data_4I7Y # _entry.id 4I7Y # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.329 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4I7Y NDB NA2157 RCSB RCSB076417 WWPDB D_1000076417 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 4DIH . unspecified PDB 4DII . unspecified PDB 3QLP . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4I7Y _pdbx_database_status.recvd_initial_deposition_date 2012-12-01 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Pica, A.' 1 'Russo Krauss, I.' 2 'Merlino, A.' 3 'Mazzarella, L.' 4 'Sica, F.' 5 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Duplex-quadruplex motifs in a peculiar structural organization cooperatively contribute to thrombin binding of a DNA aptamer.' 'Acta Crystallogr.,Sect.D' 69 2403 2411 2013 ABCRE6 DK 0907-4449 0766 ? 24311581 10.1107/S0907444913022269 1 'Thrombin-aptamer recognition: a revealed ambiguity.' 'Nucleic Acids Res.' 39 7858 7867 2011 NARHAD UK 0305-1048 0389 ? 21715374 10.1093/nar/gkr522 2 ;High-resolution structures of two complexes between thrombin and thrombin-binding aptamer shed light on the role of cations in the aptamer inhibitory activity. ; 'Nucleic Acids Res.' 40 8119 8128 2012 NARHAD UK 0305-1048 0389 ? 22669903 10.1093/nar/gks512 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Russo Krauss, I.' 1 ? primary 'Pica, A.' 2 ? primary 'Merlino, A.' 3 ? primary 'Mazzarella, L.' 4 ? primary 'Sica, F.' 5 ? 1 'Russo Krauss, I.' 6 ? 1 'Merlino, A.' 7 ? 1 'Giancola, C.' 8 ? 1 'Randazzo, A.' 9 ? 1 'Mazzarella, L.' 10 ? 1 'Sica, F.' 11 ? 2 'Russo Krauss, I.' 12 ? 2 'Merlino, A.' 13 ? 2 'Randazzo, A.' 14 ? 2 'Novellino, E.' 15 ? 2 'Mazzarella, L.' 16 ? 2 'Sica, F.' 17 ? # _cell.entry_id 4I7Y _cell.length_a 48.144 _cell.length_b 81.904 _cell.length_c 53.720 _cell.angle_alpha 90.00 _cell.angle_beta 99.66 _cell.angle_gamma 90.00 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4I7Y _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat Prothrombin 29780.219 1 3.4.21.5 ? 'HEAVY CHAIN (UNP Residues 364-622)' ? 2 polymer nat Prothrombin 4096.534 1 3.4.21.5 ? 'LIGHT CHAIN (UNP Residues 328-363)' ? 3 polymer syn 'DNA (27-MER)' 8485.429 1 ? ? ? HD22-27mer 4 non-polymer syn 'D-phenylalanyl-N-[(2S,3S)-6-{[amino(iminio)methyl]amino}-1-chloro-2-hydroxyhexan-3-yl]-L-prolinamide' 453.986 1 ? ? ? ? 5 non-polymer syn 'SODIUM ION' 22.990 1 ? ? ? ? 6 non-polymer man 2-acetamido-2-deoxy-beta-D-glucopyranose 221.208 1 ? ? ? ? 7 water nat water 18.015 98 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 'Coagulation factor II, Activation peptide fragment 1, Activation peptide fragment 2, Thrombin heavy chain' 2 'Coagulation factor II, Activation peptide fragment 1, Activation peptide fragment 2, Thrombin light chain' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVL QVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY THVFRLKKWIQKVIDQFGE ; ;IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVL QVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY THVFRLKKWIQKVIDQFGE ; H ? 2 'polypeptide(L)' no no TFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGR TFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGR L ? 3 polydeoxyribonucleotide no no ;(DG)(DT)(DC)(DC)(DG)(DT)(DG)(DG)(DT)(DA)(DG)(DG)(DG)(DC)(DA)(DG)(DG)(DT)(DT)(DG) (DG)(DG)(DG)(DT)(DG)(DA)(DC) ; GTCCGTGGTAGGGCAGGTTGGGGTGAC D ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ILE n 1 2 VAL n 1 3 GLU n 1 4 GLY n 1 5 SER n 1 6 ASP n 1 7 ALA n 1 8 GLU n 1 9 ILE n 1 10 GLY n 1 11 MET n 1 12 SER n 1 13 PRO n 1 14 TRP n 1 15 GLN n 1 16 VAL n 1 17 MET n 1 18 LEU n 1 19 PHE n 1 20 ARG n 1 21 LYS n 1 22 SER n 1 23 PRO n 1 24 GLN n 1 25 GLU n 1 26 LEU n 1 27 LEU n 1 28 CYS n 1 29 GLY n 1 30 ALA n 1 31 SER n 1 32 LEU n 1 33 ILE n 1 34 SER n 1 35 ASP n 1 36 ARG n 1 37 TRP n 1 38 VAL n 1 39 LEU n 1 40 THR n 1 41 ALA n 1 42 ALA n 1 43 HIS n 1 44 CYS n 1 45 LEU n 1 46 LEU n 1 47 TYR n 1 48 PRO n 1 49 PRO n 1 50 TRP n 1 51 ASP n 1 52 LYS n 1 53 ASN n 1 54 PHE n 1 55 THR n 1 56 GLU n 1 57 ASN n 1 58 ASP n 1 59 LEU n 1 60 LEU n 1 61 VAL n 1 62 ARG n 1 63 ILE n 1 64 GLY n 1 65 LYS n 1 66 HIS n 1 67 SER n 1 68 ARG n 1 69 THR n 1 70 ARG n 1 71 TYR n 1 72 GLU n 1 73 ARG n 1 74 ASN n 1 75 ILE n 1 76 GLU n 1 77 LYS n 1 78 ILE n 1 79 SER n 1 80 MET n 1 81 LEU n 1 82 GLU n 1 83 LYS n 1 84 ILE n 1 85 TYR n 1 86 ILE n 1 87 HIS n 1 88 PRO n 1 89 ARG n 1 90 TYR n 1 91 ASN n 1 92 TRP n 1 93 ARG n 1 94 GLU n 1 95 ASN n 1 96 LEU n 1 97 ASP n 1 98 ARG n 1 99 ASP n 1 100 ILE n 1 101 ALA n 1 102 LEU n 1 103 MET n 1 104 LYS n 1 105 LEU n 1 106 LYS n 1 107 LYS n 1 108 PRO n 1 109 VAL n 1 110 ALA n 1 111 PHE n 1 112 SER n 1 113 ASP n 1 114 TYR n 1 115 ILE n 1 116 HIS n 1 117 PRO n 1 118 VAL n 1 119 CYS n 1 120 LEU n 1 121 PRO n 1 122 ASP n 1 123 ARG n 1 124 GLU n 1 125 THR n 1 126 ALA n 1 127 ALA n 1 128 SER n 1 129 LEU n 1 130 LEU n 1 131 GLN n 1 132 ALA n 1 133 GLY n 1 134 TYR n 1 135 LYS n 1 136 GLY n 1 137 ARG n 1 138 VAL n 1 139 THR n 1 140 GLY n 1 141 TRP n 1 142 GLY n 1 143 ASN n 1 144 LEU n 1 145 LYS n 1 146 GLU n 1 147 THR n 1 148 TRP n 1 149 THR n 1 150 ALA n 1 151 ASN n 1 152 VAL n 1 153 GLY n 1 154 LYS n 1 155 GLY n 1 156 GLN n 1 157 PRO n 1 158 SER n 1 159 VAL n 1 160 LEU n 1 161 GLN n 1 162 VAL n 1 163 VAL n 1 164 ASN n 1 165 LEU n 1 166 PRO n 1 167 ILE