data_4IJ0 # _entry.id 4IJ0 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.388 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4IJ0 pdb_00004ij0 10.2210/pdb4ij0/pdb NDB NA2177 ? ? RCSB RCSB076812 ? ? WWPDB D_1000076812 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-05-08 2 'Structure model' 1 1 2014-03-19 3 'Structure model' 1 2 2024-03-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_struct_conn_angle 5 3 'Structure model' struct_conn 6 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 4 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 6 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 7 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 8 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 9 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 10 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 11 3 'Structure model' '_pdbx_struct_conn_angle.value' 12 3 'Structure model' '_struct_conn.pdbx_dist_value' 13 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 14 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 15 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 16 3 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 17 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 18 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 19 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 20 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 21 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.entry_id 4IJ0 _pdbx_database_status.status_code REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.recvd_initial_deposition_date 2012-12-20 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 4ITD _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Zhang, F.' 1 'Suzuki, K.' 2 'Tsunoda, M.' 3 'Wilkinson, O.' 4 'Millington, C.L.' 5 'Williams, D.M.' 6 'Morishita, E.C.' 7 'Takenaka, A.' 8 # _citation.id primary _citation.title ;Structures of DNA duplexes containing O6-carboxymethylguanine, a lesion associated with gastrointestinal cancer, reveal a mechanism for inducing pyrimidine transition mutations ; _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_volume 41 _citation.page_first 5524 _citation.page_last 5532 _citation.year 2013 _citation.journal_id_ASTM NARHAD _citation.country UK _citation.journal_id_ISSN 0305-1048 _citation.journal_id_CSD 0389 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23580550 _citation.pdbx_database_id_DOI 10.1093/nar/gkt198 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Zhang, F.' 1 ? primary 'Tsunoda, M.' 2 ? primary 'Suzuki, K.' 3 ? primary 'Kikuchi, Y.' 4 ? primary 'Wilkinson, O.' 5 ? primary 'Millington, C.L.' 6 ? primary 'Margison, G.P.' 7 ? primary 'Williams, D.M.' 8 ? primary 'Czarina Morishita, E.' 9 ? primary 'Takenaka, A.' 10 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*CP*GP*CP*(C6G)P*AP*AP*TP*TP*CP*GP*CP*G)-3') ; 3721.428 2 ? ? ? ? 2 non-polymer syn 'STRONTIUM ION' 87.620 3 ? ? ? ? 3 non-polymer syn "2'-(4-HYDROXYPHENYL)-5-(4-METHYL-1-PIPERAZINYL)-2,5'-BI-BENZIMIDAZOLE" 424.498 1 ? ? ? ? 4 water nat water 18.015 135 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(DC)(DG)(DC)(C6G)(DA)(DA)(DT)(DT)(DC)(DG)(DC)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CGCXAATTCGCG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'STRONTIUM ION' SR 3 "2'-(4-HYDROXYPHENYL)-5-(4-METHYL-1-PIPERAZINYL)-2,5'-BI-BENZIMIDAZOLE" HT 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DG n 1 3 DC n 1 4 C6G n 1 5 DA n 1 6 DA n 1 7 DT n 1 8 DT n 1 9 DC n 1 10 DG n 1 11 DC n 1 12 DG n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight C6G 'DNA linking' n '6-(carboxymethoxy)-9-(2-deoxy-5-O-phosphono-beta-D-erythro-pentofuranosyl)-9H-purin-2-amine' ? 'C12 H16 N5 O9 P' 405.257 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 HT non-polymer . "2'-(4-HYDROXYPHENYL)-5-(4-METHYL-1-PIPERAZINYL)-2,5'-BI-BENZIMIDAZOLE" 'HOECHST 33258' 'C25 H24 N6 O' 424.498 SR non-polymer . 'STRONTIUM ION' ? 'Sr 2' 87.620 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC DC A . n A 1 2 DG 2 2 2 DG DG A . n A 1 3 DC 3 3 3 DC DC A . n A 1 4 C6G 4 4 4 C6G C6G A . n A 1 5 DA 5 5 5 DA DA A . n A 1 6 DA 6 6 6 DA DA A . n A 1 7 DT 7 7 7 DT DT A . n A 1 8 DT 8 8 8 DT DT A . n A 1 9 DC 9 9 9 DC DC A . n A 1 10 DG 10 10 10 DG DG A . n A 1 11 DC 11 11 11 DC DC A . n A 1 12 DG 12 12 12 DG DG A . n B 1 1 DC 1 13 13 DC DC B . n B 1 2 DG 2 14 14 DG DG B . n B 1 3 DC 3 15 15 DC DC B . n B 1 4 C6G 4 16 16 C6G C6G B . n B 1 5 DA 5 17 17 DA DA B . n B 1 6 DA 6 18 18 DA DA B . n B 1 7 DT 7 19 19 DT DT B . n B 1 8 DT 8 20 20 DT DT B . n B 1 9 DC 9 21 21 DC DC B . n B 1 10 DG 10 22 22 DG DG B . n B 1 11 DC 11 23 23 DC DC B . n B 1 12 DG 12 24 24 DG DG B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SR 1 101 1 SR SR A . D 2 SR 1 102 2 SR SR A . E 2 SR 1 103 3 SR SR A . F 3 HT 1 101 59 HT HT B . G 4 HOH 1 501 501 HOH HOH A . G 4 HOH 2 502 503 HOH HOH A . G 4 HOH 3 503 512 HOH HOH A . G 4 HOH 4 504 513 HOH HOH A . G 4 HOH 5 505 516 HOH HOH A . G 4 HOH 6 506 517 HOH HOH A . G 4 HOH 7 507 518 HOH HOH A . G 4 HOH 8 508 524 HOH HOH A . G 4 HOH 9 509 28 HOH HOH A . G 4 HOH 10 510 33 HOH HOH A . G 4 HOH 11 511 43 HOH HOH A . G 4 HOH 12 512 44 HOH HOH A . G 4 HOH 13 513 52 HOH HOH A . G 4 HOH 14 514 56 HOH HOH A . G 4 HOH 15 515 62 HOH HOH A . G 4 HOH 16 516 72 HOH HOH A . G 4 HOH 17 517 87 HOH HOH A . G 4 HOH 18 518 120 HOH HOH A . G 4 HOH 19 519 122 HOH HOH A . G 4 HOH 20 520 131 HOH HOH A . G 4 HOH 21 521 133 HOH HOH A . G 4 HOH 22 522 136 HOH HOH A . G 4 HOH 23 523 138 HOH HOH A . G 4 HOH 24 524 139 HOH HOH A . G 4 HOH 25 525 142 HOH HOH A . G 4 HOH 26 526 144 HOH HOH A . G 4 HOH 27 527 150 HOH HOH A . G 4 HOH 28 528 153 HOH HOH A . G 4 HOH 29 529 160 HOH HOH A . G 4 HOH 30 530 162 HOH HOH A . G 4 HOH 31 531 164 HOH HOH A . G 4 HOH 32 532 168 HOH HOH A . G 4 HOH 33 533 169 HOH HOH A . G 4 HOH 34 534 170 HOH HOH A . G 4 HOH 35 535 179 HOH HOH A . G 4 HOH 36 536 186 HOH HOH A . G 4 HOH 37 537 529 HOH HOH A . G 4 HOH 38 538 530 HOH HOH A . G 4 HOH 39 539 535 HOH HOH A . G 4 HOH 40 540 538 HOH HOH A . G 4 HOH 41 541 551 HOH HOH A . G 4 HOH 42 542 557 HOH HOH A . G 4 HOH 43 543 558 HOH HOH A . G 4 HOH 44 544 559 HOH HOH