HEADER TRANSFERASE/TRANSFERASE INHIBITOR 01-JAN-13 4IM3 TITLE STRUCTURE OF TANK-BINDING KINASE 1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE/THREONINE-PROTEIN KINASE TBK1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 1 TO 657; COMPND 5 SYNONYM: NF-KAPPA-B-ACTIVATING KINASE, T2K, TANK-BINDING KINASE 1; COMPND 6 EC: 2.7.11.1; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TBK1, NAK; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS KINASE, SERINE/THREONINE KINASE, BX795, PCMNP, TRANSFERASE- KEYWDS 2 TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR D.TU,M.J.ECK REVDAT 4 28-FEB-24 4IM3 1 REMARK SEQADV LINK REVDAT 3 17-JUL-19 4IM3 1 JRNL REMARK REVDAT 2 20-MAR-13 4IM3 1 REMARK REVDAT 1 06-MAR-13 4IM3 0 JRNL AUTH D.TU,Z.ZHU,A.Y.ZHOU,C.H.YUN,K.E.LEE,A.V.TOMS,Y.LI,G.P.DUNN, JRNL AUTH 2 E.CHAN,T.THAI,S.YANG,S.B.FICARRO,J.A.MARTO,H.JEON,W.C.HAHN, JRNL AUTH 3 D.A.BARBIE,M.J.ECK JRNL TITL STRUCTURE AND UBIQUITINATION-DEPENDENT ACTIVATION OF JRNL TITL 2 TANK-BINDING KINASE 1. JRNL REF CELL REP V. 3 747 2013 JRNL REFN ESSN 2211-1247 JRNL PMID 23453972 JRNL DOI 10.1016/J.CELREP.2013.01.033 REMARK 2 REMARK 2 RESOLUTION. 3.34 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.3_928) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.34 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.80 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.8 REMARK 3 NUMBER OF REFLECTIONS : 13358 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.223 REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.279 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.120 REMARK 3 FREE R VALUE TEST SET COUNT : 684 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.7986 - 5.7106 0.98 2795 141 0.2207 0.2848 REMARK 3 2 5.7106 - 4.5346 0.99 2755 137 0.2013 0.2643 REMARK 3 3 4.5346 - 3.9619 0.99 2742 128 0.1950 0.2234 REMARK 3 4 3.9619 - 3.5999 1.00 2695 160 0.2473 0.2810 REMARK 3 5 3.5999 - 3.3420 0.63 1687 118 0.3034 0.4161 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.86 REMARK 3 K_SOL : 0.32 REMARK 3 B_SOL : 99.45 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.360 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.200 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -20.72280 REMARK 3 B22 (A**2) : -20.72280 REMARK 3 B33 (A**2) : 41.44560 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 5021 REMARK 3 ANGLE : 1.213 6782 REMARK 3 CHIRALITY : 0.056 752 REMARK 3 PLANARITY : 0.005 861 REMARK 3 DIHEDRAL : 15.413 1878 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ -1:216) REMARK 3 ORIGIN FOR THE GROUP (A): 111.0307 18.2641 -31.5475 REMARK 3 T TENSOR REMARK 3 T11: 1.0348 T22: 0.2974 REMARK 3 T33: 0.8167 T12: -0.0764 