data_4IJD # _entry.id 4IJD # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.287 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4IJD RCSB RCSB076825 WWPDB D_1000076825 # _pdbx_database_status.entry_id 4IJD _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2012-12-21 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Dong, A.' 1 'Dombrovski, L.' 2 'Li, Y.' 3 'Tempel, W.' 4 'Bountra, C.' 5 'Arrowsmith, C.H.' 6 'Edwards, A.M.' 7 'Brown, P.J.' 8 'Wu, H.' 9 'Structural Genomics Consortium (SGC)' 10 # _citation.id primary _citation.title 'Crystal structure of methyltransferase domain of human PR domain-containing protein 9' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Dombrovski, L.' 1 primary 'Dong, A.' 2 primary 'Li, Y.' 3 primary 'Tempel, W.' 4 primary 'Bountra, C.' 5 primary 'Arrowsmith, C.H.' 6 primary 'Edwards, A.M.' 7 primary 'Brown, P.J.' 8 primary 'Wu, H.' 9 primary 'Structural Genomics Consortium (SGC)' 10 # _cell.entry_id 4IJD _cell.length_a 54.734 _cell.length_b 48.782 _cell.length_c 78.713 _cell.angle_alpha 90.00 _cell.angle_beta 100.05 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4IJD _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Histone-lysine N-methyltransferase PRDM9' 25344.838 2 2.1.1.43 ? 'UNP residues 195-415' ? 2 non-polymer syn 'ZINC ION' 65.409 4 ? ? ? ? 3 non-polymer syn 'UNKNOWN ATOM OR ION' ? 24 ? ? ? ? 4 water nat water 18.015 59 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'PR domain zinc finger protein 9, PR domain-containing protein 9' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;SEPQDDDYLYCE(MSE)CQNFFIDSCAAHGPPTFVKDSAVDKGHPNRSALSLPPGLRIGPSGIPQAGLGVWNEASDLPLG LHFGPYEGRITEDEEAANNGYSWLITKGRNCYEYVDGKDKSWANW(MSE)RYVNCARDDEEQNLVAFQYHRQIFYRTCRV IRPGCELLVWYGDEYGQELGIKWGSKWKKEL(MSE)AGREPKPEIHPCPSCCLAFSSQKFLSQHVERNHSSQN ; _entity_poly.pdbx_seq_one_letter_code_can ;SEPQDDDYLYCEMCQNFFIDSCAAHGPPTFVKDSAVDKGHPNRSALSLPPGLRIGPSGIPQAGLGVWNEASDLPLGLHFG PYEGRITEDEEAANNGYSWLITKGRNCYEYVDGKDKSWANWMRYVNCARDDEEQNLVAFQYHRQIFYRTCRVIRPGCELL VWYGDEYGQELGIKWGSKWKKELMAGREPKPEIHPCPSCCLAFSSQKFLSQHVERNHSSQN ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 GLU n 1 3 PRO n 1 4 GLN n 1 5 ASP n 1 6 ASP n 1 7 ASP n 1 8 TYR n 1 9 LEU n 1 10 TYR n 1 11 CYS n 1 12 GLU n 1 13 MSE n 1 14 CYS n 1 15 GLN n 1 16 ASN n 1 17 PHE n 1 18 PHE n 1 19 ILE n 1 20 ASP n 1 21 SER n 1 22 CYS n 1 23 ALA n 1 24 ALA n 1 25 HIS n 1 26 GLY n 1 27 PRO n 1 28 PRO n 1 29 THR n 1 30 PHE n 1 31 VAL n 1 32 LYS n 1 33 ASP n 1 34 SER n 1 35 ALA n 1 36 VAL n 1 37 ASP n 1 38 LYS n 1 39 GLY n 1 40 HIS n 1 41 PRO n 1 42 ASN n 1 43 ARG n 1 44 SER n 1 45 ALA n 1 46 LEU n 1 47 SER n 1 48 LEU n 1 49 PRO n 1 50 PRO n 1 51 GLY n 1 52 LEU n 1 53 ARG n 1 54 ILE n 1 55 GLY n 1 56 PRO n 1 57 SER n 1 58 GLY n 1 59 ILE n 1 60 PRO n 1 61 GLN n 1 62 ALA n 1 63 GLY n 1 64 LEU n 1 65 GLY n 1 66 VAL n 1 67 TRP n 1 68 ASN n 1 69 GLU n 1 70 ALA n 1 71 SER n 1 72 ASP n 1 73 LEU n 1 74 PRO n 1 75 LEU n 1 76 GLY n 1 77 LEU n 1 78 HIS n 1 79 PHE n 1 80 GLY n 1 81 PRO n 1 82 TYR n 1 83 GLU n 1 84 GLY n 1 85 ARG n 1 86 ILE n 1 87 THR n 1 88 GLU n 1 89 ASP n 1 90 GLU n 1 91 GLU n 1 92 ALA n 1 93 ALA n 1 94 ASN n 1 95 ASN n 1 96 GLY n 1 97 TYR n 1 98 SER n 1 99 TRP n 1 100 LEU n 1 101 ILE n 1 102 THR n 1 103 LYS n 1 104 GLY n 1 105 ARG n 1 106 ASN n 1 107 CYS n 1 108 TYR n 1 109 GLU n 1 110 TYR n 1 111 VAL n 1 112 ASP n 1 113 GLY n 1 114 LYS n 1 115 ASP n 1 116 LYS n 1 117 SER n 1 118 TRP n 1 119 ALA n 1 120 ASN n 1 121 TRP n 1 122 MSE n 1 123 ARG n 1 124 TYR n 1 125 VAL n 1 126 ASN n 1 127 CYS n 1 128 ALA n 1 129 ARG n 1 130 ASP n 1 131 ASP n 1 132 GLU n 1 133 GLU n 1 134 GLN n 1 135 ASN n 1 136 LEU n 1 137 VAL n 1 138 ALA n 1 139 PHE n 1 140 GLN n 1 141 TYR n 1 142 HIS n 1 143 ARG n 1 144 GLN n 1 145 ILE n 1 146 PHE n 1 147 TYR n 1 148 ARG n 1 149 THR n 1 150 CYS n 1 151 ARG n 1 152 VAL n 1 153 ILE n 1 154 ARG n 1 155 PRO n 1 156 GLY n 1 157 CYS n 1 158 GLU n 1 159 LEU n 1 160 LEU n 1 161 VAL n 1 162 TRP n 1 163 TYR n 1 164 GLY n 1 165 ASP n 1 166 GLU n 1 167 TYR n 1 168 GLY n 1 169 GLN n 1 170 GLU n 1 171 LEU n 1 172 GLY n 1 173 ILE n 1 174 LYS n 1 175 TRP n 1 176 GLY n 1 177 SER n 1 178 LYS n 1 179 TRP n 1 180 LYS n 1 181 LYS n 1 182 GLU n 1 183 LEU n 1 184 MSE n 1 185 ALA n 1 186 GLY n 1 187 ARG n 1 188 GLU n 1 189 PRO n 1 190 LYS n 1 191 PRO n 1 192 GLU n 1 193 ILE n 1 194 HIS n 1 195 PRO n 1 196 CYS n 1 197 PRO n 1 198 SER n 1 199 CYS n 1 200 CYS n 1 201 LEU n 1 202 ALA n 1 203 PHE n 1 204 SER n 1 205 SER n 1 206 GLN n 1 207 LYS n 1 208 PHE n 1 209 LEU n 1 210 SER n 1 211 GLN n 1 212 HIS n 1 213 VAL n 1 214 GLU n 1 215 ARG n 1 216 ASN n 1 217 HIS n 1 218 SER n 1 219 SER n 1 220 GLN n 1 221 ASN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'PRDM9, PFM6' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 511693 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain BL21 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET28-MHL _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code PRDM9_HUMAN _struct_ref.pdbx_db_accession Q9NQV7 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;SEPQDDDYLYCEMCQNFFIDSCAAHGPPTFVKDSAVDKGHPNRSALSLPPGLRIGPSGIPQAGLGVWNEASDLPLGLHFG PYEGRITEDEEAANNGYSWLITKGRNCYEYVDGKDKSWANWMRYVNCARDDEEQNLVAFQYHRQIFYRTCRVIRPGCELL VWYGDEYGQELGIKWGSKWKKELMAGREPKPEIHPCPSCCLAFSSQKFLSQHVERNHSSQN ; _struct_ref.pdbx_align_begin 195 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4IJD A 1 ? 221 ? Q9NQV7 195 ? 415 ? 195 415 2 1 4IJD B 1 ? 221 ? Q9NQV7 195 ? 415 ? 195 415 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 UNX non-polymer . 'UNKNOWN ATOM OR ION' ? ? ? VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # _exptl.crystals_number 1 _exptl.entry_id 4IJD _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.04 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 39.74 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 5.5 _exptl_crystal_grow.temp 291 _exptl_crystal_grow.pdbx_details '23% PEG 3350, 0.2 M AMMONIUM ACETATE, 0.1 M BisTris pH5.5, vapor diffusion hanging drop, temperature 291K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.pdbx_collection_date 2012-11-23 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97912 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-ID' _diffrn_source.pdbx_wavelength_list 0.97912 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-ID # _reflns.entry_id 4IJD _reflns.d_resolution_high 2.15 _reflns.d_resolution_low 50.000 _reflns.number_obs 21804 _reflns.pdbx_Rmerge_I_obs 0.093 _reflns.pdbx_netI_over_sigmaI 31.1 _reflns.pdbx_chi_squared 2.565 _reflns.pdbx_redundancy 6.300 _reflns.percent_possible_obs 99.900 _reflns.observed_criterion_sigma_F 0 _reflns.observed_criterion_sigma_I 0 _reflns.number_all 21804 _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate 39.1 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2.15 2.200 ? ? ? 