HEADER TRANSCRIPTION/TRANSCRIPTION INHIBITOR 08-DEC-12 4IBJ TITLE EBOLA VIRUS VP35 BOUND TO SMALL MOLECULE COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYMERASE COFACTOR VP35; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 215-340; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: EBOLA VIRUS; SOURCE 3 ORGANISM_COMMON: ZEBOV; SOURCE 4 ORGANISM_TAXID: 128952; SOURCE 5 STRAIN: MAYINGA-76; SOURCE 6 GENE: VP35; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS INTERFERON INHIBITOR DOMAIN, TRANSCRIPTION-TRANSCRIPTION INHIBITOR KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR C.S.BROWN,D.W.LEUNG,W.XU,D.M.BOREK,Z.OTWINOWSKI,P.RAMANAN,A.J.STUBBS, AUTHOR 2 D.S.PETERSON,J.M.BINNING,G.K.AMARASINGHE REVDAT 5 28-FEB-24 4IBJ 1 REMARK SEQADV REVDAT 4 17-JUL-19 4IBJ 1 REMARK REVDAT 3 15-NOV-17 4IBJ 1 REMARK REVDAT 2 14-MAY-14 4IBJ 1 JRNL REVDAT 1 19-MAR-14 4IBJ 0 JRNL AUTH C.S.BROWN,M.S.LEE,D.W.LEUNG,T.WANG,W.XU,P.LUTHRA, JRNL AUTH 2 M.ANANTPADMA,R.S.SHABMAN,L.M.MELITO,K.S.MACMILLAN,D.M.BOREK, JRNL AUTH 3 Z.OTWINOWSKI,P.RAMANAN,A.J.STUBBS,D.S.PETERSON,J.M.BINNING, JRNL AUTH 4 M.TONELLI,M.A.OLSON,R.A.DAVEY,J.M.READY,C.F.BASLER, JRNL AUTH 5 G.K.AMARASINGHE JRNL TITL IN SILICO DERIVED SMALL MOLECULES BIND THE FILOVIRUS VP35 JRNL TITL 2 PROTEIN AND INHIBIT ITS POLYMERASE COFACTOR ACTIVITY. JRNL REF J.MOL.BIOL. V. 426 2045 2014 JRNL REFN ISSN 0022-2836 JRNL PMID 24495995 JRNL DOI 10.1016/J.JMB.2014.01.010 REMARK 2 REMARK 2 RESOLUTION. 1.54 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.1_1168 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.54 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.42 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 84.7 REMARK 3 NUMBER OF REFLECTIONS : 31662 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.120 REMARK 3 FREE R VALUE TEST SET COUNT : 3203 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.4263 - 4.3756 0.99 1563 192 0.2002 0.2856 REMARK 3 2 4.3756 - 3.4740 1.00 1504 165 0.1553 0.1912 REMARK 3 3 3.4740 - 3.0351 1.00 1496 163 0.1783 0.1999 REMARK 3 4 3.0351 - 2.7577 1.00 1478 178 0.1779 0.2117 REMARK 3 5 2.7577 - 2.5601 1.00 1467 161 0.1798 0.2402 REMARK 3 6 2.5601 - 2.4092 1.00 1485 137 0.1739 0.2146 REMARK 3 7 2.4092 - 2.2886 1.00 1462 165 0.1682 0.2064 REMARK 3 8 2.2886 - 2.1890 1.00 1462 172 0.1749 0.2738 REMARK 3 9 2.1890 - 2.1047 1.00 1465 159 0.1816 0.1856 REMARK 3 10 2.1047 - 2.0321 1.00 1442 156 0.1826 0.2509 REMARK 3 11 2.0321 - 1.9686 0.99 1445 141 0.1946 0.2408 REMARK 3 12 1.9686 - 1.9123 0.96 1372 183 0.2057 0.2162 REMARK 3 13 1.9123 - 1.8620 0.90 1270 182 0.1955 0.2412 REMARK 3 14 1.8620 - 1.8166 0.86 1237 149 0.2091 0.2083 REMARK 3 15 1.8166 - 1.7753 0.82 1209 115 0.1959 0.3124 REMARK 3 16 1.7753 - 1.7375 0.78 1130 132 0.2196 0.2946 REMARK 3 17 1.7375 - 1.7027 0.74 1086 104 0.1989 0.2260 REMARK 3 18 1.7027 - 1.6706 0.69 997 108 0.2062 0.2282 REMARK 3 19 1.6706 - 