HEADER TRANSCRIPTION/TRANSCRIPTION INHIBITOR 08-DEC-12 4IBI TITLE EBOLA VIRUS VP35 BOUND TO SMALL MOLECULE COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYMERASE COFACTOR VP35; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 215-340; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: EBOLA VIRUS; SOURCE 3 ORGANISM_COMMON: ZEBOV; SOURCE 4 ORGANISM_TAXID: 128952; SOURCE 5 STRAIN: MAYINGA-76; SOURCE 6 GENE: VP35; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS INTERFERON INHIBITOR DOMAIN, TRANSCRIPTION-TRANSCRIPTION INHIBITOR KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR C.S.BROWN,D.W.LEUNG,W.XU,D.M.BOREK,Z.OTWINOWSKI,P.RAMANAN,A.J.STUBBS, AUTHOR 2 D.S.PETERSON,J.M.BINNING,G.K.AMARASINGHE REVDAT 5 29-NOV-23 4IBI 1 REMARK SEQADV REVDAT 4 17-JUL-19 4IBI 1 REMARK REVDAT 3 15-NOV-17 4IBI 1 REMARK REVDAT 2 14-MAY-14 4IBI 1 JRNL REVDAT 1 19-MAR-14 4IBI 0 JRNL AUTH C.S.BROWN,M.S.LEE,D.W.LEUNG,T.WANG,W.XU,P.LUTHRA, JRNL AUTH 2 M.ANANTPADMA,R.S.SHABMAN,L.M.MELITO,K.S.MACMILLAN,D.M.BOREK, JRNL AUTH 3 Z.OTWINOWSKI,P.RAMANAN,A.J.STUBBS,D.S.PETERSON,J.M.BINNING, JRNL AUTH 4 M.TONELLI,M.A.OLSON,R.A.DAVEY,J.M.READY,C.F.BASLER, JRNL AUTH 5 G.K.AMARASINGHE JRNL TITL IN SILICO DERIVED SMALL MOLECULES BIND THE FILOVIRUS VP35 JRNL TITL 2 PROTEIN AND INHIBIT ITS POLYMERASE COFACTOR ACTIVITY. JRNL REF J.MOL.BIOL. V. 426 2045 2014 JRNL REFN ISSN 0022-2836 JRNL PMID 24495995 JRNL DOI 10.1016/J.JMB.2014.01.010 REMARK 2 REMARK 2 RESOLUTION. 1.47 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.1_1168 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.47 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.91 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 3 NUMBER OF REFLECTIONS : 40482 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 2055 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.9243 - 3.6331 0.99 2828 151 0.1616 0.1849 REMARK 3 2 3.6331 - 2.8839 1.00 2707 157 0.1693 0.2322 REMARK 3 3 2.8839 - 2.5194 1.00 2661 165 0.1836 0.2211 REMARK 3 4 2.5194 - 2.2891 1.00 2714 117 0.1695 0.2278 REMARK 3 5 2.2891 - 2.1250 1.00 2641 141 0.1728 0.2202 REMARK 3 6 2.1250 - 1.9997 1.00 2675 136 0.1741 0.2272 REMARK 3 7 1.9997 - 1.8996 1.00 2626 136 0.1953 0.2466 REMARK 3 8 1.8996 - 1.8169 1.00 2632 134 0.2049 0.2466 REMARK 3 9 1.8169 - 1.7469 1.00 2640 147 0.2380 0.3581 REMARK 3 10 1.7469 - 1.6867 1.00 2637 115 0.2512 0.3252 REMARK 3 11 1.6867 - 1.6339 1.00 2634 152 0.2840 0.3618 REMARK 3 12 1.6339 - 1.5872 0.97 2538 134 0.3212 0.3688 REMARK 3 13 1.5872 - 1.5454 0.90 2345 136 0.3352 0.3967 REMARK 3 14 1.5454 - 1.5077 0.83 2132 127 0.3290 0.3799 REMARK 3 15 1.5077 - 1.4734 0.76 2017 107 0.3255 0.3673 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 33.570 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.65 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2178 