A . G 4 HOH 45 545 568 HOH HOH A . G 4 HOH 46 546 569 HOH HOH A . G 4 HOH 47 547 580 HOH HOH A . G 4 HOH 48 548 595 HOH HOH A . G 4 HOH 49 549 597 HOH HOH A . G 4 HOH 50 550 599 HOH HOH A . G 4 HOH 51 551 603 HOH HOH A . G 4 HOH 52 552 604 HOH HOH A . G 4 HOH 53 553 607 HOH HOH A . G 4 HOH 54 554 609 HOH HOH A . G 4 HOH 55 555 614 HOH HOH A . G 4 HOH 56 556 615 HOH HOH A . G 4 HOH 57 557 616 HOH HOH A . G 4 HOH 58 558 617 HOH HOH A . G 4 HOH 59 559 618 HOH HOH A . G 4 HOH 60 560 620 HOH HOH A . G 4 HOH 61 561 621 HOH HOH A . G 4 HOH 62 562 622 HOH HOH A . G 4 HOH 63 563 624 HOH HOH A . G 4 HOH 64 564 629 HOH HOH A . G 4 HOH 65 565 1 HOH HOH A . G 4 HOH 66 566 2 HOH HOH A . G 4 HOH 67 567 3 HOH HOH A . G 4 HOH 68 568 4 HOH HOH A . G 4 HOH 69 569 11 HOH HOH A . G 4 HOH 70 570 49 HOH HOH A . G 4 HOH 71 571 56 HOH HOH A . G 4 HOH 72 572 58 HOH HOH A . G 4 HOH 73 573 59 HOH HOH A . G 4 HOH 74 574 68 HOH HOH A . G 4 HOH 75 575 69 HOH HOH A . H 4 HOH 1 201 510 HOH HOH B . H 4 HOH 2 202 514 HOH HOH B . H 4 HOH 3 203 519 HOH HOH B . H 4 HOH 4 204 520 HOH HOH B . H 4 HOH 5 205 522 HOH HOH B . H 4 HOH 6 206 30 HOH HOH B . H 4 HOH 7 207 34 HOH HOH B . H 4 HOH 8 208 35 HOH HOH B . H 4 HOH 9 209 47 HOH HOH B . H 4 HOH 10 210 76 HOH HOH B . H 4 HOH 11 211 130 HOH HOH B . H 4 HOH 12 212 132 HOH HOH B . H 4 HOH 13 213 135 HOH HOH B . H 4 HOH 14 214 137 HOH HOH B . H 4 HOH 15 215 141 HOH HOH B . H 4 HOH 16 216 145 HOH HOH B . H 4 HOH 17 217 146 HOH HOH B . H 4 HOH 18 218 148 HOH HOH B . H 4 HOH 19 219 152 HOH HOH B . H 4 HOH 20 220 155 HOH HOH B . H 4 HOH 21 221 159 HOH HOH B . H 4 HOH 22 222 171 HOH HOH B . H 4 HOH 23 223 177 HOH HOH B . H 4 HOH 24 224 180 HOH HOH B . H 4 HOH 25 225 182 HOH HOH B . H 4 HOH 26 226 199 HOH HOH B . H 4 HOH 27 227 214 HOH HOH B . H 4 HOH 28 228 528 HOH HOH B . H 4 HOH 29 229 534 HOH HOH B . H 4 HOH 30 230 536 HOH HOH B . H 4 HOH 31 231 539 HOH HOH B . H 4 HOH 32 232 545 HOH HOH B . H 4 HOH 33 233 552 HOH HOH B . H 4 HOH 34 234 553 HOH HOH B . H 4 HOH 35 235 561 HOH HOH B . H 4 HOH 36 236 562 HOH HOH B . H 4 HOH 37 237 563 HOH HOH B . H 4 HOH 38 238 573 HOH HOH B . H 4 HOH 39 239 577 HOH HOH B . H 4 HOH 40 240 578 HOH HOH B . H 4 HOH 41 241 579 HOH HOH B . H 4 HOH 42 242 581 HOH HOH B . H 4 HOH 43 243 586 HOH HOH B . H 4 HOH 44 244 587 HOH HOH B . H 4 HOH 45 245 588 HOH HOH B . H 4 HOH 46 246 600 HOH HOH B . H 4 HOH 47 247 601 HOH HOH B . H 4 HOH 48 248 605 HOH HOH B . H 4 HOH 49 249 619 HOH HOH B . H 4 HOH 50 250 623 HOH HOH B . H 4 HOH 51 251 625 HOH HOH B . H 4 HOH 52 252 626 HOH HOH B . H 4 HOH 53 253 628 HOH HOH B . H 4 HOH 54 254 5 HOH HOH B . H 4 HOH 55 255 6 HOH HOH B . H 4 HOH 56 256 12 HOH HOH B . H 4 HOH 57 257 13 HOH HOH B . H 4 HOH 58 258 15 HOH HOH B . H 4 HOH 59 259 28 HOH HOH B . H 4 HOH 60 260 54 HOH HOH B . # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 SCALA 3.3.20 2011/05/18 other 'Phil R. Evans' pre@mrc-lmb.cam.ac.uk 'data scaling' http://www.ccp4.ac.uk/dist/html/scala.html Fortran_77 ? 2 MOLREP . ? program 'Alexei Vaguine' alexei@ysbl.york.ac.uk phasing http://www.ccp4.ac.uk/dist/html/molrep.html Fortran_77 ? 3 REFMAC . ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 4 PDB_EXTRACT 3.11 'April 22, 2011' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? # _cell.entry_id 4IJ0 _cell.length_a 24.600 _cell.length_b 41.230 _cell.length_c 63.070 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4IJ0 _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # _exptl.entry_id 4IJ0 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.15 _exptl_crystal.density_percent_sol 42.76 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details ;10%(v/v)MPD, 12mM spermine 4HCL, 40mM LiCL, 80mM SrCL2, 40mM Na cacodylate(pH7.0), 1mM Hoechst 33258, 1mM DNA, vapor diffusion, hanging drop, temperature 277K ; # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.pdbx_collection_date 2012-11-11 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.98 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'PHOTON FACTORY BEAMLINE BL-17A' _diffrn_source.pdbx_synchrotron_site 'Photon Factory' _diffrn_source.pdbx_synchrotron_beamline BL-17A _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.98 # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 4IJ0 _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 24.600 _reflns.d_resolution_high 1.540 _reflns.number_obs 9559 _reflns.number_all 9559 _reflns.percent_possible_obs 95.800 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.089 _reflns.pdbx_netI_over_sigmaI 14.200 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 6.500 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? # loop_ _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_ordinal _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.percent_possible_all _reflns_shell.Rmerge_I_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_unique_obs _reflns_shell.pdbx_chi_squared 1 1 1.540 1.620 100.000 0.286 0.286 2.600 6.700 ? ? ? ? ? ? 1 2 1.620 1.720 100.000 0.186 0.186 3.900 6.800 ? ? ? ? ? ? 1 3 1.720 1.840 99.900 0.148 0.148 4.700 6.700 ? ? ? ? ? ? 1 4 1.840 1.990 100.000 0.117 0.117 6.100 6.700 ? ? ? ? ? ? 1 5 1.990 2.180 100.000 0.089 0.089 7.800 6.800 ? ? ? ? ? ? 1 6 2.180 2.430 100.000 0.074 0.074 9.000 6.700 ? ? ? ? ? ? 1 7 2.430 2.810 99.800 0.061 0.061 10.500 6.600 ? ? ? ? ? ? 1 8 2.810 3.440 93.200 0.056 0.056 11.900 5.800 ? ? ? ? ? ? 1 9 3.440 4.870 65.500 0.062 0.062 10.700 4.500 ? ? ? ? ? ? 1 10 4.870 24.600 47.700 0.072 0.072 9.400 3.800 ? ? ? ? ? ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 4IJ0 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 9017 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 22.92 _refine.ls_d_res_high 1.54 _refine.ls_percent_reflns_obs 95.09 _refine.ls_R_factor_obs 0.19663 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.19438 _refine.ls_R_factor_R_free 0.23679 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 481 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min 1.000 _refine.occupancy_max 1.000 _refine.correlation_coeff_Fo_to_Fc 0.929 _refine.correlation_coeff_Fo_to_Fc_free 0.909 _refine.B_iso_mean 17.767 _refine.aniso_B[1][1] -0.14 _refine.aniso_B[2][2] 0.14 _refine.aniso_B[3][3] 0.00 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.100 _refine.pdbx_overall_ESU_R_Free 0.102 _refine.overall_SU_ML 0.057 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 1.544 _refine.overall_SU_R_Cruickshank_DPI 0.1201 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 494 _refine_hist.pdbx_number_atoms_ligand 35 _refine_hist.number_atoms_solvent 135 _refine_hist.number_atoms_total 664 _refine_hist.d_res_high 1.54 _refine_hist.d_res_low 22.92 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.030 0.021 ? 