n 1 168 VAL n 1 169 GLU n 1 170 ARG n 1 171 PRO n 1 172 VAL n 1 173 CYS n 1 174 LYS n 1 175 ASP n 1 176 SER n 1 177 THR n 1 178 ARG n 1 179 ILE n 1 180 ARG n 1 181 ILE n 1 182 THR n 1 183 ASP n 1 184 ASN n 1 185 MET n 1 186 PHE n 1 187 CYS n 1 188 ALA n 1 189 GLY n 1 190 TYR n 1 191 LYS n 1 192 PRO n 1 193 ASP n 1 194 GLU n 1 195 GLY n 1 196 LYS n 1 197 ARG n 1 198 GLY n 1 199 ASP n 1 200 ALA n 1 201 CYS n 1 202 GLU n 1 203 GLY n 1 204 ASP n 1 205 SER n 1 206 GLY n 1 207 GLY n 1 208 PRO n 1 209 PHE n 1 210 VAL n 1 211 MET n 1 212 LYS n 1 213 SER n 1 214 PRO n 1 215 PHE n 1 216 ASN n 1 217 ASN n 1 218 ARG n 1 219 TRP n 1 220 TYR n 1 221 GLN n 1 222 MET n 1 223 GLY n 1 224 ILE n 1 225 VAL n 1 226 SER n 1 227 TRP n 1 228 GLY n 1 229 GLU n 1 230 GLY n 1 231 CYS n 1 232 ASP n 1 233 ARG n 1 234 ASP n 1 235 GLY n 1 236 LYS n 1 237 TYR n 1 238 GLY n 1 239 PHE n 1 240 TYR n 1 241 THR n 1 242 HIS n 1 243 VAL n 1 244 PHE n 1 245 ARG n 1 246 LEU n 1 247 LYS n 1 248 LYS n 1 249 TRP n 1 250 ILE n 1 251 GLN n 1 252 LYS n 1 253 VAL n 1 254 ILE n 1 255 ASP n 1 256 GLN n 1 257 PHE n 1 258 GLY n 1 259 GLU n 2 1 THR n 2 2 PHE n 2 3 GLY n 2 4 SER n 2 5 GLY n 2 6 GLU n 2 7 ALA n 2 8 ASP n 2 9 CYS n 2 10 GLY n 2 11 LEU n 2 12 ARG n 2 13 PRO n 2 14 LEU n 2 15 PHE n 2 16 GLU n 2 17 LYS n 2 18 LYS n 2 19 SER n 2 20 LEU n 2 21 GLU n 2 22 ASP n 2 23 LYS n 2 24 THR n 2 25 GLU n 2 26 ARG n 2 27 GLU n 2 28 LEU n 2 29 LEU n 2 30 GLU n 2 31 SER n 2 32 TYR n 2 33 ILE n 2 34 ASP n 2 35 GLY n 2 36 ARG n 3 1 DG n 3 2 DT n 3 3 DC n 3 4 DC n 3 5 DG n 3 6 DT n 3 7 DG n 3 8 DG n 3 9 DT n 3 10 DA n 3 11 DG n 3 12 DG n 3 13 DG n 3 14 DC n 3 15 DA n 3 16 DG n 3 17 DG n 3 18 DT n 3 19 DT n 3 20 DG n 3 21 DG n 3 22 DG n 3 23 DG n 3 24 DT n 3 25 DG n 3 26 DA n 3 27 DC n # loop_ _entity_src_nat.entity_id _entity_src_nat.pdbx_src_id _entity_src_nat.pdbx_alt_source_flag _entity_src_nat.pdbx_beg_seq_num _entity_src_nat.pdbx_end_seq_num _entity_src_nat.common_name _entity_src_nat.pdbx_organism_scientific _entity_src_nat.pdbx_ncbi_taxonomy_id _entity_src_nat.genus _entity_src_nat.species _entity_src_nat.strain _entity_src_nat.tissue _entity_src_nat.tissue_fraction _entity_src_nat.pdbx_secretion _entity_src_nat.pdbx_fragment _entity_src_nat.pdbx_variant _entity_src_nat.pdbx_cell_line _entity_src_nat.pdbx_atcc _entity_src_nat.pdbx_cellular_location _entity_src_nat.pdbx_organ _entity_src_nat.pdbx_organelle _entity_src_nat.pdbx_cell _entity_src_nat.pdbx_plasmid_name _entity_src_nat.pdbx_plasmid_details _entity_src_nat.details 1 1 sample ? ? human 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample ? ? human 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _pdbx_entity_src_syn.entity_id 3 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'SYNTHETIC DNA' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP THRB_HUMAN P00734 1 ;IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVL QVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY THVFRLKKWIQKVIDQFGE ; 364 ? 2 UNP THRB_HUMAN P00734 2 TFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGR 328 ? 3 PDB 4I7Y 4I7Y 3 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4I7Y H 1 ? 259 ? P00734 364 ? 622 ? 16 247 2 2 4I7Y L 1 ? 36 ? P00734 328 ? 363 ? -5 17 3 3 4I7Y D 1 ? 27 ? 4I7Y 1 ? 27 ? 1 27 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 0G6 peptide-like . 'D-phenylalanyl-N-[(2S,3S)-6-{[amino(iminio)methyl]amino}-1-chloro-2-hydroxyhexan-3-yl]-L-prolinamide' PPACK 'C21 H34 Cl N6 O3 1' 453.986 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ? 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4I7Y _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.46 _exptl_crystal.density_percent_sol 50.10 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_details '14% PEG 3350, 0.2 M sodium citrate, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MAR CCD 165 mm' _diffrn_detector.pdbx_collection_date 2011-03-21 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator GRAPHITE _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.2651 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ELETTRA BEAMLINE 5.2R' _diffrn_source.pdbx_synchrotron_site ELETTRA _diffrn_source.pdbx_synchrotron_beamline 5.2R _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.2651 # _reflns.entry_id 4I7Y _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_high 2.40 _reflns.d_resolution_low 50.0 _reflns.number_obs 16132 _reflns.number_all 16132 _reflns.percent_possible_obs 99.8 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 4.8 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_low _reflns_shell.d_res_high _reflns_shell.percent_possible_all _reflns_shell.Rmerge_I_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_unique_obs _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2.49 2.40 98.9 ? ? ? ? ? ? ? ? ? ? 1 1 2.59 2.49 99.7 ? ? ? ? ? ? ? ? ? ? 2 1 2.70 2.59 99.9 ? ? ? ? ? ? ? ? ? ? 3 1 2.85 2.70 99.9 ? ? ? ? ? ? ? ? ? ? 4 1 3.02 2.85 100.0 ? ? ? ? ? ? ? ? ? ? 5 1 3.26 3.02 99.9 ? ? ? ? ? ? ? ? ? ? 6 1 3.58 3.26 99.9 ? ? ? ? ? ? ? ? ? ? 7 1 4.10 3.58 99.9 ? ? ? ? ? ? ? ? ? ? 8 1 5.17 4.10 99.9 ? ? ? ? ? ? ? ? ? ? 9 1 50.0 5.17 99.6 ? ? ? ? ? ? ? ? ? ? 