HEADER TRANSCRIPTION REGULATOR/DNA 30-NOV-12 4I6Z TITLE CRYSTAL STRUCTURE OF THE TRANSCRIPTIONAL REGULATOR TM1030 WITH 24BP TITLE 2 DNA OLIGONUCLEOTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTIONAL REGULATOR, TETR FAMILY; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA OLIGONUCLEOTIDE; COMPND 7 CHAIN: C, D; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 3 ORGANISM_TAXID: 243274; SOURCE 4 STRAIN: ATCC 43589 / MSB8 / DSM 3109 / JCM 10099; SOURCE 5 GENE: TM1030, TM_1030; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-GOLD (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET15B; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 14 ORGANISM_TAXID: 32630; SOURCE 15 OTHER_DETAILS: SYNTHESIZED DNA KEYWDS STRUCTURAL GENOMICS, PSI-BIOLOGY, MIDWEST CENTER FOR STRUCTURAL KEYWDS 2 GENOMICS, MCSG, PFAM TETR_N, HELIX-TURN-HELIX, TRANSCRIPTIONAL KEYWDS 3 REGULATOR, DNA BINDING, TRANSCRIPTION REGULATOR-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR K.D.KOCLEGA,M.CHRUSZCZ,D.R.COOPER,J.J.PETKOWSKI,K.L.TKACZUK, AUTHOR 2 A.JOACHIMIAK,W.MINOR,MIDWEST CENTER FOR STRUCTURAL GENOMICS (MCSG) REVDAT 7 06-DEC-23 4I6Z 1 REMARK REVDAT 6 20-SEP-23 4I6Z 1 REMARK REVDAT 5 13-APR-22 4I6Z 1 AUTHOR JRNL SEQADV LINK REVDAT 4 15-NOV-17 4I6Z 1 REMARK REVDAT 3 27-MAY-15 4I6Z 1 SOURCE REVDAT 2 20-MAY-15 4I6Z 1 REMARK REVDAT 1 02-JAN-13 4I6Z 0 JRNL AUTH K.D.KOCLEGA,M.CHRUSZCZ,D.R.COOPER,J.J.PETKOWSKI,K.L.TKACZUK, JRNL AUTH 2 A.JOACHIMIAK,W.MINOR JRNL TITL CRYSTAL STRUCTURE OF THE TRANSCRIPTIONAL REGULATOR TM1030 JRNL TITL 2 WITH 24BP DNA OLIGONUCLEOTIDE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.23 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 11471 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.268 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 549 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.28 REMARK 3 REFLECTION IN BIN (WORKING SET) : 805 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2530 REMARK 3 BIN FREE R VALUE SET COUNT : 36 REMARK 3 BIN FREE R VALUE : 0.4290 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3112 REMARK 3 NUCLEIC ACID ATOMS : 488 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 6 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 82.39 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.58000 REMARK 3 B22 (A**2) : -1.13000 REMARK 3 B33 (A**2) : 0.92000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.83000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.500 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.391 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 36.056 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.908 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3718 ; 0.013 ; 0.018 REMARK 3 BOND LENGTHS OTHERS (A): 3205 ; 0.004 