REMARK 3 ANGLE : 1.346 2998 REMARK 3 CHIRALITY : 0.094 323 REMARK 3 PLANARITY : 0.008 393 REMARK 3 DIHEDRAL : 15.456 899 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 14 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 218 THROUGH 231 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.6448 22.3665 -12.0442 REMARK 3 T TENSOR REMARK 3 T11: 0.1882 T22: 0.1050 REMARK 3 T33: 0.2187 T12: -0.0189 REMARK 3 T13: -0.0095 T23: -0.0450 REMARK 3 L TENSOR REMARK 3 L11: 6.5591 L22: 3.1066 REMARK 3 L33: 3.2902 L12: 0.9057 REMARK 3 L13: -0.8567 L23: 0.1845 REMARK 3 S TENSOR REMARK 3 S11: -0.1560 S12: 0.3154 S13: -0.8746 REMARK 3 S21: -0.1106 S22: 0.1038 S23: 0.1301 REMARK 3 S31: 0.5122 S32: -0.1873 S33: -0.0125 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 232 THROUGH 269 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.1189 29.0505 -8.3083 REMARK 3 T TENSOR REMARK 3 T11: 0.0759 T22: 0.0098 REMARK 3 T33: 0.0651 T12: -0.0042 REMARK 3 T13: 0.0072 T23: -0.0241 REMARK 3 L TENSOR REMARK 3 L11: 4.1281 L22: 0.5974 REMARK 3 L33: 1.9000 L12: -0.5079 REMARK 3 L13: -0.5720 L23: -0.2584 REMARK 3 S TENSOR REMARK 3 S11: -0.0206 S12: 0.0467 S13: -0.1297 REMARK 3 S21: 0.0034 S22: 0.0449 S23: 0.0506 REMARK 3 S31: -0.0347 S32: -0.0932 S33: -0.0155 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 270 THROUGH 292 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.6240 37.1095 -6.3112 REMARK 3 T TENSOR REMARK 3 T11: 0.1593 T22: 0.0659 REMARK 3 T33: 0.2186 T12: -0.0078 REMARK 3 T13: 0.0094 T23: 0.0068 REMARK 3 L TENSOR REMARK 3 L11: 3.6053 L22: 0.2610 REMARK 3 L33: 4.9291 L12: -0.4839 REMARK 3 L13: -1.3774 L23: -0.5279 REMARK 3 S TENSOR REMARK 3 S11: 0.2590 S12: 0.1482 S13: 0.6873 REMARK 3 S21: 0.0380 S22: 0.0596 S23: 0.0565 REMARK 3 S31: -0.5906 S32: -0.1652 S33: -0.1926 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 293 THROUGH 304 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.6903 20.6997 9.3741 REMARK 3 T TENSOR REMARK 3 T11: 0.2060 T22: 0.1783 REMARK 3 T33: 0.1877 T12: 0.0043 REMARK 3 T13: 0.0258 T23: 0.0432 REMARK 3 L TENSOR REMARK 3 L11: 6.2074 L22: 1.2730 REMARK 3 L33: 4.7258 L12: -1.6825 REMARK 3 L13: -0.5614 L23: -0.1580 REMARK 3 S TENSOR REMARK 3 S11: -0.4065 S12: -0.6967 S13: -0.7241 REMARK 3 S21: 0.1694 S22: 0.2460 S23: 0.1719 REMARK 3 S31: 0.6859 S32: 0.0336 S33: 0.0979 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 305 THROUGH 319 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.2299 31.5613 7.3102 REMARK 3 T TENSOR REMARK 3 T11: 0.0898 T22: 0.1164 REMARK 3 T33: 0.0979 T12: -0.0137 REMARK 3 T13: -0.0140 T23: 0.0043 REMARK 3 L TENSOR REMARK 3 L11: 2.0299 L22: 0.9058 REMARK 3 L33: 4.4646 L12: 1.1431 REMARK 3 L13: 0.9791 L23: -0.3466 REMARK 3 S TENSOR REMARK 3 S11: -0.0451 S12: -0.0811 S13: 0.0546 REMARK 3 S21: -0.0706 S22: -0.0364 S23: 0.0880 REMARK 3 