1.6408 0.65 946 96 0.2064 0.2614 REMARK 3 20 1.6408 - 1.6129 0.60 825 111 0.1996 0.2647 REMARK 3 21 1.6129 - 1.5869 0.56 821 79 0.1948 0.2130 REMARK 3 22 1.5869 - 1.5625 0.50 698 94 0.2047 0.2395 REMARK 3 23 1.5625 - 1.5395 0.41 599 61 0.2177 0.2286 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.750 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.45 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2149 REMARK 3 ANGLE : 1.092 2952 REMARK 3 CHIRALITY : 0.063 316 REMARK 3 PLANARITY : 0.004 378 REMARK 3 DIHEDRAL : 19.286 865 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 14 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 217 THROUGH 252 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.9950 24.6220 -7.4260 REMARK 3 T TENSOR REMARK 3 T11: 0.1273 T22: 0.0850 REMARK 3 T33: 0.1278 T12: -0.0044 REMARK 3 T13: -0.0076 T23: -0.0117 REMARK 3 L TENSOR REMARK 3 L11: 5.3523 L22: 2.0696 REMARK 3 L33: 2.3457 L12: -0.8173 REMARK 3 L13: -0.7290 L23: -0.6132 REMARK 3 S TENSOR REMARK 3 S11: 0.0056 S12: 0.0434 S13: -0.4879 REMARK 3 S21: -0.0854 S22: 0.0491 S23: 0.1685 REMARK 3 S31: 0.1411 S32: -0.1299 S33: -0.0656 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 253 THROUGH 292 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.5676 35.7789 -9.4539 REMARK 3 T TENSOR REMARK 3 T11: 0.1359 T22: 0.1056 REMARK 3 T33: 0.1525 T12: 0.0198 REMARK 3 T13: 0.0058 T23: 0.0120 REMARK 3 L TENSOR REMARK 3 L11: 4.0740 L22: 0.3659 REMARK 3 L33: 2.5446 L12: 0.2939 REMARK 3 L13: -1.1451 L23: -0.4688 REMARK 3 S TENSOR REMARK 3 S11: 0.0668 S12: 0.1982 S13: 0.2328 REMARK 3 S21: -0.0017 S22: 0.0605 S23: 0.0516 REMARK 3 S31: -0.1546 S32: -0.0940 S33: -0.1575 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 293 THROUGH 310 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.3920 22.1262 7.1012 REMARK 3 T TENSOR REMARK 3 T11: 0.2238 T22: 0.1343 REMARK 3 T33: 0.1115 T12: 0.0037 REMARK 3 T13: 0.0167 T23: 0.0064 REMARK 3 L TENSOR REMARK 3 L11: 7.5944 L22: 4.1698 REMARK 3 L33: 3.2946 L12: -0.0520 REMARK 3 L13: 0.6454 L23: -0.6598 REMARK 3 S TENSOR REMARK 3 S11: -0.0231 S12: -0.4288 S13: -0.6653 REMARK 3 S21: 0.1159 S22: -0.1609 S23: 0.0380 REMARK 3 S31: 0.5921 S32: -0.0842 S33: 0.1939 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 311 THROUGH 340 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.3476 31.7821 9.1397 REMARK 3 T TENSOR REMARK 3 T11: 0.1417 T22: 0.1476 REMARK 3 T33: 0.1176 T12: 0.0145 REMARK 3 T13: 0.0157 T23: -0.0364 REMARK 3 L TENSOR REMARK 3 L11: 4.5541 L22: 1.9639 REMARK 3 L33: 5.9375 L12: -0.5697 REMARK 3 L13: 0.9087 L23: -0.3427 REMARK 3 S TENSOR REMARK 3 S11: -0.0589 S12: -0.3090 S13: 0.1200 REMARK 3 S21: 0.0743 S22: 0.0782 S23: 0.0750 REMARK 3 S31: -0.0722 S32: -0.0960 S33: -0.0310 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 217 THROUGH 231 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.6482 22.5531 35.6679 REMARK 3 