10 1 # _refine.entry_id 4I7Y _refine.ls_number_reflns_obs 16132 _refine.ls_number_reflns_all 16132 _refine.pdbx_ls_sigma_I . _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_high 2.40 _refine.ls_d_res_low 50.0 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.184 _refine.ls_R_factor_all 0.184 _refine.ls_R_factor_R_work 0.181 _refine.ls_R_factor_R_free 0.249 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free 765 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2244 _refine_hist.pdbx_number_atoms_nucleic_acid 564 _refine_hist.pdbx_number_atoms_ligand 45 _refine_hist.number_atoms_solvent 98 _refine_hist.number_atoms_total 2951 _refine_hist.d_res_high 2.40 _refine_hist.d_res_low 50.0 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 0.011 ? ? ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 1.687 ? ? ? ? 'X-RAY DIFFRACTION' r_chiral_restr 0.118 ? ? ? ? 'X-RAY DIFFRACTION' r_gen_planes_refined 0.020 ? ? ? ? 'X-RAY DIFFRACTION' # _struct.entry_id 4I7Y _struct.title 'Crystal Structure of Human Alpha Thrombin in Complex with a 27-mer Aptamer Bound to Exosite II' _struct.pdbx_descriptor 'Prothrombin (E.C.3.4.21.5)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4I7Y _struct_keywords.pdbx_keywords 'HYDROLASE/HYDROLASE INHIBITOR/DNA' _struct_keywords.text ;Protein-DNA complex, serine protease, blood coagulation, aptamer, hydrolase-hydrolase inhibitor-DNA complex, serine protease fold, DNA aptamer, blood, G-quadruplex, duplex-quadruplex junction ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 6 ? G N N 7 ? H N N 7 ? I N N 7 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ALA A 41 ? LEU A 45 ? ALA H 55 LEU H 59 1 ? 5 HELX_P HELX_P2 2 PRO A 48 B ASP A 51 E PRO H 60 ASP H 60 5 ? 4 HELX_P HELX_P3 3 THR A 55 I ASN A 57 ? THR H 60 ASN H 62 5 ? 3 HELX_P HELX_P4 4 ASP A 122 ? LEU A 130 ? ASP H 125 LEU H 130 1 ? 9 HELX_P HELX_P5 5 GLU A 169 ? SER A 176 ? GLU H 164 SER H 171 1 ? 8 HELX_P HELX_P6 6 LEU A 246 ? GLY A 258 ? LEU H 234 GLY H 246 1 ? 13 HELX_P HELX_P7 7 PHE B 15 ? SER B 19 ? PHE L 7 SER L 11 5 ? 5 HELX_P HELX_P8 8 THR B 24 B ILE B 33 K THR L 14 ILE L 14 1 ? 10 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 28 SG ? ? ? 1_555 A CYS 44 SG ? ? H CYS 42 H CYS 58 1_555 ? ? ? ? ? ? ? 2.065 ? ? disulf2 disulf ? ? A CYS 119 SG ? ? ? 1_555 B CYS 9 SG ? ? H CYS 122 L CYS 1 1_555 ? ? ? ? ? ? ? 2.040 ? ? disulf3 disulf ? ? A CYS 173 SG ? ? ? 1_555 A CYS 187 SG ? ? H CYS 168 H CYS 182 1_555 ? ? ? ? ? ? ? 2.033 ? ? disulf4 disulf ? ? A CYS 201 SG ? ? ? 1_555 A CYS 231 SG ? ? H CYS 191 H CYS 220 1_555 ? ? ? ? ? ? ? 2.050 ? ? covale1 covale one ? A HIS 43 NE2 ? ? ? 1_555 D 0G6 . C3 ? ? H HIS 57 H 0G6 302 1_555 ? ? ? ? ? ? ? 1.499 ? ? covale2 covale one ? A ASN 53 ND2 ? G ? 1_555 F NAG . C1 ? ? H ASN 60 L NAG 301 1_555 ? ? ? ? ? ? ? 1.456 ? N-Glycosylation covale3 covale none ? A SER 205 OG ? ? ? 1_555 D 0G6 . C2 ? ? H SER 195 H 0G6 302 1_555 ? ? ? ? ? ? ? 1.415 ? ? metalc1 metalc ? ? A ARG 233 O ? ? ? 1_555 E NA . NA ? ? H ARG 221 H NA 303 1_555 ? ? ? ? ? ? ? 2.427 ? ? metalc2 metalc ? ? A LYS 236 O ? ? ? 1_555 E NA . NA ? ? H LYS 224 H NA 303 1_555 ? ? ? ? ? ? ? 2.273 ? ? metalc3 metalc ? ? E NA . NA ? ? ? 1_555 G HOH . O ? ? H NA 303 H HOH 411 1_555 ? ? ? ? ? ? ? 2.349 ? ? metalc4 metalc ? ? E NA . NA ? ? ? 1_555 G HOH . O ? ? H NA 303 H HOH 416 1_555 ? ? ? ? ? ? ? 2.197 ? ? metalc5 metalc ? ? E NA . NA ? ? ? 1_555 G HOH . O ? ? H NA 303 H HOH 429 1_555 ? ? ? ? ? ? ? 2.498 ? ? metalc6 metalc ? ? E NA . NA ? ? ? 1_555 G HOH . O ? ? H NA 303 H HOH 453 1_555 ? ? ? ? ? ? ? 2.255 ? ? hydrog1 hydrog ? ? C DG 1 N1 ? ? ? 1_555 C DC 27 N3 ? ? D DG 1 D DC 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? C DG 1 N2 ? ? ? 1_555 C DC 27 O2 ? ? D DG 1 D DC 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? C DG 1 O6 ? ? ? 1_555 C DC 27 N4 ? ? D DG 1 D DC 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? C DT 2 N3 ? ? ? 1_555 C DA 26 N1 ? ? D DT 2 D DA 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? C DT 2 O4 ? ? ? 1_555 C DA 26 N6 ? ? D DT 2 D DA 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? C DC 3 N3 ? ? ? 1_555 C DG 25 N1 ? ? D DC 3 D DG 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? C DC 3 N4 ? ? ? 1_555 C DG 25 O6 ? ? D DC 3 D DG 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? C DC 3 O2 ? ? ? 1_555 C DG 25 N2 ? ? D DC 3 D DG 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? C DC 4 N3 ? ? ? 1_555 C DG 23 N1 ? ? D DC 4 D DG 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? C DC 4 N4 ? ? ? 1_555 C DG 23 O6 ? ? D DC 4 D DG 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? C DC 4 O2 ? ? ? 1_555 C DG 23 N2 ? ? D DC 4 D DG 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? C DG 5 N2 ? ? ? 1_555 C DG 7 O6 ? ? D DG 5 D DG 7 1_555 ? ? ? ? ? ? 'DG-DG MISPAIR' ? ? ? hydrog13 hydrog ? ? C DG 5 N1 ? ? ? 1_555 C DG 16 N7 ? ? D DG 5 D DG 16 1_555 ? ? ? ? ? ? TYPE_7_PAIR ? ? ? hydrog14 hydrog ? ? C DG 5 N2 ? ? ? 1_555 C DG 16 O6 ? ? D DG 5 D DG 16 1_555 ? ? ? ? ? ? TYPE_7_PAIR ? ? ? hydrog15 hydrog ? ? C DT 6 N3 ? ? ? 1_555 C DA 15 N7 ? ? D DT 6 D DA 15 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog16 hydrog ? ? C DT 6 O2 ? ? ? 1_555 C DA 15 N6 ? ? D DT 6 D DA 15 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog17 hydrog ? ? C DG 8 N7 ? ? ? 1_555 C DG 11 N2 ? ? D DG 8 D DG 11 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog18 hydrog ? ? C DG 8 O6 ? ? ? 