HEADER HYDROLASE 02-DEC-12 4I82 TITLE CRYSTAL STRUCTURE OF HYPOTHETICAL THIOESTERASE PROTEIN SP_1851 FROM TITLE 2 STREPTOCOCCUS PNEUMONIAE TIGR4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: HYPOTHETICAL THIOESTERASE PROTEIN SP1851; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 170187; SOURCE 4 STRAIN: TIGR4; SOURCE 5 GENE: SP_1851; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21DE3PLYSE; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG21 KEYWDS PAAI/YDII-LIKE, HOT DOG FOLD, THIOESTERASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.B.KHANDOKAR,J.K.FORWOOD REVDAT 3 08-NOV-23 4I82 1 REMARK SEQADV REVDAT 2 15-NOV-17 4I82 1 REMARK REVDAT 1 16-JAN-13 4I82 0 JRNL AUTH Y.B.KHANDOKAR,J.K.FORWOOD JRNL TITL CRYSTAL STRUCTURE OF HYPOTHETICAL THIOESTERASE PROTEIN JRNL TITL 2 SP_1851 FROM STREPTOCOCCUS PNEUMONIAE TIGR4 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.77 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 93.5 REMARK 3 NUMBER OF REFLECTIONS : 7735 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.241 REMARK 3 R VALUE (WORKING SET) : 0.238 REMARK 3 FREE R VALUE : 0.286 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.600 REMARK 3 FREE R VALUE TEST SET COUNT : 374 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.56 REMARK 3 REFLECTION IN BIN (WORKING SET) : 514 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 84.15 REMARK 3 BIN R VALUE (WORKING SET) : 0.2650 REMARK 3 BIN FREE R VALUE SET COUNT : 17 REMARK 3 BIN FREE R VALUE : 0.4020 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1852 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.83 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.16000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : -0.16000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.174 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.359 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.283 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.567 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.911 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.877 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1832 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1725 ; 0.006 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2479 ; 1.585 ; 1.936 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3944 ; 0.910 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 240 ; 7.619 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 76 ;41.546 ;25.658 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 300 ;21.116 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 3 ;23.342 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 299 ; 0.095 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2113 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 420 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4I82 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 06-DEC-12. REMARK 100 THE DEPOSITION ID IS D_1000076421. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-OCT-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : SILICON DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8159 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.490 REMARK 200 RESOLUTION RANGE LOW (A) : 35.220 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.49 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.62 REMARK 200 COMPLETENESS FOR SHELL (%) : 83.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 3LBB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.97 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200MM AMMONIUM TARTRATE DIBASIC, 20% REMARK 280 PEG 3350, 100MM TRIS PH7.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.81000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 43.81000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 23.13000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 59.23500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 23.13000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 59.23500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 43.81000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 23.13000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 59.23500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 43.81000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 23.13000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 59.23500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8010 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19370 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 46.26000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 43.81000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 ASP A 3 REMARK 465 PHE A 4 REMARK 465 ARG A 126 REMARK 465 SER A 127 REMARK 465 GLU A 128 REMARK 465 GLU A 129 REMARK 465 ARG A 130 REMARK 465 ARG A 131 REMARK 465 VAL A 132 REMARK 465 ARG A 133 REMARK 465 