S31: -0.1710 S32: 0.1816 S33: 0.0829 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 320 THROUGH 330 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.4070 32.0537 6.2139 REMARK 3 T TENSOR REMARK 3 T11: 0.1033 T22: 0.1030 REMARK 3 T33: 0.1546 T12: -0.0336 REMARK 3 T13: 0.0360 T23: -0.0550 REMARK 3 L TENSOR REMARK 3 L11: 5.2926 L22: 7.0549 REMARK 3 L33: 7.3347 L12: -2.5871 REMARK 3 L13: 1.8592 L23: -3.0051 REMARK 3 S TENSOR REMARK 3 S11: 0.0537 S12: -0.1795 S13: 0.3644 REMARK 3 S21: -0.0071 S22: 0.0935 S23: 0.3954 REMARK 3 S31: -0.4205 S32: 0.2485 S33: -0.1248 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 331 THROUGH 340 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.8825 27.1947 11.5468 REMARK 3 T TENSOR REMARK 3 T11: 0.1538 T22: 0.1834 REMARK 3 T33: 0.1267 T12: -0.0087 REMARK 3 T13: 0.0208 T23: -0.0125 REMARK 3 L TENSOR REMARK 3 L11: 4.3507 L22: 4.2737 REMARK 3 L33: 2.8889 L12: -0.6736 REMARK 3 L13: -0.2878 L23: -3.1020 REMARK 3 S TENSOR REMARK 3 S11: -0.0234 S12: -0.5439 S13: -0.3047 REMARK 3 S21: 0.1878 S22: 0.0221 S23: 0.0967 REMARK 3 S31: 0.3250 S32: 0.2726 S33: -0.0371 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 214 THROUGH 220 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.3862 19.7148 40.5510 REMARK 3 T TENSOR REMARK 3 T11: 0.4595 T22: 0.5341 REMARK 3 T33: 0.3762 T12: 0.0459 REMARK 3 T13: -0.1270 T23: 0.1933 REMARK 3 L TENSOR REMARK 3 L11: 2.0245 L22: 0.5564 REMARK 3 L33: 5.7862 L12: -0.7831 REMARK 3 L13: 3.2392 L23: -0.8571 REMARK 3 S TENSOR REMARK 3 S11: 0.0789 S12: -0.7450 S13: -0.3793 REMARK 3 S21: 0.6303 S22: -0.4870 S23: -0.8102 REMARK 3 S31: 0.7910 S32: 0.4845 S33: 0.2587 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 221 THROUGH 252 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.4796 23.9472 30.0933 REMARK 3 T TENSOR REMARK 3 T11: 0.1578 T22: 0.0557 REMARK 3 T33: 0.1890 T12: 0.0094 REMARK 3 T13: 0.0007 T23: 0.0081 REMARK 3 L TENSOR REMARK 3 L11: 2.8482 L22: 0.8334 REMARK 3 L33: 1.9517 L12: 0.5313 REMARK 3 L13: -0.4861 L23: 0.1016 REMARK 3 S TENSOR REMARK 3 S11: -0.0268 S12: -0.0091 S13: -0.6473 REMARK 3 S21: -0.0369 S22: 0.0184 S23: -0.0645 REMARK 3 S31: 0.2169 S32: 0.0685 S33: -0.0372 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 253 THROUGH 292 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.5284 35.0339 32.9492 REMARK 3 T TENSOR REMARK 3 T11: 0.1211 T22: 0.0817 REMARK 3 T33: 0.1405 T12: -0.0146 REMARK 3 T13: 0.0030 T23: -0.0169 REMARK 3 L TENSOR REMARK 3 L11: 3.1964 L22: 0.2026 REMARK 3 L33: 2.6763 L12: -0.1014 REMARK 3 L13: -1.5130 L23: 0.2147 REMARK 3 S TENSOR REMARK 3 S11: 0.0590 S12: -0.1698 S13: 0.3211 REMARK 3 S21: 0.0051 S22: 0.0446 S23: -0.0529 REMARK 3 S31: -0.2342 S32: 0.1173 S33: -0.1120 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 293 THROUGH 297 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.4431 