0.804 ? ? 1.015 5.200 ? 1089 99.700 1 1 2.200 2.240 ? ? ? 0.769 ? ? 0.991 5.700 ? 1050 100.000 2 1 2.240 2.280 ? ? ? 0.782 ? ? 1.059 6.000 ? 1103 99.900 3 1 2.280 2.330 ? ? ? 0.614 ? ? 1.029 6.200 ? 1076 100.000 4 1 2.330 2.380 ? ? ? 0.515 ? ? 1.070 6.300 ? 1081 100.000 5 1 2.380 2.430 ? ? ? 0.421 ? ? 1.139 6.400 ? 1093 100.000 6 1 2.430 2.490 ? ? ? 0.400 ? ? 1.122 6.400 ? 1071 100.000 7 1 2.490 2.560 ? ? ? 0.346 ? ? 1.173 6.400 ? 1080 100.000 8 1 2.560 2.640 ? ? ? 0.282 ? ? 1.217 6.500 ? 1077 100.000 9 1 2.640 2.720 ? ? ? 0.229 ? ? 1.327 6.500 ? 1107 100.000 10 1 2.720 2.820 ? ? ? 0.187 ? ? 1.440 6.500 ? 1075 100.000 11 1 2.820 2.930 ? ? ? 0.155 ? ? 1.559 6.600 ? 1074 100.000 12 1 2.930 3.060 ? ? ? 0.116 ? ? 1.852 6.600 ? 1083 100.000 13 1 3.060 3.230 ? ? ? 0.099 ? ? 2.291 6.500 ? 1099 100.000 14 1 3.230 3.430 ? ? ? 0.081 ? ? 2.889 6.500 ? 1110 100.000 15 1 3.430 3.690 ? ? ? 0.073 ? ? 3.628 6.400 ? 1084 100.000 16 1 3.690 4.060 ? ? ? 0.065 ? ? 4.313 6.300 ? 1095 100.000 17 1 4.060 4.650 ? ? ? 0.059 ? ? 4.899 6.200 ? 1099 99.900 18 1 4.650 5.860 ? ? ? 0.063 ? ? 6.093 6.100 ? 1110 99.900 19 1 5.860 50.000 ? ? ? 0.066 ? ? 10.731 6.100 ? 1148 99.000 20 1 # _refine.entry_id 4IJD _refine.ls_d_res_high 2.1500 _refine.ls_d_res_low 36.1900 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.9 _refine.ls_number_reflns_obs 21794 _refine.ls_number_reflns_all 21794 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : WITH TLS ADDED' _refine.ls_R_factor_all 0.1991 _refine.ls_R_factor_obs 0.1991 _refine.ls_R_factor_R_work 0.1964 _refine.ls_wR_factor_R_work 0.1916 _refine.ls_R_factor_R_free 0.2640 _refine.ls_wR_factor_R_free 0.2603 _refine.ls_percent_reflns_R_free 4.2000 _refine.ls_number_reflns_R_free 911 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 50.9656 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 0.4500 _refine.aniso_B[2][2] 0.5600 _refine.aniso_B[3][3] -1.1300 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] -0.3500 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9560 _refine.correlation_coeff_Fo_to_Fc_free 0.9190 _refine.overall_SU_R_Cruickshank_DPI 0.2900 _refine.overall_SU_R_free 0.2333 _refine.pdbx_overall_ESU_R 0.2900 _refine.pdbx_overall_ESU_R_Free 0.2330 _refine.overall_SU_ML 0.1640 _refine.overall_SU_B 13.1230 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.2000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set 0.8295 _refine.B_iso_max 119.000 _refine.B_iso_min 25.810 _refine.pdbx_overall_phase_error ? _refine.occupancy_max 1.000 _refine.occupancy_min 0.400 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 3275 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 28 _refine_hist.number_atoms_solvent 59 _refine_hist.number_atoms_total 3362 _refine_hist.d_res_high 2.1500 _refine_hist.d_res_low 36.1900 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 3413 0.011 0.020 ? ? 'X-RAY DIFFRACTION' r_bond_other_d 2913 0.001 0.020 ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 4650 1.195 1.939 ? ? 'X-RAY DIFFRACTION' r_angle_other_deg 6668 0.719 3.004 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 431 6.840 5.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 158 32.447 23.734 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 435 13.188 15.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 17 13.537 15.000 ? ? 'X-RAY DIFFRACTION' r_chiral_restr 467 0.070 0.200 ? ? 'X-RAY DIFFRACTION' r_gen_planes_refined 4000 0.007 0.021 ? ? 'X-RAY DIFFRACTION' r_gen_planes_other 839 0.001 0.020 ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.d_res_high 2.1520 _refine_ls_shell.d_res_low 2.2080 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 60.5400 _refine_ls_shell.number_reflns_R_work 951 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.2310 _refine_ls_shell.R_factor_R_free 0.3370 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 40 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 991 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 4IJD _struct.title 'Crystal structure of methyltransferase domain of human PR domain-containing protein 9' _struct.pdbx_descriptor 'Histone-lysine N-methyltransferase PRDM9 (E.C.2.1.1.43)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4IJD _struct_keywords.text 'PRDM9, Methyltransferase, Structural Genomics, Structural Genomics Consortium, SGC, TRANSFERASE' _struct_keywords.pdbx_keywords TRANSFERASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 3 ? I N N 3 ? J N N 3 ? K N N 3 ? L N N 3 ? M N N 3 ? N N N 3 ? O N N 3 ? P N N 3 ? Q N N 3 ? R N N 3 ? S N N 3 ? T N N 3 ? U N N 2 ? V N N 2 ? W N N 3 ? X N N 3 ? Y N N 3 ? Z N N 3 ? AA N N 3 ? BA N N 3 ? CA N N 3 ? DA N N 3 ? EA N N 4 ? FA N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLN A 4 ? TYR A 8 ? GLN A 198 TYR A 202 5 ? 5 HELX_P HELX_P2 2 ASN A 42 ? SER A 47 ? ASN A 236 SER A 241 1 ? 6 HELX_P HELX_P3 3 ASP A 89 ? ALA A 93 ? ASP A 283 ALA A 287 5 ? 5 HELX_P HELX_P4 4 ASN A 120 ? VAL A 125 ? ASN A 314 VAL A 319 5 ? 6 HELX_P HELX_P5 5 TYR A 167 ? LYS A 174 ? TYR A 361 LYS A 368 1 ? 8 HELX_P HELX_P6 6 LYS A 178 ? MSE A 184 ? LYS A 372 MSE A 378 1 ? 7 HELX_P HELX_P7 7 SER A 205 ? HIS A 217 ? SER A 399 HIS A 411 1 ? 13 HELX_P HELX_P8 8 GLN B 4 ? TYR B 8 ? GLN B 198 TYR B 202 5 ? 5 HELX_P HELX_P9 9 ASN B 42 ? LEU B 48 ? ASN B 236 LEU B 242 1 ? 7 HELX_P HELX_P10 10 ASP B 89 ? ALA B 93 ? ASP B 283 ALA B 287 5 ? 5 HELX_P HELX_P11 11 ASP B 115 ? ALA B 119 ? ASP B 309 ALA B 313 5 ? 5 HELX_P HELX_P12 12 ASN B 120 ? VAL B 125 ? ASN B 314 VAL B 319 5 ? 6 HELX_P HELX_P13 13 TYR B 167 ? LYS B 174 ? TYR B 361 LYS B 368 1 ? 8 HELX_P HELX_P14 14 LYS B 178 ? MSE B 184 ? LYS B 372 MSE B 378 1 ? 7 HELX_P HELX_P15 15 SER B 205 ? HIS B 217 ? SER B 399 HIS B 411 1 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 157 SG ? ? ? 1_555 A CYS 200 SG ? ? A CYS 351 A CYS 394 1_555 ? ? ? ? ? ? ? 2.070 ? disulf2 disulf ? ? B CYS 157 SG ? ? ? 1_555 B CYS 200 SG ? ? B CYS 351 B CYS 394 1_555 ? ? ? ? ? ? ? 2.053 ? covale1 covale ? ? A GLU 12 C ? ? ? 1_555 A MSE 13 N ? ? A GLU 206 A MSE 207 1_555 ? ? ? ? ? ? ? 1.329 ? covale2 covale ? ? A MSE 13 C ? ? ? 1_555 A CYS 14 N ? ? A MSE 207 A CYS 208 1_555 ? ? ? ? ? ? ? 1.340 ? covale3 covale ? ? A TRP 121 C ? ? ? 1_555 A MSE 122 N ? ? A TRP 315 A MSE 316 1_555 ? ? ? ? ? ? ? 1.326 ? covale4 covale ? ? A MSE 122 C ? ? ? 