REMARK 3 T13: 0.1805 T23: -0.0151 REMARK 3 L TENSOR REMARK 3 L11: 6.5158 L22: 6.2180 REMARK 3 L33: 2.8465 L12: -3.9774 REMARK 3 L13: -1.5215 L23: 1.0386 REMARK 3 S TENSOR REMARK 3 S11: 0.0319 S12: 0.7868 S13: -1.2225 REMARK 3 S21: -0.8940 S22: -0.1876 S23: 0.0527 REMARK 3 S31: 0.8139 S32: -0.4423 S33: 0.0578 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 217:270) REMARK 3 ORIGIN FOR THE GROUP (A): 90.6240 17.6433 -10.7186 REMARK 3 T TENSOR REMARK 3 T11: 0.8752 T22: 0.9724 REMARK 3 T33: 1.4592 T12: -0.0018 REMARK 3 T13: 0.1960 T23: 0.3200 REMARK 3 L TENSOR REMARK 3 L11: 6.6942 L22: 5.1681 REMARK 3 L33: 4.9136 L12: 2.3168 REMARK 3 L13: 0.6707 L23: -0.0926 REMARK 3 S TENSOR REMARK 3 S11: 0.1870 S12: -0.5859 S13: -2.6519 REMARK 3 S21: 0.6665 S22: -0.2312 S23: 0.2667 REMARK 3 S31: 0.3430 S32: -0.7311 S33: -0.0824 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 271:470) REMARK 3 ORIGIN FOR THE GROUP (A): 94.8082 46.8880 -14.3881 REMARK 3 T TENSOR REMARK 3 T11: 0.9759 T22: 0.7829 REMARK 3 T33: 0.5586 T12: 0.2699 REMARK 3 T13: 0.0579 T23: 0.1164 REMARK 3 L TENSOR REMARK 3 L11: 3.5850 L22: 4.9314 REMARK 3 L33: 0.3312 L12: -1.5890 REMARK 3 L13: 0.0192 L23: 1.7144 REMARK 3 S TENSOR REMARK 3 S11: 0.0368 S12: -0.0651 S13: -0.5915 REMARK 3 S21: -0.9258 S22: -0.1865 S23: 0.8139 REMARK 3 S31: -0.3525 S32: -0.2407 S33: 0.1250 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 471:526) REMARK 3 ORIGIN FOR THE GROUP (A): 79.8253 92.8876 -2.9869 REMARK 3 T TENSOR REMARK 3 T11: 0.9460 T22: 0.8651 REMARK 3 T33: 0.9409 T12: 0.2051 REMARK 3 T13: 0.0153 T23: -0.2069 REMARK 3 L TENSOR REMARK 3 L11: 8.8849 L22: 9.5843 REMARK 3 L33: 5.9153 L12: -6.6019 REMARK 3 L13: 2.9797 L23: -4.9237 REMARK 3 S TENSOR REMARK 3 S11: -0.7830 S12: -0.6542 S13: 1.3821 REMARK 3 S21: 1.7524 S22: 0.8676 S23: 0.0993 REMARK 3 S31: -0.2647 S32: 0.0430 S33: -0.0071 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 527:604) REMARK 3 ORIGIN FOR THE GROUP (A): 114.8789 31.8877 0.9246 REMARK 3 T TENSOR REMARK 3 T11: 0.9630 T22: 1.0459 REMARK 3 T33: 0.8564 T12: 0.2081 REMARK 3 T13: 0.3211 T23: 0.4296 REMARK 3 L TENSOR REMARK 3 L11: 4.8904 L22: 6.6859 REMARK 3 L33: 0.5680 L12: -1.7492 REMARK 3 L13: 1.1188 L23: -0.4399 REMARK 3 S TENSOR REMARK 3 S11: -0.3702 S12: -0.6890 S13: -0.6405 REMARK 3 S21: -0.1518 S22: 0.2440 S23: -0.9400 REMARK 3 S31: 0.2140 S32: 0.1615 S33: 0.1499 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 605:657) REMARK 3 ORIGIN FOR THE GROUP (A): 84.1099 73.4323 -5.3711 REMARK 3 T TENSOR REMARK 3 T11: 1.0885 T22: 1.1845 REMARK 3 T33: 0.4482 T12: 0.5596 REMARK 3 T13: 0.4008 T23: -0.1956 REMARK 3 L TENSOR REMARK 3 L11: 3.6030 L22: 3.1858 REMARK 3 L33: 1.4818 L12: -1.6288 REMARK 3 L13: 1.4426 L23: -0.4002 REMARK 3 S TENSOR REMARK 3 S11: -1.1900 S12: -0.5361 S13: 0.0421 REMARK 3 S21: 0.5693 S22: 0.4792 S23: 0.6602 REMARK 3 S31: -0.1693 S32: -0.1087 S33: 0.4053 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4IM3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-JAN-13. REMARK 100 THE DEPOSITION ID IS D_1000076923. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-APR-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97925 REMARK 200 MONOCHROMATOR : MD2 MICRO-DIFFRACTOMETER REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13368 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 87.3 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 51.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 4% MPD, 100 MM HEPES PH 7.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 56.94733 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 28.47367 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 28.47367 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 56.94733 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5930 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 60500 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -264.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 211.98000 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 122.38671 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -28.47367 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -5 REMARK 465 SER A -4 REMARK 465 GLY A -3 REMARK 465 SER A -2 REMARK 465 ILE A 43 REMARK 465 SER A 44 REMARK 465 PHE A 45 REMARK 465 LEU A 46 REMARK 465 ALA A 160 REMARK 465 ALA A 161 REMARK 465 ARG A 162 REMARK 465 GLU A 163 REMARK 465 LEU A 164 REMARK 465 GLU A 165 REMARK 465 ASP A 166 REMARK 465 ASP A 167 REMARK 465 GLU A 168 REMARK 465 GLN A 169 REMARK 465 PHE A 170 REMARK 465 VAL A 171 REMARK 465 SER A 172 REMARK 465 LEU A 173 REMARK 465 TYR A 174 REMARK 465 GLY A 175 REMARK 465 THR A 176 REMARK 465 GLU A 177 REMARK 465 GLU A 178 REMARK 465 TYR A 179 REMARK 465 LEU A 180 REMARK 465 HIS A 181 REMARK 465 PRO A 182 REMARK 465 ASP A 183 REMARK 465 MET A 184 REMARK 465 TYR A 185 REMARK 465 GLU A 186 REMARK 465 ARG A 187 REMARK 465 ALA A 188 REMARK 465 VAL A 189 REMARK 465 LEU A 190 REMARK 465 ARG A 191 REMARK 465 LYS A 192 REMARK 465 ASP A 193 REMARK 465 HIS A 194 REMARK 465 GLN A 195 REMARK 465 LYS A 196 REMARK 465 LYS A 197 REMARK 465 TYR A 198 REMARK 465 GLY A 199 REMARK 465 TYR A 482 REMARK 465 GLU A 483 REMARK 465 LYS A 484 REMARK 465 LEU A 485 REMARK 465 MET A 486 REMARK 465 LYS A 487 REMARK 465 ILE A 488 REMARK 465 ASN A 489 REMARK 465 LEU A 490 REMARK 465 GLU A 491 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 