23.4835 13.5681 REMARK 3 T TENSOR REMARK 3 T11: 0.1494 T22: 0.1524 REMARK 3 T33: 0.1744 T12: 0.0470 REMARK 3 T13: -0.0169 T23: -0.0612 REMARK 3 L TENSOR REMARK 3 L11: 4.3465 L22: 2.9364 REMARK 3 L33: 4.6277 L12: 2.8556 REMARK 3 L13: 2.3630 L23: 3.4333 REMARK 3 S TENSOR REMARK 3 S11: 0.0209 S12: 0.3933 S13: -0.5225 REMARK 3 S21: 0.1376 S22: 0.3590 S23: -0.2298 REMARK 3 S31: 0.2031 S32: 0.2754 S33: -0.1149 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 298 THROUGH 310 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.8019 21.2495 17.1587 REMARK 3 T TENSOR REMARK 3 T11: 0.1961 T22: 0.1183 REMARK 3 T33: 0.2280 T12: -0.0666 REMARK 3 T13: 0.0185 T23: -0.0366 REMARK 3 L TENSOR REMARK 3 L11: 2.9797 L22: 4.5799 REMARK 3 L33: 4.5842 L12: -2.7777 REMARK 3 L13: 0.0323 L23: 1.6221 REMARK 3 S TENSOR REMARK 3 S11: -0.1376 S12: 0.2850 S13: -0.7017 REMARK 3 S21: 0.2895 S22: 0.0202 S23: 0.2433 REMARK 3 S31: 0.7634 S32: -0.4223 S33: 0.0614 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 311 THROUGH 319 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.3267 36.5290 13.2649 REMARK 3 T TENSOR REMARK 3 T11: 0.1241 T22: 0.1084 REMARK 3 T33: 0.1693 T12: -0.0392 REMARK 3 T13: 0.0030 T23: 0.0727 REMARK 3 L TENSOR REMARK 3 L11: 3.2174 L22: 1.9760 REMARK 3 L33: 3.1141 L12: 0.3889 REMARK 3 L13: 0.1126 L23: 0.8182 REMARK 3 S TENSOR REMARK 3 S11: -0.0083 S12: 0.3023 S13: 0.3113 REMARK 3 S21: 0.0843 S22: -0.0634 S23: -0.1059 REMARK 3 S31: -0.4640 S32: 0.2560 S33: -0.1100 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 320 THROUGH 340 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.9074 29.8585 14.7338 REMARK 3 T TENSOR REMARK 3 T11: 0.0800 T22: 0.0562 REMARK 3 T33: 0.1253 T12: -0.0017 REMARK 3 T13: -0.0010 T23: 0.0228 REMARK 3 L TENSOR REMARK 3 L11: 4.1119 L22: 2.1596 REMARK 3 L33: 5.9132 L12: 0.6569 REMARK 3 L13: 0.7543 L23: 0.6364 REMARK 3 S TENSOR REMARK 3 S11: 0.1019 S12: 0.2885 S13: 0.1588 REMARK 3 S21: 0.1768 S22: 0.0868 S23: -0.2906 REMARK 3 S31: 0.1110 S32: 0.2812 S33: -0.0291 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: A REMARK 3 SELECTION : B REMARK 3 ATOM PAIRS NUMBER : 160 REMARK 3 RMSD : 0.090 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4IBI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-DEC-12. REMARK 100 THE DEPOSITION ID IS D_1000076545. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793376 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40626 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.460 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.9 REMARK 200 DATA REDUNDANCY : 7.900 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.46 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 33.3 REMARK 200 DATA REDUNDANCY IN SHELL : 4.70 REMARK 200 R MERGE FOR SHELL (I) : 0.54100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.68 