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5127 ; 1.651 ; 1.847 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7324 ; 1.072 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 398 ; 6.024 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 143 ;36.633 ;23.986 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 481 ;18.962 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;21.684 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 558 ; 0.081 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3888 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 864 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 1 200 B 1 200 10535 0.080 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 200 REMARK 3 ORIGIN FOR THE GROUP (A): 31.3230 9.2920 4.2830 REMARK 3 T TENSOR REMARK 3 T11: 0.0524 T22: 0.0569 REMARK 3 T33: 0.0992 T12: -0.0362 REMARK 3 T13: -0.0001 T23: -0.0208 REMARK 3 L TENSOR REMARK 3 L11: 1.1245 L22: 0.5349 REMARK 3 L33: 1.0597 L12: -0.7534 REMARK 3 L13: 0.1349 L23: -0.1813 REMARK 3 S TENSOR REMARK 3 S11: -0.0989 S12: 0.1082 S13: 0.1008 REMARK 3 S21: 0.0626 S22: -0.0389 S23: -0.1016 REMARK 3 S31: 0.1800 S32: -0.1722 S33: 0.1377 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 200 REMARK 3 ORIGIN FOR THE GROUP (A): 22.6140 6.4280 27.3950 REMARK 3 T TENSOR REMARK 3 T11: 0.1510 T22: 0.1015 REMARK 3 T33: 0.0732 T12: -0.0003 REMARK 3 T13: 0.0460 T23: 0.0018 REMARK 3 L TENSOR REMARK 3 L11: 2.8806 L22: 0.6254 REMARK 3 L33: 0.9409 L12: -1.2621 REMARK 3 L13: -0.7796 L23: 0.5231 REMARK 3 S TENSOR REMARK 3 S11: -0.3483 S12: -0.2670 S13: -0.0429 REMARK 3 S21: 0.2213 S22: 0.1358 S23: 0.0772 REMARK 3 S31: 0.3226 S32: -0.0292 S33: 0.2124 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED HYDROGENS REMARK 3 HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 4 REMARK 4 4I6Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-DEC-12. REMARK 100 THE DEPOSITION ID IS D_1000076382. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-NOV-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97935 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11502 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.09500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.26 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : 0.51900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2ID6 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.69 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS, 20% PEG 4000, PH 8.0, VAPOR REMARK 280 DIFFUSION, TEMPERATURE 310K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 93.50400 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 22.97700 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 93.50400 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 22.97700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12340 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 43100 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -116.