1_555 A ARG 123 N ? ? A MSE 316 A ARG 317 1_555 ? ? ? ? ? ? ? 1.336 ? covale5 covale ? ? A LEU 183 C ? ? ? 1_555 A MSE 184 N ? ? A LEU 377 A MSE 378 1_555 ? ? ? ? ? ? ? 1.333 ? covale6 covale ? ? B GLU 12 C ? ? ? 1_555 B MSE 13 N ? ? B GLU 206 B MSE 207 1_555 ? ? ? ? ? ? ? 1.329 ? covale7 covale ? ? B MSE 13 C ? ? ? 1_555 B CYS 14 N ? ? B MSE 207 B CYS 208 1_555 ? ? ? ? ? ? ? 1.331 ? covale8 covale ? ? B TRP 121 C ? ? ? 1_555 B MSE 122 N ? ? B TRP 315 B MSE 316 1_555 ? ? ? ? ? ? ? 1.325 ? covale9 covale ? ? B MSE 122 C ? ? ? 1_555 B ARG 123 N ? ? B MSE 316 B ARG 317 1_555 ? ? ? ? ? ? ? 1.329 ? covale10 covale ? ? B LEU 183 C ? ? ? 1_555 B MSE 184 N ? ? B LEU 377 B MSE 378 1_555 ? ? ? ? ? ? ? 1.340 ? metalc1 metalc ? ? A HIS 212 NE2 ? ? ? 1_555 D ZN . ZN ? ? A HIS 406 A ZN 502 1_555 ? ? ? ? ? ? ? 2.118 ? metalc2 metalc ? ? A HIS 217 NE2 ? ? ? 1_555 D ZN . ZN ? ? A HIS 411 A ZN 502 1_555 ? ? ? ? ? ? ? 2.118 ? metalc3 metalc ? ? B HIS 212 NE2 ? ? ? 1_555 V ZN . ZN ? ? B HIS 406 B ZN 502 1_555 ? ? ? ? ? ? ? 2.122 ? metalc4 metalc ? ? B HIS 25 ND1 ? ? ? 1_555 U ZN . ZN ? ? B HIS 219 B ZN 501 1_555 ? ? ? ? ? ? ? 2.156 ? metalc5 metalc ? ? A HIS 25 ND1 ? ? ? 1_555 C ZN . ZN ? ? A HIS 219 A ZN 501 1_555 ? ? ? ? ? ? ? 2.158 ? metalc6 metalc ? ? B HIS 217 NE2 ? ? ? 1_555 V ZN . ZN ? ? B HIS 411 B ZN 502 1_555 ? ? ? ? ? ? ? 2.168 ? metalc7 metalc ? ? A CYS 11 SG ? ? ? 1_555 C ZN . ZN ? ? A CYS 205 A ZN 501 1_555 ? ? ? ? ? ? ? 2.257 ? metalc8 metalc ? ? A CYS 199 SG ? ? ? 1_555 D ZN . ZN ? ? A CYS 393 A ZN 502 1_555 ? ? ? ? ? ? ? 2.276 ? metalc9 metalc ? ? A CYS 196 SG ? ? ? 1_555 D ZN . ZN ? ? A CYS 390 A ZN 502 1_555 ? ? ? ? ? ? ? 2.293 ? metalc10 metalc ? ? B CYS 11 SG ? ? ? 1_555 U ZN . ZN ? ? B CYS 205 B ZN 501 1_555 ? ? ? ? ? ? ? 2.298 ? metalc11 metalc ? ? A CYS 22 SG ? ? ? 1_555 C ZN . ZN ? ? A CYS 216 A ZN 501 1_555 ? ? ? ? ? ? ? 2.303 ? metalc12 metalc ? ? B CYS 196 SG ? ? ? 1_555 V ZN . ZN ? ? B CYS 390 B ZN 502 1_555 ? ? ? ? ? ? ? 2.329 ? metalc13 metalc ? ? B CYS 199 SG ? ? ? 1_555 V ZN . ZN ? ? B CYS 393 B ZN 502 1_555 ? ? ? ? ? ? ? 2.330 ? metalc14 metalc ? ? A CYS 14 SG ? ? ? 1_555 C ZN . ZN ? ? A CYS 208 A ZN 501 1_555 ? ? ? ? ? ? ? 2.353 ? metalc15 metalc ? ? B CYS 22 SG ? ? ? 1_555 U ZN . ZN ? ? B CYS 216 B ZN 501 1_555 ? ? ? ? ? ? ? 2.356 ? metalc16 metalc ? ? B CYS 14 SG ? ? ? 1_555 U ZN . ZN ? ? B CYS 208 B ZN 501 1_555 ? ? ? ? ? ? ? 2.361 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? metalc ? ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 GLY 80 A . ? GLY 274 A PRO 81 A ? PRO 275 A 1 7.41 2 GLY 80 B . ? GLY 274 B PRO 81 B ? PRO 275 B 1 5.39 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 6 ? C ? 2 ? D ? 3 ? E ? 2 ? F ? 2 ? G ? 6 ? H ? 2 ? I ? 3 ? J ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? parallel B 5 6 ? parallel C 1 2 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel E 1 2 ? anti-parallel F 1 2 ? anti-parallel G 1 2 ? parallel G 2 3 ? anti-parallel G 3 4 ? anti-parallel G 4 5 ? parallel G 5 6 ? parallel H 1 2 ? anti-parallel I 1 2 ? anti-parallel I 2 3 ? anti-parallel J 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LEU A 9 ? CYS A 11 ? LEU A 203 CYS A 205 A 2 ASN A 16 ? PHE A 18 ? ASN A 210 PHE A 212 B 1 PHE A 30 ? VAL A 31 ? PHE A 224 VAL A 225 B 2 HIS A 78 ? PHE A 79 ? HIS A 272 PHE A 273 B 3 GLN A 144 ? THR A 149 ? GLN A 338 THR A 343 B 4 LEU A 136 ? TYR A 141 ? LEU A 330 TYR A 335 B 5 LEU A 160 ? TRP A 162 ? LEU A 354 TRP A 356 B 6 ASN A 126 ? CYS A 127 ? ASN A 320 CYS A 321 C 1 LEU A 52 ? PRO A 56 ? LEU A 246 PRO A 250 C 2 LEU A 64 ? ASN A 68 ? LEU A 258 ASN A 262 D 1 ARG A 85 ? THR A 87 ? ARG A 279 THR A 281 D 2 CYS A 107 ? ASP A 112 ? CYS A 301 ASP A 306 D 3 SER A 98 ? GLY A 104 ? SER A 292 GLY A 298 E 1 HIS A 194 ? PRO A 195 ? HIS A 388 PRO A 389 E 2 ALA A 202 ? PHE A 203 ? ALA A 396 PHE A 397 F 1 LEU B 9 ? CYS B 11 ? LEU B 203 CYS B 205 F 2 ASN B 16 ? PHE B 18 ? ASN B 210 PHE B 212 G 1 PHE B 30 ? VAL B 31 ? PHE B 224 VAL B 225 G 2 HIS B 78 ? PHE B 79 ? HIS B 272 PHE B 273 G 3 GLN B 144 ? THR B 149 ? GLN B 338 THR B 343 G 4 LEU B 136 ? TYR B 141 ? LEU B 330 TYR B 335 G 5 LEU B 160 ? TRP B 162 ? LEU B 354 TRP B 356 G 6 ASN B 126 ? CYS B 127 ? ASN B 320 CYS B 321 H 1 LEU B 52 ? PRO B 56 ? LEU B 246 PRO B 250 H 2 LEU B 64 ? ASN B 68 ? LEU B 258 ASN B 262 I 1 ARG B 85 ? THR B 87 ? ARG B 279 THR B 281 I 2 TYR B 108 ? ASP B 112 ? TYR B 302 ASP B 306 I 3 SER B 98 ? THR B 102 ? SER B 292 THR B 296 J 1 HIS B 194 ? PRO B 195 ? HIS B 388 PRO B 389 J 2 ALA B 202 ? PHE B 203 ? ALA B 396 PHE B 397 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N CYS A 11 ? N CYS A 205 O ASN A 16 ? O ASN A 210 B 1 2 N VAL A 31 ? N VAL A 225 O HIS A 78 ? O HIS A 272 B 2 3 N PHE A 79 ? N PHE A 273 O TYR A 147 ? O TYR A 341 B 3 4 O GLN A 144 ? O GLN A 338 N TYR A 141 ? N TYR A 335 B 4 5 N ALA A 138 ? N ALA A 332 O TRP A 162 ? O TRP A 356 B 5 6 O VAL A 161 ? O VAL A 355 N ASN A 126 ? N ASN A 320 C 1 2 N ARG A 53 ? N ARG A 247 O TRP A 67 ? O TRP A 261 D 1 2 N ARG A 85 ? N ARG A 279 O ASP A 112 ? O ASP A 306 D 2 3 O GLU A 109 ? O GLU A 303 N ILE A 101 ? N ILE A 295 E 1 2 N HIS A 194 ? N HIS A 388 O PHE A 203 ? O PHE A 397 F 1 2 N CYS B 11 ? N CYS B 205 O ASN B 16 ? O ASN B 210 G 1 2 N VAL B 31 ? N VAL B 225 O HIS B 78 ? O HIS B 272 G 2 3 N PHE B 79 ? N PHE B 273 O TYR B 147 ? O TYR B 341 G 3 4 O GLN B 144 ? O GLN B 338 N TYR B 141 ? N TYR B 335 G 4 5 N ALA B 138 ? N ALA B 332 O TRP B 162 ? O TRP B 356 G 5 6 O VAL B 161 ? O VAL B 355 N ASN B 126 ? N ASN B 320 H 1 2 N ARG B 53 ? N ARG B 247 O TRP B 67 ? O TRP B 261 I 1 2 N THR B 87 ? N THR B 281 O TYR B 110 ? O TYR B 304 I 2 3 O GLU B 109 ? O GLU B 303 N ILE B 101 ? N ILE B 295 J 1 2 N HIS B 194 ? N HIS B 388 O PHE B 203 ? O PHE B 397 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE ZN A 501' AC2 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE ZN A 502' AC3 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE ZN B 501' AC4 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE ZN B 502' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 CYS A 11 ? CYS A 205 . ? 1_555 ? 2 AC1 4 CYS A 14 ? CYS A 208 . ? 1_555 ? 3 AC1 4 CYS A 22 ? CYS A 216 . ? 1_555 ? 4 AC1 4 HIS A 25 ? HIS A 219 . ? 1_555 ? 5 AC2 4 CYS A 196 ? CYS A 390 . ? 1_555 ? 6 AC2 4 CYS A 199 ? CYS A 393 . ? 1_555 ? 7 AC2 4 HIS A 212 ? HIS A 406 . ? 1_555 ? 8 AC2 4 HIS A 217 ? HIS A 411 . ? 1_555 ? 9 AC3 4 CYS B 11 ? CYS B 205 . ? 1_555 ? 10 AC3 4 CYS B 14 ? CYS B 208 . ? 1_555 ? 11 AC3 4 CYS B 22 ? CYS B 216 . ? 1_555 ? 12 AC3 4 HIS B 25 ? HIS B 219 . ? 1_555 ? 13 AC4 4 CYS B 196 ? CYS B 390 . ? 1_555 ? 14 AC4 4 CYS B 199 ? CYS B 393 . ? 1_555 ? 