HEADER MEMBRANE PROTEIN 20-DEC-12 4IIL TITLE CRYSTAL STRUCTURE OF RFUA (TP0298) OF T. PALLIDUM BOUND TO RIBOFLAVIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: MEMBRANE LIPOPROTEIN TPN38(B); COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TREPONEMA PALLIDUM SUBSP. PALLIDUM; SOURCE 3 ORGANISM_TAXID: 243276; SOURCE 4 STRAIN: NICHOLS; SOURCE 5 GENE: TP0298, TPN38, TP_0298; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 AI; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PIVEX2.4D KEYWDS PERIPLASMIC-BINDING PROTEIN, RIBOFLAVIN TRANSPORT, MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.A.BRAUTIGAM,R.K.DEKA,M.V.NORGARD REVDAT 4 28-FEB-24 4IIL 1 REMARK SEQADV LINK REVDAT 3 15-NOV-17 4IIL 1 REMARK REVDAT 2 17-APR-13 4IIL 1 JRNL REVDAT 1 27-FEB-13 4IIL 0 JRNL AUTH R.K.DEKA,C.A.BRAUTIGAM,B.A.BIDDY,W.Z.LIU,M.V.NORGARD JRNL TITL EVIDENCE FOR AN ABC-TYPE RIBOFLAVIN TRANSPORTER SYSTEM IN JRNL TITL 2 PATHOGENIC SPIROCHETES. JRNL REF MBIO V. 4 00615 2013 JRNL REFN ESSN 2150-7511 JRNL PMID 23404400 JRNL DOI 10.1128/MBIO.00615-12 REMARK 2 REMARK 2 RESOLUTION. 1.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8_1069 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.29 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 73351 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.122 REMARK 3 R VALUE (WORKING SET) : 0.121 REMARK 3 FREE R VALUE : 0.153 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 3698 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 26.2940 - 3.8455 0.98 2808 160 0.1537 0.1604 REMARK 3 2 3.8455 - 3.0537 1.00 2762 145 0.1342 0.1545 REMARK 3 3 3.0537 - 2.6682 1.00 2724 150 0.1341 0.1543 REMARK 3 4 2.6682 - 2.4244 1.00 2708 152 0.1253 0.1481 REMARK 3 5 2.4244 - 2.2507 1.00 2687 160 0.1142 0.1320 REMARK 3 6 2.2507 - 2.1181 1.00 2711 142 0.1008 0.1350 REMARK 3 7 2.1181 - 2.0121 1.00 2711 124 0.1000 0.1456 REMARK 3 8 2.0121 - 1.9245 1.00 2704 136 0.1018 0.1427 REMARK 3 9 1.9245 - 1.8504 1.00 2677 141 0.1012 0.1442 REMARK 3 10 1.8504 - 1.7866 1.00 2657 163 0.1001 0.1527 REMARK 3 11 1.7866 - 1.7307 1.00 2678 146 0.0936 0.1319 REMARK 3 12 1.7307 - 1.6813 1.00 2696 150 0.0936 0.1694 REMARK 3 13 1.6813 - 1.6370 1.00 2646 167 0.0929 0.1342 REMARK 3 14 1.6370 - 1.5971 1.00 2703 126 0.0905 0.1399 REMARK 3 15 1.5971 - 1.5608 1.00 2677 143 0.0909 0.1411 REMARK 3 16 1.5608 - 1.5276 1.00 2671 138 0.0906 0.1469 REMARK 3 17 1.5276 - 1.4970 1.00 2679 132 0.0940 0.1365 REMARK 3 18 1.4970 - 1.4688 1.00 2671 136 0.1138 0.1565 REMARK 3 19 1.4688 - 1.4425 1.00 2671 126 0.1141 0.1534 REMARK 3 20 1.4425 - 1.4181 1.00 2713 116 0.1175 0.1678 REMARK 3 21 1.4181 - 1.3952 1.00 2675 136 0.1210 0.1841 REMARK 3 22 1.3952 - 1.3738 1.00 2654 139 0.1245 0.1741 REMARK 3 23 1.3738 - 1.3535 1.00 2676 141 0.1290 0.1838 REMARK 3 24 1.3535 - 1.3345 1.00 2647 153 0.1455 0.2062 REMARK 3 25 1.3345 - 1.3165 0.99 2635 157 0.1810 0.2234 REMARK 3 26 1.3165 - 1.3000 0.91 2412 119 0.2334 0.2804 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.110 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 12.930 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.38 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2754 REMARK 3 ANGLE : 1.295 3772 REMARK 3 CHIRALITY : 0.075 403 REMARK 3 PLANARITY : 0.007 501 REMARK 3 DIHEDRAL : 12.757 1019 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4IIL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-JAN-13. REMARK 100 THE DEPOSITION ID IS D_1000076797. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUN-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97926 REMARK 200 MONOCHROMATOR : SI111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 73370 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 5.800 REMARK 200 R MERGE (I) : 0.05400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.32 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.30 REMARK 200 R MERGE FOR SHELL (I) : 0.61400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.55 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M KSCN, 20% PEG3350, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 36.44050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 36.44050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 37.97750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 53.89500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 37.97750 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 53.89500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 36.44050 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 37.97750 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 53.89500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 36.44050 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 37.97750 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 53.89500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 641 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -21 REMARK 465 SER A -20 REMARK 465 GLY A -19 REMARK 465 SER A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 SER A -11 REMARK 465 SER A -10 REMARK 465 GLY A -9 REMARK 465 ILE A -8 REMARK 465 GLU A -7 REMARK 465 GLY A -6 REMARK 465 ARG A -5 REMARK 465 GLY A -4 REMARK 465 ARG A -3 REMARK 465 LEU A -2 REMARK 465 ILE A -1 REMARK 465 LYS A 0 REMARK 465 HIS A 1 REMARK 465 ARG A 2 REMARK 465 PRO A 3 REMARK 465 ALA A 4 REMARK 465 VAL A 5 REMARK 465 GLN A 6 REMARK 465 ASP A 7 REMARK 465 GLU A 8 REMARK 465 VAL A 323 REMARK 465 ARG A 324 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 9 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 ARG A 12 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 82 149.66 109.99 REMARK 500 LYS A 147 61.40 -119.87 REMARK 500 CYS A 214 30.28 -143.24 REMARK 500 ASP A 236 -52.29 84.95 REMARK 500 ALA A 243 80.04 -156.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 402 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 136 O REMARK 620 2 SER A 136 OG 76.7 REMARK 620 3 ASN A 144 O 80.1 156.6 REMARK 620 4 ASN A 144 OD1 144.0 134.0 67.1 REMARK 620 5 ASP A 146 O 109.1 101.5 88.9 85.5 REMARK 620 6 ASP A 208 OD2 90.1 82.3 94.8 78.7 160.9 REMARK 620 7 HOH A 503 O 152.6 75.9 127.3 61.4 76.9 86.0 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 403 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 136 O REMARK 620 2 SER A 138 O 95.1 REMARK 620 3 ASN A 144 O 71.7 130.0 REMARK 620 4 HOH A 532 O 72.6 147.6 75.5 REMARK 620 5 HOH A 781 O 133.8 76.9 79.2 133.