HEADER TRANSCRIPTION/DNA 19-DEC-12 4IHS TITLE CRYSTAL STRUCTURE OF BENM_DBD/CATB SITE 1 DNA COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: HTH-TYPE TRANSCRIPTIONAL REGULATOR BENM; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: UNP RESIDUES 1-87; COMPND 5 SYNONYM: BEN AND CAT OPERON TRANSCRIPTIONAL REGULATOR, COMPND 6 TRANSCRIPTIONAL REGULATOR BENM DNA BINDING DOMAIN; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: CATB SITE 1 DNA; COMPND 10 CHAIN: E, G; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: CATB SITE 1 DNA - COMPLEMENT; COMPND 14 CHAIN: F, H; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ACINETOBACTER SP.; SOURCE 3 ORGANISM_TAXID: 62977; SOURCE 4 STRAIN: ADP1; SOURCE 5 GENE: ACIAD1435, BENM, BENR; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21B; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 OTHER_DETAILS: SYNTHETIC DNA PURCHASED FROM IDT; SOURCE 14 MOL_ID: 3; SOURCE 15 SYNTHETIC: YES; SOURCE 16 OTHER_DETAILS: SYNTHETIC DNA PURCHASED FROM IDT KEYWDS WHTH, HTH, TRANSCRIPTIONAL REGULATOR, CATB PROMOTER, TRANSCRIPTION- KEYWDS 2 DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.ALANAZI,C.MOMANY,E.L.NEIDLE REVDAT 5 20-SEP-23 4IHS 1 REMARK SEQADV LINK REVDAT 4 15-NOV-17 4IHS 1 REMARK REVDAT 3 15-JAN-14 4IHS 1 JRNL REVDAT 2 02-OCT-13 4IHS 1 JRNL REVDAT 1 10-JUL-13 4IHS 0 JRNL AUTH A.M.ALANAZI,E.L.NEIDLE,C.MOMANY JRNL TITL THE DNA-BINDING DOMAIN OF BENM REVEALS THE STRUCTURAL BASIS JRNL TITL 2 FOR THE RECOGNITION OF A T-N11-A SEQUENCE MOTIF BY LYSR-TYPE JRNL TITL 3 TRANSCRIPTIONAL REGULATORS. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 69 1995 2013 JRNL REFN ISSN 0907-4449 JRNL PMID 24100318 JRNL DOI 10.1107/S0907444913017320 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.H.CRAVEN,O.C.EZEZIKA,S.HADDAD,R.A.HALL,C.MOMANY,E.L.NEIDLE REMARK 1 TITL INDUCER RESPONSES OF BENM, A LYSR-TYPE TRANSCRIPTIONAL REMARK 1 TITL 2 REGULATOR FROM ACINETOBACTER BAYLYI ADP1. REMARK 1 REF MOL.MICROBIOL. V.2(4) 881 2009 REMARK 1 REFN ISSN 0950-382X REMARK 1 PMID 19400783 REMARK 1 REFERENCE 2 REMARK 1 AUTH O.C.EZEZIKA,S.HADDAD,T.J.CLARK,E.L.NEIDLE,C.MOMANY REMARK 1 TITL DISTINCT EFFECTOR-BINDING SITES ENABLE SYNERGISTIC REMARK 1 TITL 2 TRANSCRIPTIONAL ACTIVATION BY BENM, A LYSR-TYPE REGULATOR REMARK 1 REF J.MOL.BIOL. V.7(3) 616 2007 REMARK 1 REFN ISSN 0022-2836 REMARK 1 PMID 17291527 REMARK 1 REFERENCE 3 REMARK 1 AUTH O.C.EZEZIKA,S.HADDAD,E.L.NEIDLE,C.MOMANY REMARK 1 TITL OLIGOMERIZATION OF BENM, A LYSR-TYPE TRANSCRIPTIONAL REMARK 1 TITL 2 REGULATOR: STRUCTURAL BASIS FOR THE AGGREGATION OF PROTEINS REMARK 1 TITL 3 IN THIS FAMILY.R REMARK 1 REF ACTA CRYSTALLOGR.,SECT.F V.T 5) 361 2007 REMARK 1 REFN ESSN 1744-3091 REMARK 1 PMID 17565172 REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REFMAC_5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.95 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.0 REMARK 3 NUMBER OF REFLECTIONS : 30320 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.203 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1523 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.17 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1481 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 67.41 REMARK 3 BIN R VALUE (WORKING SET) : 0.2500 REMARK 3 BIN FREE R VALUE SET COUNT : 68 REMARK 3 BIN FREE R VALUE : 0.2940 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2922 REMARK 3 NUCLEIC ACID ATOMS : 2038 REMARK 3 HETEROGEN ATOMS : 15 REMARK 3 SOLVENT ATOMS : 20 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 99.