587 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 3.705 3.000 ? 884 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_chiral_restr 0.331 0.200 ? 96 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.037 0.020 ? 288 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 2.618 3.000 ? 587 'X-RAY DIFFRACTION' ? r_scangle_it 3.391 4.500 ? 884 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.540 _refine_ls_shell.d_res_low 1.580 _refine_ls_shell.number_reflns_R_work 647 _refine_ls_shell.R_factor_R_work 0.225 _refine_ls_shell.percent_reflns_obs 99.71 _refine_ls_shell.R_factor_R_free 0.294 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 49 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_obs ? # _struct.entry_id 4IJ0 _struct.title ;Structures of DNA duplexes containing O6-carboxymethylguanine, a lesion associated with gastrointestinal cancer, reveal a mechanism for inducing transition mutation ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4IJ0 _struct_keywords.text 'damaged DNA, O6-carboxymethylguanine, mutagenesis, DNA' _struct_keywords.pdbx_keywords DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 3 ? G N N 4 ? H N N 4 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 4IJ0 _struct_ref.pdbx_db_accession 4IJ0 _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4IJ0 A 1 ? 12 ? 4IJ0 1 ? 12 ? 1 12 2 1 4IJ0 B 1 ? 12 ? 4IJ0 13 ? 24 ? 13 24 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1830 ? 1 MORE -78 ? 1 'SSA (A^2)' 5270 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A DC 3 "O3'" ? ? ? 1_555 A C6G 4 P ? ? A DC 3 A C6G 4 1_555 ? ? ? ? ? ? ? 1.623 ? ? covale2 covale one ? A C6G 4 "O3'" ? ? ? 1_555 A DA 5 P ? ? A C6G 4 A DA 5 1_555 ? ? ? ? ? ? ? 1.632 ? ? covale3 covale both ? B DC 3 "O3'" ? ? ? 1_555 B C6G 4 P ? ? B DC 15 B C6G 16 1_555 ? ? ? ? ? ? ? 1.658 ? ? covale4 covale one ? B C6G 4 "O3'" ? ? ? 1_555 B DA 5 P ? ? B C6G 16 B DA 17 1_555 ? ? ? ? ? ? ? 1.592 ? ? metalc1 metalc ? ? C SR . SR ? ? ? 1_555 G HOH . O ? ? A SR 101 A HOH 505 1_555 ? ? ? ? ? ? ? 2.503 ? ? metalc2 metalc ? ? C SR . SR ? ? ? 1_555 G HOH . O ? ? A SR 101 A HOH 509 1_555 ? ? ? ? ? ? ? 2.628 ? ? metalc3 metalc ? ? C SR . SR ? ? ? 1_555 G HOH . O ? ? A SR 101 A HOH 511 1_555 ? ? ? ? ? ? ? 2.642 ? ? metalc4 metalc ? ? C SR . SR ? ? ? 1_555 G HOH . O ? ? A SR 101 A HOH 520 1_555 ? ? ? ? ? ? ? 2.589 ? ? metalc5 metalc ? ? C SR . SR ? ? ? 1_555 G HOH . O ? ? A SR 101 A HOH 570 1_555 ? ? ? ? ? ? ? 2.741 ? ? metalc6 metalc ? ? C SR . SR ? ? ? 1_555 H HOH . O ? ? A SR 101 B HOH 206 1_555 ? ? ? ? ? ? ? 2.565 ? ? metalc7 metalc ? ? C SR . SR ? ? ? 1_555 H HOH . O ? ? A SR 101 B HOH 209 1_555 ? ? ? ? ? ? ? 2.432 ? ? metalc8 metalc ? ? C SR . SR ? ? ? 1_555 H HOH . O ? ? A SR 101 B HOH 223 1_555 ? ? ? ? ? ? ? 2.813 ? ? metalc9 metalc ? ? D SR . SR ? ? ? 1_555 G HOH . O ? ? A SR 102 A HOH 502 1_555 ? ? ? ? ? ? ? 2.552 ? ? metalc10 metalc ? ? D SR . SR ? ? ? 1_555 G HOH . O ? ? A SR 102 A HOH 556 1_555 ? ? ? ? ? ? ? 2.674 ? ? metalc11 metalc ? ? D SR . SR ? ? ? 1_555 G HOH . O ? ? A SR 102 A HOH 569 1_555 ? ? ? ? ? ? ? 2.478 ? ? metalc12 metalc ? ? D SR . SR ? ? ? 1_555 H HOH . O ? ? A SR 102 B HOH 251 1_555 ? ? ? ? ? ? ? 2.428 ? ? metalc13 metalc ? ? D SR . SR ? ? ? 1_555 H HOH . O ? ? A SR 102 B HOH 255 1_555 ? ? ? ? ? ? ? 2.456 ? ? metalc14 metalc ? ? D SR . SR ? ? ? 1_555 H HOH . O ? ? A SR 102 B HOH 257 1_555 ? ? ? ? ? ? ? 2.410 ? ? metalc15 metalc ? ? E SR . SR ? ? ? 1_555 G HOH . O ? ? A SR 103 A HOH 514 1_555 ? ? ? ? ? ? ? 2.336 ? ? hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 12 N1 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 12 O6 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 12 N2 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 11 N3 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 11 O2 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 11 N4 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DC 3 N3 ? ? ? 1_555 B DG 10 N1 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 3 N4 ? ? ? 1_555 B DG 10 O6 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 3 O2 ? ? ? 1_555 B DG 10 N2 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DA 5 N1 ? ? ? 1_555 B DT 8 N3 ? ? A DA 5 B DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DA 5 N6 ? ? ? 1_555 B DT 8 O4 ? ? A DA 5 B DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DA 6 N1 ? ? ? 1_555 B DT 7 N3 ? ? A DA 6 B DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DA 6 N6 ? ? ? 1_555 B DT 7 O4 ? ? A DA 6 B DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DT 7 N3 ? ? ? 1_555 B DA 6 N1 ? ? A DT 7 B DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DT 7 O4 ? ? ? 1_555 B DA 6 N6 ? ? A DT 7 B DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DT 8 N3 ? ? ? 1_555 B DA 5 N1 ? ? A DT 8 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DT 8 O4 ? ? ? 1_555 B DA 5 N6 ? ? A DT 8 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DG 10 N1 ? ? ? 1_555 B DC 3 N3 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DG 10 N2 ? ? ? 1_555 B DC 3 O2 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DG 10 O6 ? ? ? 1_555 B DC 3 N4 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DC 11 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DC 11 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DC 11 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DG 12 N1 ? ? ? 1_555 B DC 1 N3 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DG 12 N2 ? ? ? 1_555 B DC 1 O2 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DG 12 O6 ? ? ? 1_555 B DC 1 N4 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? G HOH . ? A HOH 505 ? 1_555 SR ? C SR . ? A SR 101 ? 