47 CG CD NE CZ NH1 NH2 REMARK 470 MET A 53 CG SD CE REMARK 470 ARG A 54 CD NE CZ NH1 NH2 REMARK 470 LYS A 69 CD CE NZ REMARK 470 ARG A 228 CG CD NE CZ NH1 NH2 REMARK 470 SER A 510 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OG SER A 3 OE2 GLU A 656 5664 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 225 -68.10 65.50 REMARK 500 ASN A 254 18.65 57.71 REMARK 500 ASP A 407 111.12 -160.65 REMARK 500 LYS A 480 20.25 -73.53 REMARK 500 HIS A 502 -60.34 -90.38 REMARK 500 TYR A 650 68.56 -65.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLY A 294 17.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BX7 A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HG A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HG A 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HG A 704 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HG A 705 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HG A 706 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 707 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4IM0 RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH MRT67307 REMARK 900 RELATED ID: 4IM2 RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN COMPLEX WITH BX795 DBREF 4IM3 A 1 657 UNP Q9UHD2 TBK1_HUMAN 1 657 SEQADV 4IM3 GLY A -5 UNP Q9UHD2 EXPRESSION TAG SEQADV 4IM3 SER A -4 UNP Q9UHD2 EXPRESSION TAG SEQADV 4IM3 GLY A -3 UNP Q9UHD2 EXPRESSION TAG SEQADV 4IM3 SER A -2 UNP Q9UHD2 EXPRESSION TAG SEQADV 4IM3 GLY A -1 UNP Q9UHD2 EXPRESSION TAG SEQADV 4IM3 SER A 0 UNP Q9UHD2 EXPRESSION TAG SEQADV 4IM3 ASN A 135 UNP Q9UHD2 ASP 135 ENGINEERED MUTATION SEQRES 1 A 663 GLY SER GLY SER GLY SER MET GLN SER THR SER ASN HIS SEQRES 2 A 663 LEU TRP LEU LEU SER ASP ILE LEU GLY GLN GLY ALA THR SEQRES 3 A 663 ALA ASN VAL PHE ARG GLY ARG HIS LYS LYS THR GLY ASP SEQRES 4 A 663 LEU PHE ALA ILE LYS VAL PHE ASN ASN ILE SER PHE LEU SEQRES 5 A 663 ARG PRO VAL ASP VAL GLN MET ARG GLU PHE GLU VAL LEU SEQRES 6 A 663 LYS LYS LEU ASN HIS LYS ASN ILE VAL LYS LEU PHE ALA SEQRES 7 A 663 ILE GLU GLU GLU THR THR THR ARG HIS LYS VAL LEU ILE SEQRES 8 A 663 MET GLU PHE CYS PRO CYS GLY SER LEU TYR THR VAL LEU SEQRES 9 A 663 GLU GLU PRO SER ASN ALA TYR GLY LEU PRO GLU SER GLU SEQRES 10 A 663 PHE LEU ILE VAL LEU ARG ASP VAL VAL GLY GLY MET ASN SEQRES 11 A 663 HIS LEU ARG GLU ASN GLY ILE VAL HIS ARG ASN ILE LYS SEQRES 12 A 663 PRO GLY ASN ILE MET ARG VAL ILE GLY GLU ASP GLY GLN SEQRES 13 A 663 SER VAL TYR LYS LEU THR ASP PHE GLY ALA ALA ARG GLU SEQRES 14 A 663 LEU GLU ASP ASP GLU GLN PHE VAL SER LEU TYR GLY THR SEQRES 15 A 663 GLU GLU TYR LEU HIS PRO ASP MET TYR GLU ARG ALA VAL SEQRES 16 A 663 LEU ARG LYS ASP HIS GLN LYS LYS TYR GLY ALA THR VAL