T TENSOR REMARK 3 T11: 0.1586 T22: 0.1763 REMARK 3 T33: 0.2016 T12: 0.0085 REMARK 3 T13: -0.0265 T23: 0.0579 REMARK 3 L TENSOR REMARK 3 L11: 7.5234 L22: 4.3078 REMARK 3 L33: 2.2911 L12: -3.1422 REMARK 3 L13: 1.0881 L23: -0.4377 REMARK 3 S TENSOR REMARK 3 S11: 0.0146 S12: -0.3841 S13: -0.6903 REMARK 3 S21: 0.1549 S22: 0.0222 S23: -0.1091 REMARK 3 S31: 0.2201 S32: 0.2768 S33: -0.0427 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 232 THROUGH 253 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.1586 26.1483 27.3838 REMARK 3 T TENSOR REMARK 3 T11: 0.0936 T22: 0.0759 REMARK 3 T33: 0.1091 T12: 0.0041 REMARK 3 T13: 0.0076 T23: -0.0092 REMARK 3 L TENSOR REMARK 3 L11: 8.1911 L22: 1.6207 REMARK 3 L33: 2.3104 L12: 1.2087 REMARK 3 L13: 0.1090 L23: 0.1060 REMARK 3 S TENSOR REMARK 3 S11: -0.0854 S12: -0.0065 S13: -0.6588 REMARK 3 S21: -0.0376 S22: 0.0551 S23: -0.1568 REMARK 3 S31: 0.1309 S32: 0.0377 S33: 0.0292 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 254 THROUGH 269 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.3484 33.3715 37.9436 REMARK 3 T TENSOR REMARK 3 T11: 0.0876 T22: 0.1782 REMARK 3 T33: 0.1048 T12: -0.0011 REMARK 3 T13: -0.0223 T23: -0.0167 REMARK 3 L TENSOR REMARK 3 L11: 3.3644 L22: 3.0319 REMARK 3 L33: 5.3032 L12: -2.1591 REMARK 3 L13: -3.8384 L23: 1.3255 REMARK 3 S TENSOR REMARK 3 S11: -0.0093 S12: -0.3654 S13: 0.2590 REMARK 3 S21: 0.1212 S22: 0.1483 S23: -0.1753 REMARK 3 S31: -0.0168 S32: 0.0440 S33: -0.1295 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 270 THROUGH 283 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.8321 36.9476 33.5373 REMARK 3 T TENSOR REMARK 3 T11: 0.1461 T22: 0.1288 REMARK 3 T33: 0.1583 T12: 0.0199 REMARK 3 T13: -0.0098 T23: -0.0348 REMARK 3 L TENSOR REMARK 3 L11: 7.5693 L22: 0.5676 REMARK 3 L33: 8.2535 L12: -0.1249 REMARK 3 L13: -6.8428 L23: -0.6079 REMARK 3 S TENSOR REMARK 3 S11: 0.4134 S12: -0.2251 S13: 0.5710 REMARK 3 S21: 0.1684 S22: 0.0605 S23: -0.1368 REMARK 3 S31: -0.5182 S32: 0.0605 S33: -0.4339 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 284 THROUGH 292 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.1475 37.9186 23.7901 REMARK 3 T TENSOR REMARK 3 T11: 0.1433 T22: 0.1740 REMARK 3 T33: 0.2123 T12: -0.0485 REMARK 3 T13: 0.0205 T23: -0.0603 REMARK 3 L TENSOR REMARK 3 L11: 5.0193 L22: 1.2603 REMARK 3 L33: 2.4461 L12: 0.4051 REMARK 3 L13: 3.4634 L23: 0.5317 REMARK 3 S TENSOR REMARK 3 S11: -0.1620 S12: 0.0362 S13: 0.8413 REMARK 3 S21: -0.0798 S22: -0.1354 S23: 0.0454 REMARK 3 S31: -0.4780 S32: 0.4839 S33: 0.1235 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 293 THROUGH 299 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.4612 21.6022 12.8014 REMARK 3 T TENSOR REMARK 3 T11: 0.1707 T22: 0.2087 REMARK 3 T33: 0.1590 T12: 0.0175 REMARK 3 T13: 0.0148 T23: -0.0360 REMARK 3 L TENSOR REMARK 3 L11: 8.4762 L22: 4.8520 REMARK 3 L33: 5.3003 L12: 5.9043 REMARK 3 L13: 3.0984 