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 404 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 161 OG1 REMARK 620 2 HOH A 630 O 75.7 REMARK 620 3 HOH A 690 O 142.0 112.9 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE RBF A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 406 DBREF 4IIL A 2 324 UNP Q56328 TPN38_TREPA 21 343 SEQADV 4IIL MET A -21 UNP Q56328 EXPRESSION TAG SEQADV 4IIL SER A -20 UNP Q56328 EXPRESSION TAG SEQADV 4IIL GLY A -19 UNP Q56328 EXPRESSION TAG SEQADV 4IIL SER A -18 UNP Q56328 EXPRESSION TAG SEQADV 4IIL HIS A -17 UNP Q56328 EXPRESSION TAG SEQADV 4IIL HIS A -16 UNP Q56328 EXPRESSION TAG SEQADV 4IIL HIS A -15 UNP Q56328 EXPRESSION TAG SEQADV 4IIL HIS A -14 UNP Q56328 EXPRESSION TAG SEQADV 4IIL HIS A -13 UNP Q56328 EXPRESSION TAG SEQADV 4IIL HIS A -12 UNP Q56328 EXPRESSION TAG SEQADV 4IIL SER A -11 UNP Q56328 EXPRESSION TAG SEQADV 4IIL SER A -10 UNP Q56328 EXPRESSION TAG SEQADV 4IIL GLY A -9 UNP Q56328 EXPRESSION TAG SEQADV 4IIL ILE A -8 UNP Q56328 EXPRESSION TAG SEQADV 4IIL GLU A -7 UNP Q56328 EXPRESSION TAG SEQADV 4IIL GLY A -6 UNP Q56328 EXPRESSION TAG SEQADV 4IIL ARG A -5 UNP Q56328 EXPRESSION TAG SEQADV 4IIL GLY A -4 UNP Q56328 EXPRESSION TAG SEQADV 4IIL ARG A -3 UNP Q56328 EXPRESSION TAG SEQADV 4IIL LEU A -2 UNP Q56328 EXPRESSION TAG SEQADV 4IIL ILE A -1 UNP Q56328 EXPRESSION TAG SEQADV 4IIL LYS A 0 UNP Q56328 EXPRESSION TAG SEQADV 4IIL HIS A 1 UNP Q56328 EXPRESSION TAG SEQRES 1 A 346 MET SER GLY SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 346 ILE GLU GLY ARG GLY ARG LEU ILE LYS HIS ARG PRO ALA SEQRES 3 A 346 VAL GLN ASP GLU ARG ALA VAL ARG ILE ALA VAL PHE VAL SEQRES 4 A 346 PRO GLY PHE ARG HIS ASP SER PRO VAL TYR ALA MET LEU SEQRES 5 A 346 CYS ASP GLY VAL GLU ARG ALA VAL THR GLN GLU ARG ALA SEQRES 6 A 346 THR GLY ARG SER ILE GLY LEU ASP ILE ILE GLU ALA GLY SEQRES 7 A 346 PRO ASN GLN ALA LEU TRP ARG GLU LYS LEU ALA HIS LEU SEQRES 8 A 346 ALA ALA GLU GLN ARG TYR ARG LEU ILE VAL SER SER ASN SEQRES 9 A 346 PRO ALA LEU PRO HIS VAL LEU GLU PRO ILE LEU ARG GLN SEQRES 10 A 346 PHE PRO LEU GLN ARG PHE LEU VAL LEU ASP ALA TYR ALA SEQRES 11 A 346 PRO GLN GLU HIS SER LEU ILE THR PHE ARG TYR ASN GLN SEQRES 12 A 346 TRP GLU GLN ALA TYR LEU ALA GLY HIS LEU SER ALA LEU SEQRES 13 A 346 VAL SER ALA SER ALA MET ARG PHE ALA ASN ALA ASP LYS SEQRES 14 A 346 LYS ILE GLY LEU ILE ALA GLY GLN SER TYR PRO VAL MET SEQRES 15 A 346 THR GLN THR ILE ILE PRO ALA PHE LEU ALA GLY ALA ARG SEQRES 16 A 346 ALA VAL ASP PRO ALA PHE GLU VAL ASP VAL ARG VAL VAL SEQRES 17 A 346 GLY ASN TRP TYR ASP ALA ALA LYS SER ALA ASP LEU ALA SEQRES 18 A 346 ARG ILE LEU PHE HIS GLU GLY VAL ASP VAL MET MET PRO SEQRES 19 A 346 ILE CYS GLY GLY ALA ASN GLN GLY VAL LEU ALA ALA ALA SEQRES 20 A 346 ARG GLU LEU GLY PHE TYR VAL SER TRP PHE ASP ASP ASN SEQRES 21 A 346 GLY TYR ALA ARG ALA PRO GLY TYR VAL VAL GLY SER SER SEQRES 22 A 346 VAL MET GLU GLN GLU ARG LEU ALA TYR GLU GLN THR LEU SEQRES 23 A 346 ARG CYS ILE ARG GLY GLU LEU PRO SER ALA GLY ALA TRP SEQRES 24 A 346 THR LEU GLY VAL LYS ASP GLY TYR VAL ARG PHE ILE GLU SEQRES 25 A 346 GLU ASP PRO