REMARK 3 L33: 0.0875 L12: 1.5069 REMARK 3 L13: 0.0846 L23: 0.0029 REMARK 3 S TENSOR REMARK 3 S11: -0.1790 S12: -0.1482 S13: 0.1325 REMARK 3 S21: -0.3551 S22: 0.0254 S23: 0.0298 REMARK 3 S31: 0.0855 S32: -0.1134 S33: 0.1535 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED HYDROGENS REMARK 3 HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 4 REMARK 4 4I1V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-NOV-12. REMARK 100 THE DEPOSITION ID IS D_1000076198. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-OCT-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9774 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22169 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 5.200 REMARK 200 R MERGE (I) : 0.04600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 26.1800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.67 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.50000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.1 REMARK 200 STARTING MODEL: 4I1U REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: BUVIA.00139.A.B1 PS01581 AT 26.1 MG/ML REMARK 280 WITH 2 MM ADP AGAINST MORPHEUS SCREEN CONDITION F1, 10% PEG 20, REMARK 280 000, 20% PEG 550 MME, 0.02 M EACH MONOSACCHARIDE, 0.1 M MES/ REMARK 280 IMIDAZOLE PH 6.5, CRYSTAL TRACKING ID 237917F1, UNIQUE PUCK ID REMARK 280 BEH5-16, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.09333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 30.54667 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 30.54667 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 61.09333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 ALA A -6 REMARK 465 HIS A -5 REMARK 465 MET B -7 REMARK 465 ALA B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 202 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A -4 CG ND1 CD2 CE1 NE2 REMARK 470 HIS A -2 CG ND1 CD2 CE1 NE2 REMARK 470 MET A 1 CG SD CE REMARK 470 LEU A 44 CG CD1 CD2 REMARK 470 ASP A 65 CG OD1 OD2 REMARK 470 ARG A 68 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 70 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 72 CG CD1 CD2 REMARK 470 ILE A 73 CG1 CG2 CD1 REMARK 470 PHE A 74 CG CD1 CD2 CE1 CE2 CZ REMARK 470 SER A 75 OG REMARK 470 GLU A 77 CG CD OE1 OE2 REMARK 470 ASP A 78 CG OD1 OD2 REMARK 470 ARG A 80 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 81 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 82 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 92 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 118 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 121 CG CD CE NZ REMARK 470 ARG A 144 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 158 CG CD NE CZ NH1 NH2 REMARK 470 HIS B 0 CG ND1 CD2 CE1 NE2 REMARK 470 ARG B 70 CG CD NE CZ NH1 NH2 REMARK 470 PHE B 74 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASP B 76 CG OD1 OD2 REMARK 470 GLU B 77 CG CD OE1 OE2 REMARK 470 ASP B 78 CG OD1 OD2 REMARK 470 ARG B 80 