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 108.1 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.85000 REMARK 3 B22 (A**2) : 0.85000 REMARK 3 B33 (A**2) : -1.70000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.433 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.273 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.192 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 24.668 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.951 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5275 ; 0.004 ; 0.016 REMARK 3 BOND LENGTHS OTHERS (A): 4131 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7927 ; 0.994 ; 1.660 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9510 ; 0.843 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 357 ; 5.336 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 145 ;35.280 ;23.586 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 557 ;17.221 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;14.370 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 841 ; 0.062 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4507 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1024 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 4 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A C REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 0 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 1452 ; 0.460 ; 0.500 REMARK 3 MEDIUM THERMAL 1 A (A**2): 1452 ; 7.740 ; 2.000 REMARK 3 REMARK 3 NCS GROUP NUMBER : 2 REMARK 3 CHAIN NAMES : B D REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 0 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 2 B (A): 1453 ; 0.500 ; 0.500 REMARK 3 MEDIUM THERMAL 2 B (A**2): 1453 ;12.580 ; 2.000 REMARK 3 REMARK 3 NCS GROUP NUMBER : 3 REMARK 3 CHAIN NAMES : E G REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 0 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 3 E (A): 795 ; 0.430 ; 0.500 REMARK 3 MEDIUM THERMAL 3 E (A**2): 795 ;11.840 ; 2.000 REMARK 3 REMARK 3 NCS GROUP NUMBER : 4 REMARK 3 CHAIN NAMES : F H REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 0 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 4 F (A): 798 ; 0.410 ; 0.500 REMARK 3 MEDIUM THERMAL 4 F (A**2): 798 ; 8.300 ; 2.