L23: 3.9156 REMARK 3 S TENSOR REMARK 3 S11: -0.2782 S12: 0.1672 S13: -0.5786 REMARK 3 S21: -0.0199 S22: 0.2105 S23: -0.0664 REMARK 3 S31: 0.0397 S32: -0.4117 S33: 0.0698 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 300 THROUGH 310 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.8020 22.4827 18.5149 REMARK 3 T TENSOR REMARK 3 T11: 0.1909 T22: 0.1339 REMARK 3 T33: 0.1320 T12: -0.0720 REMARK 3 T13: 0.0270 T23: -0.0273 REMARK 3 L TENSOR REMARK 3 L11: 7.3169 L22: 7.1473 REMARK 3 L33: 4.9001 L12: -4.5509 REMARK 3 L13: 2.1868 L23: 1.5005 REMARK 3 S TENSOR REMARK 3 S11: -0.0076 S12: 0.2596 S13: -0.6260 REMARK 3 S21: -0.1511 S22: 0.0950 S23: 0.1283 REMARK 3 S31: 0.7035 S32: -0.3634 S33: -0.0006 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 311 THROUGH 319 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.1559 35.8874 13.4561 REMARK 3 T TENSOR REMARK 3 T11: 0.1951 T22: 0.1746 REMARK 3 T33: 0.1963 T12: 0.0114 REMARK 3 T13: 0.0129 T23: 0.0527 REMARK 3 L TENSOR REMARK 3 L11: 3.8775 L22: 0.7560 REMARK 3 L33: 4.4239 L12: 0.3687 REMARK 3 L13: 2.4853 L23: 1.6631 REMARK 3 S TENSOR REMARK 3 S11: -0.1449 S12: 0.3608 S13: 0.3322 REMARK 3 S21: -0.0819 S22: 0.0669 S23: 0.0154 REMARK 3 S31: -0.3966 S32: 0.1169 S33: 0.0646 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 320 THROUGH 329 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.1185 33.1448 17.8903 REMARK 3 T TENSOR REMARK 3 T11: 0.1873 T22: 0.1651 REMARK 3 T33: 0.1532 T12: -0.0103 REMARK 3 T13: 0.0414 T23: 0.0508 REMARK 3 L TENSOR REMARK 3 L11: 7.0457 L22: 9.5285 REMARK 3 L33: 3.6514 L12: 0.4469 REMARK 3 L13: 1.7334 L23: 5.6241 REMARK 3 S TENSOR REMARK 3 S11: 0.0023 S12: 0.1621 S13: 0.2763 REMARK 3 S21: -0.5159 S22: 0.0784 S23: -0.1983 REMARK 3 S31: -0.2319 S32: 0.3960 S33: -0.0592 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 330 THROUGH 340 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.7788 27.0741 11.5668 REMARK 3 T TENSOR REMARK 3 T11: 0.1258 T22: 0.2002 REMARK 3 T33: 0.1302 T12: -0.0062 REMARK 3 T13: 0.0054 T23: -0.0036 REMARK 3 L TENSOR REMARK 3 L11: 5.5512 L22: 4.2107 REMARK 3 L33: 8.5294 L12: -0.6153 REMARK 3 L13: -0.8344 L23: 2.4238 REMARK 3 S TENSOR REMARK 3 S11: 0.0770 S12: 0.6255 S13: -0.3762 REMARK 3 S21: -0.1193 S22: 0.0818 S23: -0.0636 REMARK 3 S31: 0.4257 S32: 0.1351 S33: -0.1037 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4IBJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-DEC-12. REMARK 100 THE DEPOSITION ID IS D_1000076546. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793378 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36721 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.540 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.08200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.54 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.57 REMARK 200 COMPLETENESS FOR SHELL (%) : 83.1 REMARK 200 DATA REDUNDANCY IN SHELL : 5.10 REMARK 200 R MERGE FOR SHELL (I) : 0.65200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM SODIUM CITRATE, PH5.5, 15% REMARK 280 PEG3350, 10%DMSO, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.62850 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 36.32950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.17300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 36.32950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.62850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.17300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 212 REMARK 465 HIS A 213 REMARK 465 MET A 214 REMARK 465 GLY A 215 REMARK 465 LYS A 216 REMARK 465 GLY B 212 REMARK 465 HIS B 213 REMARK 465 MET B 214 REMARK 465 GLY B 215 REMARK 465 LYS B 216 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 597 O HOH B 642 1.91 REMARK 500 O HOH A 640 O HOH A 657 1.92 REMARK 500 O HOH B 566 O HOH B 625 1.96 REMARK 500 O HOH A 560 O HOH A 659 1.98 REMARK 500 O HOH B 608 O HOH B 637 2.02 REMARK 500 O HOH B 562 O HOH B 637 2.05 REMARK 500 O HOH B 611 O HOH B 637 2.06 REMARK 500 O HOH A 574 O HOH A 594 2.09 REMARK 500 O HOH B 598 O HOH B 634 2.11 REMARK 500 O HOH A 615 O HOH B 507 2.12 REMARK 500 O HOH B 609 O HOH B 629 2.15 REMARK 500 O HOH A 636 O HOH A 652 2.16 REMARK 500 OD1 ASN A 254 O HOH A 642 2.16 REMARK 500 O HOH A 617 O HOH A 649 2.16 REMARK 500 O HOH B 600 O HOH B 626 2.18 REMARK 500 O HOH A 592 O HOH A 642 2.19 REMARK 500 O HOH A 601 O HOH A 662 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 617 O HOH B 627 4556 1.88 REMARK 500 O HOH A 648 O HOH B 588 2464 2.02 REMARK 500 O HOH A 647 O HOH B 618 2564 2.11 REMARK 500 O HOH A 609 O HOH A 649 2565 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1D9 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1D9 B 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4IBK RELATED DB: PDB REMARK 900 RELATED ID: 4IBI RELATED DB: PDB REMARK 900 RELATED ID: 4IBH RELATED DB: PDB REMARK 900 RELATED ID: 4IBG RELATED DB: PDB REMARK 900 RELATED ID: 4IBF RELATED DB: PDB REMARK 900 RELATED ID: 4IBE RELATED DB: PDB REMARK 900 RELATED ID: 4IBD RELATED DB: PDB REMARK 900 RELATED ID: 4IBC RELATED DB: PDB REMARK 900 RELATED ID: 4IBB RELATED DB: PDB DBREF 4IBJ A 215 340 UNP Q05127 VP35_EBOZM 215 340 DBREF 4IBJ B 215 340 UNP Q05127 VP35_EBOZM 215 340 SEQADV 4IBJ GLY A 212 UNP Q05127 EXPRESSION TAG SEQADV 4IBJ HIS A 213 UNP Q05127 EXPRESSION TAG SEQADV 4IBJ MET A 214 UNP Q05127 EXPRESSION TAG SEQADV 4IBJ GLY B 212 UNP Q05127 EXPRESSION TAG SEQADV 4IBJ HIS B 213 UNP Q05127 EXPRESSION TAG SEQADV 4IBJ MET B 214 UNP Q05127 EXPRESSION TAG SEQRES 1 A 129 GLY HIS MET GLY LYS PRO ASP ILE SER ALA LYS ASP LEU SEQRES 2 A 129 ARG ASN ILE MET TYR ASP HIS LEU PRO GLY PHE GLY THR SEQRES 3 A 129 ALA PHE HIS GLN LEU VAL GLN VAL ILE CYS LYS LEU GLY SEQRES 4 A 129 LYS ASP SER ASN SER LEU ASP ILE ILE HIS ALA GLU PHE SEQRES 5 A 