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 81 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 103 CG CD OE1 NE2 REMARK 470 ARG B 118 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 121 CG CD CE NZ REMARK 470 GLU B 150 CG CD OE1 OE2 REMARK 470 ARG B 158 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 201 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O3B ADP A 301 O HOH A 421 2.15 REMARK 500 OE1 GLN B 159 O HOH B 421 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A -2 114.33 156.27 REMARK 500 LEU A 113 44.54 -104.35 REMARK 500 ASN A 175 78.76 -110.34 REMARK 500 LEU B 113 45.22 -102.68 REMARK 500 ASN B 175 78.75 -108.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP B 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4I1U RELATED DB: PDB REMARK 900 APO/SULFATE BOUND STRUCTURE REMARK 900 RELATED ID: SSGCID-BUVIA.00139.A RELATED DB: TARGETTRACK DBREF 4I1V A 1 202 UNP A4JBA9 A4JBA9_BURVG 1 202 DBREF 4I1V B 1 202 UNP A4JBA9 A4JBA9_BURVG 1 202 SEQADV 4I1V MET A -7 UNP A4JBA9 EXPRESSION TAG SEQADV 4I1V ALA A -6 UNP A4JBA9 EXPRESSION TAG SEQADV 4I1V HIS A -5 UNP A4JBA9 EXPRESSION TAG SEQADV 4I1V HIS A -4 UNP A4JBA9 EXPRESSION TAG SEQADV 4I1V HIS A -3 UNP A4JBA9 EXPRESSION TAG SEQADV 4I1V HIS A -2 UNP A4JBA9 EXPRESSION TAG SEQADV 4I1V HIS A -1 UNP A4JBA9 EXPRESSION TAG SEQADV 4I1V HIS A 0 UNP A4JBA9 EXPRESSION TAG SEQADV 4I1V MET B -7 UNP A4JBA9 EXPRESSION TAG SEQADV 4I1V ALA B -6 UNP A4JBA9 EXPRESSION TAG SEQADV 4I1V HIS B -5 UNP A4JBA9 EXPRESSION TAG SEQADV 4I1V HIS B -4 UNP A4JBA9 EXPRESSION TAG SEQADV 4I1V HIS B -3 UNP A4JBA9 EXPRESSION TAG SEQADV 4I1V HIS B -2 UNP A4JBA9 EXPRESSION TAG SEQADV 4I1V HIS B -1 UNP A4JBA9 EXPRESSION TAG SEQADV 4I1V HIS B 0 UNP A4JBA9 EXPRESSION TAG SEQRES 1 A 210 MET ALA HIS HIS HIS HIS HIS HIS MET TYR ALA ILE GLY SEQRES 2 A 210 LEU THR GLY GLY ILE GLY SER GLY LYS THR THR VAL ALA SEQRES 3 A 210 ASP LEU PHE ALA ALA ARG GLY ALA SER LEU VAL ASP THR SEQRES 4 A 210 ASP LEU ILE ALA HIS ARG ILE THR ALA PRO ALA GLY LEU SEQRES 5 A 210 ALA MET PRO ALA ILE GLU GLN THR PHE GLY PRO ALA PHE SEQRES 6 A 210 VAL ALA ALA ASP GLY SER LEU ASP ARG ALA ARG MET ARG SEQRES 7 A 210 ALA LEU ILE PHE SER ASP GLU ASP ALA ARG ARG ARG LEU SEQRES 8 A 210 GLU ALA ILE THR HIS PRO LEU ILE ARG ALA GLU THR GLU SEQRES 9 A 210 ARG GLU ALA ARG ASP ALA GLN GLY PRO TYR VAL ILE PHE SEQRES 10 A 210 VAL VAL PRO LEU LEU VAL GLU SER ARG ASN TRP LYS ALA SEQRES 11 A 210 ARG CYS ASP ARG VAL LEU VAL VAL ASP CYS PRO VAL ASP SEQRES 12 A 210 THR GLN ILE ALA ARG VAL MET GLN ARG ASN GLY PHE THR SEQRES 13 A 210 ARG GLU GLN VAL GLU ALA ILE ILE ALA ARG GLN ALA THR SEQRES 14 A 210 ARG GLU ALA ARG LEU ALA ALA ALA ASP ASP VAL ILE VAL SEQRES 15 A 210 ASN ASP ALA ALA THR PRO ASP ALA LEU ALA VAL GLN VAL SEQRES 16 A 210 ASP ALA LEU HIS GLN ARG TYR LEU ALA PHE ALA ALA ALA SEQRES 17 A 210 LYS HIS SEQRES 1 B 210 MET ALA HIS HIS HIS HIS HIS HIS MET TYR ALA ILE GLY SEQRES 2 B 210 LEU THR GLY GLY ILE GLY SER GLY LYS THR THR VAL ALA SEQRES 3 