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 19 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 58 REMARK 3 ORIGIN FOR THE GROUP (A): -13.9433 -9.5411 -54.4561 REMARK 3 T TENSOR REMARK 3 T11: 0.1406 T22: 0.4420 REMARK 3 T33: 0.1062 T12: -0.0065 REMARK 3 T13: -0.0290 T23: 0.0468 REMARK 3 L TENSOR REMARK 3 L11: 6.2433 L22: 5.1009 REMARK 3 L33: 2.8932 L12: 0.1317 REMARK 3 L13: 0.0368 L23: -0.5381 REMARK 3 S TENSOR REMARK 3 S11: -0.0227 S12: 0.0609 S13: -0.0446 REMARK 3 S21: -0.2798 S22: 0.1602 S23: 0.3186 REMARK 3 S31: -0.1535 S32: -0.1861 S33: -0.1375 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 59 A 89 REMARK 3 ORIGIN FOR THE GROUP (A): -5.6288 -21.7672 -43.2598 REMARK 3 T TENSOR REMARK 3 T11: 0.3896 T22: 0.8151 REMARK 3 T33: 0.6637 T12: 0.0182 REMARK 3 T13: 0.0312 T23: 0.2036 REMARK 3 L TENSOR REMARK 3 L11: 3.3964 L22: 10.7435 REMARK 3 L33: 16.4982 L12: 4.5217 REMARK 3 L13: -6.8980 L23: -10.8474 REMARK 3 S TENSOR REMARK 3 S11: -0.4673 S12: -0.3350 S13: -0.7895 REMARK 3 S21: -0.0247 S22: -0.5921 S23: -1.4099 REMARK 3 S31: 0.3759 S32: 0.0516 S33: 1.0594 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 28 REMARK 3 ORIGIN FOR THE GROUP (A): -6.1152 -8.5663 -27.7850 REMARK 3 T TENSOR REMARK 3 T11: 0.6835 T22: 0.9215 REMARK 3 T33: 0.2705 T12: -0.1595 REMARK 3 T13: -0.0395 T23: 0.0861 REMARK 3 L TENSOR REMARK 3 L11: 0.6516 L22: 8.4744 REMARK 3 L33: 13.0093 L12: 0.6713 REMARK 3 L13: -0.7806 L23: 2.3047 REMARK 3 S TENSOR REMARK 3 S11: 0.1849 S12: -0.3024 S13: 0.1918 REMARK 3 S21: 1.0544 S22: -0.2747 S23: 0.1025 REMARK 3 S31: -0.8466 S32: -0.1438 S33: 0.0898 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 29 B 43 REMARK 3 ORIGIN FOR THE GROUP (A): -14.8359 -11.8318 -26.5268 REMARK 3 T TENSOR REMARK 3 T11: 1.1102 T22: 1.3288 REMARK 3 T33: 0.6173 T12: -0.0231 REMARK 3 T13: 0.1977 T23: 0.1594 REMARK 3 L TENSOR REMARK 3 L11: 2.9825 L22: 40.7539 REMARK 3 L33: 1.9009 L12: 8.6655 REMARK 3 L13: 0.7226 L23: 7.0619 REMARK 3 S TENSOR REMARK 3 S11: -0.4726 S12: -0.0689 S13: 0.5304 REMARK 3 S21: 1.4324 S22: 0.4861 S23: 1.8930 REMARK 3 S31: 0.5216 S32: 0.0636 S33: -0.0135 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 44 B 58 REMARK 3 ORIGIN FOR THE GROUP (A): -7.9673 -18.5766 -19.2051 REMARK 3 T TENSOR REMARK 3 T11: 1.0658 T22: 1.3393 REMARK 3 T33: 0.4381 T12: -0.1261 REMARK 3 T13: -0.0497 T23: 0.4674 REMARK 3 L TENSOR REMARK 3 L11: 6.2105 L22: 21.0915 REMARK 3 L33: 5.3660 L12: -1.4778 REMARK 3 L13: -5.5977 L23: 3.7435 REMARK 3 S TENSOR REMARK 3 S11: -0.1271 S12: -1.3008 S13: -0.0738 REMARK 3 S21: 3.4439 S22: 0.2146 S23: 0.0492 REMARK 3 S31: 0.5360 S32: 0.9957 S33: -0.0875 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 59 B 87 REMARK 3 ORIGIN FOR THE GROUP (A): 0.7089 -14.8061 -39.9771 REMARK 3 T TENSOR REMARK 3 T11: 0.3730 T22: 0.7032 REMARK 3 T33: 0.4252 T12: -0.0501 REMARK 3 T13: -0.0435 T23: 0.1332 REMARK 3 L TENSOR REMARK 3 L11: 4.7933 L22: 7.5459 REMARK 3 L33: 13.2058 L12: 3.9022 REMARK 3 L13: -5.0926 L23: -8.4366 REMARK 3 S TENSOR REMARK 3 S11: -0.1618 S12: -0.5459 S13: -0.6779 REMARK 3 S21: 0.4976 S22: -0.9650 S23: -1.1894 REMARK 3 S31: -0.1721 S32: 0.8332 S33: 1.1268 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 88 B 93 REMARK 3 ORIGIN FOR THE GROUP (A): 10.2951 -8.9190 -57.5560 REMARK 3 T TENSOR REMARK 3 T11: 2.2735 T22: 2.7031 REMARK 3 T33: 1.5228 T12: -0.2927 REMARK 3 T13: 0.5043 T23: -0.4621 REMARK 3 L TENSOR REMARK 3 L11: 56.8670 L22: 7.6038 REMARK 3 L33: 26.0615 L12: 20.7685 REMARK 3 L13: 38.4876 L23: 14.0636 REMARK 3 S TENSOR REMARK 3 S11: 2.5182 S12: 0.7968 