1_555 O ? G HOH . ? A HOH 509 ? 1_555 78.7 ? 2 O ? G HOH . ? A HOH 505 ? 1_555 SR ? C SR . ? A SR 101 ? 1_555 O ? G HOH . ? A HOH 511 ? 1_555 148.0 ? 3 O ? G HOH . ? A HOH 509 ? 1_555 SR ? C SR . ? A SR 101 ? 1_555 O ? G HOH . ? A HOH 511 ? 1_555 76.9 ? 4 O ? G HOH . ? A HOH 505 ? 1_555 SR ? C SR . ? A SR 101 ? 1_555 O ? G HOH . ? A HOH 520 ? 1_555 72.7 ? 5 O ? G HOH . ? A HOH 509 ? 1_555 SR ? C SR . ? A SR 101 ? 1_555 O ? G HOH . ? A HOH 520 ? 1_555 73.4 ? 6 O ? G HOH . ? A HOH 511 ? 1_555 SR ? C SR . ? A SR 101 ? 1_555 O ? G HOH . ? A HOH 520 ? 1_555 80.8 ? 7 O ? G HOH . ? A HOH 505 ? 1_555 SR ? C SR . ? A SR 101 ? 1_555 O ? G HOH . ? A HOH 570 ? 1_555 102.9 ? 8 O ? G HOH . ? A HOH 509 ? 1_555 SR ? C SR . ? A SR 101 ? 1_555 O ? G HOH . ? A HOH 570 ? 1_555 138.2 ? 9 O ? G HOH . ? A HOH 511 ? 1_555 SR ? C SR . ? A SR 101 ? 1_555 O ? G HOH . ? A HOH 570 ? 1_555 82.6 ? 10 O ? G HOH . ? A HOH 520 ? 1_555 SR ? C SR . ? A SR 101 ? 1_555 O ? G HOH . ? A HOH 570 ? 1_555 67.6 ? 11 O ? G HOH . ? A HOH 505 ? 1_555 SR ? C SR . ? A SR 101 ? 1_555 O ? H HOH . ? B HOH 206 ? 1_555 75.3 ? 12 O ? G HOH . ? A HOH 509 ? 1_555 SR ? C SR . ? A SR 101 ? 1_555 O ? H HOH . ? B HOH 206 ? 1_555 140.4 ? 13 O ? G HOH . ? A HOH 511 ? 1_555 SR ? C SR . ? A SR 101 ? 1_555 O ? H HOH . ? B HOH 206 ? 1_555 136.0 ? 14 O ? G HOH . ? A HOH 520 ? 1_555 SR ? C SR . ? A SR 101 ? 1_555 O ? H HOH . ? B HOH 206 ? 1_555 124.5 ? 15 O ? G HOH . ? A HOH 570 ? 1_555 SR ? C SR . ? A SR 101 ? 1_555 O ? H HOH . ? B HOH 206 ? 1_555 77.2 ? 16 O ? G HOH . ? A HOH 505 ? 1_555 SR ? C SR . ? A SR 101 ? 1_555 O ? H HOH . ? B HOH 209 ? 1_555 139.4 ? 17 O ? G HOH . ? A HOH 509 ? 1_555 SR ? C SR . ? A SR 101 ? 1_555 O ? H HOH . ? B HOH 209 ? 1_555 106.3 ? 18 O ? G HOH . ? A HOH 511 ? 1_555 SR ? C SR . ? A SR 101 ? 1_555 O ? H HOH . ? B HOH 209 ? 1_555 68.3 ? 19 O ? G HOH . ? A HOH 520 ? 1_555 SR ? C SR . ? A SR 101 ? 1_555 O ? H HOH . ? B HOH 209 ? 1_555 147.9 ? 20 O ? G HOH . ? A HOH 570 ? 1_555 SR ? C SR . ? A SR 101 ? 1_555 O ? H HOH . ? B HOH 209 ? 1_555 99.0 ? 21 O ? H HOH . ? B HOH 206 ? 1_555 SR ? C SR . ? A SR 101 ? 1_555 O ? H HOH . ? B HOH 209 ? 1_555 76.9 ? 22 O ? G HOH . ? A HOH 505 ? 1_555 SR ? C SR . ? A SR 101 ? 1_555 O ? H HOH . ? B HOH 223 ? 1_555 68.7 ? 23 O ? G HOH . ? A HOH 509 ? 1_555 SR ? C SR . ? A SR 101 ? 1_555 O ? H HOH . ? B HOH 223 ? 1_555 72.9 ? 24 O ? G HOH . ? A HOH 511 ? 1_555 SR ? C SR . ? A SR 101 ? 1_555 O ? H HOH . ? B HOH 223 ? 1_555 121.9 ? 25 O ? G HOH . ? A HOH 520 ? 1_555 SR ? C SR . ? A SR 101 ? 1_555 O ? H HOH . ? B HOH 223 ? 1_555 132.5 ? 26 O ? G HOH . ? A HOH 570 ? 1_555 SR ? C SR . ? A SR 101 ? 1_555 O ? H HOH . ? B HOH 223 ? 1_555 147.3 ? 27 O ? H HOH . ? B HOH 206 ? 1_555 SR ? C SR . ? A SR 101 ? 1_555 O ? H HOH . ? B HOH 223 ? 1_555 70.1 ? 28 O ? H HOH . ? B HOH 209 ? 1_555 SR ? C SR . ? A SR 101 ? 1_555 O ? H HOH . ? B HOH 223 ? 1_555 74.3 ? 29 O ? G HOH . ? A HOH 502 ? 1_555 SR ? D SR . ? A SR 102 ? 1_555 O ? G HOH . ? A HOH 556 ? 1_555 68.7 ? 30 O ? G HOH . ? A HOH 502 ? 1_555 SR ? D SR . ? A SR 102 ? 1_555 O ? G HOH . ? A HOH 569 ? 1_555 69.4 ? 31 O ? G HOH . ? A HOH 556 ? 1_555 SR ? D SR . ? A SR 102 ? 1_555 O ? G HOH . ? A HOH 569 ? 1_555 112.8 ? 32 O ? G HOH . ? A HOH 502 ? 1_555 SR ? D SR . ? A SR 102 ? 1_555 O ? H HOH . ? B HOH 251 ? 1_555 140.5 ? 33 O ? G HOH . ? A HOH 556 ? 1_555 SR ? D SR . ? A SR 102 ? 1_555 O ? H HOH . ? B HOH 251 ? 1_555 149.5 ? 34 O ? G HOH . ? A HOH 569 ? 1_555 SR ? D SR . ? A SR 102 ? 1_555 O ? H HOH . ? B HOH 251 ? 1_555 80.4 ? 35 O ? G HOH . ? A HOH 502 ? 1_555 SR ? D SR . ? A SR 102 ? 1_555 O ? H HOH . ? B HOH 255 ? 1_555 138.1 ? 36 O ? G HOH . ? A HOH 556 ? 1_555 SR ? D SR . ? A SR 102 ? 1_555 O ? H HOH . ? B HOH 255 ? 1_555 77.4 ? 37 O ? G HOH . ? A HOH 569 ? 1_555 SR ? D SR . ? A SR 102 ? 1_555 O ? H HOH . ? B HOH 255 ? 1_555 149.7 ? 38 O ? H HOH . ? B HOH 251 ? 1_555 SR ? D SR . ? A SR 102 ? 1_555 O ? H HOH . ? B HOH 255 ? 1_555 78.7 ? 39 O ? G HOH . ? A HOH 502 ? 1_555 SR ? D SR . ? A SR 102 ? 1_555 O ? H HOH . ? B HOH 257 ? 1_555 121.4 ? 40 O ? G HOH . ? A HOH 556 ? 1_555 SR ? D SR . ? A SR 102 ? 1_555 O ? H HOH . ? B HOH 257 ? 1_555 79.6 ? 41 O ? G HOH . ? A HOH 569 ? 1_555 SR ? D SR . ? A SR 102 ? 1_555 O ? H HOH . ? B HOH 257 ? 1_555 80.4 ? 42 O ? H HOH . ? B HOH 251 ? 1_555 SR ? D SR . ? A SR 102 ? 1_555 O ? H HOH . ? B HOH 257 ? 1_555 75.6 ? 43 O ? H HOH . ? B HOH 255 ? 1_555 SR ? D SR . ? A SR 102 ? 1_555 O ? H HOH . ? B HOH 257 ? 1_555 73.4 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A SR 101 ? 8 'BINDING SITE FOR RESIDUE SR A 101' AC2 Software A SR 102 ? 8 'BINDING SITE FOR RESIDUE SR A 102' AC3 Software A SR 103 ? 6 'BINDING SITE FOR RESIDUE SR A 103' AC4 Software B HT 101 ? 15 'BINDING SITE FOR RESIDUE HT B 101' 1 ? ? ? ? ? ? ? # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 8 HOH G . ? HOH A 505 . ? 1_555 ? 2 AC1 8 HOH G . ? HOH A 509 . ? 1_555 ? 3 AC1 8 HOH G . ? HOH A 511 . ? 1_555 ? 4 AC1 8 HOH G . ? HOH A 520 . ? 1_555 ? 5 AC1 8 HOH G . ? HOH A 570 . ? 1_555 ? 6 AC1 8 HOH H . ? HOH B 206 . ? 1_555 ? 7 AC1 8 HOH H . ? HOH B 209 . ? 1_555 ? 8 AC1 8 HOH H . ? HOH B 223 . ? 1_555 ? 9 AC2 8 HOH G . ? HOH A 502 . ? 1_555 ? 10 AC2 8 HOH G . ? HOH A 512 . ? 3_545 ? 11 AC2 8 HOH G . ? HOH A 523 . ? 3_545 ? 12 AC2 8 HOH G . ? HOH A 556 . ? 1_555 ? 13 AC2 8 HOH G . ? HOH A 569 . ? 1_555 ? 14 AC2 8 HOH H . ? HOH B 251 . ? 1_555 ? 15 AC2 8 HOH H . ? HOH B 255 . ? 1_555 ? 16 AC2 8 HOH H . ? HOH B 257 . ? 1_555 ? 17 AC3 6 HOH G . ? HOH A 514 . ? 1_555 ? 18 AC3 6 HOH G . ? HOH A 524 . ? 2_455 ? 19 AC3 6 HOH H . ? HOH B 211 . ? 1_455 ? 20 AC3 6 HOH H . ? HOH B 213 . ? 1_455 ? 21 AC3 6 HOH H . ? HOH B 221 . ? 1_455 ? 22 AC3 6 HOH H . ? HOH B 230 . ? 1_455 ? 23 AC4 15 DA A 5 ? DA A 5 . ? 1_555 ? 24 AC4 15 DA A 6 ? DA A 6 . ? 1_555 ? 25 AC4 15 DT A 7 ? DT A 7 . ? 1_555 ? 26 AC4 15 DT A 8 ? DT A 8 . ? 1_555 ? 27 AC4 15 DC A 9 ? DC A 9 . ? 1_555 ? 28 AC4 15 DG A 12 ? DG A 12 . ? 2_455 ? 29 AC4 15 DT B 7 ? DT B 19 . ? 1_555 ? 30 AC4 15 DT B 8 ? DT B 20 . ? 1_555 ? 31 AC4 15 DC B 9 ? DC B 21 . ? 1_555 ? 32 AC4 15 DG B 10 ? DG B 22 . ? 1_555 ? 33 AC4 15 DC B 11 ? DC B 23 . ? 1_555 ? 34 AC4 15 HOH H . ? HOH B 202 . ? 1_555 ? 35 AC4 15 HOH H . ? HOH B 208 . ? 