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 HIS A 0 REMARK 465 GLY B -1 REMARK 465 HIS B 0 REMARK 465 DT C 13 REMARK 465 DG C 14 REMARK 465 DT C 15 REMARK 465 DC C 16 REMARK 465 DA C 17 REMARK 465 DG C 18 REMARK 465 DT C 19 REMARK 465 DC C 20 REMARK 465 DA C 21 REMARK 465 DG C 22 REMARK 465 DT C 23 REMARK 465 DC C 24 REMARK 465 DG D 1 REMARK 465 DA D 2 REMARK 465 DC D 3 REMARK 465 DT D 4 REMARK 465 DG D 5 REMARK 465 DA D 6 REMARK 465 DC D 7 REMARK 465 DT D 8 REMARK 465 DG D 9 REMARK 465 DA D 10 REMARK 465 DC D 11 REMARK 465 DA D 12 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 18 CG CD CE NZ REMARK 470 ARG A 23 NE CZ NH1 NH2 REMARK 470 GLU A 31 CG CD OE1 OE2 REMARK 470 LYS A 32 CE NZ REMARK 470 LYS A 37 CG CD CE NZ REMARK 470 LYS A 45 CG CD CE NZ REMARK 470 GLU A 60 CG CD OE1 OE2 REMARK 470 LYS A 64 CD CE NZ REMARK 470 ARG A 74 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 89 CD CE NZ REMARK 470 GLU A 91 CG CD OE1 OE2 REMARK 470 ILE A 104 CD1 REMARK 470 GLU A 111 CB CG CD OE1 OE2 REMARK 470 LYS A 115 CD CE NZ REMARK 470 LYS A 123 CG CD CE NZ REMARK 470 LYS A 137 NZ REMARK 470 GLU A 143 CB CG CD OE1 OE2 REMARK 470 GLU A 148 CG CD OE1 OE2 REMARK 470 ILE A 149 CD1 REMARK 470 LYS A 172 CD CE NZ REMARK 470 ARG A 178 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 192 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 200 CD CE NZ REMARK 470 LYS B 4 CG CD CE NZ REMARK 470 LYS B 18 CG CD CE NZ REMARK 470 ARG B 23 NE CZ NH1 NH2 REMARK 470 GLU B 31 CG CD OE1 OE2 REMARK 470 LYS B 32 CG CD CE NZ REMARK 470 LYS B 37 CG CD CE NZ REMARK 470 LYS B 45 CG CD CE NZ REMARK 470 GLU B 60 CG CD OE1 OE2 REMARK 470 LYS B 64 CG CD CE NZ REMARK 470 LYS B 72 CG CD CE NZ REMARK 470 GLU B 83 CG CD OE1 OE2 REMARK 470 ARG B 84 CG CD NE CZ NH1 NH2 REMARK 470 ILE B 86 CG1 CG2 CD1 REMARK 470 GLU B 87 CG CD OE1 OE2 REMARK 470 LYS B 88 CG CD CE NZ REMARK 470 LYS B 89 CD CE NZ REMARK 470 GLU B 91 CG CD OE1 OE2 REMARK 470 ILE B 104 CD1 REMARK 470 GLU B 111 CB CG CD OE1 OE2 REMARK 470 LYS B 115 CG CD CE NZ REMARK 470 GLU B 122 CG CD OE1 OE2 REMARK 470 LYS B 123 CG CD CE NZ REMARK 470 LYS B 135 CG CD CE NZ REMARK 470 LYS B 137 CG CD CE NZ REMARK 470 GLU B 143 CB CG CD OE1 OE2 REMARK 470 ILE B 149 CD1 REMARK 470 GLU B 162 CG CD OE1 OE2 REMARK 470 GLU B 163 CG CD OE1 OE2 REMARK 470 LEU B 166 CG CD1 CD2 REMARK 470 ARG B 167 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 170 CG CD OE1 NE2 REMARK 470 LYS B 172 CD CE NZ REMARK 470 GLU B 174 CG CD OE1 OE2 REMARK 470 LYS B 177 CG CD CE NZ REMARK 470 ARG B 178 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 185 CG CD OE1 OE2 REMARK 