S13: -5.3087 REMARK 3 S21: 0.6350 S22: 0.7623 S23: -2.0483 REMARK 3 S31: 1.4835 S32: 0.7226 S33: -3.2805 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 43 REMARK 3 ORIGIN FOR THE GROUP (A): -0.5911 -35.8095 -42.6098 REMARK 3 T TENSOR REMARK 3 T11: 0.1888 T22: 0.6334 REMARK 3 T33: 0.8616 T12: 0.0164 REMARK 3 T13: 0.0098 T23: 0.2966 REMARK 3 L TENSOR REMARK 3 L11: 3.1412 L22: 3.8490 REMARK 3 L33: 7.5914 L12: -2.4496 REMARK 3 L13: -0.1068 L23: 0.5207 REMARK 3 S TENSOR REMARK 3 S11: 0.0234 S12: -0.0796 S13: -0.8640 REMARK 3 S21: -0.0456 S22: -0.1168 S23: -0.0981 REMARK 3 S31: 0.5714 S32: 0.4148 S33: 0.0934 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 44 C 90 REMARK 3 ORIGIN FOR THE GROUP (A): -6.4470 -28.3979 -49.1183 REMARK 3 T TENSOR REMARK 3 T11: 0.1969 T22: 0.4909 REMARK 3 T33: 0.3709 T12: -0.0642 REMARK 3 T13: 0.0307 T23: 0.0861 REMARK 3 L TENSOR REMARK 3 L11: 4.4767 L22: 5.9325 REMARK 3 L33: 4.3960 L12: -2.5137 REMARK 3 L13: -0.3203 L23: -0.0904 REMARK 3 S TENSOR REMARK 3 S11: 0.4161 S12: 0.0964 S13: -0.4614 REMARK 3 S21: -0.5563 S22: -0.3686 S23: -0.3001 REMARK 3 S31: 0.0449 S32: 0.3106 S33: -0.0475 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 1 D 43 REMARK 3 ORIGIN FOR THE GROUP (A): -25.8273 -38.3134 -41.3953 REMARK 3 T TENSOR REMARK 3 T11: 0.3404 T22: 0.7733 REMARK 3 T33: 0.8177 T12: -0.1746 REMARK 3 T13: -0.1742 T23: 0.2800 REMARK 3 L TENSOR REMARK 3 L11: 4.0653 L22: 6.6596 REMARK 3 L33: 4.0726 L12: 0.7697 REMARK 3 L13: -3.6293 L23: -2.8833 REMARK 3 S TENSOR REMARK 3 S11: -0.0775 S12: 0.0328 S13: -0.7072 REMARK 3 S21: -0.0977 S22: -0.1955 S23: 0.3402 REMARK 3 S31: 0.2473 S32: -0.1092 S33: 0.2730 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 44 D 89 REMARK 3 ORIGIN FOR THE GROUP (A): -21.9995 -31.5318 -49.7849 REMARK 3 T TENSOR REMARK 3 T11: 0.1428 T22: 0.5622 REMARK 3 T33: 0.3244 T12: -0.0707 REMARK 3 T13: -0.0898 T23: 0.1176 REMARK 3 L TENSOR REMARK 3 L11: 6.4778 L22: 6.4271 REMARK 3 L33: 2.7351 L12: -1.1518 REMARK 3 L13: -1.0214 L23: -0.3002 REMARK 3 S TENSOR REMARK 3 S11: 0.3056 S12: 0.6023 S13: -0.2126 REMARK 3 S21: -0.3977 S22: -0.1272 S23: 0.3680 REMARK 3 S31: 0.0407 S32: -0.7279 S33: -0.1784 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 1 E 5 REMARK 3 ORIGIN FOR THE GROUP (A): -9.5546 -4.9207 -7.4121 REMARK 3 T TENSOR REMARK 3 T11: 2.4767 T22: 1.7016 REMARK 3 T33: 0.7576 T12: -0.4403 REMARK 3 T13: 0.0008 T23: 0.1737 REMARK 3 L TENSOR REMARK 3 L11: 8.6426 L22: 19.6231 REMARK 3 L33: 78.8607 L12: 8.4913 REMARK 3 L13: 12.7691 L23: 38.5527 REMARK 3 S TENSOR REMARK 3 S11: 0.5522 S12: -0.0769 S13: 1.8004 REMARK 3 S21: -0.9589 S22: 0.8623 S23: -0.0072 REMARK 3 S31: -2.7991 S32: 1.8222 S33: -1.4144 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 6 E 25 REMARK 3 ORIGIN FOR THE GROUP (A): -24.4101 -1.5012 -44.3150 REMARK 3 T TENSOR REMARK 3 T11: 0.2543 T22: 0.6722 REMARK 3 T33: 0.4721 T12: 0.1147 REMARK 3 T13: 0.1054 T23: 0.0465 REMARK 3 L TENSOR REMARK 3 L11: 1.7905 L22: 3.5783 REMARK 3 L33: 7.7108 L12: 0.2867 REMARK 3 L13: 0.1281 L23: -0.7524 REMARK 3 S TENSOR REMARK 3 S11: 0.2132 S12: -0.3719 S13: 0.1129 REMARK 3 S21: 0.1874 