1_555 ? 36 AC4 15 HOH H . ? HOH B 219 . ? 1_555 ? 37 AC4 15 HOH H . ? HOH B 238 . ? 1_555 ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 N1 A DC 1 ? ? C2 A DC 1 ? ? 1.463 1.397 0.066 0.010 N 2 1 N1 A DG 2 ? ? C2 A DG 2 ? ? 1.444 1.373 0.071 0.008 N 3 1 C6 A DG 2 ? ? O6 A DG 2 ? ? 1.292 1.237 0.055 0.009 N 4 1 C5 A DC 3 ? ? C6 A DC 3 ? ? 1.390 1.339 0.051 0.008 N 5 1 N3 A DA 5 ? ? C4 A DA 5 ? ? 1.383 1.344 0.039 0.006 N 6 1 C6 A DA 5 ? ? N6 A DA 5 ? ? 1.396 1.335 0.061 0.008 N 7 1 N3 A DA 6 ? ? C4 A DA 6 ? ? 1.303 1.344 -0.041 0.006 N 8 1 C8 A DA 6 ? ? N9 A DA 6 ? ? 1.324 1.373 -0.049 0.008 N 9 1 N9 A DA 6 ? ? C4 A DA 6 ? ? 1.414 1.374 0.040 0.006 N 10 1 C5 A DT 7 ? ? C7 A DT 7 ? ? 1.455 1.496 -0.041 0.006 N 11 1 "O4'" A DT 8 ? ? "C4'" A DT 8 ? ? 1.363 1.446 -0.083 0.010 N 12 1 C4 A DT 8 ? ? O4 A DT 8 ? ? 1.166 1.228 -0.062 0.009 N 13 1 C2 A DC 9 ? ? O2 A DC 9 ? ? 1.172 1.240 -0.068 0.009 N 14 1 P A DG 10 ? ? "O5'" A DG 10 ? ? 1.668 1.593 0.075 0.010 N 15 1 "O3'" A DG 12 ? ? "C3'" A DG 12 ? ? 1.376 1.419 -0.043 0.006 N 16 1 C2 A DG 12 ? ? N3 A DG 12 ? ? 1.259 1.323 -0.064 0.008 N 17 1 N7 A DG 12 ? ? C8 A DG 12 ? ? 1.258 1.305 -0.047 0.006 N 18 1 "C5'" B DC 13 ? ? "C4'" B DC 13 ? ? 1.554 1.512 0.042 0.007 N 19 1 "C2'" B DG 14 ? ? "C1'" B DG 14 ? ? 1.454 1.518 -0.064 0.010 N 20 1 C5 B DA 17 ? ? N7 B DA 17 ? ? 1.337 1.388 -0.051 0.006 N 21 1 N9 B DA 17 ? ? C4 B DA 17 ? ? 1.425 1.374 0.051 0.006 N 22 1 C5 B DT 19 ? ? C7 B DT 19 ? ? 1.534 1.496 0.038 0.006 N 23 1 P B DT 20 ? ? "O5'" B DT 20 ? ? 1.659 1.593 0.066 0.010 N 24 1 C5 B DT 20 ? ? C7 B DT 20 ? ? 1.449 1.496 -0.047 0.006 N 25 1 "C3'" B DG 22 ? ? "C2'" B DG 22 ? ? 1.464 1.516 -0.052 0.008 N 26 1 C2 B DG 22 ? ? N3 B DG 22 ? ? 1.380 1.323 0.057 0.008 N 27 1 C6 B DG 22 ? ? N1 B DG 22 ? ? 1.439 1.391 0.048 0.007 N 28 1 C5 B DG 22 ? ? N7 B DG 22 ? ? 1.436 1.388 0.048 0.006 N 29 1 N7 B DG 22 ? ? C8 B DG 22 ? ? 1.266 1.305 -0.039 0.006 N 30 1 P B DC 23 ? ? "O5'" B DC 23 ? ? 1.653 1.593 0.060 0.010 N 31 1 C2 B DC 23 ? ? O2 B DC 23 ? ? 1.310 1.240 0.070 0.009 N 32 1 C2 B DG 24 ? ? N2 B DG 24 ? ? 1.255 1.341 -0.086 0.010 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C4'" A DC 1 ? ? "C3'" A DC 1 ? ? "C2'" A DC 1 ? ? 95.36 102.20 -6.84 0.70 N 2 1 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? "C2'" A DC 1 ? ? 97.58 105.90 -8.32 0.80 N 3 1 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 99.87 108.00 -8.13 0.70 N 4 1 C6 A DC 1 ? ? N1 A DC 1 ? ? C2 A DC 1 ? ? 110.51 120.30 -9.79 0.40 N 5 1 N1 A DC 1 ? ? C2 A DC 1 ? ? N3 A DC 1 ? ? 127.22 119.20 8.02 0.70 N 6 1 N3 A DC 1 ? ? C4 A DC 1 ? ? C5 A DC 1 ? ? 116.83 121.90 -5.07 0.40 N 7 1 C4 A DC 1 ? ? C5 A DC 1 ? ? C6 A DC 1 ? ? 121.02 117.40 3.62 0.50 N 8 1 C5 A DC 1 ? ? C6 A DC 1 ? ? N1 A DC 1 ? ? 124.17 121.00 3.17 0.50 N 9 1 N1 A DC 1 ? ? C2 A DC 1 ? ? O2 A DC 1 ? ? 108.59 118.90 -10.31 0.60 N 10 1 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 99.50 108.00 -8.50 0.70 N 11 1 N1 A DG 2 ? ? C2 A DG 2 ? ? N3 A DG 2 ? ? 118.08 123.90 -5.82 0.60 N 12 1 C2 A DG 2 ? ? N3 A DG 2 ? ? C4 A DG 2 ? ? 120.07 111.90 8.17 0.50 N 13 1 C5 A DG 2 ? ? C6 A DG 2 ? ? N1 A DG 2 ? ? 118.11 111.50 6.61 0.50 N 14 1 C5 A DG 2 ? ? N7 A DG 2 ? ? C8 A DG 2 ? ? 107.45 104.30 3.15 0.50 N 15 1 N7 A DG 2 ? ? C8 A DG 2 ? ? N9 A DG 2 ? ? 108.65 113.10 -4.45 0.50 N 16 1 C8 A DG 2 ? ? N9 A DG 2 ? ? C4 A DG 2 ? ? 108.93 106.40 2.53 0.40 N 17 1 C6 A DG 2 ? ? C5 A DG 2 ? ? N7 A DG 2 ? ? 134.93 130.40 4.53 0.60 N 18 1 N3 A DG 2 ? ? C2 A DG 2 ? ? N2 A DG 2 ? ? 127.39 119.90 7.49 0.70 N 19 1 N1 A DG 2 ? ? C6 A DG 2 ? ? O6 A DG 2 ? ? 113.83 119.90 -6.07 0.60 N 20 1 "O4'" A DC 3 ? ? "C1'" A DC 3 ? ? N1 A DC 3 ? ? 102.51 108.00 -5.49 0.70 N 21 1 C6 A DC 3 ? ? N1 A DC 3 ? ? C2 A DC 3 ? ? 124.87 120.30 4.57 0.40 N 22 1 N3 A DC 3 ? ? C4 A DC 3 ? ? C5 A DC 3 ? ? 127.43 121.90 5.53 0.40 N 23 1 C4 A DC 3 ? ? C5 A DC 3 ? ? C6 A DC 3 ? ? 114.28 117.40 -3.12 0.50 N 24 1 C5 A DC 3 ? ? C4 A DC 3 ? ? N4 A DC 3 ? ? 115.92 120.20 -4.28 0.70 N 25 1 "C3'" A C6G 4 ? ? "O3'" A C6G 4 ? ? P A DA 5 ? ? 131.31 119.70 11.61 1.20 Y 26 1 "O5'" A DA 6 ? ? P A DA 6 ? ? OP2 A DA 6 ? ? 97.62 105.70 -8.08 0.90 N 27 1 N1 A DA 6 ? ? C2 A DA 6 ? ? N3 A DA 6 ? ? 122.65 129.30 -6.65 0.50 N 28 1 C2 A DA 6 ? ? N3 A DA 6 ? ? C4 A DA 6 ? ? 115.73 110.60 5.13 0.50 N 29 1 C5 A DA 6 ? ? N7 A DA 6 ? ? C8 A DA 6 ? ? 98.90 103.90 -5.00 0.50 N 30 1 N7 A DA 6 ? ? C8 A DA 6 ? ? N9 A DA 6 ? ? 120.47 113.80 6.67 0.50 N 31 1 C8 A DA 6 ? ? N9 A DA 6 ? ? C4 A DA 6 ? ? 102.25 105.80 -3.55 0.40 N 32 1 "C1'" A DT 7 ? ? "O4'" A DT 7 ? ? "C4'" A DT 7 ? ? 103.19 110.10 -6.91 1.00 N 33 1 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? "C2'" A DT 7 ? ? 100.05 105.90 -5.85 0.80 N 34 1 C2 A DT 7 ? ? N3 A DT 7 ? ? C4 A DT 7 ? ? 131.84 127.20 4.64 0.60 N 35 1 C6 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 126.84 122.90 3.94 0.60 N 36 1 C6 A DT 8 ? ? N1 A DT 8 ? ? C2 A DT 8 ? ? 118.15 121.30 -3.15 0.50 N 37 1 C4 A DT 8 ? ? C5 A DT 8 ? ? C6 A DT 8 ? ? 112.24 118.00 -5.76 0.60 N 38 1 C5 A DT 8 ? ? C6 A DT 8 ? ? N1 A DT 8 ? ? 128.56 123.70 4.86 0.60 N 39 1 "C4'" A DC 9 ? ? "C3'" A DC 9 ? ? "C2'" A DC 9 ? ? 108.70 103.10 5.60 0.90 N 40 1 "O4'" A DC 9 ? ? "C1'" A DC 9 ? ? N1 A DC 9 ? ? 102.45 108.00 -5.55 0.70 N 41 1 OP1 A DG 10 ? ? P A DG 10 ? ? OP2 A DG 10 ? ? 132.33 119.60 12.73 1.50 N 42 1 "O5'" A DG 10 ? ? P A DG 10 ? ? OP2 A DG 10 ? ? 98.82 105.70 -6.88 0.90 N 43 1 "C3'" A DG 10 ? ? "C2'" A DG 10 ? ? "C1'" A DG 10 ? ? 96.36 102.40 -6.04 0.80 N 44 1 "O4'" A DG 10 ? ? "C1'" A DG 10 ? ? N9 A DG 10 ? ? 110.52 108.30 2.22 0.30 N 45 1 C5 A DG 10 ? ? N7 A DG 10 ? ? C8 A DG 10 ? ? 100.44 104.30 -3.86 0.50 N 46 1 "O4'" A DC 11 ? ? "C1'" A DC 11 ? ? "C2'" A DC 11 ? ? 100.72 105.90 -5.18 0.80 N 47 1 "O4'" A DC 11 ? ? "C1'" A DC 11 ? ? N1 A DC 11 ? ? 99.85 108.00 -8.15 0.70 N 48 1 "O4'" A DG 12 ? ? "C4'" A DG 12 ? ? "C3'" A DG 12 ? ? 100.46 104.50 -4.04 0.40 N 49 1 "C4'" A DG 12 ? ? "C3'" A DG 12 ? ? "C2'" A DG 12 ? ? 111.51 103.10 8.41 0.90 N 50 1 "O4'" B DG 14 ? ? "C4'" B DG 14 ? ? "C3'" B DG 14 ? ? 101.78 104.50 -2.72 0.40 N 51 1 "O4'" B DG 14 ? ? "C1'" B DG 14 ? ? "C2'" B DG 14 ? ? 111.23 106.80 4.43 0.50 N 52 1 N1 B DG 14 ? ? C2 B DG 14 ? ? N3 B DG 14 ? ? 