1_555 C DG 11 N1 ? ? D DG 8 D DG 11 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog19 hydrog ? ? C DG 8 N1 ? ? ? 1_555 C DG 20 O6 ? ? D DG 8 D DG 20 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog20 hydrog ? ? C DG 8 N2 ? ? ? 1_555 C DG 20 N7 ? ? D DG 8 D DG 20 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog21 hydrog ? ? C DA 10 N1 ? ? ? 1_555 C DT 19 N3 ? ? D DA 10 D DT 19 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog22 hydrog ? ? C DA 10 N6 ? ? ? 1_555 C DT 19 O2 ? ? D DA 10 D DT 19 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog23 hydrog ? ? C DG 11 N7 ? ? ? 1_555 C DG 17 N2 ? ? D DG 11 D DG 17 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog24 hydrog ? ? C DG 11 O6 ? ? ? 1_555 C DG 17 N1 ? ? D DG 11 D DG 17 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog25 hydrog ? ? C DG 17 N7 ? ? ? 1_555 C DG 20 N2 ? ? D DG 17 D DG 20 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog26 hydrog ? ? C DG 17 O6 ? ? ? 1_555 C DG 20 N1 ? ? D DG 17 D DG 20 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? metalc ? ? hydrog ? ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id SER _struct_mon_prot_cis.label_seq_id 22 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code A _struct_mon_prot_cis.auth_comp_id SER _struct_mon_prot_cis.auth_seq_id 36 _struct_mon_prot_cis.auth_asym_id H _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 23 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 37 _struct_mon_prot_cis.pdbx_auth_asym_id_2 H _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -5.44 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 7 ? B ? 7 ? C ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel B 6 7 ? anti-parallel C 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 SER A 5 ? ASP A 6 ? SER H 20 ASP H 21 A 2 GLN A 161 ? PRO A 166 ? GLN H 156 PRO H 161 A 3 LYS A 135 ? GLY A 140 ? LYS H 135 GLY H 140 A 4 PRO A 208 ? LYS A 212 ? PRO H 198 LYS H 202 A 5 TRP A 219 ? TRP A 227 ? TRP H 207 TRP H 215 A 6 GLY A 238 ? HIS A 242 ? GLY H 226 HIS H 230 A 7 MET A 185 ? ALA A 188 ? MET H 180 ALA H 183 B 1 LYS A 77 ? SER A 79 ? LYS H 81 SER H 83 B 2 LEU A 59 ? ILE A 63 ? LEU H 64 ILE H 68 B 3 GLN A 15 ? ARG A 20 ? GLN H 30 ARG H 35 B 4 GLU A 25 ? LEU A 32 ? GLU H 39 LEU H 46 B 5 TRP A 37 ? THR A 40 ? TRP H 51 THR H 54 B 6 ALA A 101 ? LEU A 105 ? ALA H 104 LEU H 108 B 7 LEU A 81 ? ILE A 86 ? LEU H 85 ILE H 90 C 1 LEU A 46 ? TYR A 47 A LEU H 60 TYR H 60 C 2 LYS A 52 F ASN A 53 G LYS H 60 ASN H 60 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N SER A 5 ? N SER H 20 O VAL A 162 ? O VAL H 157 A 2 3 O LEU A 165 ? O LEU H 160 N GLY A 136 ? N GLY H 136 A 3 4 N ARG A 137 ? N ARG H 137 O VAL A 210 ? O VAL H 200 A 4 5 N MET A 211 ? N MET H 201 O TYR A 220 ? O TYR H 208 A 5 6 N TRP A 227 ? N TRP H 215 O PHE A 239 ? O PHE H 227 A 6 7 O TYR A 240 ? O TYR H 228 N PHE A 186 ? N PHE H 181 B 1 2 O LYS A 77 ? O LYS H 81 N ILE A 63 ? N ILE H 68 B 2 3 O LEU A 60 ? O LEU H 65 N PHE A 19 ? N PHE H 34 B 3 4 N ARG A 20 ? N ARG H 35 O GLU A 25 ? O GLU H 39 B 4 5 N SER A 31 ? N SER H 45 O LEU A 39 ? O LEU H 53 B 5 6 N VAL A 38 ? N VAL H 52 O MET A 103 ? O MET H 106 B 6 7 O LYS A 104 ? O LYS H 107 N GLU A 82 ? N GLU H 86 C 1 2 N TYR A 47 A N TYR H 60 O LYS A 52 F O LYS H 60 # _database_PDB_matrix.entry_id 4I7Y _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4I7Y _atom_sites.fract_transf_matrix[1][1] 0.020771 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.003536 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012209 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.018883 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N NA O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ILE 1 16 16 ILE ILE H . n A 1 2 VAL 2 17 17 VAL VAL H . n A 1 3 GLU 3 18 18 GLU GLU H . n A 1 4 GLY 4 19 19 GLY GLY H . n A 1 5 SER 5 20 20 SER SER H . n A 1 6 ASP 6 21 21 ASP ASP H . n A 1 7 ALA 7 22 22 ALA ALA H . n A 1 8 GLU 8 23 23 GLU GLU H . n A 1 9 ILE 9 24 24 ILE ILE H . n A 1 10 GLY 10 25 25 GLY GLY H . n A 1 11 MET 11 26 26 MET MET H . n A 1 12 SER 12 27 27 SER SER H . n A 1 13 PRO 13 28 28 PRO PRO H . n A 1 14 TRP 14 29 29 TRP TRP H . n A 1 15 GLN 15 30 30 GLN GLN H . n A 1 16 VAL 16 31 31 VAL VAL H . n A 1 17 MET 17 32 32 MET MET H . n A 1 18 LEU 18 33 33 LEU LEU H . n A 1 19 PHE 19 34 34 PHE PHE H . n A 1 20 ARG 20 35 35 ARG ARG H . n A 1 21 LYS 21 36 36 LYS LYS H . n A 1 22 SER 22 36 36 SER SER H A n A 1 23 PRO 23 37 37 PRO PRO H . n A 1 24 GLN 24 38 38 GLN GLN H . n A 1 25 GLU 25 39 39 GLU GLU H . n A 1 26 LEU 26 40 40 LEU LEU H . n A 1 27 LEU 27 41 41 LEU LEU H . n A 1 28 CYS 28 42 42 CYS CYS H . n A 1 29 GLY 29 43 43 GLY GLY H . n A 1 30 ALA 30 44 44 ALA ALA H . n A 1 31 SER 31 45 45 SER SER H . n A 1 32 LEU 32 46 46 LEU LEU H . n A 1 33 ILE 33 47 47 ILE ILE H . n A 1 34 SER 34 48 48 SER SER H . n A 1 35 ASP 35 49 49 ASP ASP H . n A 1 36 ARG 36 50 50 ARG ARG H . n A 1 37 TRP 37 51 51 TRP TRP H . n A 1 38 VAL 38 52 52 VAL VAL H . n A 1 39 LEU 39 53 53 LEU LEU H . n A 1 40 THR 40 54 54 THR THR H . n A 1 41 ALA 41 55 55 ALA ALA H . n A 1 42 ALA 42 56 56 ALA ALA H . n A 1 43 HIS 43 57 57 HIS HIS H . n A 1 44 CYS 44 58 58 CYS CYS H . n A 1 45 LEU 45 59 59 LEU LEU H . n A 1 46 