S22: 0.2663 S23: 0.5591 REMARK 3 S31: -0.9790 S32: -0.8548 S33: -0.4795 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : F 1 F 15 REMARK 3 ORIGIN FOR THE GROUP (A): -25.9147 -2.3719 -53.0607 REMARK 3 T TENSOR REMARK 3 T11: 0.2607 T22: 0.5495 REMARK 3 T33: 0.4556 T12: 0.0940 REMARK 3 T13: -0.0265 T23: 0.1156 REMARK 3 L TENSOR REMARK 3 L11: 3.6121 L22: 2.9543 REMARK 3 L33: 5.0897 L12: 0.2519 REMARK 3 L13: 0.5287 L23: -1.0672 REMARK 3 S TENSOR REMARK 3 S11: 0.0352 S12: -0.1857 S13: 0.2430 REMARK 3 S21: 0.0265 S22: 0.5241 S23: 0.8789 REMARK 3 S31: -0.4783 S32: -0.5852 S33: -0.5593 REMARK 3 REMARK 3 TLS GROUP : 15 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : F 16 F 25 REMARK 3 ORIGIN FOR THE GROUP (A): -16.6419 -3.9894 -14.1440 REMARK 3 T TENSOR REMARK 3 T11: 1.5318 T22: 1.1884 REMARK 3 T33: 0.5339 T12: -0.1863 REMARK 3 T13: 0.2000 T23: -0.0273 REMARK 3 L TENSOR REMARK 3 L11: 4.2090 L22: 0.2076 REMARK 3 L33: 12.4448 L12: -0.2761 REMARK 3 L13: 1.0622 L23: -1.3702 REMARK 3 S TENSOR REMARK 3 S11: 0.6170 S12: -0.4792 S13: -0.4457 REMARK 3 S21: 0.2995 S22: -0.0255 S23: 0.1960 REMARK 3 S31: -1.1419 S32: -0.5804 S33: -0.5915 REMARK 3 REMARK 3 TLS GROUP : 16 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : G 1 G 19 REMARK 3 ORIGIN FOR THE GROUP (A): -21.9494 -45.6653 -30.8347 REMARK 3 T TENSOR REMARK 3 T11: 0.3035 T22: 0.8240 REMARK 3 T33: 0.8348 T12: -0.0723 REMARK 3 T13: 0.0891 T23: 0.4557 REMARK 3 L TENSOR REMARK 3 L11: 7.0694 L22: 1.6901 REMARK 3 L33: 0.9377 L12: 0.1124 REMARK 3 L13: -0.1298 L23: -0.0445 REMARK 3 S TENSOR REMARK 3 S11: -0.2971 S12: -1.1534 S13: -1.2041 REMARK 3 S21: 0.3217 S22: 0.0305 S23: -0.0337 REMARK 3 S31: 0.3669 S32: -0.0830 S33: 0.2666 REMARK 3 REMARK 3 TLS GROUP : 17 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : G 20 G 25 REMARK 3 ORIGIN FOR THE GROUP (A): 17.9516 -44.1026 -38.6351 REMARK 3 T TENSOR REMARK 3 T11: 0.4900 T22: 1.1300 REMARK 3 T33: 1.1679 T12: 0.1944 REMARK 3 T13: -0.1661 T23: 0.2070 REMARK 3 L TENSOR REMARK 3 L11: 16.2152 L22: 11.8041 REMARK 3 L33: 8.0044 L12: -1.3884 REMARK 3 L13: -3.9655 L23: -5.9835 REMARK 3 S TENSOR REMARK 3 S11: -0.7687 S12: -0.1526 S13: -0.8560 REMARK 3 S21: -0.8457 S22: -0.0159 S23: -0.9403 REMARK 3 S31: 1.1363 S32: 0.6004 S33: 0.7846 REMARK 3 REMARK 3 TLS GROUP : 18 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 1 H 6 REMARK 3 ORIGIN FOR THE GROUP (A): 16.9490 -39.0030 -36.9206 REMARK 3 T TENSOR REMARK 3 T11: 0.2375 T22: 1.4326 REMARK 3 T33: 1.2019 T12: 0.1750 REMARK 3 T13: 0.0793 T23: 0.3114 REMARK 3 L TENSOR REMARK 3 L11: 58.4389 L22: 9.4856 REMARK 3 L33: 16.8427 L12: 13.8205 REMARK 3 L13: 31.0955 L23: 5.9988 REMARK 3 S TENSOR REMARK 3 S11: 0.0595 S12: -1.5538 S13: -0.5338 REMARK 3 S21: 0.8583 S22: 0.2258 S23: -0.1955 REMARK 3 S31: -0.1637 S32: -0.9366 S33: -0.2853 REMARK 3 REMARK 3 TLS GROUP : 19 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 7 H 25 REMARK 3 ORIGIN FOR THE GROUP (A): -20.9645 -46.1753 -30.6570 REMARK 3 T TENSOR REMARK 3 T11: 0.3500 T22: 0.8569 REMARK 3 T33: 0.9762 T12: -0.0568 REMARK 3 T13: 0.0652 T23: 0.4784 REMARK 3 L TENSOR REMARK 3 L11: 9.4101 L22: 1.4931 REMARK 3 L33: 0.9557 L12: -0.2279 REMARK 3 L13: -1.0016 L23: 0.1660 REMARK 3 S TENSOR REMARK 3 S11: -0.3478 S12: -0.8209 S13: -0.8541 REMARK 3 S21: 0.3136 S22: 0.0141 S23: 0.0106 REMARK 3 S31: 0.4864 S32: -0.1659 S33: 0.3337 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 4IHS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-JAN-13. REMARK 100 THE DEPOSITION ID IS D_1000076768. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JUL-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.99999 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30569 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100 REMARK 200 RESOLUTION RANGE LOW (A) : 200.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.7 REMARK 200 DATA REDUNDANCY : 8.200 REMARK 200 R MERGE (I) : 0.11400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 72.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : 0.39900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLECULAR REPLACEMENT REMARK 200 STARTING MODEL: PDB ENTRY 3M1E REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 78.86 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.82 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: EQUAL VOLUMES OF PRECIPITANT, PROTEIN REMARK 280 SOLUTION AND DNA. PRECIPITANT: SODIUM MALONATE CRYSTAL SCREEN C4- REMARK 280 2.4 M SODIUM MALONATE PH 6.0. PROTEIN: 20 MM TRIS BASE (PH 8.0), REMARK 280 0.5 M NACL, 10% GLYCEROL, 150 MM IMIDAZOLE, 10 MM BME, REMARK 280 MICROBATCH UNDER OIL, TEMPERATURE 288K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 78.24650 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 78.24650 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 70.76250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 78.24650 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 78.24650 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 70.76250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 78.24650 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 78.24650 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 70.76250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 78.24650 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 78.24650 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 70.76250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 20370 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -130.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 203 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 90 REMARK 465 HIS A 91 REMARK 465 HIS A 92 REMARK 465 HIS A 93 REMARK 465 HIS A 94 REMARK 465 HIS B 94 REMARK 465 HIS C 91 REMARK 465 HIS C 92 REMARK 465 HIS C 93 REMARK 465 HIS C 94 REMARK 465 HIS D 90 REMARK 465 HIS D 91 REMARK 465 HIS D 92 REMARK 465 HIS D 93 REMARK 465 HIS D 94 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER C 33 OP2 DA H 6 1.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 16 29.70 44.16 REMARK 500 SER A 52 84.65 54.60 REMARK 500 SER B 17 128.48 -172.51 REMARK 500 PRO B 54 87.23 -53.61 REMARK 500 SER C 52 106.17 -169.74 REMARK 500 ARG D 53 -132.49 -82.21 REMARK 500 PRO D 54 65.61 1.