B 210 ASP LEU PHE ALA ALA ARG GLY ALA SER LEU VAL ASP THR SEQRES 4 B 210 ASP LEU ILE ALA HIS ARG ILE THR ALA PRO ALA GLY LEU SEQRES 5 B 210 ALA MET PRO ALA ILE GLU GLN THR PHE GLY PRO ALA PHE SEQRES 6 B 210 VAL ALA ALA ASP GLY SER LEU ASP ARG ALA ARG MET ARG SEQRES 7 B 210 ALA LEU ILE PHE SER ASP GLU ASP ALA ARG ARG ARG LEU SEQRES 8 B 210 GLU ALA ILE THR HIS PRO LEU ILE ARG ALA GLU THR GLU SEQRES 9 B 210 ARG GLU ALA ARG ASP ALA GLN GLY PRO TYR VAL ILE PHE SEQRES 10 B 210 VAL VAL PRO LEU LEU VAL GLU SER ARG ASN TRP LYS ALA SEQRES 11 B 210 ARG CYS ASP ARG VAL LEU VAL VAL ASP CYS PRO VAL ASP SEQRES 12 B 210 THR GLN ILE ALA ARG VAL MET GLN ARG ASN GLY PHE THR SEQRES 13 B 210 ARG GLU GLN VAL GLU ALA ILE ILE ALA ARG GLN ALA THR SEQRES 14 B 210 ARG GLU ALA ARG LEU ALA ALA ALA ASP ASP VAL ILE VAL SEQRES 15 B 210 ASN ASP ALA ALA THR PRO ASP ALA LEU ALA VAL GLN VAL SEQRES 16 B 210 ASP ALA LEU HIS GLN ARG TYR LEU ALA PHE ALA ALA ALA SEQRES 17 B 210 LYS HIS HET ADP A 301 27 HET ADP B 301 27 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE FORMUL 3 ADP 2(C10 H15 N5 O10 P2) FORMUL 5 HOH *53(H2 O) HELIX 1 1 GLY A 13 ARG A 24 1 12 HELIX 2 2 THR A 31 ILE A 38 1 8 HELIX 3 3 ALA A 45 GLY A 54 1 10 HELIX 4 4 PRO A 55 VAL A 58 5 4 HELIX 5 5 ASP A 65 ASP A 76 1 12 HELIX 6 6 ASP A 76 ALA A 102 1 27 HELIX 7 7 SER A 117 CYS A 124 1 8 HELIX 8 8 PRO A 133 GLY A 146 1 14 HELIX 9 9 THR A 148 GLN A 159 1 12 HELIX 10 10 THR A 161 ALA A 168 1 8 HELIX 11 11 ALA A 182 ALA A 200 1 19 HELIX 12 12 GLY B 13 ARG B 24 1 12 HELIX 13 13 THR B 31 ILE B 38 1 8 HELIX 14 14 ALA B 45 GLY B 54 1 10 HELIX 15 15 PRO B 55 VAL B 58 5 4 HELIX 16 16 ASP B 65 ASP B 76 1 12 HELIX 17 17 ASP B 76 ALA B 102 1 27 HELIX 18 18 SER B 117 CYS B 124 1 8 HELIX 19 19 PRO B 133 GLY B 146 1 14 HELIX 20 20 THR B 148 GLN B 159 1 12 HELIX 21 21 THR B 161 ALA B 168 1 8 HELIX 22 22 ALA B 182 ALA B 200 1 19 SHEET 1 A 5 SER A 27 ASP A 30 0 SHEET 2 A 5 VAL A 107 VAL A 110 1 O ILE A 108 N SER A 27 SHEET 3 A 5 ALA A 3 THR A 7 1 N ILE A 4 O PHE A 109 SHEET 4 A 5 ARG A 126 ASP A 131 1 O LEU A 128 N GLY A 5 SHEET 5 A 5 ASP A 171 VAL A 174 1 O ASP A 171 N VAL A 129 SHEET 1 B 5 SER B 27 ASP B 30 0 SHEET 2 B 5 VAL B 107 VAL B 110 1 O ILE B 108 N SER B 27 SHEET 3 B 5 ALA B 3 THR B 7 1 N ILE B 4 O PHE B 109 SHEET 4 B 5 ARG B 126 ASP B 131 1 O LEU B 128 N GLY B 5 SHEET 5 B 5 ASP B 171 VAL B 174 1 O ASP B 171 N VAL B 129 SITE 1 AC1 15 GLY A 9 GLY A 11 SER A 12 GLY A 13 SITE 2 AC1 15 LYS A 14 THR A 15 THR A 16 ARG A 140 SITE 3 AC1 15 ASN A 175 ALA A 177 ALA A 178 THR A 179 SITE 4 AC1 15 PRO A 180 HOH A 421 HOH A 430 SITE 1 AC2 14 GLY B 9 GLY B 11 SER B 12 GLY B 13 SITE 2 AC2 14 LYS B 14 THR B 15 THR B 16 ARG B 140 SITE 3 AC2 14 ARG B 144 ASN B 175 ALA B 177 ALA B 178 SITE 4 AC2 14 THR B 179 PRO B 180 CRYST1 115.860 115.860 91.640 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008631 0.004983 0.000000 0.00000 SCALE2 0.000000 0.009966 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010912 0.00000