120.21 123.90 -3.69 0.60 N 53 1 N3 B DG 14 ? ? C4 B DG 14 ? ? C5 B DG 14 ? ? 133.34 128.60 4.74 0.50 N 54 1 C4 B DG 14 ? ? C5 B DG 14 ? ? C6 B DG 14 ? ? 114.51 118.80 -4.29 0.60 N 55 1 C4 B DG 14 ? ? C5 B DG 14 ? ? N7 B DG 14 ? ? 113.47 110.80 2.67 0.40 N 56 1 C5 B DG 14 ? ? C6 B DG 14 ? ? O6 B DG 14 ? ? 124.00 128.60 -4.60 0.60 N 57 1 "O4'" B DC 15 ? ? "C1'" B DC 15 ? ? N1 B DC 15 ? ? 103.55 108.00 -4.45 0.70 N 58 1 C6 B DC 15 ? ? N1 B DC 15 ? ? C2 B DC 15 ? ? 117.67 120.30 -2.63 0.40 N 59 1 C5 B DC 15 ? ? C6 B DC 15 ? ? N1 B DC 15 ? ? 124.21 121.00 3.21 0.50 N 60 1 N1 B DC 15 ? ? C2 B DC 15 ? ? O2 B DC 15 ? ? 114.28 118.90 -4.62 0.60 N 61 1 N3 B DC 15 ? ? C2 B DC 15 ? ? O2 B DC 15 ? ? 126.77 121.90 4.87 0.70 N 62 1 C6 B DA 17 ? ? N1 B DA 17 ? ? C2 B DA 17 ? ? 129.35 118.60 10.75 0.60 N 63 1 N1 B DA 17 ? ? C2 B DA 17 ? ? N3 B DA 17 ? ? 117.70 129.30 -11.60 0.50 N 64 1 C2 B DA 17 ? ? N3 B DA 17 ? ? C4 B DA 17 ? ? 114.99 110.60 4.39 0.50 N 65 1 C4 B DA 17 ? ? C5 B DA 17 ? ? C6 B DA 17 ? ? 113.88 117.00 -3.12 0.50 N 66 1 C5 B DA 17 ? ? C6 B DA 17 ? ? N1 B DA 17 ? ? 114.37 117.70 -3.33 0.50 N 67 1 N1 B DA 17 ? ? C6 B DA 17 ? ? N6 B DA 17 ? ? 122.58 118.60 3.98 0.60 N 68 1 C6 B DA 18 ? ? N1 B DA 18 ? ? C2 B DA 18 ? ? 126.93 118.60 8.33 0.60 N 69 1 N1 B DA 18 ? ? C2 B DA 18 ? ? N3 B DA 18 ? ? 122.91 129.30 -6.39 0.50 N 70 1 C5 B DA 18 ? ? C6 B DA 18 ? ? N1 B DA 18 ? ? 114.66 117.70 -3.04 0.50 N 71 1 C5 B DA 18 ? ? N7 B DA 18 ? ? C8 B DA 18 ? ? 99.11 103.90 -4.79 0.50 N 72 1 N7 B DA 18 ? ? C8 B DA 18 ? ? N9 B DA 18 ? ? 119.39 113.80 5.59 0.50 N 73 1 N1 B DA 18 ? ? C6 B DA 18 ? ? N6 B DA 18 ? ? 122.75 118.60 4.15 0.60 N 74 1 OP1 B DT 19 ? ? P B DT 19 ? ? OP2 B DT 19 ? ? 131.19 119.60 11.59 1.50 N 75 1 "O5'" B DT 19 ? ? P B DT 19 ? ? OP2 B DT 19 ? ? 99.65 105.70 -6.05 0.90 N 76 1 C6 B DT 19 ? ? N1 B DT 19 ? ? C2 B DT 19 ? ? 117.41 121.30 -3.89 0.50 N 77 1 N1 B DT 19 ? ? C2 B DT 19 ? ? N3 B DT 19 ? ? 118.22 114.60 3.62 0.60 N 78 1 N3 B DT 19 ? ? C4 B DT 19 ? ? O4 B DT 19 ? ? 123.98 119.90 4.08 0.60 N 79 1 C6 B DT 20 ? ? N1 B DT 20 ? ? C2 B DT 20 ? ? 117.86 121.30 -3.44 0.50 N 80 1 N3 B DT 20 ? ? C4 B DT 20 ? ? C5 B DT 20 ? ? 110.85 115.20 -4.35 0.60 N 81 1 "O5'" B DC 21 ? ? P B DC 21 ? ? OP2 B DC 21 ? ? 96.33 105.70 -9.37 0.90 N 82 1 "O4'" B DC 21 ? ? "C4'" B DC 21 ? ? "C3'" B DC 21 ? ? 102.03 104.50 -2.47 0.40 N 83 1 "C4'" B DC 21 ? ? "C3'" B DC 21 ? ? "C2'" B DC 21 ? ? 108.90 103.10 5.80 0.90 N 84 1 "O4'" B DG 22 ? ? "C1'" B DG 22 ? ? "C2'" B DG 22 ? ? 97.79 105.90 -8.11 0.80 N 85 1 "O4'" B DG 22 ? ? "C1'" B DG 22 ? ? N9 B DG 22 ? ? 113.28 108.30 4.98 0.30 N 86 1 C2 B DG 22 ? ? N3 B DG 22 ? ? C4 B DG 22 ? ? 106.55 111.90 -5.35 0.50 N 87 1 N3 B DG 22 ? ? C4 B DG 22 ? ? C5 B DG 22 ? ? 132.40 128.60 3.80 0.50 N 88 1 C5 B DG 22 ? ? N7 B DG 22 ? ? C8 B DG 22 ? ? 99.62 104.30 -4.68 0.50 N 89 1 N7 B DG 22 ? ? C8 B DG 22 ? ? N9 B DG 22 ? ? 118.98 113.10 5.88 0.50 N 90 1 C8 B DG 22 ? ? N9 B DG 22 ? ? C4 B DG 22 ? ? 103.14 106.40 -3.26 0.40 N 91 1 N3 B DG 22 ? ? C4 B DG 22 ? ? N9 B DG 22 ? ? 121.38 126.00 -4.62 0.60 N 92 1 C6 B DG 22 ? ? C5 B DG 22 ? ? N7 B DG 22 ? ? 126.56 130.40 -3.84 0.60 N 93 1 N1 B DG 22 ? ? C6 B DG 22 ? ? O6 B DG 22 ? ? 113.81 119.90 -6.09 0.60 N 94 1 C5 B DG 22 ? ? C6 B DG 22 ? ? O6 B DG 22 ? ? 137.15 128.60 8.55 0.60 N 95 1 "O4'" B DC 23 ? ? "C1'" B DC 23 ? ? "C2'" B DC 23 ? ? 111.33 106.80 4.53 0.50 N 96 1 "O4'" B DC 23 ? ? "C1'" B DC 23 ? ? N1 B DC 23 ? ? 103.50 108.00 -4.50 0.70 N 97 1 C6 B DC 23 ? ? N1 B DC 23 ? ? C2 B DC 23 ? ? 117.59 120.30 -2.71 0.40 N 98 1 N1 B DC 23 ? ? C2 B DC 23 ? ? N3 B DC 23 ? ? 127.21 119.20 8.01 0.70 N 99 1 C2 B DC 23 ? ? N3 B DC 23 ? ? C4 B DC 23 ? ? 114.22 119.90 -5.68 0.50 N 100 1 C4 B DC 23 ? ? C5 B DC 23 ? ? C6 B DC 23 ? ? 125.21 117.40 7.81 0.50 N 101 1 C5 B DC 23 ? ? C6 B DC 23 ? ? N1 B DC 23 ? ? 114.97 121.00 -6.03 0.50 N 102 1 N1 B DC 23 ? ? C2 B DC 23 ? ? O2 B DC 23 ? ? 113.32 118.90 -5.58 0.60 N 103 1 "O5'" B DG 24 ? ? P B DG 24 ? ? OP2 B DG 24 ? ? 100.02 105.70 -5.68 0.90 N 104 1 C5 B DG 24 ? ? C6 B DG 24 ? ? N1 B DG 24 ? ? 115.24 111.50 3.74 0.50 N 105 1 C4 B DG 24 ? ? C5 B DG 24 ? ? N7 B DG 24 ? ? 108.30 110.80 -2.50 0.40 N 106 1 C5 B DG 24 ? ? N7 B DG 24 ? ? C8 B DG 24 ? ? 109.79 104.30 5.49 0.50 N 107 1 N7 B DG 24 ? ? C8 B DG 24 ? ? N9 B DG 24 ? ? 108.04 113.10 -5.06 0.50 N 108 1 C8 B DG 24 ? ? N9 B DG 24 ? ? C4 B DG 24 ? ? 108.94 106.40 2.54 0.40 N 109 1 N1 B DG 24 ? ? C6 B DG 24 ? ? O6 B DG 24 ? ? 116.22 119.90 -3.68 0.60 N # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 1 _pdbx_validate_planes.auth_comp_id DG _pdbx_validate_planes.auth_asym_id B _pdbx_validate_planes.auth_seq_id 14 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.081 _pdbx_validate_planes.type 'SIDE CHAIN' # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A C6G 4 A C6G 4 ? DG ? 2 B C6G 4 B C6G 16 ? DG ? # _struct_site_keywords.site_id 1 _struct_site_keywords.text 'MAJOR GROOVE BINDER' # _phasing.method MR # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal C6G P P N N 1 C6G OP1 O N N 2 C6G OP2 O N N 3 C6G "O5'" O N N 4 C6G "C5'" C N N 5 C6G "C4'" C N R 6 C6G "O4'" O N N 7 C6G "C1'" C N R 8 C6G N9 N Y N 9 C6G C8 C Y N 10 C6G N7 N Y N 11 C6G C5 C Y N 12 C6G C4 C Y N 13 C6G N3 N Y N 14 C6G C2 C Y N 15 C6G N2 N N N 16 C6G N1 N Y N 17 C6G C6 C Y N 18 C6G O6 O N N 19 C6G "C2'" C N N 20 C6G "C3'" C N S 21 C6G "O3'" O N N 22 C6G C C N N 23 C6G O O N N 24 C6G O7 O N N 25 C6G CH3 C N N 26 C6G HOP2 H N N 27 C6G "H5'" H N N 28 C6G "H5''" H N N 29 C6G "H4'" H N N 30 C6G "H1'" H N N 31 C6G H8 H N N 32 C6G H21 H N N 33 C6G H22 H N N 34 C6G "H2'" H N N 35 C6G "H2''" H N N 36 C6G "H3'" H N N 37 C6G "HO3'" H N N 38 C6G HO7 H N N 39 C6G H31 H N N 40 C6G H32 H N N 41 C6G OP3 O N N 42 C6G HOP3 H N N 43 DA OP3 O N N 44 DA P P N N 45 DA OP1 O N N 46 DA OP2 O N N 47 DA "O5'" O N N 48 DA "C5'" C N N 49 DA "C4'" C N R 50 DA "O4'" O N N 51 DA "C3'" C N S 52 DA "O3'" O N N 53 DA "C2'" C N N 54 DA "C1'" C N R 55 DA N9 N Y N 56 DA C8 C Y N 57 DA N7 N Y N 58 DA C5 C Y N 59 DA C6 C Y N 60 DA N6 N N N 61 DA N1 N Y N 62 DA C2 C Y N 63 DA N3 N Y N 64 DA C4 C Y N 65 DA HOP3 H N N 66 DA HOP2 H N N 67 DA "H5'" H N N 68 DA "H5''" H N N 69 DA "H4'" H N N 70 DA "H3'" H N N 71 DA "HO3'" H