129 GLN ALA SER LEU ALA GLU GLY ASP SER PRO GLN CYS ALA SEQRES 6 A 129 LEU ILE GLN ILE THR LYS ARG VAL PRO ILE PHE GLN ASP SEQRES 7 A 129 ALA ALA PRO PRO VAL ILE HIS ILE ARG SER ARG GLY ASP SEQRES 8 A 129 ILE PRO ARG ALA CYS GLN LYS SER LEU ARG PRO VAL PRO SEQRES 9 A 129 PRO SER PRO LYS ILE ASP ARG GLY TRP VAL CYS VAL PHE SEQRES 10 A 129 GLN LEU GLN ASP GLY LYS THR LEU GLY LEU LYS ILE SEQRES 1 B 129 GLY HIS MET GLY LYS PRO ASP ILE SER ALA LYS ASP LEU SEQRES 2 B 129 ARG ASN ILE MET TYR ASP HIS LEU PRO GLY PHE GLY THR SEQRES 3 B 129 ALA PHE HIS GLN LEU VAL GLN VAL ILE CYS LYS LEU GLY SEQRES 4 B 129 LYS ASP SER ASN SER LEU ASP ILE ILE HIS ALA GLU PHE SEQRES 5 B 129 GLN ALA SER LEU ALA GLU GLY ASP SER PRO GLN CYS ALA SEQRES 6 B 129 LEU ILE GLN ILE THR LYS ARG VAL PRO ILE PHE GLN ASP SEQRES 7 B 129 ALA ALA PRO PRO VAL ILE HIS ILE ARG SER ARG GLY ASP SEQRES 8 B 129 ILE PRO ARG ALA CYS GLN LYS SER LEU ARG PRO VAL PRO SEQRES 9 B 129 PRO SER PRO LYS ILE ASP ARG GLY TRP VAL CYS VAL PHE SEQRES 10 B 129 GLN LEU GLN ASP GLY LYS THR LEU GLY LEU LYS ILE HET 1D9 A 401 76 HET 1D9 B 401 38 HETNAM 1D9 3-{(5S)-3-HYDROXY-2-OXO-4-[3-(TRIFLUOROMETHYL)BENZOYL]- HETNAM 2 1D9 5-[3-(TRIFLUOROMETHYL)PHENYL]-2,5-DIHYDRO-1H-PYRROL-1- HETNAM 3 1D9 YL}BENZOIC ACID FORMUL 3 1D9 2(C26 H15 F6 N O5) FORMUL 5 HOH *309(H2 O) HELIX 1 1 SER A 220 ASP A 230 1 11 HELIX 2 2 THR A 237 SER A 253 1 17 HELIX 3 3 SER A 255 GLY A 270 1 16 HELIX 4 4 SER A 272 VAL A 284 1 13 HELIX 5 5 PRO A 285 GLN A 288 5 4 HELIX 6 6 SER A 299 ILE A 303 5 5 HELIX 7 7 PRO A 304 LYS A 309 5 6 HELIX 8 8 LYS A 319 ARG A 322 5 4 HELIX 9 9 SER B 220 ASP B 230 1 11 HELIX 10 10 THR B 237 SER B 253 1 17 HELIX 11 11 SER B 255 GLY B 270 1 16 HELIX 12 12 SER B 272 VAL B 284 1 13 HELIX 13 13 PRO B 285 GLN B 288 5 4 HELIX 14 14 SER B 299 ILE B 303 5 5 HELIX 15 15 PRO B 304 LYS B 309 5 6 HELIX 16 16 LYS B 319 ARG B 322 5 4 SHEET 1 A 4 VAL A 294 ILE A 297 0 SHEET 2 A 4 TRP A 324 LEU A 330 1 O VAL A 327 N ILE A 295 SHEET 3 A 4 THR A 335 LYS A 339 -1 O LEU A 336 N PHE A 328 SHEET 4 A 4 LEU A 311 ARG A 312 -1 N ARG A 312 O GLY A 337 SHEET 1 B 4 VAL B 294 HIS B 296 0 SHEET 2 B 4 TRP B 324 GLN B 329 1 O VAL B 327 N ILE B 295 SHEET 3 B 4 THR B 335 LYS B 339 -1 O LEU B 336 N PHE B 328 SHEET 4 B 4 LEU B 311 ARG B 312 -1 N ARG B 312 O GLY B 337 SITE 1 AC1 16 LYS A 222 GLN A 241 GLN A 244 VAL A 245 SITE 2 AC1 16 LYS A 248 LEU A 249 LYS A 251 PRO A 293 SITE 3 AC1 16 VAL A 294 ILE A 295 ASP A 302 PRO A 304 SITE 4 AC1 16 ARG A 305 PHE A 328 HOH A 601 HIS B 296 SITE 1 AC2 13 HOH A 635 ARG B 225 GLN B 241 GLN B 244 SITE 2 AC2 13 VAL B 245 LYS B 248 LEU B 249 LYS B 251 SITE 3 AC2 13 PRO B 293 ILE B 295 ASP B 302 PRO B 304 SITE 4 AC2 13 PHE B 328 CRYST1 51.257 66.346 72.659 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019510 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015072 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013763 0.00000