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM SODIUM CITRATE, PH5.5, 15% REMARK 280 PEG3350, 10%DMS, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.65100 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 36.32650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.72550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 36.32650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.65100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 32.72550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 212 REMARK 465 HIS A 213 REMARK 465 MET A 214 REMARK 465 GLY A 215 REMARK 465 LYS A 216 REMARK 465 PRO A 217 REMARK 465 GLY B 212 REMARK 465 HIS B 213 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 541 O HOH A 550 2.02 REMARK 500 O HOH B 532 O HOH B 594 2.07 REMARK 500 O HOH A 570 O HOH A 575 2.14 REMARK 500 O HOH B 554 O HOH B 560 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 569 O HOH B 591 4556 2.01 REMARK 500 O GLY B 215 O HOH B 554 4556 2.10 REMARK 500 O HOH B 554 O HOH B 576 4456 2.13 REMARK 500 O HOH A 596 O HOH B 604 3555 2.16 REMARK 500 O HOH A 579 O HOH B 599 2564 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 316 N - CA - C ANGL. DEV. = 15.7 DEGREES REMARK 500 PRO B 316 CA - C - N ANGL. DEV. = 13.5 DEGREES REMARK 500 SER B 317 C - N - CA ANGL. DEV. = 17.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 316 1.42 -62.20 REMARK 500 SER A 317 53.50 162.68 REMARK 500 SER A 317 53.50 96.53 REMARK 500 SER B 317 -32.75 129.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 SER B 317 10.72 REMARK 500 SER B 317 -10.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1D8 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1D8 B 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4IBB RELATED DB: PDB REMARK 900 RELATED ID: 4IBC RELATED DB: PDB REMARK 900 RELATED ID: 4IBD RELATED DB: PDB REMARK 900 RELATED ID: 4IBE RELATED DB: PDB REMARK 900 RELATED ID: 4IBF RELATED DB: PDB REMARK 900 RELATED ID: 4IBG RELATED DB: PDB REMARK 900 RELATED ID: 4IBH RELATED DB: PDB REMARK 900 RELATED ID: 4IBJ RELATED DB: PDB REMARK 900 RELATED ID: 4IBK RELATED DB: PDB DBREF 4IBI A 215 340 UNP Q05127 VP35_EBOZM 215 340 DBREF 4IBI B 215 340 UNP Q05127 VP35_EBOZM 215 340 SEQADV 4IBI GLY A 212 UNP Q05127 EXPRESSION TAG SEQADV 4IBI HIS A 213 UNP Q05127 EXPRESSION TAG SEQADV 4IBI MET A 214 UNP Q05127 EXPRESSION TAG SEQADV 4IBI GLY B 212 UNP Q05127 EXPRESSION TAG SEQADV 4IBI HIS B 213 UNP Q05127 EXPRESSION TAG SEQADV 4IBI MET B 214 UNP Q05127 EXPRESSION TAG SEQRES 1 A 129 GLY HIS MET GLY LYS PRO ASP ILE SER ALA LYS ASP LEU SEQRES 2 A 129 ARG ASN ILE MET TYR ASP HIS LEU PRO GLY PHE GLY THR SEQRES 3 A 129 ALA PHE HIS GLN LEU VAL GLN VAL ILE CYS LYS LEU GLY SEQRES 4 A 129 LYS ASP SER ASN SER LEU ASP ILE ILE HIS ALA GLU PHE SEQRES 5 A 129 GLN ALA SER