SEQRES 17 A 663 ASP LEU TRP SER ILE GLY VAL THR PHE TYR HIS ALA ALA SEQRES 18 A 663 THR GLY SER LEU PRO PHE ARG PRO PHE GLU GLY PRO ARG SEQRES 19 A 663 ARG ASN LYS GLU VAL MET TYR LYS ILE ILE THR GLY LYS SEQRES 20 A 663 PRO SER GLY ALA ILE SER GLY VAL GLN LYS ALA GLU ASN SEQRES 21 A 663 GLY PRO ILE ASP TRP SER GLY ASP MET PRO VAL SER CYS SEQRES 22 A 663 SER LEU SER ARG GLY LEU GLN VAL LEU LEU THR PRO VAL SEQRES 23 A 663 LEU ALA ASN ILE LEU GLU ALA ASP GLN GLU LYS CYS TRP SEQRES 24 A 663 GLY PHE ASP GLN PHE PHE ALA GLU THR SER ASP ILE LEU SEQRES 25 A 663 HIS ARG MET VAL ILE HIS VAL PHE SER LEU GLN GLN MET SEQRES 26 A 663 THR ALA HIS LYS ILE TYR ILE HIS SER TYR ASN THR ALA SEQRES 27 A 663 THR ILE PHE HIS GLU LEU VAL TYR LYS GLN THR LYS ILE SEQRES 28 A 663 ILE SER SER ASN GLN GLU LEU ILE TYR GLU GLY ARG ARG SEQRES 29 A 663 LEU VAL LEU GLU PRO GLY ARG LEU ALA GLN HIS PHE PRO SEQRES 30 A 663 LYS THR THR GLU GLU ASN PRO ILE PHE VAL VAL SER ARG SEQRES 31 A 663 GLU PRO LEU ASN THR ILE GLY LEU ILE TYR GLU LYS ILE SEQRES 32 A 663 SER LEU PRO LYS VAL HIS PRO ARG TYR ASP LEU ASP GLY SEQRES 33 A 663 ASP ALA SER MET ALA LYS ALA ILE THR GLY VAL VAL CYS SEQRES 34 A 663 TYR ALA CYS ARG ILE ALA SER THR LEU LEU LEU TYR GLN SEQRES 35 A 663 GLU LEU MET ARG LYS GLY ILE ARG TRP LEU ILE GLU LEU SEQRES 36 A 663 ILE LYS ASP ASP TYR ASN GLU THR VAL HIS LYS LYS THR SEQRES 37 A 663 GLU VAL VAL ILE THR LEU ASP PHE CYS ILE ARG ASN ILE SEQRES 38 A 663 GLU LYS THR VAL LYS VAL TYR GLU LYS LEU MET LYS ILE SEQRES 39 A 663 ASN LEU GLU ALA ALA GLU LEU GLY GLU ILE SER ASP ILE SEQRES 40 A 663 HIS THR LYS LEU LEU ARG LEU SER SER SER GLN GLY THR SEQRES 41 A 663 ILE GLU THR SER LEU GLN ASP ILE ASP SER ARG LEU SER SEQRES 42 A 663 PRO GLY GLY SER LEU ALA ASP ALA TRP ALA HIS GLN GLU SEQRES 43 A 663 GLY THR HIS PRO LYS ASP ARG ASN VAL GLU LYS LEU GLN SEQRES 44 A 663 VAL LEU LEU ASN CYS MET THR GLU ILE TYR TYR GLN PHE SEQRES 45 A 663 LYS LYS ASP LYS ALA GLU ARG ARG LEU ALA TYR ASN GLU SEQRES 46 A 663 GLU GLN ILE HIS LYS PHE ASP LYS GLN LYS LEU TYR TYR SEQRES 47 A 663 HIS ALA THR LYS ALA MET THR HIS PHE THR ASP GLU CYS SEQRES 48 A 663 VAL LYS LYS TYR GLU ALA PHE LEU ASN LYS SER GLU GLU SEQRES 49 A 663 TRP ILE ARG LYS MET LEU HIS LEU ARG LYS GLN LEU LEU SEQRES 50 A 663 SER LEU THR ASN GLN CYS PHE ASP ILE GLU GLU GLU VAL SEQRES 51 A 663 SER LYS TYR GLN GLU TYR THR ASN GLU LEU GLN GLU THR HET BX7 A 701 68 HET HG A 702 1 HET HG A 703 1 HET HG A 704 1 HET HG A 705 1 HET HG A 706 1 HET CL A 707 1 HETNAM BX7 N-(3-{[5-IODO-4-({3-[(THIOPHEN-2-YLCARBONYL) HETNAM 2 BX7 AMINO]PROPYL}AMINO)PYRIMIDIN-2-YL]AMINO}PHENYL) HETNAM 3 BX7 PYRROLIDINE-1-CARBOXAMIDE HETNAM HG MERCURY (II) ION HETNAM CL CHLORIDE ION FORMUL 