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA C 102 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 MLI A 101 O8 REMARK 620 2 ASP C 76 OD1 140.0 REMARK 620 3 MLI C 101 O8 83.1 114.8 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MLI A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MLI C 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA C 102 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3M1E RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF BENM DNA BINDING DOMAIN REMARK 900 RELATED ID: 4IHT RELATED DB: PDB DBREF 4IHS A 1 87 UNP O68014 BENM_ACIAD 1 87 DBREF 4IHS B 1 87 UNP O68014 BENM_ACIAD 1 87 DBREF 4IHS C 1 87 UNP O68014 BENM_ACIAD 1 87 DBREF 4IHS D 1 87 UNP O68014 BENM_ACIAD 1 87 DBREF 4IHS E 1 25 PDB 4IHS 4IHS 1 25 DBREF 4IHS G 1 25 PDB 4IHS 4IHS 1 25 DBREF 4IHS F 1 25 PDB 4IHS 4IHS 1 25 DBREF 4IHS H 1 25 PDB 4IHS 4IHS 1 25 SEQADV 4IHS GLY A 88 UNP O68014 EXPRESSION TAG SEQADV 4IHS HIS A 89 UNP O68014 EXPRESSION TAG SEQADV 4IHS HIS A 90 UNP O68014 EXPRESSION TAG SEQADV 4IHS HIS A 91 UNP O68014 EXPRESSION TAG SEQADV 4IHS HIS A 92 UNP O68014 EXPRESSION TAG SEQADV 4IHS HIS A 93 UNP O68014 EXPRESSION TAG SEQADV 4IHS HIS A 94 UNP O68014 EXPRESSION TAG SEQADV 4IHS GLY B 88 UNP O68014 EXPRESSION TAG SEQADV 4IHS HIS B 89 UNP O68014 EXPRESSION TAG SEQADV 4IHS HIS B 90 UNP O68014 EXPRESSION TAG SEQADV 4IHS HIS B 91 UNP O68014 EXPRESSION TAG SEQADV 4IHS HIS B 92 UNP O68014 EXPRESSION TAG SEQADV 4IHS HIS B 93 UNP O68014 EXPRESSION TAG SEQADV 4IHS HIS B 94 UNP O68014 EXPRESSION TAG SEQADV 4IHS GLY C 88 UNP O68014 EXPRESSION TAG SEQADV 4IHS HIS C 89 UNP O68014 EXPRESSION TAG SEQADV 4IHS HIS C 90 UNP O68014 EXPRESSION TAG SEQADV 4IHS HIS C 91 UNP O68014 EXPRESSION TAG SEQADV 4IHS HIS C 92 UNP O68014 EXPRESSION TAG SEQADV 4IHS HIS C 93 UNP O68014 EXPRESSION TAG SEQADV 4IHS HIS C 94 UNP O68014 EXPRESSION TAG SEQADV 4IHS GLY D 88 UNP O68014 EXPRESSION TAG SEQADV 4IHS HIS D 89 UNP O68014 EXPRESSION TAG SEQADV 4IHS HIS D 90 UNP O68014 EXPRESSION TAG SEQADV 4IHS HIS D 91 UNP O68014 EXPRESSION TAG SEQADV 4IHS HIS D 92 UNP O68014 EXPRESSION TAG SEQADV 4IHS HIS D 93 UNP O68014 EXPRESSION TAG SEQADV 4IHS HIS D 94 UNP O68014 EXPRESSION TAG SEQRES 1 A 94 MET GLU LEU ARG HIS LEU ARG TYR PHE VAL ALA VAL VAL SEQRES 2 A 94 GLU GLU GLN SER PHE THR LYS ALA ALA ASP LYS LEU CYS SEQRES 3 A 94 ILE ALA GLN PRO PRO LEU SER ARG GLN ILE GLN ASN LEU SEQRES 4 A 94 GLU GLU GLU LEU GLY ILE GLN LEU LEU GLU ARG GLY SER SEQRES 5 A 94 ARG PRO VAL LYS THR THR PRO GLU GLY HIS PHE PHE TYR SEQRES 6 A 94 GLN TYR ALA ILE LYS LEU LEU SER ASN VAL ASP GLN MET SEQRES 7 A 94 VAL SER MET THR LYS ARG ILE ALA SER GLY HIS HIS HIS SEQRES 8 A 94 HIS HIS HIS SEQRES 1 B 94 MET GLU LEU ARG HIS LEU ARG TYR PHE VAL ALA VAL VAL SEQRES 2 B 94 GLU GLU GLN SER PHE THR LYS ALA ALA ASP LYS LEU CYS SEQRES 3 B 94 ILE ALA GLN PRO PRO LEU SER ARG GLN ILE GLN ASN LEU SEQRES 4 B 94 GLU GLU GLU LEU GLY ILE GLN LEU LEU GLU ARG GLY SER SEQRES 5 B 94 ARG PRO VAL LYS THR THR PRO GLU GLY HIS PHE PHE TYR SEQRES 6 B 94 GLN TYR ALA ILE LYS LEU LEU SER ASN VAL ASP GLN MET SEQRES 7 B 94 VAL SER MET THR LYS ARG ILE ALA SER GLY HIS HIS HIS SEQRES 8 