LEU ALA GLU GLY ASP SER PRO GLN CYS ALA SEQRES 6 A 129 LEU ILE GLN ILE THR LYS ARG VAL PRO ILE PHE GLN ASP SEQRES 7 A 129 ALA ALA PRO PRO VAL ILE HIS ILE ARG SER ARG GLY ASP SEQRES 8 A 129 ILE PRO ARG ALA CYS GLN LYS SER LEU ARG PRO VAL PRO SEQRES 9 A 129 PRO SER PRO LYS ILE ASP ARG GLY TRP VAL CYS VAL PHE SEQRES 10 A 129 GLN LEU GLN ASP GLY LYS THR LEU GLY LEU LYS ILE SEQRES 1 B 129 GLY HIS MET GLY LYS PRO ASP ILE SER ALA LYS ASP LEU SEQRES 2 B 129 ARG ASN ILE MET TYR ASP HIS LEU PRO GLY PHE GLY THR SEQRES 3 B 129 ALA PHE HIS GLN LEU VAL GLN VAL ILE CYS LYS LEU GLY SEQRES 4 B 129 LYS ASP SER ASN SER LEU ASP ILE ILE HIS ALA GLU PHE SEQRES 5 B 129 GLN ALA SER LEU ALA GLU GLY ASP SER PRO GLN CYS ALA SEQRES 6 B 129 LEU ILE GLN ILE THR LYS ARG VAL PRO ILE PHE GLN ASP SEQRES 7 B 129 ALA ALA PRO PRO VAL ILE HIS ILE ARG SER ARG GLY ASP SEQRES 8 B 129 ILE PRO ARG ALA CYS GLN LYS SER LEU ARG PRO VAL PRO SEQRES 9 B 129 PRO SER PRO LYS ILE ASP ARG GLY TRP VAL CYS VAL PHE SEQRES 10 B 129 GLN LEU GLN ASP GLY LYS THR LEU GLY LEU LYS ILE HET 1D8 A 401 38 HET 1D8 B 401 38 HETNAM 1D8 3-{(2S)-2-(7-CHLORO-1,3-BENZODIOXOL-5-YL)-4-HYDROXY-5- HETNAM 2 1D8 OXO-3-[3-(TRIFLUOROMETHYL)BENZOYL]-2,5-DIHYDRO-1H- HETNAM 3 1D8 PYRROL-1-YL}BENZOIC ACID FORMUL 3 1D8 2(C26 H15 CL F3 N O7) FORMUL 5 HOH *259(H2 O) HELIX 1 1 SER A 220 ASP A 230 1 11 HELIX 2 2 THR A 237 SER A 253 1 17 HELIX 3 3 SER A 255 GLU A 269 1 15 HELIX 4 4 SER A 272 VAL A 284 1 13 HELIX 5 5 PRO A 285 GLN A 288 5 4 HELIX 6 6 SER A 299 ILE A 303 5 5 HELIX 7 7 PRO A 304 LYS A 309 5 6 HELIX 8 8 LYS A 319 ARG A 322 5 4 HELIX 9 9 SER B 220 ASP B 230 1 11 HELIX 10 10 THR B 237 SER B 253 1 17 HELIX 11 11 SER B 255 GLU B 269 1 15 HELIX 12 12 SER B 272 VAL B 284 1 13 HELIX 13 13 PRO B 285 GLN B 288 5 4 HELIX 14 14 SER B 299 ILE B 303 5 5 HELIX 15 15 PRO B 304 LYS B 309 5 6 HELIX 16 16 LYS B 319 ARG B 322 5 4 SHEET 1 A 4 VAL A 294 ILE A 297 0 SHEET 2 A 4 TRP A 324 LEU A 330 1 O VAL A 327 N ILE A 295 SHEET 3 A 4 THR A 335 LYS A 339 -1 O LEU A 336 N PHE A 328 SHEET 4 A 4 LEU A 311 ARG A 312 -1 N ARG A 312 O GLY A 337 SHEET 1 B 4 VAL B 294 ILE B 297 0 SHEET 2 B 4 TRP B 324 LEU B 330 1 O VAL B 327 N ILE B 295 SHEET 3 B 4 THR B 335 LYS B 339 -1 O LEU B 336 N PHE B 328 SHEET 4 B 4 LEU B 311 ARG B 312 -1 N ARG B 312 O GLY B 337 CISPEP 1 PRO B 316 SER B 317 0 -6.69 SITE 1 AC1 12 GLN A 241 GLN A 244 LYS A 248 LYS A 251 SITE 2 AC1 12 PRO A 293 ILE A 295 ASP A 302 PRO A 304 SITE 3 AC1 12 ARG A 305 PHE A 328 HOH A 590 GLN B 329 SITE 1 AC2 10 GLN A 329 GLN B 241 GLN B 244 LYS B 248 SITE 2 AC2 10 LYS B 251 PRO B 293 ASP B 302 PRO B 304 SITE 3 AC2 10 PHE B 328 HOH B 578 CRYST1 51.302 65.451 72.653 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019492 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015279 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013764 0.00000