15 AC4 4 HIS B 212 ? HIS B 406 . ? 1_555 ? 16 AC4 4 HIS B 217 ? HIS B 411 . ? 1_555 ? # _atom_sites.entry_id 4IJD _atom_sites.fract_transf_matrix[1][1] 0.018270 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.003238 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.020499 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012902 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE X ZN # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 195 195 SER SER A . n A 1 2 GLU 2 196 196 GLU GLU A . n A 1 3 PRO 3 197 197 PRO PRO A . n A 1 4 GLN 4 198 198 GLN GLN A . n A 1 5 ASP 5 199 199 ASP ASP A . n A 1 6 ASP 6 200 200 ASP ASP A . n A 1 7 ASP 7 201 201 ASP ASP A . n A 1 8 TYR 8 202 202 TYR TYR A . n A 1 9 LEU 9 203 203 LEU LEU A . n A 1 10 TYR 10 204 204 TYR TYR A . n A 1 11 CYS 11 205 205 CYS CYS A . n A 1 12 GLU 12 206 206 GLU GLU A . n A 1 13 MSE 13 207 207 MSE MSE A . n A 1 14 CYS 14 208 208 CYS CYS A . n A 1 15 GLN 15 209 209 GLN GLN A . n A 1 16 ASN 16 210 210 ASN ASN A . n A 1 17 PHE 17 211 211 PHE PHE A . n A 1 18 PHE 18 212 212 PHE PHE A . n A 1 19 ILE 19 213 213 ILE ILE A . n A 1 20 ASP 20 214 214 ASP ASP A . n A 1 21 SER 21 215 215 SER SER A . n A 1 22 CYS 22 216 216 CYS CYS A . n A 1 23 ALA 23 217 217 ALA ALA A . n A 1 24 ALA 24 218 218 ALA ALA A . n A 1 25 HIS 25 219 219 HIS HIS A . n A 1 26 GLY 26 220 220 GLY GLY A . n A 1 27 PRO 27 221 221 PRO PRO A . n A 1 28 PRO 28 222 222 PRO PRO A . n A 1 29 THR 29 223 223 THR THR A . n A 1 30 PHE 30 224 224 PHE PHE A . n A 1 31 VAL 31 225 225 VAL VAL A . n A 1 32 LYS 32 226 226 LYS LYS A . n A 1 33 ASP 33 227 227 ASP ASP A . n A 1 34 SER 34 228 228 SER SER A . n A 1 35 ALA 35 229 229 ALA ALA A . n A 1 36 VAL 36 230 230 VAL VAL A . n A 1 37 ASP 37 231 231 ASP ASP A . n A 1 38 LYS 38 232 232 LYS LYS A . n A 1 39 GLY 39 233 233 GLY GLY A . n A 1 40 HIS 40 234 234 HIS HIS A . n A 1 41 PRO 41 235 235 PRO PRO A . n A 1 42 ASN 42 236 236 ASN ASN A . n A 1 43 ARG 43 237 237 ARG ARG A . n A 1 44 SER 44 238 238 SER SER A . n A 1 45 ALA 45 239 239 ALA ALA A . n A 1 46 LEU 46 240 240 LEU LEU A . n A 1 47 SER 47 241 241 SER SER A . n A 1 48 LEU 48 242 242 LEU LEU A . n A 1 49 PRO 49 243 243 PRO PRO A . n A 1 50 PRO 50 244 244 PRO PRO A . n A 1 51 GLY 51 245 245 GLY GLY A . n A 1 52 LEU 52 246 246 LEU LEU A . n A 1 53 ARG 53 247 247 ARG ARG A . n A 1 54 ILE 54 248 248 ILE ILE A . n A 1 55 GLY 55 249 249 GLY GLY A . n A 1 56 PRO 56 250 250 PRO PRO A . n A 1 57 SER 57 251 251 SER SER A . n A 1 58 GLY 58 252 252 GLY GLY A . n A 1 59 ILE 59 253 253 ILE ILE A . n A 1 60 PRO 60 254 254 PRO PRO A . n A 1 61 GLN 61 255 255 GLN GLN A . n A 1 62 ALA 62 256 256 ALA ALA A . n A 1 63 GLY 63 257 257 GLY GLY A . n A 1 64 LEU 64 258 258 LEU LEU A . n A 1 65 GLY 65 259 259 GLY GLY A . n A 1 66 VAL 66 260 260 VAL VAL A . n A 1 67 TRP 67 261 261 TRP TRP A . n A 1 68 ASN 68 262 262 ASN ASN A . n A 1 69 GLU 69 263 263 GLU GLU A . n A 1 70 ALA 70 264 264 ALA ALA A . n A 1 71 SER 71 265 265 SER SER A . n A 1 72 ASP 72 266 266 ASP ASP A . n A 1 73 LEU 73 267 267 LEU LEU A . n A 1 74 PRO 74 268 268 PRO PRO A . n A 1 75 LEU 75 269 269 LEU LEU A . n A 1 76 GLY 76 270 270 GLY GLY A . n A 1 77 LEU 77 271 271 LEU LEU A . n A 1 78 HIS 78 272 272 HIS HIS A . n A 1 79 PHE 79 273 273 PHE PHE A . n A 1 80 GLY 80 274 274 GLY GLY A . n A 1 81 PRO 81 275 275 PRO PRO A . n A 1 82 TYR 82 276 276 TYR TYR A . n A 1 83 GLU 83 277 277 GLU GLU A . n A 1 84 GLY 84 278 278 GLY GLY A . n A 1 85 ARG 85 279 279 ARG ARG A . n A 1 86 ILE 86 280 280 ILE ILE A . n A 1 87 THR 87 281 281 THR THR A . n A 1 88 GLU 88 282 282 GLU GLU A . n A 1 89 ASP 89 283 283 ASP ASP A . n A 1 90 GLU 90 284 284 GLU GLU A . n A 1 91 GLU 91 285 285 GLU GLU A . n A 1 92 ALA 92 286 286 ALA ALA A . n A 1 93 ALA 93 287 287 ALA ALA A . n A 1 94 ASN 94 288 288 ASN ASN A . n A 1 95 ASN 95 289 289 ASN ASN A . n A 1 96 GLY 96 290 290 GLY GLY A . n A 1 97 TYR 97 291 291 TYR TYR A . n A 1 98 SER 98 292 292 SER SER A . n A 1 99 TRP 99 293 293 TRP TRP A . n A 1 100 LEU 100 294 294 LEU LEU A . n A 1 101 ILE 101 295 295 ILE ILE A . n A 1 102 THR 102 296 296 THR THR A . n A 1 103 LYS 103 297 297 LYS LYS A . n A 1 104 GLY 104 298 298 GLY GLY A . n A 1 105 ARG 105 299 299 ARG ARG A . n A 1 106 ASN 106 300 300 ASN ASN A . n A 1 107 CYS 107 301 301 CYS CYS A . n A 1 108 TYR 108 302 302 TYR TYR A . n A 1 109 GLU 109 303 303 GLU GLU A . n A 1 110 TYR 110 304 304 TYR TYR A . n A 1 111 VAL 111 305 305 VAL VAL A . n A 1 112 ASP 112 306 306 ASP ASP A . n A 1 113 GLY 113 307 307 GLY GLY A . n A 1 114 LYS 114 308 308 LYS LYS A . n A 1 115 ASP 115 309 309 ASP ASP A . n A 1 116 LYS 116 310 310 LYS LYS A . n A 1 117 SER 117 311 311 SER SER A . n A 1 118 TRP 118 312 312 TRP TRP A . n A 1 119 ALA 119 313 313 ALA ALA A . n A 1 120 ASN 120 314 314 ASN ASN A . n A 1 121 TRP 121 315 315 TRP TRP A . n A 1 122 MSE 122 316 316 MSE MSE A . n A 1 123 ARG 123 317 317 ARG ARG A . n A 1 124 TYR 124 318 318 TYR TYR A . n A 1 125 VAL 125 319 319 VAL VAL A . n A 1 126 ASN 126 320 320 ASN ASN A . n A 1 127 CYS 127 321 321 CYS CYS A . n A 1 128 ALA 128 322 322 ALA ALA A . n A 1 129 ARG 129 323 323 ARG ARG A . n A 1 130 ASP 130 324 324 ASP ASP A . n A 1 131 ASP 131 325 325 ASP ASP A . n A 1 132 GLU 132 326 326 GLU GLU A . n A 1 133 GLU 133 327 327 GLU GLU A . n A 1 134 GLN 134 328 328 GLN GLN A . n A 1 135 ASN 135 329 329 ASN ASN A . n A 1 136 LEU 136 330 330 LEU LEU A . n A 1 137 VAL 137 331 331 VAL VAL A . n A 1 138 ALA 138 332 332 ALA ALA A . n A 1 139 PHE 139 333 333 PHE PHE A . n A 1 140 GLN 140 334 334 GLN GLN A . n A 1 141 TYR 141 335 335 TYR TYR A . n A 1 142 HIS 142 336 336 HIS HIS A . n A 1 143 ARG 143 337 337 ARG ARG A . n A 1 144 GLN 144 338 338 GLN GLN A . n A 1 145 ILE 145 339 339 ILE ILE A . n A 1 146 PHE 146 340 340 PHE PHE A . n A 1 147 TYR 147 341 341 TYR TYR A . n A 1 148 ARG 148 342 342 ARG ARG A . n A 1 149 THR 149 343 343 THR THR A . n A 1 150 CYS 150 344 344 CYS CYS A . n A 1 151 ARG 151 345 345 ARG ARG A . n A 1 152 VAL 152 346 346 VAL VAL A . n A 1 153 ILE 153 347 347 ILE ILE A . n A 1 154 ARG 154 348 348 ARG ARG A . n A 1 155 PRO 155 349 349 PRO PRO A . n A 1 156 GLY 156 350 350 GLY GLY A . n A 1 157 CYS 157 351 351 CYS CYS A . n A 1 158 GLU 158 352 352 GLU GLU A . n A 1 159 LEU 159 353 353 LEU LEU A . n A 1 160 LEU 160 354 354 LEU LEU A . n A 1 161 VAL 161 355 355 VAL VAL A . n A 1 162 TRP 162 356 356 TRP TRP A . n A 1 163 TYR 163 357 357 TYR TYR A . n A 1 164 GLY 164 358 358 GLY GLY A . n A 1 165 ASP 165 359 359 ASP ASP A . n A 1 166 GLU 166 360 360 GLU GLU A . n A 1 167 TYR 167 361 361 TYR TYR A . n A 1 168 GLY 168 362 