LEU 46 60 60 LEU LEU H . n A 1 47 TYR 47 60 60 TYR TYR H A n A 1 48 PRO 48 60 60 PRO PRO H B n A 1 49 PRO 49 60 60 PRO PRO H C n A 1 50 TRP 50 60 60 TRP TRP H D n A 1 51 ASP 51 60 60 ASP ASP H E n A 1 52 LYS 52 60 60 LYS LYS H F n A 1 53 ASN 53 60 60 ASN ASN H G n A 1 54 PHE 54 60 60 PHE PHE H H n A 1 55 THR 55 60 60 THR THR H I n A 1 56 GLU 56 61 61 GLU GLU H . n A 1 57 ASN 57 62 62 ASN ASN H . n A 1 58 ASP 58 63 63 ASP ASP H . n A 1 59 LEU 59 64 64 LEU LEU H . n A 1 60 LEU 60 65 65 LEU LEU H . n A 1 61 VAL 61 66 66 VAL VAL H . n A 1 62 ARG 62 67 67 ARG ARG H . n A 1 63 ILE 63 68 68 ILE ILE H . n A 1 64 GLY 64 69 69 GLY GLY H . n A 1 65 LYS 65 70 70 LYS LYS H . n A 1 66 HIS 66 71 71 HIS HIS H . n A 1 67 SER 67 72 72 SER SER H . n A 1 68 ARG 68 73 73 ARG ARG H . n A 1 69 THR 69 74 74 THR THR H . n A 1 70 ARG 70 75 75 ARG ARG H . n A 1 71 TYR 71 76 76 TYR TYR H . n A 1 72 GLU 72 77 77 GLU GLU H . n A 1 73 ARG 73 77 77 ARG ARG H A n A 1 74 ASN 74 78 78 ASN ASN H . n A 1 75 ILE 75 79 79 ILE ILE H . n A 1 76 GLU 76 80 80 GLU GLU H . n A 1 77 LYS 77 81 81 LYS LYS H . n A 1 78 ILE 78 82 82 ILE ILE H . n A 1 79 SER 79 83 83 SER SER H . n A 1 80 MET 80 84 84 MET MET H . n A 1 81 LEU 81 85 85 LEU LEU H . n A 1 82 GLU 82 86 86 GLU GLU H . n A 1 83 LYS 83 87 87 LYS LYS H . n A 1 84 ILE 84 88 88 ILE ILE H . n A 1 85 TYR 85 89 89 TYR TYR H . n A 1 86 ILE 86 90 90 ILE ILE H . n A 1 87 HIS 87 91 91 HIS HIS H . n A 1 88 PRO 88 92 92 PRO PRO H . n A 1 89 ARG 89 93 93 ARG ARG H . n A 1 90 TYR 90 94 94 TYR TYR H . n A 1 91 ASN 91 95 95 ASN ASN H . n A 1 92 TRP 92 96 96 TRP TRP H . n A 1 93 ARG 93 97 97 ARG ARG H . n A 1 94 GLU 94 97 97 GLU GLU H A n A 1 95 ASN 95 98 98 ASN ASN H . n A 1 96 LEU 96 99 99 LEU LEU H . n A 1 97 ASP 97 100 100 ASP ASP H . n A 1 98 ARG 98 101 101 ARG ARG H . n A 1 99 ASP 99 102 102 ASP ASP H . n A 1 100 ILE 100 103 103 ILE ILE H . n A 1 101 ALA 101 104 104 ALA ALA H . n A 1 102 LEU 102 105 105 LEU LEU H . n A 1 103 MET 103 106 106 MET MET H . n A 1 104 LYS 104 107 107 LYS LYS H . n A 1 105 LEU 105 108 108 LEU LEU H . n A 1 106 LYS 106 109 109 LYS LYS H . n A 1 107 LYS 107 110 110 LYS LYS H . n A 1 108 PRO 108 111 111 PRO PRO H . n A 1 109 VAL 109 112 112 VAL VAL H . n A 1 110 ALA 110 113 113 ALA ALA H . n A 1 111 PHE 111 114 114 PHE PHE H . n A 1 112 SER 112 115 115 SER SER H . n A 1 113 ASP 113 116 116 ASP ASP H . n A 1 114 TYR 114 117 117 TYR TYR H . n A 1 115 ILE 115 118 118 ILE ILE H . n A 1 116 HIS 116 119 119 HIS HIS H . n A 1 117 PRO 117 120 120 PRO PRO H . n A 1 118 VAL 118 121 121 VAL VAL H . n A 1 119 CYS 119 122 122 CYS CYS H . n A 1 120 LEU 120 123 123 LEU LEU H . n A 1 121 PRO 121 124 124 PRO PRO H . n A 1 122 ASP 122 125 125 ASP ASP H . n A 1 123 ARG 123 126 126 ARG ARG H . n A 1 124 GLU 124 127 127 GLU GLU H . n A 1 125 THR 125 128 128 THR THR H . n A 1 126 ALA 126 129 129 ALA ALA H . n A 1 127 ALA 127 129 129 ALA ALA H A n A 1 128 SER 128 129 129 SER SER H B n A 1 129 LEU 129 129 129 LEU LEU H C n A 1 130 LEU 130 130 130 LEU LEU H . n A 1 131 GLN 131 131 131 GLN GLN H . n A 1 132 ALA 132 132 132 ALA ALA H . n A 1 133 GLY 133 133 133 GLY GLY H . n A 1 134 TYR 134 134 134 TYR TYR H . n A 1 135 LYS 135 135 135 LYS LYS H . n A 1 136 GLY 136 136 136 GLY GLY H . n A 1 137 ARG 137 137 137 ARG ARG H . n A 1 138 VAL 138 138 138 VAL VAL H . n A 1 139 THR 139 139 139 THR THR H . n A 1 140 GLY 140 140 140 GLY GLY H . n A 1 141 TRP 141 141 141 TRP TRP H . n A 1 142 GLY 142 142 142 GLY GLY H . n A 1 143 ASN 143 143 143 ASN ASN H . n A 1 144 LEU 144 144 144 LEU LEU H . n A 1 145 LYS 145 145 145 LYS LYS H . n A 1 146 GLU 146 146 146 GLU GLU H . n A 1 147 THR 147 146 ? ? ? H A n A 1 148 TRP 148 146 ? ? ? H B n A 1 149 THR 149 146 ? ? ? H C n A 1 150 ALA 150 146 ? ? ? H D n A 1 151 ASN 151 146 ? ? ? H E n A 1 152 VAL 152 146 ? ? ? H F n A 1 153 GLY 153 146 ? ? ? H G n A 1 154 LYS 154 146 ? ? ? H H n A 1 155 GLY 155 150 150 GLY GLY H . n A 1 156 GLN 156 151 151 GLN GLN H . n A 1 157 PRO 157 152 152 PRO PRO H . n A 1 158 SER 158 153 153 SER SER H . n A 1 159 VAL 159 154 154 VAL VAL H . n A 1 160 LEU 160 155 155 LEU LEU H . n A 1 161 GLN 161 156 156 GLN GLN H . n A 1 162 VAL 162 157 157 VAL VAL H . n A 1 163 VAL 163 158 158 VAL VAL H . n A 1 164 ASN 164 159 159 ASN ASN H . n A 1 165 LEU 165 160 160 LEU LEU H . n A 1 166 PRO 166 161 161 PRO PRO H . n A 1 167 ILE 167 162 162 ILE ILE H . n A 1 168 VAL 168 163 163 VAL VAL H . n A 1 169 GLU 169 164 164 GLU GLU H . n A 1 170 ARG 170 165 165 ARG ARG H . n A 1 171 PRO 171 166 166 PRO PRO H . n A 1 172 VAL 172 167 167 VAL VAL H . n A 1 173 CYS 173 168 168 CYS CYS H . n A 1 174 LYS 174 169 169 LYS LYS H . n A 1 175 ASP 175 170 170 ASP ASP H . n A 1 176 SER 176 171 171 SER SER H . n A 1 177 THR 177 172 172 THR THR H . n A 1 178 ARG 178 173 173 ARG ARG H . n A 1 179 ILE 179 174 174 ILE ILE H . n A 1 180 ARG 180 175 175 ARG ARG H . n A 1 181 ILE 181 176 176 ILE ILE H . n A 1 182 THR 182 177 177 THR THR H . n A 1 183 ASP 183 178 178 ASP ASP H . n A 1 184 ASN 184 179 179 ASN ASN H . n A 1 185 MET 185 180 180 MET MET H . n A 1 186 PHE 186 181 181 PHE PHE H . n A 1 187 CYS 187 182 182 CYS CYS H . n A 1 188 ALA 188 183 183 ALA ALA H . n A 1 189 GLY 189 184 184 GLY GLY H . n A 1 190 TYR 190 184 184 TYR TYR H A n A 1 191 LYS 191 185 185 LYS LYS H . n A 1 192 PRO 192 186 186 PRO PRO H . n A 1 193 ASP 193 186 186 ASP ASP H A n A 1 194 GLU 194 186 186 GLU GLU H B n A 1 195 GLY 195 186 186 GLY GLY H C n A 1 196 LYS 196 186 186 LYS LYS H D n A 1 197 ARG 197 187 187 ARG ARG H . n A 1 198 GLY 198 188 188 GLY GLY H . n A 1 199 ASP 199 189 189 ASP ASP H . n A 1 200 ALA 200 190 190 ALA ALA H . n A 1 201 CYS 201 191 191 CYS CYS H . n A 1 202 GLU 202 192 192 GLU GLU H . n A 1 203 GLY 203 193 193 GLY GLY H . n A 1 204 ASP 204 194 194 ASP ASP H . n A 1 205 SER 205 195 195 SER SER H . n A 1 206 GLY 206 196 196 GLY GLY H . n A 1 207 GLY 207 197 197 GLY GLY H . n A 1 208 PRO 208 198 198 PRO PRO H . n A 1 209 PHE 209 199 199 PHE PHE H . n A 1 210 VAL 210 200 200 VAL VAL H . n A 1 211 MET 211 201 201 MET MET H . n A 1 212 LYS 212 202 202 LYS LYS H . n A 1 213 SER 213 203 203 SER SER H . n A 1 214 PRO 214 204 204 PRO PRO H . n A 1 215 PHE 215 204 204 PHE PHE H A n A 1 216 ASN 216 204 204 ASN ASN H B n A 1 217 ASN 217 205 205 ASN ASN H . n A 1 218 ARG 218 206 206 ARG ARG H . n A 1 219 TRP 219 207 207 TRP TRP H . n A 1 220 TYR 220 208 208 TYR TYR H . n A 1 221 GLN 221 209 209 GLN GLN H . n A 1 222 MET 222 210 210 MET MET H . n A 1 223 GLY 223 211 211 GLY GLY H . n A 1 224 ILE 224 212 212 ILE ILE H . n A 1 225 VAL 225 213 213 VAL VAL H . n A 1 226 SER 226 214 214 SER SER H . n A 1 227 TRP 227 215 215 TRP TRP H . n A 1 228 GLY 228 216 216 GLY GLY H . n A 1 229 GLU 229 217 217 GLU GLU H . n A 1 230 GLY 230 219 219 GLY GLY H . n A 1 231 CYS 231 220 220 CYS CYS H . n A 1 232 ASP 232 221 221 ASP ASP H A n A 1 233 ARG 233 221 221 ARG ARG H . n A 1 234 ASP 234 222 222 ASP ASP H . n A 1 235 GLY 235 223 223 GLY GLY H . n A 1 236 LYS 236 224 224 LYS LYS H . n A 1 237 TYR 237 225 225 TYR TYR H . n A 1 238 GLY 238 226 226 GLY GLY H . n A 1 239 PHE 239 227 227 PHE PHE H . n A 1 240 TYR 240 228 228 TYR TYR H . n A 1 241 THR 241 229 229 THR THR H . n A 1 242 HIS 242 230 230 HIS HIS H . n A 1 243 VAL 243 231 231 VAL VAL H . n A 1 244 PHE 244 232 232 PHE PHE H . n A 1 245 ARG 245 233 233 ARG ARG H . n A 1 246 LEU 246 234 234 LEU LEU H . n A 1 247 LYS 247 235 235 LYS LYS H . n A 1 248 LYS 248 236 236 LYS LYS H . n A 1 249 TRP 249 237 237 TRP TRP H . n A 1 250 ILE 250 238 238 ILE ILE H . n A 1 251 GLN 251 239 239 GLN GLN H . n A 1 252 LYS 252 240 240 LYS LYS H . n A 1 253 VAL 253 241 241 VAL VAL H . n A 1 254 ILE 254 242 242 ILE ILE H . n A 1 255 ASP 255 243 243 ASP ASP H . n A 1 256 GLN 256 244 244 GLN GLN H . n A 1 257 PHE 257 245 245 PHE PHE H . n A 1 258 GLY 258 246 246 GLY GLY H . n A 1 259 GLU 259 247 ? ? ? H . n B 2 1 THR 1 -5 ? ? ? L . n B 2 2 PHE 2 -4 ? ? ? L . n B 2 3 GLY 3 -3 ? ? ? L . n B 2 4 SER 4 -2 ? ? ? L . n B 2 5 GLY 5 -1 ? ? ? L . n B 2 6 GLU 6 0 ? ? ? L . n B 2 7 ALA 7 1 1 ALA ALA L B n B 2 8 ASP 8 1 1 ASP ASP L A n B 2 9 CYS 9 1 1 CYS CYS L . n B 2 10 GLY 10 2 2 GLY GLY L . n B 2 11 LEU 11 3 3 LEU LEU L . n B 2 12 ARG 12 4 4 ARG ARG L . n B 2 13 PRO 13 5 5 PRO PRO L . n B 2 14 LEU 14 6 6 LEU LEU L . n B 2 15 PHE 15 7 7 PHE PHE L . n B 2 16 GLU 16 8 8 GLU GLU L . n B 2 17 LYS 17 9 9 LYS LYS L . n B 2 18 LYS 18 10 10 LYS LYS L . n B 2 19 SER 19 11 11 SER SER L . n B 2 20 LEU 20 12 12 LEU LEU L . n B 2 21 GLU 21 13 13 GLU GLU L . n B 2 22 ASP 22 14 14 ASP ASP L . n B 2 23 LYS 23 14 14 LYS LYS L A n B 2 24 THR 24 14 14 THR THR L B n B 2 25 GLU 25 14 14 GLU GLU L C n B 2 26 ARG 26 14 14 ARG ARG L D n B 2 27 GLU 27 14 14 GLU GLU L E n B 2 28 LEU 28 14 14 LEU LEU L F n B 2 29 LEU 29 14 14 LEU LEU L G n B 2 30 GLU 30 14 14 GLU GLU L H n B 2 31 SER 31 14 14 SER SER L I n B 2 32 TYR 32 14 14 TYR TYR L J n B 2 33 ILE 33 14 14 ILE ILE L K n B 2 34 ASP 34 15 ? ? ? L . n B 2 35 GLY 35 16 ? ? ? L . n B 2 36 ARG 36 17 ? ? ? L . n C 3 1 DG 1 1 1 DG DG D . n C 3 2 DT 2 2 2 DT DT D . n C 3 3 DC 3 3 3 DC DC D . n C 3 4 DC 4 4 4 DC DC D . n C 3 5 DG 5 5 5 DG DG D . n C 3 6 DT 6 6 6 DT DT D . n C 3 7 DG 7 7 7 DG DG D . n C 3 8 DG 8 8 8 DG DG D . n C 3 9 DT 9 9 9 DT DT D . n C 3 10 DA 10 10 10 DA DA D . n C 3 11 DG 11 11 11 DG DG D . n C 3 12 DG 12 12 12 DG DG D . n C 3 13 DG 13 13 13 DG DG D . n C 3 14 DC 14 14 14 DC DC D . n C 3 15 DA 15 15 15 DA DA D . n C 3 16 DG 16 16 16 DG DG D . n C 3 17 DG 17 17 17 DG DG D . n C 3 18 DT 18 18 18 DT DT D . n C 3 19 DT 19 19 19 DT DT D . n C 3 20 DG 20 20 20 DG DG D . n C 3 21 DG 21 21 21 DG DG D . n C 3 22 DG 22 22 22 DG DG D . n C 3 23 DG 23 23 23 DG DG D . n C 3 24 DT 24 24 24 DT DT D . n C 3 25 DG 25 25 25 DG DG D . n C 3 26 DA 26 26 26 DA DA D . n C 3 27 DC 27 27 27 DC DC D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 0G6 1 302 301 0G6 0G6 H . E 5 NA 1 303 303 NA NA H . F 6 NAG 1 301 302 NAG NAG L . G 7 HOH 1 401 1 HOH HOH H . G 7 HOH 2 402 2 HOH HOH H . G 7 HOH 3 403 3 HOH HOH H . G 7 HOH 4 404 4 HOH HOH H . G 7 HOH 5 405 5 HOH HOH H . G 7 HOH 6 406 6 HOH HOH H . G 7 HOH 7 407 7 HOH HOH H . G 7 HOH 8 408 8 HOH HOH H . G 7 HOH 9 409 9 HOH HOH H . G 7 HOH 10 410 10 HOH HOH H . G 7 HOH 11 411 11 HOH HOH H . G 7 HOH 12 412 13 HOH HOH H . G 7 HOH 13 413 14 HOH HOH H . G 7 HOH 14 414 15 HOH HOH H . G 7 HOH 15 415 16 HOH HOH H . G 7 HOH 16 416 17 HOH HOH H . G 7 HOH 17 417 18 HOH HOH H . G 7 HOH 18 418 19 HOH HOH H . G 7 HOH 19 419 20 HOH HOH H . G 7 HOH 20 420 23 HOH HOH H . G 7 HOH 21 421 24 HOH HOH H . G 7 HOH 22 