ILE A 134 REMARK 465 SER B -2 REMARK 465 ASN B -1 REMARK 465 ALA B 0 REMARK 465 MET B 1 REMARK 465 LYS B 2 REMARK 465 ASP B 3 REMARK 465 PHE B 4 REMARK 465 ARG B 126 REMARK 465 SER B 127 REMARK 465 GLU B 128 REMARK 465 GLU B 129 REMARK 465 ARG B 130 REMARK 465 ARG B 131 REMARK 465 VAL B 132 REMARK 465 ARG B 133 REMARK 465 ILE B 134 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ASP A 7 CG OD1 OD2 REMARK 480 GLU A 16 CD OE1 OE2 REMARK 480 LYS A 19 CG CD CE NZ REMARK 480 ARG A 21 CD NE CZ NH1 NH2 REMARK 480 LYS A 30 CD CE NZ REMARK 480 LEU A 62 CB CG CD1 CD2 REMARK 480 LYS A 77 CG CD CE NZ REMARK 480 GLU A 90 OE1 REMARK 480 ARG A 111 NE CZ NH1 NH2 REMARK 480 GLN A 125 CG CD OE1 NE2 REMARK 480 HIS B 5 O CB CG REMARK 480 ARG B 21 NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 13 OG SER A 34 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASP A 7 CB ASP A 7 CG -0.404 REMARK 500 GLU A 16 CG GLU A 16 CD -0.146 REMARK 500 LYS A 19 CB LYS A 19 CG -0.332 REMARK 500 ARG A 21 CG ARG A 21 CD 0.453 REMARK 500 LEU A 62 CA LEU A 62 CB -0.146 REMARK 500 LYS A 77 CB LYS A 77 CG -0.235 REMARK 500 GLN A 125 CB GLN A 125 CG 0.167 REMARK 500 ARG B 21 CD ARG B 21 NE -0.288 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 19 CA - CB - CG ANGL. DEV. = 18.0 DEGREES REMARK 500 ARG A 21 CB - CG - CD ANGL. DEV. = -16.7 DEGREES REMARK 500 LEU A 62 CA - CB - CG ANGL. DEV. = 14.0 DEGREES REMARK 500 GLU A 90 OE1 - CD - OE2 ANGL. DEV. = -21.9 DEGREES REMARK 500 GLU A 90 CG - CD - OE1 ANGL. DEV. = 17.7 DEGREES REMARK 500 ARG A 111 CD - NE - CZ ANGL. DEV. = 15.1 DEGREES REMARK 500 ARG B 21 CD - NE - CZ ANGL. DEV. = 9.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 12 40.69 74.55 REMARK 500 ASP A 22 65.56 30.12 REMARK 500 THR A 29 148.19 -171.28 REMARK 500 VAL A 32 -162.48 -129.13 REMARK 500 ASP A 82 1.94 81.60 REMARK 500 CYS A 114 130.69 -173.15 REMARK 500 MET B 20 74.78 -154.07 REMARK 500 SER B 34 -14.78 -49.86 REMARK 500 TYR B 38 -16.46 -48.44 REMARK 500 ASN B 107 -159.92 -115.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 VAL A 113 CYS A 114 -144.19 REMARK 500 REMARK 500 REMARK: NULL DBREF 4I82 A 1 134 UNP Q97NZ8 Q97NZ8_STRPN 1 134 DBREF 4I82 B 1 134 UNP Q97NZ8 Q97NZ8_STRPN 1 134 SEQADV 4I82 SER A -2 UNP Q97NZ8 EXPRESSION TAG SEQADV 4I82 ASN A -1 UNP Q97NZ8 EXPRESSION TAG SEQADV 4I82 ALA A 0 UNP Q97NZ8 EXPRESSION TAG SEQADV 4I82 SER B -2 UNP Q97NZ8 EXPRESSION TAG SEQADV 4I82 ASN B -1 UNP Q97NZ8 EXPRESSION TAG SEQADV 4I82 ALA B 0 UNP Q97NZ8 EXPRESSION TAG SEQRES 1 A 137 SER ASN ALA MET LYS ASP PHE HIS PHE ASP ALA ILE SER SEQRES 2 A 137 ALA PHE GLU ASN TYR GLU ILE GLU LYS MET ARG ASP GLY SEQRES 3 A 137 HIS VAL VAL VAL THR THR LYS VAL VAL ASN SER SER LEU SEQRES 4 A 137 ASN TYR TYR GLY ASN ALA HIS GLY GLY TYR LEU PHE THR SEQRES 5 A 137 LEU CYS ASP GLN ILE SER GLY LEU VAL VAL ILE SER LEU SEQRES 6 A 137 GLY LEU ASP GLY VAL THR LEU GLN SER SER ILE ASN TYR SEQRES 7 A 137 LEU LYS ALA GLY LYS LEU ASP ASP VAL LEU THR ILE LYS SEQRES 8 A 137 GLY GLU CYS VAL HIS GLN GLY ARG THR THR CYS VAL MET SEQRES 9 A 137 ASP VAL ASP ILE THR ASN GLN GLU GLY ARG ASN VAL CYS SEQRES 10 A 137 LYS ALA THR PHE THR MET PHE VAL THR GLY GLN ARG SER SEQRES 11 A 137 GLU GLU ARG ARG VAL ARG ILE SEQRES 1 B 137 SER ASN ALA MET LYS ASP PHE HIS PHE ASP ALA ILE SER SEQRES 2 B 137 ALA PHE GLU ASN TYR GLU ILE GLU LYS MET ARG ASP GLY SEQRES 3 B 137 HIS VAL VAL VAL THR THR LYS VAL VAL ASN SER SER LEU SEQRES 4 B 137 ASN TYR TYR GLY ASN ALA HIS GLY GLY TYR LEU PHE THR SEQRES 5 B 137 LEU CYS ASP GLN ILE SER GLY LEU VAL VAL ILE SER LEU SEQRES 6 B 137 GLY LEU ASP GLY VAL THR LEU GLN SER SER ILE ASN TYR SEQRES 7 B 137 LEU LYS ALA GLY LYS LEU ASP ASP VAL LEU THR ILE LYS SEQRES 8 B 137 GLY GLU CYS VAL HIS GLN GLY ARG THR THR CYS VAL MET SEQRES 9 B 137 ASP VAL ASP ILE THR ASN GLN GLU GLY ARG ASN VAL CYS SEQRES 10 B 137 LYS ALA THR PHE THR MET PHE VAL THR GLY GLN ARG SER SEQRES 11 B 137 GLU GLU ARG ARG VAL ARG ILE HELIX 1 1 VAL A 32 LEU A 36 5 5 HELIX 2 2 HIS A 43 SER A 61 1 19 HELIX 3 3 VAL B 32 LEU B 36 5 5 HELIX 4 4 HIS B 43 LEU B 62 1 20 SHEET 1 A 6 GLU A 16 ARG A 21 0 SHEET 2 A 6 HIS A 24 LYS A 30 -1 O HIS A 24 N ARG A 21 SHEET 3 A 6 VAL A 84 GLN A 94 -1 O LEU A 85 N THR A 29 SHEET 4 A 6 THR A 98 THR A 106 -1 O THR A 106 N THR A 86 SHEET 5 A 6 ASN A 112 GLY A 124 -1 O VAL A 113 N ILE A 105 SHEET 6 A 6 ASP A 65 TYR A 75 -1 N GLN A 70 O THR A 119 SHEET 1 B 6 GLU B 16 MET B 20 0 SHEET 2 B 6 HIS B 24 LYS B 30 -1 O VAL B 26 N LYS B 19 SHEET 3 B 6 VAL B 84 GLN B 94 -1 O ILE B 87 N VAL B 27 SHEET 4 B 6 THR B 98 THR B 106 -1 O THR B 106 N THR B 86 SHEET 5 B 6 ASN B 112 GLY B 124 -1 O ALA B 116 N VAL B 103 SHEET 6 B 6 ASP B 65 TYR B 75 -1 N VAL B 67 O PHE B 121 CRYST1 46.260 118.470 87.620 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021617 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008441 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011413 0.00000