362 GLY GLY A . n A 1 169 GLN 169 363 363 GLN GLN A . n A 1 170 GLU 170 364 364 GLU GLU A . n A 1 171 LEU 171 365 365 LEU LEU A . n A 1 172 GLY 172 366 366 GLY GLY A . n A 1 173 ILE 173 367 367 ILE ILE A . n A 1 174 LYS 174 368 368 LYS LYS A . n A 1 175 TRP 175 369 369 TRP TRP A . n A 1 176 GLY 176 370 370 GLY GLY A . n A 1 177 SER 177 371 371 SER SER A . n A 1 178 LYS 178 372 372 LYS LYS A . n A 1 179 TRP 179 373 373 TRP TRP A . n A 1 180 LYS 180 374 374 LYS LYS A . n A 1 181 LYS 181 375 375 LYS LYS A . n A 1 182 GLU 182 376 376 GLU GLU A . n A 1 183 LEU 183 377 377 LEU LEU A . n A 1 184 MSE 184 378 378 MSE MSE A . n A 1 185 ALA 185 379 ? ? ? A . n A 1 186 GLY 186 380 ? ? ? A . n A 1 187 ARG 187 381 ? ? ? A . n A 1 188 GLU 188 382 ? ? ? A . n A 1 189 PRO 189 383 383 PRO PRO A . n A 1 190 LYS 190 384 384 LYS LYS A . n A 1 191 PRO 191 385 385 PRO PRO A . n A 1 192 GLU 192 386 386 GLU GLU A . n A 1 193 ILE 193 387 387 ILE ILE A . n A 1 194 HIS 194 388 388 HIS HIS A . n A 1 195 PRO 195 389 389 PRO PRO A . n A 1 196 CYS 196 390 390 CYS CYS A . n A 1 197 PRO 197 391 391 PRO PRO A . n A 1 198 SER 198 392 392 SER SER A . n A 1 199 CYS 199 393 393 CYS CYS A . n A 1 200 CYS 200 394 394 CYS CYS A . n A 1 201 LEU 201 395 395 LEU LEU A . n A 1 202 ALA 202 396 396 ALA ALA A . n A 1 203 PHE 203 397 397 PHE PHE A . n A 1 204 SER 204 398 398 SER SER A . n A 1 205 SER 205 399 399 SER SER A . n A 1 206 GLN 206 400 400 GLN GLN A . n A 1 207 LYS 207 401 401 LYS LYS A . n A 1 208 PHE 208 402 402 PHE PHE A . n A 1 209 LEU 209 403 403 LEU LEU A . n A 1 210 SER 210 404 404 SER SER A . n A 1 211 GLN 211 405 405 GLN GLN A . n A 1 212 HIS 212 406 406 HIS HIS A . n A 1 213 VAL 213 407 407 VAL VAL A . n A 1 214 GLU 214 408 408 GLU GLU A . n A 1 215 ARG 215 409 409 ARG ARG A . n A 1 216 ASN 216 410 410 ASN ASN A . n A 1 217 HIS 217 411 411 HIS HIS A . n A 1 218 SER 218 412 412 SER SER A . n A 1 219 SER 219 413 413 SER SER A . n A 1 220 GLN 220 414 ? ? ? A . n A 1 221 ASN 221 415 ? ? ? A . n B 1 1 SER 1 195 195 SER SER B . n B 1 2 GLU 2 196 196 GLU GLU B . n B 1 3 PRO 3 197 197 PRO PRO B . n B 1 4 GLN 4 198 198 GLN GLN B . n B 1 5 ASP 5 199 199 ASP ASP B . n B 1 6 ASP 6 200 200 ASP ASP B . n B 1 7 ASP 7 201 201 ASP ASP B . n B 1 8 TYR 8 202 202 TYR TYR B . n B 1 9 LEU 9 203 203 LEU LEU B . n B 1 10 TYR 10 204 204 TYR TYR B . n B 1 11 CYS 11 205 205 CYS CYS B . n B 1 12 GLU 12 206 206 GLU GLU B . n B 1 13 MSE 13 207 207 MSE MSE B . n B 1 14 CYS 14 208 208 CYS CYS B . n B 1 15 GLN 15 209 209 GLN GLN B . n B 1 16 ASN 16 210 210 ASN ASN B . n B 1 17 PHE 17 211 211 PHE PHE B . n B 1 18 PHE 18 212 212 PHE PHE B . n B 1 19 ILE 19 213 213 ILE ILE B . n B 1 20 ASP 20 214 214 ASP ASP B . n B 1 21 SER 21 215 215 SER SER B . n B 1 22 CYS 22 216 216 CYS CYS B . n B 1 23 ALA 23 217 217 ALA ALA B . n B 1 24 ALA 24 218 218 ALA ALA B . n B 1 25 HIS 25 219 219 HIS HIS B . n B 1 26 GLY 26 220 220 GLY GLY B . n B 1 27 PRO 27 221 221 PRO PRO B . n B 1 28 PRO 28 222 222 PRO PRO B . n B 1 29 THR 29 223 223 THR THR B . n B 1 30 PHE 30 224 224 PHE PHE B . n B 1 31 VAL 31 225 225 VAL VAL B . n B 1 32 LYS 32 226 226 LYS LYS B . n B 1 33 ASP 33 227 227 ASP ASP B . n B 1 34 SER 34 228 228 SER SER B . n B 1 35 ALA 35 229 229 ALA ALA B . n B 1 36 VAL 36 230 230 VAL VAL B . n B 1 37 ASP 37 231 231 ASP ASP B . n B 1 38 LYS 38 232 232 LYS LYS B . n B 1 39 GLY 39 233 233 GLY GLY B . n B 1 40 HIS 40 234 234 HIS HIS B . n B 1 41 PRO 41 235 235 PRO PRO B . n B 1 42 ASN 42 236 236 ASN ASN B . n B 1 43 ARG 43 237 237 ARG ARG B . n B 1 44 SER 44 238 238 SER SER B . n B 1 45 ALA 45 239 239 ALA ALA B . n B 1 46 LEU 46 240 240 LEU LEU B . n B 1 47 SER 47 241 241 SER SER B . n B 1 48 LEU 48 242 242 LEU LEU B . n B 1 49 PRO 49 243 243 PRO PRO B . n B 1 50 PRO 50 244 244 PRO PRO B . n B 1 51 GLY 51 245 245 GLY GLY B . n B 1 52 LEU 52 246 246 LEU LEU B . n B 1 53 ARG 53 247 247 ARG ARG B . n B 1 54 ILE 54 248 248 ILE ILE B . n B 1 55 GLY 55 249 249 GLY GLY B . n B 1 56 PRO 56 250 250 PRO PRO B . n B 1 57 SER 57 251 251 SER SER B . n B 1 58 GLY 58 252 252 GLY GLY B . n B 1 59 ILE 59 253 253 ILE ILE B . n B 1 60 PRO 60 254 254 PRO PRO B . n B 1 61 GLN 61 255 255 GLN GLN B . n B 1 62 ALA 62 256 256 ALA ALA B . n B 1 63 GLY 63 257 257 GLY GLY B . n B 1 64 LEU 64 258 258 LEU LEU B . n B 1 65 GLY 65 259 259 GLY GLY B . n B 1 66 VAL 66 260 260 VAL VAL B . n B 1 67 TRP 67 261 261 TRP TRP B . n B 1 68 ASN 68 262 262 ASN ASN B . n B 1 69 GLU 69 263 263 GLU GLU B . n B 1 70 ALA 70 264 264 ALA ALA B . n B 1 71 SER 71 265 265 SER SER B . n B 1 72 ASP 72 266 266 ASP ASP B . n B 1 73 LEU 73 267 267 LEU LEU B . n B 1 74 PRO 74 268 268 PRO PRO B . n B 1 75 LEU 75 269 269 LEU LEU B . n B 1 76 GLY 76 270 270 GLY GLY B . n B 1 77 LEU 77 271 271 LEU LEU B . n B 1 78 HIS 78 272 272 HIS HIS B . n B 1 79 PHE 79 273 273 PHE PHE B . n B 1 80 GLY 80 274 274 GLY GLY B . n B 1 81 PRO 81 275 275 PRO PRO B . n B 1 82 TYR 82 276 276 TYR TYR B . n B 1 83 GLU 83 277 277 GLU GLU B . n B 1 84 GLY 84 278 278 GLY GLY B . n B 1 85 ARG 85 279 279 ARG ARG B . n B 1 86 ILE 86 280 280 ILE ILE B . n B 1 87 THR 87 281 281 THR THR B . n B 1 88 GLU 88 282 282 GLU GLU B . n B 1 89 ASP 89 283 283 ASP ASP B . n B 1 90 GLU 90 284 284 GLU GLU B . n B 1 91 GLU 91 285 285 GLU GLU B . n B 1 92 ALA 92 286 286 ALA ALA B . n B 1 93 ALA 93 287 287 ALA ALA B . n B 1 94 ASN 94 288 288 ASN ASN B . n B 1 95 ASN 95 289 289 ASN ASN B . n B 1 96 GLY 96 290 290 GLY GLY B . n B 1 97 TYR 97 291 291 TYR TYR B . n B 1 98 SER 98 292 292 SER SER B . n B 1 99 TRP 99 293 293 TRP TRP B . n B 1 100 LEU 100 294 294 LEU LEU B . n B 1 101 ILE 101 295 295 ILE ILE B . n B 1 102 THR 102 296 296 THR THR B . n B 1 103 LYS 103 297 297 LYS LYS B . n B 1 104 GLY 104 298 298 GLY GLY B . n B 1 105 ARG 105 299 299 ARG ARG B . n B 1 106 ASN 106 300 300 ASN ASN B . n B 1 107 CYS 107 301 301 CYS CYS B . n B 1 108 TYR 108 302 302 TYR TYR B . n B 1 109 GLU 109 303 303 GLU GLU B . n B 1 110 TYR 110 304 304 TYR TYR B . n B 1 111 VAL 111 305 305 VAL VAL B . n B 1 112 ASP 112 306 306 ASP ASP B . n B 1 113 GLY 113 307 307 GLY GLY B . n B 1 114 LYS 114 308 308 LYS LYS B . n B 1 115 ASP 115 309 309 ASP ASP B . n B 1 116 LYS 116 310 310 LYS LYS B . n B 1 117 SER 117 311 311 SER SER B . n B 1 118 TRP 118 312 312 TRP TRP B . n B 1 119 ALA 119 313 313 ALA ALA B . n B 1 120 ASN 120 314 314 ASN ASN B . n B 1 121 TRP 121 315 315 TRP TRP B . n B 1 122 MSE 122 316 316 MSE MSE B . n B 1 123 ARG 123 317 317 ARG ARG B . n B 1 124 TYR 124 318 318 TYR TYR B . n B 1 125 VAL 125 319 319 VAL VAL B . n B 1 126 ASN 126 320 320 ASN ASN B . n B 1 127 CYS 127 321 321 CYS