422 25 HOH HOH H . G 7 HOH 23 423 26 HOH HOH H . G 7 HOH 24 424 28 HOH HOH H . G 7 HOH 25 425 29 HOH HOH H . G 7 HOH 26 426 30 HOH HOH H . G 7 HOH 27 427 31 HOH HOH H . G 7 HOH 28 428 32 HOH HOH H . G 7 HOH 29 429 33 HOH HOH H . G 7 HOH 30 430 34 HOH HOH H . G 7 HOH 31 431 35 HOH HOH H . G 7 HOH 32 432 36 HOH HOH H . G 7 HOH 33 433 37 HOH HOH H . G 7 HOH 34 434 38 HOH HOH H . G 7 HOH 35 435 40 HOH HOH H . G 7 HOH 36 436 41 HOH HOH H . G 7 HOH 37 437 42 HOH HOH H . G 7 HOH 38 438 43 HOH HOH H . G 7 HOH 39 439 44 HOH HOH H . G 7 HOH 40 440 47 HOH HOH H . G 7 HOH 41 441 50 HOH HOH H . G 7 HOH 42 442 51 HOH HOH H . G 7 HOH 43 443 52 HOH HOH H . G 7 HOH 44 444 53 HOH HOH H . G 7 HOH 45 445 54 HOH HOH H . G 7 HOH 46 446 55 HOH HOH H . G 7 HOH 47 447 56 HOH HOH H . G 7 HOH 48 448 57 HOH HOH H . G 7 HOH 49 449 58 HOH HOH H . G 7 HOH 50 450 59 HOH HOH H . G 7 HOH 51 451 61 HOH HOH H . G 7 HOH 52 452 62 HOH HOH H . G 7 HOH 53 453 63 HOH HOH H . G 7 HOH 54 454 65 HOH HOH H . G 7 HOH 55 455 67 HOH HOH H . G 7 HOH 56 456 69 HOH HOH H . G 7 HOH 57 457 70 HOH HOH H . G 7 HOH 58 458 71 HOH HOH H . G 7 HOH 59 459 73 HOH HOH H . G 7 HOH 60 460 74 HOH HOH H . G 7 HOH 61 461 75 HOH HOH H . G 7 HOH 62 462 77 HOH HOH H . G 7 HOH 63 463 79 HOH HOH H . G 7 HOH 64 464 80 HOH HOH H . G 7 HOH 65 465 82 HOH HOH H . G 7 HOH 66 466 83 HOH HOH H . G 7 HOH 67 467 84 HOH HOH H . G 7 HOH 68 468 85 HOH HOH H . G 7 HOH 69 469 87 HOH HOH H . G 7 HOH 70 470 90 HOH HOH H . G 7 HOH 71 471 93 HOH HOH H . G 7 HOH 72 472 94 HOH HOH H . G 7 HOH 73 473 95 HOH HOH H . G 7 HOH 74 474 98 HOH HOH H . G 7 HOH 75 475 99 HOH HOH H . G 7 HOH 76 476 100 HOH HOH H . G 7 HOH 77 477 101 HOH HOH H . H 7 HOH 1 101 21 HOH HOH L . H 7 HOH 2 102 27 HOH HOH L . H 7 HOH 3 103 48 HOH HOH L . H 7 HOH 4 104 60 HOH HOH L . H 7 HOH 5 105 66 HOH HOH L . H 7 HOH 6 106 81 HOH HOH L . H 7 HOH 7 107 86 HOH HOH L . H 7 HOH 8 108 91 HOH HOH L . I 7 HOH 1 101 12 HOH HOH D . I 7 HOH 2 102 22 HOH HOH D . I 7 HOH 3 103 39 HOH HOH D . I 7 HOH 4 104 45 HOH HOH D . I 7 HOH 5 105 46 HOH HOH D . I 7 HOH 6 106 49 HOH HOH D . I 7 HOH 7 107 64 HOH HOH D . I 7 HOH 8 108 68 HOH HOH D . I 7 HOH 9 109 72 HOH HOH D . I 7 HOH 10 110 76 HOH HOH D . I 7 HOH 11 111 78 HOH HOH D . I 7 HOH 12 112 92 HOH HOH D . I 7 HOH 13 113 97 HOH HOH D . # _pdbx_molecule_features.prd_id PRD_000020 _pdbx_molecule_features.name D-Phe-Pro-Arg-CH2Cl _pdbx_molecule_features.type Peptide-like _pdbx_molecule_features.class Inhibitor _pdbx_molecule_features.details ? # _pdbx_molecule.instance_id 1 _pdbx_molecule.prd_id PRD_000020 _pdbx_molecule.asym_id D # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id ASN _pdbx_struct_mod_residue.label_seq_id 53 _pdbx_struct_mod_residue.auth_asym_id H _pdbx_struct_mod_residue.auth_comp_id ASN _pdbx_struct_mod_residue.auth_seq_id 60 _pdbx_struct_mod_residue.PDB_ins_code G _pdbx_struct_mod_residue.parent_comp_id ASN _pdbx_struct_mod_residue.details 'GLYCOSYLATION SITE' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4620 ? 1 MORE -23 ? 1 'SSA (A^2)' 15480 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? A ARG 233 ? H ARG 221 ? 1_555 NA ? E NA . ? H NA 303 ? 1_555 O ? A LYS 236 ? H LYS 224 ? 1_555 87.8 ? 2 O ? A ARG 233 ? H ARG 221 ? 1_555 NA ? E NA . ? H NA 303 ? 1_555 O ? G HOH . ? H HOH 411 ? 1_555 161.6 ? 3 O ? A LYS 236 ? H LYS 224 ? 1_555 NA ? E NA . ? H NA 303 ? 1_555 O ? G HOH . ? H HOH 411 ? 1_555 83.6 ? 4 O ? A ARG 233 ? H ARG 221 ? 1_555 NA ? E NA . ? H NA 303 ? 1_555 O ? G HOH . ? H HOH 416 ? 1_555 95.8 ? 5 O ? A LYS 236 ? H LYS 224 ? 1_555 NA ? E NA . ? H NA 303 ? 1_555 O ? G HOH . ? H HOH 416 ? 1_555 82.5 ? 6 O ? G HOH . ? H HOH 411 ? 1_555 NA ? E NA . ? H NA 303 ? 1_555 O ? G HOH . ? H HOH 416 ? 1_555 99.1 ? 7 O ? A ARG 233 ? H ARG 221 ? 1_555 NA ? E NA . ? H NA 303 ? 1_555 O ? G HOH . ? H HOH 429 ? 1_555 76.6 ? 8 O ? A LYS 236 ? H LYS 224 ? 1_555 NA ? E NA . ? H NA 303 ? 1_555 O ? G HOH . ? H HOH 429 ? 1_555 105.7 ? 9 O ? G HOH . ? H HOH 411 ? 1_555 NA ? E NA . ? H NA 303 ? 1_555 O ? G HOH . ? H HOH 429 ? 1_555 90.1 ? 10 O ? G HOH . ? H HOH 416 ? 1_555 NA ? E NA . ? H NA 303 ? 1_555 O ? G HOH . ? H HOH 429 ? 1_555 168.4 ? 11 O ? A ARG 233 ? H ARG 221 ? 1_555 NA ? E NA . ? H NA 303 ? 1_555 O ? G HOH . ? H HOH 453 ? 1_555 93.9 ? 12 O ? A LYS 236 ? H LYS 224 ? 1_555 NA ? E NA . ? H NA 303 ? 1_555 O ? G HOH . ? H HOH 453 ? 1_555 170.8 ? 13 O ? G HOH . ? H HOH 411 ? 1_555 NA ? E NA . ? H NA 303 ? 1_555 O ? G HOH . ? H HOH 453 ? 1_555 97.1 ? 14 O ? G HOH . ? H HOH 416 ? 1_555 NA ? E NA . ? H NA 303 ? 1_555 O ? G HOH . ? H HOH 453 ? 1_555 88.4 ? 15 O ? G HOH . ? H HOH 429 ? 1_555 NA ? E NA . ? H NA 303 ? 1_555 O ? G HOH . ? H HOH 453 ? 