B 94 HIS HIS HIS SEQRES 1 C 94 MET GLU LEU ARG HIS LEU ARG TYR PHE VAL ALA VAL VAL SEQRES 2 C 94 GLU GLU GLN SER PHE THR LYS ALA ALA ASP LYS LEU CYS SEQRES 3 C 94 ILE ALA GLN PRO PRO LEU SER ARG GLN ILE GLN ASN LEU SEQRES 4 C 94 GLU GLU GLU LEU GLY ILE GLN LEU LEU GLU ARG GLY SER SEQRES 5 C 94 ARG PRO VAL LYS THR THR PRO GLU GLY HIS PHE PHE TYR SEQRES 6 C 94 GLN TYR ALA ILE LYS LEU LEU SER ASN VAL ASP GLN MET SEQRES 7 C 94 VAL SER MET THR LYS ARG ILE ALA SER GLY HIS HIS HIS SEQRES 8 C 94 HIS HIS HIS SEQRES 1 D 94 MET GLU LEU ARG HIS LEU ARG TYR PHE VAL ALA VAL VAL SEQRES 2 D 94 GLU GLU GLN SER PHE THR LYS ALA ALA ASP LYS LEU CYS SEQRES 3 D 94 ILE ALA GLN PRO PRO LEU SER ARG GLN ILE GLN ASN LEU SEQRES 4 D 94 GLU GLU GLU LEU GLY ILE GLN LEU LEU GLU ARG GLY SER SEQRES 5 D 94 ARG PRO VAL LYS THR THR PRO GLU GLY HIS PHE PHE TYR SEQRES 6 D 94 GLN TYR ALA ILE LYS LEU LEU SER ASN VAL ASP GLN MET SEQRES 7 D 94 VAL SER MET THR LYS ARG ILE ALA SER GLY HIS HIS HIS SEQRES 8 D 94 HIS HIS HIS SEQRES 1 E 25 DT DT DT DA DT DA DT DA DC DC DT DT DT SEQRES 2 E 25 DT DT DA DG DT DA DT DG DC DA DA DA SEQRES 1 F 25 DT DT DT DG DC DA DT DA DC DT DA DA DA SEQRES 2 F 25 DA DA DG DG DT DA DT DA DT DA DA DA SEQRES 1 G 25 DT DT DT DA DT DA DT DA DC DC DT DT DT SEQRES 2 G 25 DT DT DA DG DT DA DT DG DC DA DA DA SEQRES 1 H 25 DT DT DT DG DC DA DT DA DC DT DA DA DA SEQRES 2 H 25 DA DA DG DG DT DA DT DA DT DA DA DA HET MLI A 101 9 HET MLI C 101 9 HET NA C 102 1 HETNAM MLI MALONATE ION HETNAM NA SODIUM ION FORMUL 9 MLI 2(C3 H2 O4 2-) FORMUL 11 NA NA 1+ FORMUL 12 HOH *20(H2 O) HELIX 1 1 GLU A 2 GLU A 15 1 14 HELIX 2 2 SER A 17 CYS A 26 1 10 HELIX 3 3 ALA A 28 GLY A 44 1 17 HELIX 4 4 THR A 58 SER A 87 1 30 HELIX 5 5 GLU B 2 GLN B 16 1 15 HELIX 6 6 SER B 17 LEU B 25 1 9 HELIX 7 7 ALA B 28 GLY B 44 1 17 HELIX 8 8 THR B 58 SER B 87 1 30 HELIX 9 9 GLU C 2 GLN C 16 1 15 HELIX 10 10 SER C 17 CYS C 26 1 10 HELIX 11 11 ALA C 28 GLY C 44 1 17 HELIX 12 12 THR C 58 SER C 87 1 30 HELIX 13 13 GLU D 2 GLN D 16 1 15 HELIX 14 14 SER D 17 LEU D 25 1 9 HELIX 15 15 ALA D 28 GLY D 44 1 17 HELIX 16 16 THR D 58 SER D 87 1 30 SHEET 1 A 2 LEU A 48 GLU A 49 0 SHEET 2 A 2 LYS A 56 THR A 57 -1 O LYS A 56 N GLU A 49 SHEET 1 B 2 LEU B 48 GLU B 49 0 SHEET 2 B 2 LYS B 56 THR B 57 -1 O LYS B 56 N GLU B 49 SHEET 1 C 2 LEU C 48 GLU C 49 0 SHEET 2 C 2 LYS C 56 THR C 57 -1 O LYS C 56 N GLU C 49 LINK O8 MLI A 101 NA NA C 102 1555 1555 2.61 LINK OD1 ASP C 76 NA NA C 102 1555 1555 2.71 LINK O8 MLI C 101 NA NA C 102 1555 1555 2.66 CISPEP 1 GLY A 51 SER A 52 0 -18.56 CISPEP 2 ARG A 53 PRO A 54 0 1.18 CISPEP 3 ARG C 53 PRO C 54 0 -1.99 SITE 1 AC1 9 ASP A 76 VAL A 79 SER A 80 HOH A 205 SITE 2 AC1 9 ARG C 7 MLI C 101 NA C 102 MET D 1 SITE 3 AC1 9 GLU D 42 SITE 1 AC2 9 ARG A 7 MLI A 101 HOH A 205 MET B 1 SITE 2 AC2 9 ASP C 76 SER C 80 LYS C 83 NA C 102 SITE 3 AC2 9 HOH C 203 SITE 1 AC3 3 MLI A 101 ASP C 76 MLI C 101 CRYST1 156.493 156.493 141.525 90.00 90.00 90.00 P 42 21 2 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006390 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006390 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007066 0.00000