470 LYS B 188 CG CD CE NZ REMARK 470 LYS B 195 CG CD CE NZ REMARK 470 LYS B 196 CG CD CE NZ REMARK 470 LYS B 200 CD CE NZ REMARK 470 DG C 1 O5' REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DT D 13 O3' DG D 14 P -0.097 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DA C 2 O5' - P - OP2 ANGL. DEV. = 7.2 DEGREES REMARK 500 DC C 3 C1' - O4' - C4' ANGL. DEV. = -6.0 DEGREES REMARK 500 DT C 8 O5' - P - OP1 ANGL. DEV. = -8.0 DEGREES REMARK 500 DG D 18 O5' - P - OP1 ANGL. DEV. = -7.1 DEGREES REMARK 500 DG D 18 C1' - O4' - C4' ANGL. DEV. = -7.8 DEGREES REMARK 500 DG D 22 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 45 -57.41 70.47 REMARK 500 HIS A 96 47.31 -151.05 REMARK 500 GLU A 111 -48.31 -21.86 REMARK 500 LYS A 123 -72.60 -46.28 REMARK 500 VAL A 127 -76.16 -56.59 REMARK 500 ASP A 138 3.79 -57.90 REMARK 500 GLU A 143 21.54 -74.27 REMARK 500 ASP A 144 17.53 -143.77 REMARK 500 PHE A 157 -70.94 -38.41 REMARK 500 GLU A 162 -72.63 -38.32 REMARK 500 LYS A 172 42.50 -148.73 REMARK 500 LYS B 45 -52.20 66.83 REMARK 500 LYS B 72 -8.68 -59.52 REMARK 500 HIS B 96 47.94 -149.69 REMARK 500 GLU B 111 -48.54 -21.05 REMARK 500 LYS B 123 -73.97 -47.49 REMARK 500 VAL B 127 -76.00 -57.51 REMARK 500 ASP B 138 4.95 -58.91 REMARK 500 GLU B 143 22.00 -73.53 REMARK 500 ASP B 144 17.86 -144.96 REMARK 500 PHE B 157 -71.27 -38.52 REMARK 500 GLU B 162 -72.64 -38.98 REMARK 500 LYS B 172 43.69 -147.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2ID6 RELATED DB: PDB REMARK 900 RELATED ID: 2IEK RELATED DB: PDB REMARK 900 RELATED ID: MCSG-APC106687 RELATED DB: TARGETTRACK REMARK 900 RELATED ID: 4I76 RELATED DB: PDB DBREF 4I6Z A 1 200 UNP Q9X0C0 Q9X0C0_THEMA 1 200 DBREF 4I6Z B 1 200 UNP Q9X0C0 Q9X0C0_THEMA 1 200 DBREF 4I6Z C 1 24 PDB 4I6Z 4I6Z 1 24 DBREF 4I6Z D 1 24 PDB 4I6Z 4I6Z 1 24 SEQADV 4I6Z GLY A -1 UNP Q9X0C0 EXPRESSION TAG SEQADV 4I6Z HIS A 0 UNP Q9X0C0 EXPRESSION TAG SEQADV 4I6Z GLY B -1 UNP Q9X0C0 EXPRESSION TAG SEQADV 4I6Z HIS B 0 UNP Q9X0C0 EXPRESSION TAG SEQRES 1 A 202 GLY HIS MSE LEU SER LYS ARG ASP ALA ILE LEU LYS ALA SEQRES 2 A 202 ALA VAL GLU VAL PHE GLY LYS LYS GLY TYR ASP ARG ALA SEQRES 3 A 202 THR THR ASP GLU ILE ALA GLU LYS ALA GLY VAL ALA LYS SEQRES 4 A 202 GLY LEU ILE PHE HIS TYR PHE LYS ASN LYS GLU GLU LEU SEQRES 5 A 202 TYR TYR GLN ALA TYR MSE SER VAL THR GLU LYS LEU GLN SEQRES 6 A 202 LYS GLU PHE GLU ASN PHE LEU MSE LYS ASN ARG ASN ARG SEQRES 7 A 202 ASP ILE PHE ASP PHE MSE GLU ARG TRP ILE GLU LYS LYS SEQRES 8 A 202 LEU GLU TYR SER ALA SER HIS PRO GLU GLU ALA ASP PHE SEQRES 9 A 202 LEU ILE THR LEU VAL SER VAL ASP GLU GLY LEU ARG LYS SEQRES 10 A 202 ARG ILE LEU LEU ASP LEU GLU LYS SER GLN ARG VAL PHE SEQRES 11 A 202 PHE ASP PHE VAL ARG GLU LYS LEU LYS ASP LEU ASP LEU SEQRES 12 A 202 ALA GLU ASP VAL THR GLU GLU ILE ALA LEU LYS PHE