1_555 83.4 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-10-16 2 'Structure model' 1 1 2013-12-11 3 'Structure model' 1 2 2014-01-01 4 'Structure model' 1 3 2020-07-29 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 4 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Derived calculations' 5 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp 2 4 'Structure model' entity 3 4 'Structure model' pdbx_chem_comp_identifier 4 4 'Structure model' pdbx_entity_nonpoly 5 4 'Structure model' pdbx_struct_conn_angle 6 4 'Structure model' struct_conn 7 4 'Structure model' struct_site 8 4 'Structure model' struct_site_gen # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_chem_comp.name' 2 4 'Structure model' '_chem_comp.type' 3 4 'Structure model' '_entity.pdbx_description' 4 4 'Structure model' '_pdbx_entity_nonpoly.name' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.value' 14 4 'Structure model' '_struct_conn.conn_type_id' 15 4 'Structure model' '_struct_conn.id' 16 4 'Structure model' '_struct_conn.pdbx_dist_value' 17 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 18 4 'Structure model' '_struct_conn.pdbx_ptnr1_PDB_ins_code' 19 4 'Structure model' '_struct_conn.pdbx_role' 20 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 21 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 22 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 23 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 24 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 25 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 26 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 27 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 28 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 29 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 30 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal DENZO 'data reduction' . ? 1 PHASER phasing . ? 2 REFMAC refinement . ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER H 48 ? ? -170.79 -172.31 2 1 HIS H 71 ? ? -124.50 -54.59 3 1 ASN H 78 ? ? 55.32 19.96 4 1 ILE H 79 ? ? -124.19 -58.16 5 1 ASN H 98 ? ? -151.78 21.59 6 1 GLU H 186 B ? -68.28 5.14 7 1 LYS H 186 D ? -45.60 151.87 8 1 ASN H 205 ? ? -88.21 38.54 9 1 SER H 214 ? ? -124.23 -61.49 10 1 ARG H 233 ? ? -39.39 -34.11 11 1 PHE L 7 ? ? -129.93 -85.11 12 1 SER L 11 ? ? 34.85 50.22 # _pdbx_validate_peptide_omega.id 1 _pdbx_validate_peptide_omega.PDB_model_num 1 _pdbx_validate_peptide_omega.auth_comp_id_1 ARG _pdbx_validate_peptide_omega.auth_asym_id_1 H _pdbx_validate_peptide_omega.auth_seq_id_1 75 _pdbx_validate_peptide_omega.PDB_ins_code_1 ? _pdbx_validate_peptide_omega.label_alt_id_1 ? _pdbx_validate_peptide_omega.auth_comp_id_2 TYR _pdbx_validate_peptide_omega.auth_asym_id_2 H _pdbx_validate_peptide_omega.auth_seq_id_2 76 _pdbx_validate_peptide_omega.PDB_ins_code_2 ? _pdbx_validate_peptide_omega.label_alt_id_2 ? _pdbx_validate_peptide_omega.omega 148.58 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 H THR 146 A A THR 147 2 1 Y 1 H TRP 146 B A TRP 148 3 1 Y 1 H THR 146 C A THR 149 4 1 Y 1 H ALA 146 D A ALA 150 5 1 Y 1 H ASN 146 E A ASN 151 6 1 Y 1 H VAL 146 F A VAL 152 7 1 Y 1 H GLY 146 G A GLY 153 8 1 Y 1 H LYS 146 H A LYS 154 9 1 Y 1 H GLU 247 ? A GLU 259 10 1 Y 1 L THR -5 ? B THR 1 11 1 Y 1 L PHE -4 ? B PHE 2 12 1 Y 1 L GLY -3 ? B GLY 3 13 1 Y 1 L SER -2 ? B SER 4 14 1 Y 1 L GLY -1 ? B GLY 5 15 1 Y 1 L GLU 0 ? B GLU 6 16 1 Y 1 L ASP 15 ? B ASP 34 17 1 Y 1 L GLY 16 ? B GLY 35 18 1 Y 1 L ARG 17 ? B ARG 36 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 4I7Y 'double helix' 4I7Y 'hairpin loop' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 C DG 1 1_555 C DC 27 1_555 -0.190 -0.131 0.243 -7.396 -8.652 0.638 1 D_DG1:DC27_D D 1 ? D 27 ? 19 1 1 C DT 2 1_555 C DA 26 1_555 0.396 -0.215 0.019 -12.564 -7.605 5.025 2 D_DT2:DA26_D D 2 ? D 26 ? 20 1 1 C DC 3 1_555 C DG 25 1_555 0.321 -0.402 0.055 -2.999 -6.597 2.863 3 D_DC3:DG25_D D 3 ? D 25 ? 19 1 1 C DC 4 1_555 C DG 23 1_555 -0.092 0.036 -0.240 10.003 0.719 0.759 4 D_DC4:DG23_D D 4 ? D 23 ? 19 1 1 C DA 10 1_555 C DT 19 1_555 0.054 1.172 -0.337 -15.490 -28.850 171.426 5 D_DA10:DT19_D D 10 ? D 19 ? 21 2 1 C DG 11 1_555 C DG 17 1_555 -1.458 -3.025 0.294 -25.591 -3.004 87.327 6 D_DG11:DG17_D D 11 ? D 17 ? 6 3 1 C DG 5 1_555 C DG 16 1_555 5.261 0.055 -0.171 -11.334 -6.418 -118.899 7 D_DG5:DG16_D D 5 ? D 16 ? 7 4 1 C DT 6 1_555 C DA 15 1_555 3.482 -0.998 -0.150 -9.159 -7.038 -94.804 8 D_DT6:DA15_D D 6 ? D 15 ? 24 4 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 C DG 1 1_555 C DC 27 1_555 C DT 2 1_555 C DA 26 1_555 -0.369 -1.185 3.393 4.060 2.255 36.784 -2.172 1.135 3.260 3.556 -6.402 37.066 1 DD_DG1DT2:DA26DC27_DD D 1 ? D 27 ? D 2 ? D 26 ? 1 C DT 2 1_555 C DA 26 1_555 C DC 3 1_555 C DG 25 1_555 0.234 -0.632 3.099 1.767 6.131 35.104 -1.862 -0.143 2.958 10.061 -2.899 35.661 2 DD_DT2DC3:DG25DA26_DD D 2 ? D 26 ? D 3 ? D 25 ? 1 C DC 3 1_555 C DG 25 1_555 C DC 4 1_555 C DG 23 1_555 -1.355 -0.755 3.055 2.801 2.660 18.076 -3.638 5.575 2.677 8.343 -8.786 18.481 3 DD_DC3DC4:DG23DG25_DD D 3 ? D 25 ? D 4 ? D 23 ? 1 C DA 10 1_555 C DT 19 1_555 C DG 11 1_555 C DG 17 1_555 0.915 -2.861 -0.427 -159.454 -73.095 53.560 -1.470 -0.375 0.129 -37.073 80.873 175.902 4 DD_DA10DG11:DG17DT19_DD D 10 ? D 19 ? D 11 ? D 17 ? 1 C DG 11 1_555 C DG 17 1_555 C DG 5 1_555 C DG 16 1_555 2.402 2.905 -2.089 -167.982 25.011 172.929 1.462 -1.136 -2.205 12.507 84.001 179.374 5 DD_DG11DG5:DG16DG17_DD D 11 ? D 17 ? D 5 ? D 16 ? 1 C DG 5 1_555 C DG 16 1_555 C DT 6 1_555 C DA 15 1_555 -0.132 0.860 3.114 -7.226 -2.421 19.147 3.411 -2.632 2.843 -6.934 20.693 20.595 6 DD_DG5DT6:DA15DG16_DD D 5 ? D 16 ? D 6 ? D 15 ? # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 'D-phenylalanyl-N-[(2S,3S)-6-{[amino(iminio)methyl]amino}-1-chloro-2-hydroxyhexan-3-yl]-L-prolinamide' 0G6 5 'SODIUM ION' NA 6 2-acetamido-2-deoxy-beta-D-glucopyranose NAG 7 water HOH #