2 BX7 C23 H26 I N7 O2 S FORMUL 3 HG 5(HG 2+) FORMUL 8 CL CL 1- HELIX 1 1 VAL A 49 LEU A 62 1 14 HELIX 2 2 LEU A 94 GLU A 100 1 7 HELIX 3 3 PRO A 101 ALA A 104 5 4 HELIX 4 4 PRO A 108 ASN A 129 1 22 HELIX 5 5 THR A 201 GLY A 217 1 17 HELIX 6 6 ASN A 230 GLY A 240 1 11 HELIX 7 7 SER A 270 LEU A 285 1 16 HELIX 8 8 ASP A 288 CYS A 292 5 5 HELIX 9 9 GLY A 294 HIS A 307 1 14 HELIX 10 10 THR A 331 LYS A 344 1 14 HELIX 11 11 ILE A 346 GLN A 350 5 5 HELIX 12 12 LEU A 366 PHE A 370 5 5 HELIX 13 13 ASP A 407 CYS A 471 1 65 HELIX 14 14 ILE A 472 LYS A 480 1 9 HELIX 15 15 ALA A 493 SER A 527 1 35 HELIX 16 16 ALA A 535 GLU A 540 1 6 HELIX 17 17 HIS A 543 ASP A 546 5 4 HELIX 18 18 ARG A 547 GLU A 572 1 26 HELIX 19 19 ALA A 576 GLU A 604 1 29 HELIX 20 20 GLU A 604 SER A 645 1 42 SHEET 1 A 4 MET A 1 SER A 3 0 SHEET 2 A 4 HIS A 7 LEU A 10 -1 O TRP A 9 N GLN A 2 SHEET 3 A 4 ALA A 21 HIS A 28 -1 O ARG A 27 N LEU A 8 SHEET 4 A 4 ILE A 14 GLN A 17 -1 N LEU A 15 O VAL A 23 SHEET 1 B 6 MET A 1 SER A 3 0 SHEET 2 B 6 HIS A 7 LEU A 10 -1 O TRP A 9 N GLN A 2 SHEET 3 B 6 ALA A 21 HIS A 28 -1 O ARG A 27 N LEU A 8 SHEET 4 B 6 LEU A 34 PHE A 40 -1 O ILE A 37 N PHE A 24 SHEET 5 B 6 LYS A 82 MET A 86 -1 O MET A 86 N ALA A 36 SHEET 6 B 6 LEU A 70 GLU A 75 -1 N GLU A 74 O VAL A 83 SHEET 1 C 3 GLY A 92 SER A 93 0 SHEET 2 C 3 ILE A 141 ILE A 145 -1 O ARG A 143 N GLY A 92 SHEET 3 C 3 SER A 151 LEU A 155 -1 O VAL A 152 N VAL A 144 SHEET 1 D 3 PHE A 221 ARG A 222 0 SHEET 2 D 3 SER A 247 GLN A 250 1 O GLN A 250 N ARG A 222 SHEET 3 D 3 ILE A 257 SER A 260 -1 O ASP A 258 N VAL A 249 SHEET 1 E 5 THR A 320 ILE A 326 0 SHEET 2 E 5 MET A 309 SER A 315 -1 N VAL A 313 O HIS A 322 SHEET 3 E 5 ILE A 379 VAL A 382 1 O ILE A 379 N PHE A 314 SHEET 4 E 5 GLU A 351 TYR A 354 -1 N ILE A 353 O PHE A 380 SHEET 5 E 5 ARG A 357 ARG A 358 -1 O ARG A 357 N TYR A 354 LINK SG CYS A 91 HG HG A 706 1555 1555 3.17 LINK SG CYS A 423 HG HG A 703 1555 1555 3.38 LINK SG CYS A 426 HG HG A 704 1555 1555 3.17 LINK SG CYS A 471 HG HG A 702 1555 1555 3.20 LINK SG CYS A 558 HG HG A 705 1555 1555 4.21 SITE 1 AC1 16 LEU A 15 GLY A 18 VAL A 23 ALA A 36 SITE 2 AC1 16 LYS A 38 MET A 86 GLU A 87 PHE A 88 SITE 3 AC1 16 CYS A 89 PRO A 90 GLY A 92 THR A 96 SITE 4 AC1 16 MET A 142 THR A 156 ASP A 157 CL A 707 SITE 1 AC2 4 PHE A 470 CYS A 471 LYS A 477 GLN A 648 SITE 1 AC3 2 CYS A 423 HG A 704 SITE 1 AC4 3 CYS A 426 ARG A 427 HG A 703 SITE 1 AC5 1 CYS A 558 SITE 1 AC6 1 CYS A 91 SITE 1 AC7 4 LYS A 38 MET A 86 THR A 156 BX7 A 701 CRYST1 141.320 141.320 85.421 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007076 0.004085 0.000000 0.00000 SCALE2 0.000000 0.008171 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011707 0.00000