CYS B . n B 1 128 ALA 128 322 322 ALA ALA B . n B 1 129 ARG 129 323 323 ARG ARG B . n B 1 130 ASP 130 324 324 ASP ASP B . n B 1 131 ASP 131 325 325 ASP ASP B . n B 1 132 GLU 132 326 326 GLU GLU B . n B 1 133 GLU 133 327 327 GLU GLU B . n B 1 134 GLN 134 328 328 GLN GLN B . n B 1 135 ASN 135 329 329 ASN ASN B . n B 1 136 LEU 136 330 330 LEU LEU B . n B 1 137 VAL 137 331 331 VAL VAL B . n B 1 138 ALA 138 332 332 ALA ALA B . n B 1 139 PHE 139 333 333 PHE PHE B . n B 1 140 GLN 140 334 334 GLN GLN B . n B 1 141 TYR 141 335 335 TYR TYR B . n B 1 142 HIS 142 336 336 HIS HIS B . n B 1 143 ARG 143 337 337 ARG ARG B . n B 1 144 GLN 144 338 338 GLN GLN B . n B 1 145 ILE 145 339 339 ILE ILE B . n B 1 146 PHE 146 340 340 PHE PHE B . n B 1 147 TYR 147 341 341 TYR TYR B . n B 1 148 ARG 148 342 342 ARG ARG B . n B 1 149 THR 149 343 343 THR THR B . n B 1 150 CYS 150 344 344 CYS CYS B . n B 1 151 ARG 151 345 345 ARG ARG B . n B 1 152 VAL 152 346 346 VAL VAL B . n B 1 153 ILE 153 347 347 ILE ILE B . n B 1 154 ARG 154 348 348 ARG ARG B . n B 1 155 PRO 155 349 349 PRO PRO B . n B 1 156 GLY 156 350 350 GLY GLY B . n B 1 157 CYS 157 351 351 CYS CYS B . n B 1 158 GLU 158 352 352 GLU GLU B . n B 1 159 LEU 159 353 353 LEU LEU B . n B 1 160 LEU 160 354 354 LEU LEU B . n B 1 161 VAL 161 355 355 VAL VAL B . n B 1 162 TRP 162 356 356 TRP TRP B . n B 1 163 TYR 163 357 357 TYR TYR B . n B 1 164 GLY 164 358 358 GLY GLY B . n B 1 165 ASP 165 359 359 ASP ASP B . n B 1 166 GLU 166 360 360 GLU GLU B . n B 1 167 TYR 167 361 361 TYR TYR B . n B 1 168 GLY 168 362 362 GLY GLY B . n B 1 169 GLN 169 363 363 GLN GLN B . n B 1 170 GLU 170 364 364 GLU GLU B . n B 1 171 LEU 171 365 365 LEU LEU B . n B 1 172 GLY 172 366 366 GLY GLY B . n B 1 173 ILE 173 367 367 ILE ILE B . n B 1 174 LYS 174 368 368 LYS LYS B . n B 1 175 TRP 175 369 369 TRP TRP B . n B 1 176 GLY 176 370 370 GLY GLY B . n B 1 177 SER 177 371 371 SER SER B . n B 1 178 LYS 178 372 372 LYS LYS B . n B 1 179 TRP 179 373 373 TRP TRP B . n B 1 180 LYS 180 374 374 LYS LYS B . n B 1 181 LYS 181 375 375 LYS LYS B . n B 1 182 GLU 182 376 376 GLU GLU B . n B 1 183 LEU 183 377 377 LEU LEU B . n B 1 184 MSE 184 378 378 MSE MSE B . n B 1 185 ALA 185 379 ? ? ? B . n B 1 186 GLY 186 380 ? ? ? B . n B 1 187 ARG 187 381 381 ARG ARG B . n B 1 188 GLU 188 382 382 GLU GLU B . n B 1 189 PRO 189 383 383 PRO PRO B . n B 1 190 LYS 190 384 384 LYS LYS B . n B 1 191 PRO 191 385 385 PRO PRO B . n B 1 192 GLU 192 386 386 GLU GLU B . n B 1 193 ILE 193 387 387 ILE ILE B . n B 1 194 HIS 194 388 388 HIS HIS B . n B 1 195 PRO 195 389 389 PRO PRO B . n B 1 196 CYS 196 390 390 CYS CYS B . n B 1 197 PRO 197 391 391 PRO PRO B . n B 1 198 SER 198 392 392 SER SER B . n B 1 199 CYS 199 393 393 CYS CYS B . n B 1 200 CYS 200 394 394 CYS CYS B . n B 1 201 LEU 201 395 395 LEU LEU B . n B 1 202 ALA 202 396 396 ALA ALA B . n B 1 203 PHE 203 397 397 PHE PHE B . n B 1 204 SER 204 398 398 SER SER B . n B 1 205 SER 205 399 399 SER SER B . n B 1 206 GLN 206 400 400 GLN GLN B . n B 1 207 LYS 207 401 401 LYS LYS B . n B 1 208 PHE 208 402 402 PHE PHE B . n B 1 209 LEU 209 403 403 LEU LEU B . n B 1 210 SER 210 404 404 SER SER B . n B 1 211 GLN 211 405 405 GLN GLN B . n B 1 212 HIS 212 406 406 HIS HIS B . n B 1 213 VAL 213 407 407 VAL VAL B . n B 1 214 GLU 214 408 408 GLU GLU B . n B 1 215 ARG 215 409 409 ARG ARG B . n B 1 216 ASN 216 410 410 ASN ASN B . n B 1 217 HIS 217 411 411 HIS HIS B . n B 1 218 SER 218 412 ? ? ? B . n B 1 219 SER 219 413 ? ? ? B . n B 1 220 GLN 220 414 ? ? ? B . n B 1 221 ASN 221 415 ? ? ? B . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name ? _pdbx_SG_project.full_name_of_center 'Structural Genomics Consortium' _pdbx_SG_project.initial_of_center SGC # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN 1 501 1000 ZN ZN A . D 2 ZN 1 502 1001 ZN ZN A . E 3 UNX 1 503 1002 UNX UNX A . F 3 UNX 1 504 1003 UNX UNX A . G 3 UNX 1 505 1005 UNX UNX A . H 3 UNX 1 506 1006 UNX UNX A . I 3 UNX 1 507 1007 UNX UNX A . J 3 UNX 1 508 1008 UNX UNX A . K 3 UNX 1 509 1009 UNX UNX A . L 3 UNX 1 510 1010 UNX UNX A . M 3 UNX 1 511 1014 UNX UNX A . N 3 UNX 1 512 1015 UNX UNX A . O 3 UNX 1 513 1016 UNX UNX A . P 3 UNX 1 514 1017 UNX UNX A . Q 3 UNX 1 515 1020 UNX UNX A . R 3 UNX 1 516 1021 UNX UNX A . S 3 UNX 1 517 1022 UNX UNX A . T 3 UNX 1 518 1023 UNX UNX A . U 2 ZN 1 501 1000 ZN ZN B . V 2 ZN 1 502 1001 ZN ZN B . W 3 UNX 1 503 1001 UNX UNX B . X 3 UNX 1 504 1004 UNX UNX B . Y 3 UNX 1 505 1011 UNX UNX B . Z 3 UNX 1 506 1012 UNX UNX B . AA 3 UNX 1 507 1013 UNX UNX B . BA 3 UNX 1 508 1018 UNX UNX B . CA 3 UNX 1 509 1019 UNX UNX B . DA 3 UNX 1 510 1024 UNX UNX B . EA 4 HOH 1 601 1 HOH HOH A . EA 4 HOH 2 602 3 HOH HOH A . EA 4 HOH 3 603 5 HOH HOH A . EA 4 HOH 4 604 6 HOH HOH A . EA 4 HOH 5 605 7 HOH HOH A . EA 4 HOH 6 606 8 HOH HOH A . EA 4 HOH 7 607 9 HOH HOH A . EA 4 HOH 8 608 11 HOH HOH A . EA 4 HOH 9 609 12 HOH HOH A . EA 4 HOH 10 610 13 HOH HOH A . EA 4 HOH 11 611 15 HOH HOH A . EA 4 HOH 12 612 16 HOH HOH A . EA 4 HOH 13 613 17 HOH HOH A . EA 4 HOH 14 614 18 HOH HOH A . EA 4 HOH 15 615 19 HOH HOH A . EA 4 HOH 16 616 21 HOH HOH A . EA 4 HOH 17 617 22 HOH HOH A . EA 4 HOH 18 618 23 HOH HOH A . EA 4 HOH 19 619 24 HOH HOH A . EA 4 HOH 20 620 25 HOH HOH A . EA 4 HOH 21 621 26 HOH HOH A . EA 4 HOH 22 622 27 HOH HOH A . EA 4 HOH 23 623 28 HOH HOH A . EA 4 HOH 24 624 30 HOH HOH A . EA 4 HOH 25 625 31 HOH HOH A . EA 4 HOH 26 626 33 HOH HOH A . EA 4 HOH 27 627 34 HOH HOH A . EA 4 HOH 28 628 35 HOH HOH A . EA 4 HOH 29 629 36 HOH HOH A . EA 4 HOH 30 630 37 HOH HOH A . EA 4 HOH 31 631 45 HOH HOH A . EA 4 HOH 32 632 46 HOH HOH A . EA 4 HOH 33 633 47 HOH HOH A . EA 4 HOH 34 634 48 HOH HOH A . EA 4 HOH 35 635 49 HOH HOH A . EA 4 HOH 36 636 50 HOH HOH A . EA 4 HOH 37 637 51 HOH HOH A . EA 4 HOH 38 638 52 HOH HOH A . EA 4 HOH 39 639 53 HOH HOH A . EA 4 HOH 40 640 55 HOH HOH A . EA 4 HOH 41 641 58 HOH HOH A . EA 4 HOH 42 642 59 HOH HOH A . FA 4 HOH 1 601 2 HOH HOH B . FA 4 HOH 2 602 4 HOH HOH B . FA 4 HOH 3 603 10 HOH HOH B . FA 4 HOH 4 604 14 HOH HOH B . FA 4 HOH 5 605 20 HOH HOH B . FA 4 HOH 6 606 29 HOH HOH B . FA 4 HOH 7 607 32 HOH HOH B . FA 4 HOH 8 608 38 HOH HOH B . FA 4 HOH 9 609 39 HOH HOH B . FA 4 HOH 10 610 40 HOH HOH B . FA 4 HOH 11 611 41 HOH HOH B . FA 4 HOH 12 612 42 HOH HOH B . FA 4 HOH 13 613 43 HOH HOH B . FA 4 HOH 14 614 54 HOH HOH B . FA 4 HOH 15 615 56 HOH HOH B . FA 4 HOH 16 616 57 HOH HOH B . FA 4 HOH 17 617 60 HOH HOH B . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 13 A MSE 207 ? MET SELENOMETHIONINE 2 A MSE 122 A MSE 316 ? MET SELENOMETHIONINE 3 A MSE 184 A MSE 378 ? MET SELENOMETHIONINE 4 B MSE 13 B MSE 207 ? MET SELENOMETHIONINE 5 B MSE 122 B MSE 316 ? MET SELENOMETHIONINE 6 B MSE 184 B MSE 378 ? MET SELENOMETHIONINE # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA monomeric 1 2 author_and_software_defined_assembly PISA monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,EA 2 1 B,U,V,W,X,Y,Z,AA,BA,CA,DA,FA # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 NE2 ? A HIS 212 ? A HIS 406 ? 1_555 ZN ? D ZN . ? A ZN 502 ? 1_555 NE2 ? A HIS 217 ? A HIS 411 ? 1_555 100.9 ? 2 NE2 ? A HIS 212 ? A HIS 406 ? 1_555 ZN ? D ZN . ? A ZN 502 ? 1_555 SG ? A CYS 199 ? A CYS 393 ? 1_555 111.2 ? 3 NE2 ? A HIS 217 ? A HIS 411 ? 1_555 ZN ? D ZN . ? A ZN 502 ? 1_555 SG ? A CYS 199 ? A CYS 393 ? 1_555 117.7 ? 4 NE2 ? A HIS 212 ? A HIS 406 ? 1_555 ZN ? D ZN . ? A ZN 502 ? 1_555 SG ? A CYS 196 ? A CYS 390 ? 1_555 98.8 ? 5 NE2 ? A HIS 217 ? A HIS 411 ? 1_555 ZN ? D ZN . ? A ZN 502 ? 1_555 SG ? A CYS 196 ? A CYS 390 ? 1_555 102.4 ? 6 SG ? A CYS 199 ? A CYS 393 ? 1_555 ZN ? D ZN . ? A ZN 502 ? 1_555 SG ? A CYS 196 ? A CYS 390 ? 1_555 122.3 ? 7 NE2 ? B HIS 212 ? B HIS 406 ? 1_555 ZN ? V ZN . ? B ZN 502 ? 1_555 NE2 ? B HIS 217 ? B HIS 411 ? 1_555 104.3 ? 8 NE2 ? B HIS 212 ? B HIS 406 ? 1_555 ZN ? V ZN . ? B ZN 502 ? 1_555 SG ? B CYS 196 ? B CYS 390 ? 1_555 109.4 ? 9 NE2 ? B HIS 217 ? B HIS 411 ? 1_555 ZN ? V ZN . ? B ZN 502 ? 1_555 SG ? B CYS 196 ? B CYS 390 ? 1_555 105.8 ? 10 NE2 ? B HIS 212 ? B HIS 406 ? 1_555 ZN ? V ZN . ? B ZN 502 ? 1_555 SG ? B CYS 199 ? B CYS 393 ? 1_555 102.4 ? 11 NE2 ? B HIS 217 ? B HIS 411 ? 1_555 ZN ? V ZN . ? B ZN 502 ? 1_555 SG ? B CYS 199 ? B CYS 393 ? 1_555 116.0 ? 12 SG ? B CYS 196 ? B CYS 390 ? 1_555 ZN ? V ZN . ? B ZN 502 ? 1_555 SG ? B CYS 199 ? B CYS 393 ? 1_555 118.0 ? 13 ND1 ? B HIS 25 ? B HIS 219 ? 1_555 ZN ? U ZN . ? B ZN 501 ? 1_555 SG ? B CYS 11 ? B CYS 205 ? 1_555 104.9 ? 14 ND1 ? B HIS 25 ? B HIS 219 ? 1_555 ZN ? U ZN . ? B ZN 501 ? 1_555 SG ? B CYS 22 ? B CYS 216 ? 1_555 120.9 ? 15 SG ? B CYS 11 ? B CYS 205 ? 1_555 ZN ? U ZN . ? B ZN 501 ? 1_555 SG ? B CYS 22 ? B CYS 216 ? 1_555 125.1 ? 16 ND1 ? B HIS 25 ? B HIS 219 ? 1_555 ZN ? U ZN . ? B ZN 501 ? 1_555 SG ? B CYS 14 ? B CYS 208 ? 1_555 101.8 ? 17 SG ? B CYS 11 ? B CYS 205 ? 1_555 ZN ? U ZN . ? B ZN 501 ? 1_555 SG ? B CYS 14 ? B CYS 208 ? 1_555 113.9 ? 18 SG ? B CYS 22 ? B CYS 216 ? 1_555 ZN ? U ZN . ? B ZN 501 ? 1_555 SG ? B CYS 14 ? B CYS 208 ? 1_555 86.1 ? 19 ND1 ? A HIS 25 ? A HIS 219 ? 1_555 ZN ? C ZN . ? A ZN 501 ? 1_555 SG ? A CYS 11 ? A CYS 205 ? 1_555 105.8 ? 20 ND1 ? A HIS 25 ? A HIS 219 ? 1_555 ZN ? C ZN . ? A ZN 501 ? 1_555 SG ? A CYS 22 ? A CYS 216 ? 1_555 111.6 ? 21 SG ? A CYS 11 ? A CYS 205 ? 1_555 ZN ? C ZN . ? A ZN 501 ? 1_555 SG ? A CYS 22 ? A CYS 216 ? 1_555 121.8 ? 22 ND1 ? A HIS 25 ? A HIS 219 ? 1_555 ZN ? C ZN . ? A ZN 501 ? 1_555 SG ? A CYS 14 ? A CYS 208 ? 1_555 97.7 ? 23 SG ? A CYS 11 ? A CYS 205 ? 1_555 ZN ? C ZN . ? A ZN 501 ? 1_555 SG ? A CYS 14 ? A CYS 208 ? 1_555 114.6 ? 24 SG ? A CYS 22 ? A CYS 216 ? 1_555 ZN ? C ZN . ? A ZN 501 ? 1_555 SG ? A CYS 14 ? A CYS 208 ? 1_555 102.9 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-02-13 2 'Structure model' 1 1 2017-11-15 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Refinement description' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 2 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category software # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 10.2363 -0.4864 0.3803 0.0342 0.0332 0.0631 -0.0061 -0.0162 -0.0212 3.8416 3.2820 0.9260 -2.2825 0.0946 -0.3316 -0.0964 0.0702 0.0262 -0.1070 0.1347 -0.1115 0.1125 -0.1320 -0.0408 'X-RAY DIFFRACTION' 2 ? refined 30.5330 -5.6112 36.1270 0.1930 0.1962 0.1053 0.0643 0.0475 0.0246 2.4132 3.5819 1.3689 0.6363 -0.5177 -0.7734 0.0458 -0.0912 0.0454 0.0920 0.1114 -0.1592 -0.1552 0.0791 0.0747 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 195 A 413 ? . . . . ? 'X-RAY DIFFRACTION' 2 1 A 501 A 502 ? . . . . ? 'X-RAY DIFFRACTION' 3 2 B 195 B 411 ? . . . . ? 'X-RAY DIFFRACTION' 4 2 B 501 B 502 ? . . . . ? # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 SCALEPACK . ? program 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 2 REFMAC . ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 3 PDB_EXTRACT 3.11 'April 22, 2011' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 4 SBC-Collect . ? ? ? ? 'data collection' ? ? ? 5 HKL-3000 . ? ? ? ? 'data scaling' ? ? ? 6 SOLVE . ? ? ? ? phasing ? ? ? 7 Coot 0.6.2 ? ? ? ? 'model building' ? ? ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 NH1 _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 ARG _pdbx_validate_close_contact.auth_seq_id_1 345 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 618 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.18 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 CE2 A TRP 356 ? ? CD2 A TRP 356 ? ? 1.482 1.409 0.073 0.012 N 2 1 CG B HIS 411 ? ? CD2 B HIS 411 ? ? 1.409 1.354 0.055 0.009 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 214 ? ? 81.76 -66.14 2 1 GLN A 255 ? ? 79.93 -3.03 3 1 GLU A 263 ? ? -123.20 -54.62 4 1 ASN A 288 ? B 35.81 41.83 5 1 HIS A 411 ? ? -139.50 -41.84 6 1 SER A 412 ? ? -165.07 118.77 7 1 GLU B 196 ? ? -171.76 124.02 8 1 ASP B 214 ? ? 73.33 -65.17 9 1 GLU B 263 ? ? -132.92 -60.29 10 1 ASN B 288 ? ? 56.21 13.22 11 1 ASN B 300 ? ? 45.50 28.82 12 1 ASN B 410 ? ? -158.14 29.39 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ASP 214 ? CG ? A ASP 20 CG 2 1 Y 1 A ASP 214 ? OD1 ? A ASP 20 OD1 3 1 Y 1 A ASP 214 ? OD2 ? A ASP 20 OD2 4 1 Y 1 A LYS 226 ? CG ? A LYS 32 CG 5 1 Y 1 A LYS 226 ? CD ? A LYS 32 CD 6 1 Y 1 A LYS 226 ? CE ? A LYS 32 CE 7 1 Y 1 A LYS 226 ? NZ ? A LYS 32 NZ 8 1 Y 1 A ASP 231 ? CG ? A ASP 37 CG 9 1 Y 1 A ASP 231 ? OD1 ? A ASP 37 OD1 10 1 Y 1 A ASP 231 ? OD2 ? A ASP 37 OD2 11 1 Y 1 A LYS 232 ? CG ? A LYS 38 CG 12 1 Y 1 A LYS 232 ? CD ? A LYS 38 CD 13 1 Y 1 A LYS 232 ? CE ? A LYS 38 CE 14 1 Y 1 A LYS 232 ? NZ ? A LYS 38 NZ 15 1 Y 1 A HIS 234 ? CG ? A HIS 40 CG 16 1 Y 1 A HIS 234 ? ND1 ? A HIS 40 ND1 17 1 Y 1 A HIS 234 ? CD2 ? A HIS 40 CD2 18 1 Y 1 A HIS 234 ? CE1 ? A HIS 40 CE1 19 1 Y 1 A HIS 234 ? NE2 ? A HIS 40 NE2 20 1 Y 1 A ARG 279 ? CG ? A ARG 85 CG 21 1 Y 1 A ARG 279 ? CD ? A ARG 85 CD 22 1 Y 1 A ARG 279 ? NE ? A ARG 85 NE 23 1 Y 1 A ARG 279 ? CZ ? A ARG 85 CZ 24 1 Y 1 A ARG 279 ? NH1 ? A ARG 85 NH1 25 1 Y 1 A ARG 279 ? NH2 ? A ARG 85 NH2 26 1 Y 1 A GLU 284 ? CG ? A GLU 90 CG 27 1 Y 1 A GLU 284 ? CD ? A GLU 90 CD 28 1 Y 1 A GLU 284 ? OE1 ? A GLU 90 OE1 29 1 Y 1 A GLU 284 ? OE2 ? A GLU 90 OE2 30 1 Y 1 A GLU 285 ? CG ? A GLU 91 CG 31 1 Y 1 A GLU 285 ? CD ? A GLU 91 CD 32 1 Y 