N N 72 DA "H2'" H N N 73 DA "H2''" H N N 74 DA "H1'" H N N 75 DA H8 H N N 76 DA H61 H N N 77 DA H62 H N N 78 DA H2 H N N 79 DC OP3 O N N 80 DC P P N N 81 DC OP1 O N N 82 DC OP2 O N N 83 DC "O5'" O N N 84 DC "C5'" C N N 85 DC "C4'" C N R 86 DC "O4'" O N N 87 DC "C3'" C N S 88 DC "O3'" O N N 89 DC "C2'" C N N 90 DC "C1'" C N R 91 DC N1 N N N 92 DC C2 C N N 93 DC O2 O N N 94 DC N3 N N N 95 DC C4 C N N 96 DC N4 N N N 97 DC C5 C N N 98 DC C6 C N N 99 DC HOP3 H N N 100 DC HOP2 H N N 101 DC "H5'" H N N 102 DC "H5''" H N N 103 DC "H4'" H N N 104 DC "H3'" H N N 105 DC "HO3'" H N N 106 DC "H2'" H N N 107 DC "H2''" H N N 108 DC "H1'" H N N 109 DC H41 H N N 110 DC H42 H N N 111 DC H5 H N N 112 DC H6 H N N 113 DG OP3 O N N 114 DG P P N N 115 DG OP1 O N N 116 DG OP2 O N N 117 DG "O5'" O N N 118 DG "C5'" C N N 119 DG "C4'" C N R 120 DG "O4'" O N N 121 DG "C3'" C N S 122 DG "O3'" O N N 123 DG "C2'" C N N 124 DG "C1'" C N R 125 DG N9 N Y N 126 DG C8 C Y N 127 DG N7 N Y N 128 DG C5 C Y N 129 DG C6 C N N 130 DG O6 O N N 131 DG N1 N N N 132 DG C2 C N N 133 DG N2 N N N 134 DG N3 N N N 135 DG C4 C Y N 136 DG HOP3 H N N 137 DG HOP2 H N N 138 DG "H5'" H N N 139 DG "H5''" H N N 140 DG "H4'" H N N 141 DG "H3'" H N N 142 DG "HO3'" H N N 143 DG "H2'" H N N 144 DG "H2''" H N N 145 DG "H1'" H N N 146 DG H8 H N N 147 DG H1 H N N 148 DG H21 H N N 149 DG H22 H N N 150 DT OP3 O N N 151 DT P P N N 152 DT OP1 O N N 153 DT OP2 O N N 154 DT "O5'" O N N 155 DT "C5'" C N N 156 DT "C4'" C N R 157 DT "O4'" O N N 158 DT "C3'" C N S 159 DT "O3'" O N N 160 DT "C2'" C N N 161 DT "C1'" C N R 162 DT N1 N N N 163 DT C2 C N N 164 DT O2 O N N 165 DT N3 N N N 166 DT C4 C N N 167 DT O4 O N N 168 DT C5 C N N 169 DT C7 C N N 170 DT C6 C N N 171 DT HOP3 H N N 172 DT HOP2 H N N 173 DT "H5'" H N N 174 DT "H5''" H N N 175 DT "H4'" H N N 176 DT "H3'" H N N 177 DT "HO3'" H N N 178 DT "H2'" H N N 179 DT "H2''" H N N 180 DT "H1'" H N N 181 DT H3 H N N 182 DT H71 H N N 183 DT H72 H N N 184 DT H73 H N N 185 DT H6 H N N 186 HOH O O N N 187 HOH H1 H N N 188 HOH H2 H N N 189 HT O1 O N N 190 HT C1 C Y N 191 HT C4 C Y N 192 HT C2 C Y N 193 HT C3 C Y N 194 HT C6 C Y N 195 HT C5 C Y N 196 HT C7 C Y N 197 HT N1 N Y N 198 HT C8 C Y N 199 HT C9 C Y N 200 HT N2 N Y N 201 HT C10 C Y N 202 HT C11 C Y N 203 HT C12 C Y N 204 HT C13 C Y N 205 HT C14 C Y N 206 HT N3 N Y N 207 HT C15 C Y N 208 HT C16 C Y N 209 HT N4 N Y N 210 HT C17 C Y N 211 HT C18 C Y N 212 HT C19 C Y N 213 HT C20 C Y N 214 HT N5 N N N 215 HT C21 C N N 216 HT C22 C N N 217 HT N6 N N N 218 HT C23 C N N 219 HT C24 C N N 220 HT C25 C N N 221 HT HO1 H N N 222 HT H2 H N N 223 HT H3 H N N 224 HT H5 H N N 225 HT H6 H N N 226 HT HN1 H N N 227 HT H10 H N N 228 HT H11 H N N 229 HT H13 H N N 230 HT HN3 H N N 231 HT H17 H N N 232 HT H18 H N N 233 HT H20 H N N 234 HT H211 H N N 235 HT H212 H N N 236 HT H221 H N N 237 HT H222 H N N 238 HT H231 H N N 239 HT H232 H N N 240 HT H241 H N N 241 HT H242 H N N 242 HT H253 H N N 243 HT H252 H N N 244 HT H251 H N N 245 SR SR SR N N 246 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal C6G OP1 P doub N N 1 C6G P OP2 sing N N 2 C6G P "O5'" sing N N 3 C6G O C doub N N 4 C6G C O7 sing N N 5 C6G C CH3 sing N N 6 C6G "O5'" "C5'" sing N N 7 C6G "C5'" "C4'" sing N N 8 C6G N7 C8 doub Y N 9 C6G N7 C5 sing Y N 10 C6G C8 N9 sing Y N 11 C6G O6 CH3 sing N N 12 C6G O6 C6 sing N N 13 C6G "C2'" "C3'" sing N N 14 C6G "C2'" "C1'" sing N N 15 C6G C5 C6 doub Y N 16 C6G C5 C4 sing Y N 17 C6G C6 N1 sing Y N 18 C6G N9 C4 sing Y N 19 C6G N9 "C1'" sing N N 20 C6G "C3'" "C4'" sing N N 21 C6G "C3'" "O3'" sing N N 22 C6G C4 N3 doub Y N 23 C6G "C4'" "O4'" sing N N 24 C6G N1 C2 doub Y N 25 C6G "C1'" "O4'" sing N N 26 C6G N3 C2 sing Y N 27 C6G C2 N2 sing N N 28 C6G OP2 HOP2 sing N N 29 C6G "C5'" "H5'" sing N N 30 C6G "C5'" "H5''" sing N N 31 C6G "C4'" "H4'" sing N N 32 C6G "C1'" "H1'" sing N N 33 C6G C8 H8 sing N N 34 C6G N2 H21 sing N N 35 C6G N2 H22 sing N N 36 C6G "C2'" "H2'" sing N N 37 C6G "C2'" "H2''" sing N N 38 C6G "C3'" "H3'" sing N N 39 C6G "O3'" "HO3'" sing N N 40 C6G O7 HO7 sing N N 41 C6G CH3 H31 sing N N 42 C6G CH3 H32 sing N N 43 C6G P OP3 sing N N 44 C6G OP3 HOP3 sing N N 45 DA OP3 P sing N N 46 DA OP3 HOP3 sing N N 47 DA P OP1 doub N N 48 DA P OP2 sing N N 49 DA P "O5'" sing N N 50 DA OP2 HOP2 sing N N 51 DA "O5'" "C5'" sing N N 52 DA "C5'" "C4'" sing N N 53 DA "C5'" "H5'" sing N N 54 DA "C5'" "H5''" sing N N 55 DA "C4'" "O4'" sing N N 56 DA "C4'" "C3'" sing N N 57 DA "C4'" "H4'" sing N N 58 DA "O4'" "C1'" sing N N 59 DA "C3'" "O3'" sing N N 60 DA "C3'" "C2'" sing N N 61 DA "C3'" "H3'" sing N N 62 DA "O3'" "HO3'" sing N N 63 DA "C2'" "C1'" sing N N 64 DA "C2'" "H2'" sing N N 65 DA "C2'" "H2''" sing N N 66 DA "C1'" N9 sing N N 67 DA "C1'" "H1'" sing N N 68 DA N9 C8 sing Y N 69 DA N9 C4 sing Y N 70 DA C8 N7 doub Y N 71 DA C8 H8 sing N N 72 DA N7 C5 sing Y N 73 DA C5 C6 sing Y N 74 DA C5 C4 doub Y N 75 DA C6 N6 sing N N 76 DA C6 N1 doub Y N 77 DA N6 H61 sing N N 78 DA N6 H62 sing N N 79 DA N1 C2 sing Y N 80 DA C2 N3 doub Y N 81 DA C2 H2 sing N N 82 DA N3 C4 sing Y N 83 DC OP3 P sing N N 84 DC OP3 HOP3 sing N N 85 DC P OP1 doub N N 86 DC P OP2 sing N N 87 DC P "O5'" sing N N 88 DC OP2 HOP2 sing N N 89 DC "O5'" "C5'" sing N N 90 DC "C5'" "C4'" sing N N 91 DC "C5'" "H5'" sing N N 92 DC "C5'" "H5''" sing N N 93 DC "C4'" "O4'" sing N N 94 DC "C4'" "C3'" sing N N 95 DC "C4'" "H4'" sing N N 96 DC "O4'" "C1'" sing N N 97 DC "C3'" "O3'" sing N N 98 DC "C3'" "C2'" sing N N 99 DC "C3'" "H3'" sing N N 100 DC "O3'" "HO3'" sing N N 101 DC "C2'" "C1'" sing N N 102 DC "C2'" "H2'" sing N N 103 DC "C2'" "H2''" sing N N 104 DC "C1'" N1 sing N N 105 DC "C1'" "H1'" sing N N 106 DC N1 C2 sing N N 107 DC N1 C6 sing N N 108 DC C2 O2 doub N N 109 DC C2 N3 sing N N 110 DC N3 C4 doub N N 111 DC C4 N4 sing N N 112 DC C4 C5 sing N N 113 DC N4 H41 sing N N 114 DC N4 H42 sing N N 115 DC C5 C6 doub N N 116 DC C5 H5 sing N N 117 DC C6 H6 sing N N 118 DG OP3 P sing N N 119 DG OP3 HOP3 sing N N 120 DG P OP1 doub N N 121 DG P OP2 sing N N 122 DG P "O5'" sing N N 123 DG OP2 HOP2 sing N N 124 DG "O5'" "C5'" sing N N 125 DG "C5'" "C4'" sing N N 126 DG "C5'" "H5'" sing N N 127 DG "C5'" "H5''" sing N N 128 DG "C4'" "O4'" sing