LEU SEQRES 13 A 202 MSE TRP PHE PHE SER GLY PHE GLU GLU VAL TYR LEU ARG SEQRES 14 A 202 THR TYR GLN GLY LYS PRO GLU LEU LEU LYS ARG ASP MSE SEQRES 15 A 202 ASN THR LEU VAL GLU GLU VAL LYS VAL MSE LEU ARG ILE SEQRES 16 A 202 LEU LYS LYS GLY MSE THR LYS SEQRES 1 B 202 GLY HIS MSE LEU SER LYS ARG ASP ALA ILE LEU LYS ALA SEQRES 2 B 202 ALA VAL GLU VAL PHE GLY LYS LYS GLY TYR ASP ARG ALA SEQRES 3 B 202 THR THR ASP GLU ILE ALA GLU LYS ALA GLY VAL ALA LYS SEQRES 4 B 202 GLY LEU ILE PHE HIS TYR PHE LYS ASN LYS GLU GLU LEU SEQRES 5 B 202 TYR TYR GLN ALA TYR MSE SER VAL THR GLU LYS LEU GLN SEQRES 6 B 202 LYS GLU PHE GLU ASN PHE LEU MSE LYS ASN ARG ASN ARG SEQRES 7 B 202 ASP ILE PHE ASP PHE MSE GLU ARG TRP ILE GLU LYS LYS SEQRES 8 B 202 LEU GLU TYR SER ALA SER HIS PRO GLU GLU ALA ASP PHE SEQRES 9 B 202 LEU ILE THR LEU VAL SER VAL ASP GLU GLY LEU ARG LYS SEQRES 10 B 202 ARG ILE LEU LEU ASP LEU GLU LYS SER GLN ARG VAL PHE SEQRES 11 B 202 PHE ASP PHE VAL ARG GLU LYS LEU LYS ASP LEU ASP LEU SEQRES 12 B 202 ALA GLU ASP VAL THR GLU GLU ILE ALA LEU LYS PHE LEU SEQRES 13 B 202 MSE TRP PHE PHE SER GLY PHE GLU GLU VAL TYR LEU ARG SEQRES 14 B 202 THR TYR GLN GLY LYS PRO GLU LEU LEU LYS ARG ASP MSE SEQRES 15 B 202 ASN THR LEU VAL GLU GLU VAL LYS VAL MSE LEU ARG ILE SEQRES 16 B 202 LEU LYS LYS GLY MSE THR LYS SEQRES 1 C 24 DG DA DC DT DG DA DC DT DG DA DC DA DT SEQRES 2 C 24 DG DT DC DA DG DT DC DA DG DT DC SEQRES 1 D 24 DG DA DC DT DG DA DC DT DG DA DC DA DT SEQRES 2 D 24 DG DT DC DA DG DT DC DA DG DT DC MODRES 4I6Z MSE A 1 MET SELENOMETHIONINE MODRES 4I6Z MSE A 56 MET SELENOMETHIONINE MODRES 4I6Z MSE A 71 MET SELENOMETHIONINE MODRES 4I6Z MSE A 82 MET SELENOMETHIONINE MODRES 4I6Z MSE A 155 MET SELENOMETHIONINE MODRES 4I6Z MSE A 180 MET SELENOMETHIONINE MODRES 4I6Z MSE A 190 MET SELENOMETHIONINE MODRES 4I6Z MSE A 198 MET SELENOMETHIONINE MODRES 4I6Z MSE B 1 MET SELENOMETHIONINE MODRES 4I6Z MSE B 56 MET SELENOMETHIONINE MODRES 4I6Z MSE B 71 MET SELENOMETHIONINE MODRES 4I6Z MSE B 82 MET SELENOMETHIONINE MODRES 4I6Z MSE B 155 MET SELENOMETHIONINE MODRES 4I6Z MSE B 180 MET SELENOMETHIONINE MODRES 4I6Z MSE B 190 MET SELENOMETHIONINE MODRES 4I6Z MSE B 198 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 56 8 HET MSE A 71 8 HET MSE A 82 8 HET MSE A 155 8 HET MSE A 180 8 HET MSE A 190 8 HET MSE A 198 8 HET MSE B 1 8 HET MSE B 56 8 HET MSE B 71 8 HET MSE B 82 8 HET MSE B 155 8 HET MSE B 180 8 HET MSE B 190 8 HET MSE B 198 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 16(C5 H11 N O2 SE) FORMUL 5 HOH *6(H2 O) HELIX 1 1 SER A 3 GLY A 20 1 18 HELIX 2 2 THR A 25 GLY A 34 1 10 HELIX 3 3 ALA A 36 PHE A 44 1 9 HELIX 4 4 ASN A 46 ARG A 74 1 29 HELIX 5 5 ASP A 77 HIS A 96 1 20 HELIX 6 6 HIS A 96 ILE A 104 1 9 HELIX 7 7 THR A 105 VAL A 109 5 5 HELIX 8 8 ASP A 110 ASP A 138 1 