LEU TYR LEU GLN THR VAL PRO GLU PRO ILE SEQRES 26 A 346 ARG VAL ARG GLN SER ALA LEU LEU ARG ARG ILE GLN SER SEQRES 27 A 346 GLY GLU LEU THR LEU PRO VAL ARG HET RBF A 401 47 HET NA A 402 1 HET NA A 403 1 HET K A 404 1 HET EDO A 405 10 HET EDO A 406 10 HETNAM RBF RIBOFLAVIN HETNAM NA SODIUM ION HETNAM K POTASSIUM ION HETNAM EDO 1,2-ETHANEDIOL HETSYN RBF RIBOFLAVINE; VITAMIN B2 HETSYN EDO ETHYLENE GLYCOL FORMUL 2 RBF C17 H20 N4 O6 FORMUL 3 NA 2(NA 1+) FORMUL 5 K K 1+ FORMUL 6 EDO 2(C2 H6 O2) FORMUL 8 HOH *350(H2 O) HELIX 1 1 SER A 24 ALA A 43 1 20 HELIX 2 2 ASN A 58 ALA A 60 5 3 HELIX 3 3 LEU A 61 GLU A 72 1 12 HELIX 4 4 ALA A 84 PHE A 96 1 13 HELIX 5 5 ASN A 120 SER A 138 1 19 HELIX 6 6 TYR A 157 THR A 163 1 7 HELIX 7 7 THR A 163 ASP A 176 1 14 HELIX 8 8 ASP A 191 GLY A 206 1 16 HELIX 9 9 CYS A 214 GLY A 216 5 3 HELIX 10 10 ALA A 217 GLY A 229 1 13 HELIX 11 11 GLY A 239 ALA A 243 5 5 HELIX 12 12 GLU A 254 ARG A 268 1 15 HELIX 13 13 GLY A 280 GLY A 284 5 5 HELIX 14 14 ASP A 292 VAL A 299 1 8 HELIX 15 15 PRO A 300 GLY A 317 1 18 SHEET 1 A 6 ILE A 48 GLU A 54 0 SHEET 2 A 6 VAL A 11 VAL A 17 1 N VAL A 17 O ILE A 53 SHEET 3 A 6 LEU A 77 SER A 81 1 O VAL A 79 N PHE A 16 SHEET 4 A 6 PHE A 101 LEU A 104 1 O LEU A 102 N SER A 80 SHEET 5 A 6 LEU A 114 TYR A 119 1 O ILE A 115 N VAL A 103 SHEET 6 A 6 GLY A 275 LEU A 279 1 O TRP A 277 N ARG A 118 SHEET 1 B 6 GLU A 180 VAL A 185 0 SHEET 2 B 6 LYS A 148 ALA A 153 1 N ALA A 153 O ARG A 184 SHEET 3 B 6 VAL A 209 ILE A 213 1 O ILE A 213 N ILE A 152 SHEET 4 B 6 TYR A 231 ASP A 236 1 O TYR A 231 N MET A 210 SHEET 5 B 6 VAL A 247 MET A 253 1 O GLY A 249 N TRP A 234 SHEET 6 B 6 VAL A 286 PHE A 288 -1 O ARG A 287 N VAL A 252 LINK O SER A 136 NA NA A 402 1555 1555 2.49 LINK OG SER A 136 NA NA A 402 1555 1555 2.53 LINK O SER A 136 NA NA A 403 1555 1555 2.81 LINK O SER A 138 NA NA A 403 1555 1555 2.70 LINK O ASN A 144 NA NA A 402 1555 1555 2.46 LINK OD1 ASN A 144 NA NA A 402 1555 1555 3.02 LINK O ASN A 144 NA NA A 403 1555 1555 2.63 LINK O ASP A 146 NA NA A 402 1555 1555 2.40 LINK OG1ATHR A 161 K K A 404 1555 1555 2.59 LINK OD2 ASP A 208 NA NA A 402 1555 1555 2.37 LINK NA NA A 402 O HOH A 503 1555 1555 2.56 LINK NA NA A 403 O HOH A 532 1555 1555 2.96 LINK NA NA A 403 O HOH A 781 1555 1555 3.08 LINK K K A 404 O HOH A 630 1555 1555 2.87 LINK K K A 404 O HOH A 690 1555 1555 2.60 SITE 1 AC1 17 SER A 24 VAL A 26 TYR A 27 ASN A 82 SITE 2 AC1 17 ASP A 105 GLN A 121 TYR A 157 TRP A 189 SITE 3 AC1 17 ILE A 213 GLY A 215 ASP A 236 MET A 253 SITE 4 AC1 17 HOH A 510 HOH A 522 HOH A 523 HOH A 525 SITE 5 AC1 17 HOH A 555 SITE 1 AC2 5 SER A 136 ASN A 144 ASP A 146 ASP A 208 SITE 2 AC2 5 HOH A 503 SITE 1 AC3 6 SER A 136 ALA A 137 SER A 138 ASN A 144 SITE 2 AC3 6 HOH A 532 HOH A 781 SITE 1 AC4 5 THR A 161 GLN A 162 HOH A 528 HOH A 630 SITE 2 AC4 5 HOH A 690 SITE 1 AC5 4 GLU A 254 ARG A 287 HOH A 561 HOH A 583 SITE 1 AC6 7 GLY A 275 ALA A 276 TRP A 277 LYS A 282 SITE 2 AC6 7 THR A 320 HOH A 658 HOH A 720 CRYST1 75.955 107.790 72.881 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013166 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009277 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013721 0.00000