N N 129 DG "C4'" "C3'" sing N N 130 DG "C4'" "H4'" sing N N 131 DG "O4'" "C1'" sing N N 132 DG "C3'" "O3'" sing N N 133 DG "C3'" "C2'" sing N N 134 DG "C3'" "H3'" sing N N 135 DG "O3'" "HO3'" sing N N 136 DG "C2'" "C1'" sing N N 137 DG "C2'" "H2'" sing N N 138 DG "C2'" "H2''" sing N N 139 DG "C1'" N9 sing N N 140 DG "C1'" "H1'" sing N N 141 DG N9 C8 sing Y N 142 DG N9 C4 sing Y N 143 DG C8 N7 doub Y N 144 DG C8 H8 sing N N 145 DG N7 C5 sing Y N 146 DG C5 C6 sing N N 147 DG C5 C4 doub Y N 148 DG C6 O6 doub N N 149 DG C6 N1 sing N N 150 DG N1 C2 sing N N 151 DG N1 H1 sing N N 152 DG C2 N2 sing N N 153 DG C2 N3 doub N N 154 DG N2 H21 sing N N 155 DG N2 H22 sing N N 156 DG N3 C4 sing N N 157 DT OP3 P sing N N 158 DT OP3 HOP3 sing N N 159 DT P OP1 doub N N 160 DT P OP2 sing N N 161 DT P "O5'" sing N N 162 DT OP2 HOP2 sing N N 163 DT "O5'" "C5'" sing N N 164 DT "C5'" "C4'" sing N N 165 DT "C5'" "H5'" sing N N 166 DT "C5'" "H5''" sing N N 167 DT "C4'" "O4'" sing N N 168 DT "C4'" "C3'" sing N N 169 DT "C4'" "H4'" sing N N 170 DT "O4'" "C1'" sing N N 171 DT "C3'" "O3'" sing N N 172 DT "C3'" "C2'" sing N N 173 DT "C3'" "H3'" sing N N 174 DT "O3'" "HO3'" sing N N 175 DT "C2'" "C1'" sing N N 176 DT "C2'" "H2'" sing N N 177 DT "C2'" "H2''" sing N N 178 DT "C1'" N1 sing N N 179 DT "C1'" "H1'" sing N N 180 DT N1 C2 sing N N 181 DT N1 C6 sing N N 182 DT C2 O2 doub N N 183 DT C2 N3 sing N N 184 DT N3 C4 sing N N 185 DT N3 H3 sing N N 186 DT C4 O4 doub N N 187 DT C4 C5 sing N N 188 DT C5 C7 sing N N 189 DT C5 C6 doub N N 190 DT C7 H71 sing N N 191 DT C7 H72 sing N N 192 DT C7 H73 sing N N 193 DT C6 H6 sing N N 194 HOH O H1 sing N N 195 HOH O H2 sing N N 196 HT O1 C1 sing N N 197 HT O1 HO1 sing N N 198 HT C1 C2 doub Y N 199 HT C1 C6 sing Y N 200 HT C2 C3 sing Y N 201 HT C2 H2 sing N N 202 HT C3 C4 doub Y N 203 HT C3 H3 sing N N 204 HT C4 C5 sing Y N 205 HT C4 C7 sing Y N 206 HT C5 C6 doub Y N 207 HT C5 H5 sing N N 208 HT C6 H6 sing N N 209 HT C7 N1 sing Y N 210 HT C7 N2 doub Y N 211 HT N1 C8 sing Y N 212 HT N1 HN1 sing N N 213 HT C8 C9 doub Y N 214 HT C8 C13 sing Y N 215 HT C9 N2 sing Y N 216 HT C9 C10 sing Y N 217 HT C10 C11 doub Y N 218 HT C10 H10 sing N N 219 HT C11 C12 sing Y N 220 HT C11 H11 sing N N 221 HT C12 C13 doub Y N 222 HT C12 C14 sing Y N 223 HT C13 H13 sing N N 224 HT C14 N3 sing Y N 225 HT C14 N4 doub Y N 226 HT N3 C15 sing Y N 227 HT N3 HN3 sing N N 228 HT C15 C16 doub Y N 229 HT C15 C20 sing Y N 230 HT C16 N4 sing Y N 231 HT C16 C17 sing Y N 232 HT C17 C18 doub Y N 233 HT C17 H17 sing N N 234 HT C18 C19 sing Y N 235 HT C18 H18 sing N N 236 HT C19 C20 doub Y N 237 HT C19 N5 sing N N 238 HT C20 H20 sing N N 239 HT N5 C21 sing N N 240 HT N5 C24 sing N N 241 HT C21 C22 sing N N 242 HT C21 H211 sing N N 243 HT C21 H212 sing N N 244 HT C22 N6 sing N N 245 HT C22 H221 sing N N 246 HT C22 H222 sing N N 247 HT N6 C23 sing N N 248 HT N6 C25 sing N N 249 HT C23 C24 sing N N 250 HT C23 H231 sing N N 251 HT C23 H232 sing N N 252 HT C24 H241 sing N N 253 HT C24 H242 sing N N 254 HT C25 H253 sing N N 255 HT C25 H252 sing N N 256 HT C25 H251 sing N N 257 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 4IJ0 'double helix' 4IJ0 'b-form double helix' 4IJ0 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 12 1_555 0.150 -0.110 0.320 -11.510 -12.487 -1.159 1 A_DC1:DG24_B A 1 ? B 24 ? 19 1 1 A DG 2 1_555 B DC 11 1_555 -0.037 -0.223 0.445 -0.150 -8.231 -3.266 2 A_DG2:DC23_B A 2 ? B 23 ? 19 1 1 A DC 3 1_555 B DG 10 1_555 0.218 -0.037 -0.217 -0.446 3.453 0.228 3 A_DC3:DG22_B A 3 ? B 22 ? 19 1 1 A DA 5 1_555 B DT 8 1_555 0.251 -0.039 0.144 13.784 -23.893 4.066 4 A_DA5:DT20_B A 5 ? B 20 ? 20 1 1 A DA 6 1_555 B DT 7 1_555 0.064 -0.121 -0.004 -0.798 -28.887 3.218 5 A_DA6:DT19_B A 6 ? B 19 ? 20 1 1 A DT 7 1_555 B DA 6 1_555 0.107 -0.172 -0.009 -7.456 -27.097 9.020 6 A_DT7:DA18_B A 7 ? B 18 ? 20 1 1 A DT 8 1_555 B DA 5 1_555 -0.424 0.101 -0.161 -17.137 -26.477 1.135 7 A_DT8:DA17_B A 8 ? B 17 ? 20 1 1 A DG 10 1_555 B DC 3 1_555 -0.170 -0.213 -0.329 2.183 -2.665 -2.645 8 A_DG10:DC15_B A 10 ? B 15 ? 19 1 1 A DC 11 1_555 B DG 2 1_555 0.556 -0.217 0.440 16.938 -25.787 -6.026 9 A_DC11:DG14_B A 11 ? B 14 ? 19 1 1 A DG 12 1_555 B DC 1 1_555 -0.029 -0.172 0.032 3.919 7.130 -4.227 10 A_DG12:DC13_B A 12 ? B 13 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 12 1_555 A DG 2 1_555 B DC 11 1_555 -0.871 0.487 3.143 -5.490 2.819 35.556 0.393 0.639 3.265 4.574 8.908 36.070 1 AA_DC1DG2:DC23DG24_BB A 1 ? B 24 ? A 2 ? B 23 ? 1 A DG 2 1_555 B DC 11 1_555 A DC 3 1_555 B DG 10 1_555 1.191 0.221 3.271 8.144 -6.411 38.370 1.097 -0.773 3.366 -9.544 -12.124 39.694 2 AA_DG2DC3:DG22DC23_BB A 2 ? B 23 ? A 3 ? B 22 ? 1 A DC 3 1_555 B DG 10 1_555 A DA 5 1_555 B DT 8 1_555 -0.384 0.866 6.489 1.688 3.674 66.723 0.499 0.480 6.513 3.337 -1.534 66.831 3 AA_DC3DA5:DT20DG22_BB A 3 ? B 22 ? A 5 ? B 20 ? 1 A DA 5 1_555 B DT 8 1_555 A DA 6 1_555 B DT 7 1_555 -0.108 -0.115 3.492 -2.060 3.712 37.088 -0.703 -0.122 3.466 5.812 3.226 37.322 4 AA_DA5DA6:DT19DT20_BB A 5 ? B 20 ? A 6 ? B 19 ? 1 A DA 6 1_555 B DT 7 1_555 A DT 7 1_555 B DA 6 1_555 0.008 -0.585 3.280 1.333 6.762 33.600 -2.040 0.193 3.105 11.547 -2.277 34.279 5 AA_DA6DT7:DA18DT19_BB A 6 ? B 19 ? A 7 ? B 18 ? 1 A DT 7 1_555 B DA 6 1_555 A DT 8 1_555 B DA 5 1_555 -0.252 -0.184 3.436 1.311 4.102 34.774 -0.951 0.624 3.381 6.831 -2.183 35.032 6 AA_DT7DT8:DA17DA18_BB A 7 ? B 18 ? A 8 ? B 17 ? 1 A DT 8 1_555 B DA 5 1_555 A DG 10 1_555 B DC 3 1_555 -0.366 2.476 6.425 -4.966 3.858 65.481 1.968 -0.065 6.556 3.558 4.580 65.749 7 AA_DT8DG10:DC15DA17_BB A 8 ? B 17 ? A 10 ? B 15 ? 1 A DG 10 1_555 B DC 3 1_555 A DC 11 1_555 B DG 2 1_555 -0.891 1.183 3.012 -8.246 -8.018 44.916 2.129 0.491 2.883 -10.296 10.588 46.291 8 AA_DG10DC11:DG14DC15_BB A 10 ? B 15 ? A 11 ? B 14 ? 1 A DC 11 1_555 B DG 2 1_555 A DG 12 1_555 B DC 1 1_555 1.014 0.606 3.687 5.814 -6.275 37.224 1.828 -0.715 3.653 -9.674 -8.963 38.160 9 AA_DC11DG12:DC13DG14_BB A 11 ? B 14 ? A 12 ? B 13 ? # _atom_sites.entry_id 4IJ0 _atom_sites.fract_transf_matrix[1][1] 0.040650 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.024254 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015855 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P SR # loop_