29 HELIX 9 9 THR A 146 TYR A 169 1 24 HELIX 10 10 LYS A 172 THR A 199 1 28 HELIX 11 11 SER B 3 GLY B 20 1 18 HELIX 12 12 THR B 25 GLY B 34 1 10 HELIX 13 13 ALA B 36 PHE B 44 1 9 HELIX 14 14 ASN B 46 ARG B 74 1 29 HELIX 15 15 ASP B 77 HIS B 96 1 20 HELIX 16 16 HIS B 96 ILE B 104 1 9 HELIX 17 17 THR B 105 VAL B 109 5 5 HELIX 18 18 ASP B 110 ASP B 138 1 29 HELIX 19 19 THR B 146 TYR B 169 1 24 HELIX 20 20 LYS B 172 THR B 199 1 28 LINK C MSE A 1 N LEU A 2 1555 1555 1.32 LINK C TYR A 55 N MSE A 56 1555 1555 1.32 LINK C MSE A 56 N SER A 57 1555 1555 1.33 LINK C LEU A 70 N MSE A 71 1555 1555 1.32 LINK C MSE A 71 N LYS A 72 1555 1555 1.32 LINK C PHE A 81 N MSE A 82 1555 1555 1.32 LINK C MSE A 82 N GLU A 83 1555 1555 1.32 LINK C LEU A 154 N MSE A 155 1555 1555 1.32 LINK C MSE A 155 N TRP A 156 1555 1555 1.32 LINK C ASP A 179 N MSE A 180 1555 1555 1.33 LINK C MSE A 180 N ASN A 181 1555 1555 1.32 LINK C VAL A 189 N MSE A 190 1555 1555 1.34 LINK C MSE A 190 N LEU A 191 1555 1555 1.33 LINK C GLY A 197 N MSE A 198 1555 1555 1.33 LINK C MSE A 198 N THR A 199 1555 1555 1.32 LINK C MSE B 1 N LEU B 2 1555 1555 1.33 LINK C TYR B 55 N MSE B 56 1555 1555 1.33 LINK C MSE B 56 N SER B 57 1555 1555 1.33 LINK C LEU B 70 N MSE B 71 1555 1555 1.33 LINK C MSE B 71 N LYS B 72 1555 1555 1.32 LINK C PHE B 81 N MSE B 82 1555 1555 1.33 LINK C MSE B 82 N GLU B 83 1555 1555 1.34 LINK C LEU B 154 N MSE B 155 1555 1555 1.32 LINK C MSE B 155 N TRP B 156 1555 1555 1.32 LINK C ASP B 179 N MSE B 180 1555 1555 1.33 LINK C MSE B 180 N ASN B 181 1555 1555 1.33 LINK C VAL B 189 N MSE B 190 1555 1555 1.32 LINK C MSE B 190 N LEU B 191 1555 1555 1.33 LINK C GLY B 197 N MSE B 198 1555 1555 1.33 LINK C MSE B 198 N THR B 199 1555 1555 1.33 CRYST1 187.008 45.954 82.510 90.00 105.60 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005347 0.000000 0.001493 0.00000 SCALE2 0.000000 0.021761 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012583 0.00000 HETATM 1 N MSE A 1 28.498 28.738 -14.825 1.00124.21 N ANISOU 1 N MSE A 1 14149 16552 16492 766 205 1539 N HETATM 2 CA MSE A 1 27.046 28.618 -14.478 1.00119.93 C ANISOU 2 CA MSE A 1 13646 16101 15818 769 174 1389 C HETATM 3 C MSE A 1 26.613 27.186 -14.505 1.00102.42 C ANISOU 3 C MSE A 1 11466 14009 13440 726 187 1241 C HETATM 4 O MSE A 1 26.982 26.427 -15.398 1.00115.38 O ANISOU 4 O MSE A 1 13086 15753 14999 754 243 1267 O HETATM 5 CB MSE A 1 26.149 29.393 -15.455 1.00138.00 C ANISOU 5 CB MSE A 1 15888 18520 18024 883 211 1456 C HETATM 6 CG MSE A 1 24.654 29.304 -15.108 1.00159.31 C ANISOU 6 CG MSE A 1 18617 21325 20589 890 178 1308 C HETATM 7 SE MSE A 1 24.325 29.928 -13.255 1.00200.42 SE ANISOU 7 SE MSE A 1 23894 26336 25919 810 70 1200 SE HETATM 8 CE MSE A 1 22.864 28.803 -12.549 1.00177.85 C ANISOU 8 CE MSE A 1 21083 23623 22867 752 41 966 C