1 A GLU 285 ? OE1 ? A GLU 91 OE1 33 1 Y 1 A GLU 285 ? OE2 ? A GLU 91 OE2 34 1 Y 1 A ASN 288 ? CG ? A ASN 94 CG 35 1 Y 1 A ASN 288 ? OD1 ? A ASN 94 OD1 36 1 Y 1 A ASN 288 ? ND2 ? A ASN 94 ND2 37 1 Y 1 A GLU 303 ? CG ? A GLU 109 CG 38 1 Y 1 A GLU 303 ? CD ? A GLU 109 CD 39 1 Y 1 A GLU 303 ? OE1 ? A GLU 109 OE1 40 1 Y 1 A GLU 303 ? OE2 ? A GLU 109 OE2 41 1 Y 1 A LYS 308 ? CG ? A LYS 114 CG 42 1 Y 1 A LYS 308 ? CD ? A LYS 114 CD 43 1 Y 1 A LYS 308 ? CE ? A LYS 114 CE 44 1 Y 1 A LYS 308 ? NZ ? A LYS 114 NZ 45 1 Y 1 A SER 311 ? OG ? A SER 117 OG 46 1 Y 1 A ARG 348 ? CD ? A ARG 154 CD 47 1 Y 1 A ARG 348 ? NE ? A ARG 154 NE 48 1 Y 1 A ARG 348 ? CZ ? A ARG 154 CZ 49 1 Y 1 A ARG 348 ? NH1 ? A ARG 154 NH1 50 1 Y 1 A ARG 348 ? NH2 ? A ARG 154 NH2 51 1 Y 1 A GLN 363 ? CG ? A GLN 169 CG 52 1 Y 1 A GLN 363 ? CD ? A GLN 169 CD 53 1 Y 1 A GLN 363 ? OE1 ? A GLN 169 OE1 54 1 Y 1 A GLN 363 ? NE2 ? A GLN 169 NE2 55 1 Y 1 A GLU 364 ? CD ? A GLU 170 CD 56 1 Y 1 A GLU 364 ? OE1 ? A GLU 170 OE1 57 1 Y 1 A GLU 364 ? OE2 ? A GLU 170 OE2 58 1 Y 1 A ILE 367 ? CG1 ? A ILE 173 CG1 59 1 Y 1 A ILE 367 ? CG2 ? A ILE 173 CG2 60 1 Y 1 A ILE 367 ? CD1 ? A ILE 173 CD1 61 1 Y 1 A LYS 372 ? CG ? A LYS 178 CG 62 1 Y 1 A LYS 372 ? CD ? A LYS 178 CD 63 1 Y 1 A LYS 372 ? CE ? A LYS 178 CE 64 1 Y 1 A LYS 372 ? NZ ? A LYS 178 NZ 65 1 Y 1 A GLU 376 ? CG ? A GLU 182 CG 66 1 Y 1 A GLU 376 ? CD ? A GLU 182 CD 67 1 Y 1 A GLU 376 ? OE1 ? A GLU 182 OE1 68 1 Y 1 A GLU 376 ? OE2 ? A GLU 182 OE2 69 1 Y 1 A LYS 384 ? CG ? A LYS 190 CG 70 1 Y 1 A LYS 384 ? CD ? A LYS 190 CD 71 1 Y 1 A LYS 384 ? CE ? A LYS 190 CE 72 1 Y 1 A LYS 384 ? NZ ? A LYS 190 NZ 73 1 Y 1 A ILE 387 ? CG1 ? A ILE 193 CG1 74 1 Y 1 A ILE 387 ? CD1 ? A ILE 193 CD1 75 1 Y 1 A GLN 400 ? CD ? A GLN 206 CD 76 1 Y 1 A GLN 400 ? OE1 ? A GLN 206 OE1 77 1 Y 1 A GLN 400 ? NE2 ? A GLN 206 NE2 78 1 Y 1 A LYS 401 ? CD ? A LYS 207 CD 79 1 Y 1 A LYS 401 ? CE ? A LYS 207 CE 80 1 Y 1 A LYS 401 ? NZ ? A LYS 207 NZ 81 1 Y 1 A ARG 409 ? CD ? A ARG 215 CD 82 1 Y 1 A ARG 409 ? NE ? A ARG 215 NE 83 1 Y 1 A ARG 409 ? CZ ? A ARG 215 CZ 84 1 Y 1 A ARG 409 ? NH1 ? A ARG 215 NH1 85 1 Y 1 A ARG 409 ? NH2 ? A ARG 215 NH2 86 1 Y 1 B SER 195 ? OG ? B SER 1 OG 87 1 Y 1 B ASP 214 ? CG ? B ASP 20 CG 88 1 Y 1 B ASP 214 ? OD1 ? B ASP 20 OD1 89 1 Y 1 B ASP 214 ? OD2 ? B ASP 20 OD2 90 1 Y 1 B LYS 226 ? CG ? B LYS 32 CG 91 1 Y 1 B LYS 226 ? CD ? B LYS 32 CD 92 1 Y 1 B LYS 226 ? CE ? B LYS 32 CE 93 1 Y 1 B LYS 226 ? NZ ? B LYS 32 NZ 94 1 Y 1 B ASP 231 ? CG ? B ASP 37 CG 95 1 Y 1 B ASP 231 ? OD1 ? B ASP 37 OD1 96 1 Y 1 B ASP 231 ? OD2 ? B ASP 37 OD2 97 1 Y 1 B LYS 232 ? CG ? B LYS 38 CG 98 1 Y 1 B LYS 232 ? CD ? B LYS 38 CD 99 1 Y 1 B LYS 232 ? CE ? B LYS 38 CE 100 1 Y 1 B LYS 232 ? NZ ? B LYS 38 NZ 101 1 Y 1 B ILE 253 ? CG1 ? B ILE 59 CG1 102 1 Y 1 B ILE 253 ? CD1 ? B ILE 59 CD1 103 1 Y 1 B GLN 255 ? CG ? B GLN 61 CG 104 1 Y 1 B GLN 255 ? CD ? B GLN 61 CD 105 1 Y 1 B GLN 255 ? OE1 ? B GLN 61 OE1 106 1 Y 1 B GLN 255 ? NE2 ? B GLN 61 NE2 107 1 Y 1 B GLU 263 ? CD ? B GLU 69 CD 108 1 Y 1 B GLU 263 ? OE1 ? B GLU 69 OE1 109 1 Y 1 B GLU 263 ? OE2 ? B GLU 69 OE2 110 1 Y 1 B ILE 280 ? CG1 ? B ILE 86 CG1 111 1 Y 1 B ILE 280 ? CG2 ? B ILE 86 CG2 112 1 Y 1 B ILE 280 ? CD1 ? B ILE 86 CD1 113 1 Y 1 B GLU 284 ? CG ? B GLU 90 CG 114 1 Y 1 B GLU 284 ? CD ? B GLU 90 CD 115 1 Y 1 B GLU 284 ? OE1 ? B GLU 90 OE1 116 1 Y 1 B GLU 284 ? OE2 ? B GLU 90 OE2 117 1 Y 1 B GLU 285 ? CG ? B GLU 91 CG 118 1 Y 1 B GLU 285 ? CD ? B GLU 91 CD 119 1 Y 1 B GLU 285 ? OE1 ? B GLU 91 OE1 120 1 Y 1 B GLU 285 ? OE2 ? B GLU 91 OE2 121 1 Y 1 B LYS 297 ? CE ? B LYS 103 CE 122 1 Y 1 B LYS 297 ? NZ ? B LYS 103 NZ 123 1 Y 1 B LYS 308 ? CG ? B LYS 114 CG 124 1 Y 1 B LYS 308 ? CD ? B LYS 114 CD 125 1 Y 1 B LYS 308 ? CE ? B LYS 114 CE 126 1 Y 1 B LYS 308 ? NZ ? B LYS 114 NZ 127 1 Y 1 B LYS 310 ? CE ? B LYS 116 CE 128 1 Y 1 B LYS 310 ? NZ ? B LYS 116 NZ 129 1 Y 1 B ARG 348 ? CG ? B ARG 154 CG 130 1 Y 1 B ARG 348 ? CD ? B ARG 154 CD 131 1 Y 1 B ARG 348 ? NE ? B ARG 154 NE 132 1 Y 1 B ARG 348 ? CZ ? B ARG 154 CZ 133 1 Y 1 B ARG 348 ? NH1 ? B ARG 154 NH1 134 1 Y 1 B ARG 348 ? NH2 ? B ARG 154 NH2 135 1 Y 1 B GLN 363 ? CG ? B GLN 169 CG 136 1 Y 1 B GLN 363 ? CD ? B GLN 169 CD 137 1 Y 1 B GLN 363 ? OE1 ? B GLN 169 OE1 138 1 Y 1 B GLN 363 ? NE2 ? B GLN 169 NE2 139 1 Y 1 B GLU 364 ? CD ? B GLU 170 CD 140 1 Y 1 B GLU 364 ? OE1 ? B GLU 170 OE1 141 1 Y 1 B GLU 364 ? OE2 ? B GLU 170 OE2 142 1 Y 1 B ILE 367 ? CG1 ? B ILE 173 CG1 143 1 Y 1 B ILE 367 ? CG2 ? B ILE 173 CG2 144 1 Y 1 B ILE 367 ? CD1 ? B ILE 173 CD1 145 1 Y 1 B LYS 372 ? CG ? B LYS 178 CG 146 1 Y 1 B LYS 372 ? CD ? B LYS 178 CD 147 1 Y 1 B LYS 372 ? CE ? B LYS 178 CE 148 1 Y 1 B LYS 372 ? NZ ? B LYS 178 NZ 149 1 Y 1 B GLU 376 ? CG ? B GLU 182 CG 150 1 Y 1 B GLU 376 ? CD ? B GLU 182 CD 151 1 Y 1 B GLU 376 ? OE1 ? B GLU 182 OE1 152 1 Y 1 B GLU 376 ? OE2 ? B GLU 182 OE2 153 1 Y 1 B LEU 377 ? CG ? B LEU 183 CG 154 1 Y 1 B LEU 377 ? CD1 ? B LEU 183 CD1 155 1 Y 1 B LEU 377 ? CD2 ? B LEU 183 CD2 156 1 Y 1 B ARG 381 ? CG ? B ARG 187 CG 157 1 Y 1 B ARG 381 ? CD ? B ARG 187 CD 158 1 Y 1 B ARG 381 ? NE ? B ARG 187 NE 159 1 Y 1 B ARG 381 ? CZ ? B ARG 187 CZ 160 1 Y 1 B ARG 381 ? NH1 ? B ARG 187 NH1 161 1 Y 1 B ARG 381 ? NH2 ? B ARG 187 NH2 162 1 Y 1 B LYS 384 ? CG ? B LYS 190 CG 163 1 Y 1 B LYS 384 ? CD ? B LYS 190 CD 164 1 Y 1 B LYS 384 ? CE ? B LYS 190 CE 165 1 Y 1 B LYS 384 ? NZ ? B LYS 190 NZ 166 1 Y 1 B GLU 386 ? CG ? B GLU 192 CG 167 1 Y 1 B GLU 386 ? CD ? B GLU 192 CD 168 1 Y 1 B GLU 386 ? OE1 ? B GLU 192 OE1 169 1 Y 1 B GLU 386 ? OE2 ? B GLU 192 OE2 170 1 Y 1 B LYS 401 ? CG ? B LYS 207 CG 171 1 Y 1 B LYS 401 ? CD ? B LYS 207 CD 172 1 Y 1 B LYS 401 ? CE ? B LYS 207 CE 173 1 Y 1 B LYS 401 ? NZ ? B LYS 207 NZ 174 1 Y 1 B GLU 408 ? CG ? B GLU 214 CG 175 1 Y 1 B GLU 408 ? CD ? B GLU 214 CD 176 1 Y 1 B GLU 408 ? OE1 ? B GLU 214 OE1 177 1 Y 1 B GLU 408 ? OE2 ? B GLU 214 OE2 178 1 Y 1 B ARG 409 ? CG ? B ARG 215 CG 179 1 Y 1 B ARG 409 ? CD ? B ARG 215 CD 180 1 Y 1 B ARG 409 ? NE ? B ARG 215 NE 181 1 Y 1 B ARG 409 ? CZ ? B ARG 215 CZ 182 1 Y 1 B ARG 409 ? NH1 ? B ARG 215 NH1 183 1 Y 1 B ARG 409 ? NH2 ? B ARG 215 NH2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ALA 379 ? A ALA 185 2 1 Y 1 A GLY 380 ? A GLY 186 3 1 Y 1 A ARG 381 ? A ARG 187 4 1 Y 1 A GLU 382 ? A GLU 188 5 1 Y 1 A GLN 414 ? A GLN 220 6 1 Y 1 A ASN 415 ? A ASN 221 7 1 Y 1 B ALA 379 ? B ALA 185 8 1 Y 1 B GLY 380 ? B GLY 186 9 1 Y 1 B SER 412 ? B SER 218 10 1 Y 1 B SER 413 ? B SER 219 11 1 Y 1 B GLN 414 ? B GLN 220 12 1 Y 1 B ASN 415 ? B ASN 221 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'ZINC ION' ZN 3 'UNKNOWN ATOM OR ION' UNX 4 water HOH #